Multiple sequence alignment - TraesCS6D01G380000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G380000 chr6D 100.000 3014 0 0 1 3014 461386202 461389215 0.000000e+00 5566.0
1 TraesCS6D01G380000 chr6A 89.356 1475 74 28 1 1415 608072337 608073788 0.000000e+00 1777.0
2 TraesCS6D01G380000 chr6A 90.859 1280 65 19 1436 2672 608073769 608075039 0.000000e+00 1668.0
3 TraesCS6D01G380000 chr6A 98.319 119 2 0 2676 2794 608075977 608076095 3.040000e-50 209.0
4 TraesCS6D01G380000 chr6A 81.481 135 21 4 298 430 560817591 560817459 1.140000e-19 108.0
5 TraesCS6D01G380000 chr6B 92.370 1232 57 20 1454 2672 703147050 703148257 0.000000e+00 1720.0
6 TraesCS6D01G380000 chr6B 84.261 521 31 26 681 1170 703146032 703146532 7.610000e-126 460.0
7 TraesCS6D01G380000 chr6B 83.043 230 29 5 1 229 702893824 702894044 1.830000e-47 200.0
8 TraesCS6D01G380000 chr6B 82.609 230 30 5 1 229 702884951 702885171 8.530000e-46 195.0
9 TraesCS6D01G380000 chr6B 82.609 230 28 7 1 229 702952010 702952228 3.070000e-45 193.0
10 TraesCS6D01G380000 chr6B 86.875 160 14 4 536 688 702956388 702956547 3.990000e-39 172.0
11 TraesCS6D01G380000 chr6B 97.222 36 1 0 395 430 630505695 630505660 9.020000e-06 62.1
12 TraesCS6D01G380000 chr2D 85.558 547 58 12 1482 2015 207251558 207251020 1.220000e-153 553.0
13 TraesCS6D01G380000 chr2D 92.258 155 7 5 968 1119 207251786 207251634 6.540000e-52 215.0
14 TraesCS6D01G380000 chr2D 81.818 77 6 4 731 807 207251923 207251855 1.170000e-04 58.4
15 TraesCS6D01G380000 chr2B 82.033 551 57 13 1482 2015 260638978 260639503 5.970000e-117 431.0
16 TraesCS6D01G380000 chr2B 93.893 131 7 1 990 1119 260638788 260638918 2.370000e-46 196.0
17 TraesCS6D01G380000 chr2A 80.943 530 54 20 1482 1995 257854046 257854544 2.840000e-100 375.0
18 TraesCS6D01G380000 chr2A 90.952 210 17 2 2792 2999 11235196 11235405 6.360000e-72 281.0
19 TraesCS6D01G380000 chr2A 86.147 231 28 4 2786 3014 11194164 11194392 2.320000e-61 246.0
20 TraesCS6D01G380000 chr2A 95.082 122 6 0 998 1119 257853859 257853980 3.070000e-45 193.0
21 TraesCS6D01G380000 chr2A 79.182 269 34 7 293 545 24129452 24129714 1.860000e-37 167.0
22 TraesCS6D01G380000 chr5D 92.825 223 14 2 2794 3014 285034241 285034463 3.750000e-84 322.0
23 TraesCS6D01G380000 chr5D 87.444 223 26 2 2794 3014 550068309 550068087 3.860000e-64 255.0
24 TraesCS6D01G380000 chr3D 92.925 212 12 3 2790 2999 382744524 382744314 3.770000e-79 305.0
25 TraesCS6D01G380000 chr3D 90.135 223 20 2 2794 3014 365529836 365530058 3.800000e-74 289.0
26 TraesCS6D01G380000 chr7A 88.995 209 20 3 2794 3000 261887255 261887462 3.860000e-64 255.0
27 TraesCS6D01G380000 chr7A 86.147 231 28 4 2786 3014 194176683 194176455 2.320000e-61 246.0
28 TraesCS6D01G380000 chr7A 85.612 139 14 5 290 426 724651322 724651188 1.130000e-29 141.0
29 TraesCS6D01G380000 chr5A 86.726 226 26 4 2790 3014 519899954 519900176 6.450000e-62 248.0
30 TraesCS6D01G380000 chr3A 80.315 254 27 9 299 535 108468814 108468567 1.440000e-38 171.0
31 TraesCS6D01G380000 chrUn 86.466 133 16 2 299 429 46213434 46213566 8.710000e-31 145.0
32 TraesCS6D01G380000 chr4D 85.714 98 9 4 335 431 439697963 439697870 6.880000e-17 99.0
33 TraesCS6D01G380000 chr7B 86.076 79 10 1 2576 2654 453940706 453940629 1.930000e-12 84.2
34 TraesCS6D01G380000 chr4A 77.333 150 25 5 2499 2641 114721685 114721538 2.490000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G380000 chr6D 461386202 461389215 3013 False 5566.000000 5566 100.000000 1 3014 1 chr6D.!!$F1 3013
1 TraesCS6D01G380000 chr6A 608072337 608076095 3758 False 1218.000000 1777 92.844667 1 2794 3 chr6A.!!$F1 2793
2 TraesCS6D01G380000 chr6B 703146032 703148257 2225 False 1090.000000 1720 88.315500 681 2672 2 chr6B.!!$F5 1991
3 TraesCS6D01G380000 chr2D 207251020 207251923 903 True 275.466667 553 86.544667 731 2015 3 chr2D.!!$R1 1284
4 TraesCS6D01G380000 chr2B 260638788 260639503 715 False 313.500000 431 87.963000 990 2015 2 chr2B.!!$F1 1025
5 TraesCS6D01G380000 chr2A 257853859 257854544 685 False 284.000000 375 88.012500 998 1995 2 chr2A.!!$F4 997

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 518 0.248054 CGTTCGTATGTGCCATTGCC 60.248 55.0 0.0 0.0 36.33 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 2534 1.22851 GCAATAGCTGGCCTCCCTT 59.771 57.895 3.32 0.0 37.91 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 8.731275 AGGAAACCAATAAAAACTGAAAAAGG 57.269 30.769 0.00 0.00 0.00 3.11
99 101 5.983118 ACGATGAAAACCAATGGAAAAGAAC 59.017 36.000 6.16 0.00 0.00 3.01
114 116 7.734554 TGGAAAAGAACGAAAACAATGAAAAC 58.265 30.769 0.00 0.00 0.00 2.43
121 123 5.642686 ACGAAAACAATGAAAACGGAGAAA 58.357 33.333 0.00 0.00 0.00 2.52
123 125 7.419204 ACGAAAACAATGAAAACGGAGAAATA 58.581 30.769 0.00 0.00 0.00 1.40
183 185 7.055667 AGTTCGGTGACATATATGATGAACT 57.944 36.000 19.63 21.27 38.81 3.01
187 189 6.946009 TCGGTGACATATATGATGAACTCCTA 59.054 38.462 19.63 5.28 0.00 2.94
206 208 6.071108 ACTCCTATATGCTATGTGTGTGATCC 60.071 42.308 0.00 0.00 0.00 3.36
211 213 3.800531 TGCTATGTGTGTGATCCAGATG 58.199 45.455 0.00 0.00 0.00 2.90
245 247 7.108005 GTGTTAATTTTAACGTTGCACAACAG 58.892 34.615 11.99 8.59 44.52 3.16
247 249 5.694674 AATTTTAACGTTGCACAACAGTG 57.305 34.783 11.99 0.53 41.20 3.66
257 259 6.033966 CGTTGCACAACAGTGTATAGATCTA 58.966 40.000 13.52 4.57 41.20 1.98
259 261 7.062956 CGTTGCACAACAGTGTATAGATCTAAA 59.937 37.037 6.52 0.00 41.20 1.85
263 265 9.319143 GCACAACAGTGTATAGATCTAAAGATT 57.681 33.333 6.52 0.00 35.72 2.40
283 285 7.772332 AGATTTGCTTATTAGTTACACGGAG 57.228 36.000 0.00 0.00 0.00 4.63
298 300 1.871039 ACGGAGGTGAACAAATGAACG 59.129 47.619 0.00 0.00 0.00 3.95
299 301 1.196808 CGGAGGTGAACAAATGAACGG 59.803 52.381 0.00 0.00 0.00 4.44
300 302 2.227194 GGAGGTGAACAAATGAACGGT 58.773 47.619 0.00 0.00 0.00 4.83
301 303 3.404899 GGAGGTGAACAAATGAACGGTA 58.595 45.455 0.00 0.00 0.00 4.02
302 304 3.816523 GGAGGTGAACAAATGAACGGTAA 59.183 43.478 0.00 0.00 0.00 2.85
303 305 4.457949 GGAGGTGAACAAATGAACGGTAAT 59.542 41.667 0.00 0.00 0.00 1.89
304 306 5.048294 GGAGGTGAACAAATGAACGGTAATT 60.048 40.000 0.00 0.00 0.00 1.40
305 307 5.768317 AGGTGAACAAATGAACGGTAATTG 58.232 37.500 0.00 0.00 0.00 2.32
306 308 4.384547 GGTGAACAAATGAACGGTAATTGC 59.615 41.667 0.00 0.00 0.00 3.56
307 309 4.979197 GTGAACAAATGAACGGTAATTGCA 59.021 37.500 0.00 0.00 0.00 4.08
308 310 4.979197 TGAACAAATGAACGGTAATTGCAC 59.021 37.500 0.00 0.00 0.00 4.57
309 311 3.908213 ACAAATGAACGGTAATTGCACC 58.092 40.909 0.00 0.00 35.04 5.01
310 312 3.249917 CAAATGAACGGTAATTGCACCC 58.750 45.455 0.00 0.00 34.90 4.61
355 357 0.598065 GGCAAGCGAACCATCTTTGT 59.402 50.000 0.00 0.00 0.00 2.83
399 402 7.254227 ACAAGATAAACGACAGCAGTTTTTA 57.746 32.000 0.00 3.19 41.44 1.52
403 406 6.849305 AGATAAACGACAGCAGTTTTTAAACG 59.151 34.615 0.00 0.00 43.51 3.60
418 421 6.741448 TTTTAAACGAAAATTGCCTTCTCG 57.259 33.333 0.00 0.00 31.90 4.04
430 433 5.053725 ATTGCCTTCTCGGGAAGAAAATGT 61.054 41.667 26.78 4.36 46.96 2.71
431 434 7.065256 ATTGCCTTCTCGGGAAGAAAATGTG 62.065 44.000 26.78 8.66 46.96 3.21
452 473 1.630369 TCATGTCTTCCTCCCCACTTG 59.370 52.381 0.00 0.00 0.00 3.16
453 474 0.995024 ATGTCTTCCTCCCCACTTGG 59.005 55.000 0.00 0.00 0.00 3.61
466 487 3.067601 CCCCACTTGGTCACAACTAAAAC 59.932 47.826 0.00 0.00 32.14 2.43
468 489 4.202010 CCCACTTGGTCACAACTAAAACTG 60.202 45.833 0.00 0.00 32.14 3.16
473 494 3.957497 TGGTCACAACTAAAACTGCCATT 59.043 39.130 0.00 0.00 0.00 3.16
484 505 1.808411 ACTGCCATTGAATCGTTCGT 58.192 45.000 0.00 0.00 0.00 3.85
485 506 2.967362 ACTGCCATTGAATCGTTCGTA 58.033 42.857 0.00 0.00 0.00 3.43
493 514 2.899976 TGAATCGTTCGTATGTGCCAT 58.100 42.857 0.00 0.00 0.00 4.40
494 515 3.266636 TGAATCGTTCGTATGTGCCATT 58.733 40.909 0.00 0.00 0.00 3.16
495 516 3.063316 TGAATCGTTCGTATGTGCCATTG 59.937 43.478 0.00 0.00 0.00 2.82
496 517 0.724549 TCGTTCGTATGTGCCATTGC 59.275 50.000 0.00 0.00 38.26 3.56
497 518 0.248054 CGTTCGTATGTGCCATTGCC 60.248 55.000 0.00 0.00 36.33 4.52
498 519 0.808125 GTTCGTATGTGCCATTGCCA 59.192 50.000 0.00 0.00 36.33 4.92
499 520 1.093972 TTCGTATGTGCCATTGCCAG 58.906 50.000 0.00 0.00 36.33 4.85
500 521 0.747644 TCGTATGTGCCATTGCCAGG 60.748 55.000 0.00 0.00 36.33 4.45
504 525 2.036256 GTGCCATTGCCAGGTCCT 59.964 61.111 0.00 0.00 36.33 3.85
544 569 4.107311 AGTTAGGAGGGTCCCAAATGAAAA 59.893 41.667 11.55 0.00 37.19 2.29
547 572 3.116746 AGGAGGGTCCCAAATGAAAAGTT 60.117 43.478 11.55 0.00 37.19 2.66
553 578 4.550422 GTCCCAAATGAAAAGTTCAGCTC 58.450 43.478 0.00 0.00 43.98 4.09
582 611 0.745128 AGTCGAGATCGCCGAGAAGT 60.745 55.000 12.35 0.00 39.60 3.01
591 620 1.421410 CGCCGAGAAGTACATGTGCC 61.421 60.000 9.11 0.00 0.00 5.01
599 628 1.289160 AGTACATGTGCCATGACCCT 58.711 50.000 18.41 9.69 0.00 4.34
673 702 4.801330 ATCACAGATGTCACGACCTTAA 57.199 40.909 0.00 0.00 0.00 1.85
991 1052 3.134574 TCTTCCTAGCTCCTCGATCTC 57.865 52.381 0.00 0.00 0.00 2.75
1143 1208 0.179150 CTTCTTCTCGTCCAGCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
1226 1309 7.114529 GCTACATCTAAAATTCATGCATGCTTC 59.885 37.037 22.25 0.00 0.00 3.86
1227 1310 6.869695 ACATCTAAAATTCATGCATGCTTCA 58.130 32.000 22.25 1.24 0.00 3.02
1245 1344 4.082787 GCTTCATTCTTCAATTTCACCCGA 60.083 41.667 0.00 0.00 0.00 5.14
1247 1346 3.435327 TCATTCTTCAATTTCACCCGACG 59.565 43.478 0.00 0.00 0.00 5.12
1274 1377 3.464907 CACCAAGCAGATGATCGATTCT 58.535 45.455 0.00 0.00 0.00 2.40
1289 1392 2.641305 GATTCTGATCTGCTTGGTGCT 58.359 47.619 0.00 0.00 43.37 4.40
1302 1407 0.185175 TGGTGCTAGCTATCCGAGGA 59.815 55.000 17.23 0.00 0.00 3.71
1319 1424 3.681034 CGAGGAGGATGAAACAAGCAGAT 60.681 47.826 0.00 0.00 0.00 2.90
1395 1500 6.751888 CGATTCAGATCAACAATTAAAACCCC 59.248 38.462 0.00 0.00 32.33 4.95
1401 1506 6.887002 AGATCAACAATTAAAACCCCTCTCTC 59.113 38.462 0.00 0.00 0.00 3.20
1410 1515 2.286935 ACCCCTCTCTCTCTCTCTCT 57.713 55.000 0.00 0.00 0.00 3.10
1411 1516 2.127708 ACCCCTCTCTCTCTCTCTCTC 58.872 57.143 0.00 0.00 0.00 3.20
1414 1519 3.312890 CCCTCTCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
1417 1522 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
1418 1523 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1419 1524 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1421 1526 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1423 1528 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1425 1530 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1427 1532 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1428 1533 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1429 1534 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1430 1535 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1432 1537 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1434 1539 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1470 1950 5.046159 TCTCTCTCTTTTTACCCGGCATTTA 60.046 40.000 0.00 0.00 0.00 1.40
1665 2151 7.519168 CGCCAATATACTCTACTCCGATGATAG 60.519 44.444 0.00 0.00 0.00 2.08
1690 2176 8.367156 AGAACATTTCATATCTCTTAGCTCCTC 58.633 37.037 0.00 0.00 0.00 3.71
2030 2534 4.152045 GCGGTGATTTGATTTGATTTGCAA 59.848 37.500 0.00 0.00 33.88 4.08
2096 2601 8.462589 TGCTTCCTCTATATATGAGCTATGAG 57.537 38.462 0.00 0.00 0.00 2.90
2160 2665 6.990341 CACTGTAATGATTTGTGGATCTCA 57.010 37.500 0.00 0.00 0.00 3.27
2426 2953 7.918033 CCTTACTGAGTATACAAGTCATGTCAG 59.082 40.741 12.91 11.93 42.70 3.51
2437 2971 5.048921 ACAAGTCATGTCAGATTTTGCTCAG 60.049 40.000 0.00 0.00 37.96 3.35
2469 3003 7.907389 TCCCTGAACCTTGATATGTATATGAC 58.093 38.462 0.00 0.00 0.00 3.06
2476 3010 7.821652 ACCTTGATATGTATATGACGAGACTG 58.178 38.462 0.00 0.00 0.00 3.51
2480 3014 8.265165 TGATATGTATATGACGAGACTGGTAC 57.735 38.462 0.00 0.00 0.00 3.34
2502 3036 7.113544 GGTACGTTACCGCTAACAGAATATTAC 59.886 40.741 0.00 0.00 39.39 1.89
2506 3040 8.285394 CGTTACCGCTAACAGAATATTACTCTA 58.715 37.037 1.81 0.00 33.01 2.43
2597 3138 1.158484 CGCCGATCTACCTCGTCTCA 61.158 60.000 0.00 0.00 36.93 3.27
2645 3186 0.250081 GGATCTCGACCCTTGATGGC 60.250 60.000 0.00 0.00 0.00 4.40
2652 3193 3.089874 CCCTTGATGGCGGGAGGA 61.090 66.667 0.00 0.00 43.44 3.71
2667 3208 2.876581 GGAGGACCCACACTTCATTTT 58.123 47.619 0.00 0.00 34.14 1.82
2672 3213 5.070685 AGGACCCACACTTCATTTTTAGTC 58.929 41.667 0.00 0.00 0.00 2.59
2673 3214 4.825085 GGACCCACACTTCATTTTTAGTCA 59.175 41.667 0.00 0.00 0.00 3.41
2692 4167 4.699735 AGTCATTTTATCGCACACCATTCA 59.300 37.500 0.00 0.00 0.00 2.57
2794 4269 6.268617 TCATATCAGGGAGATGGACAACTAAG 59.731 42.308 1.51 0.00 37.57 2.18
2795 4270 4.061131 TCAGGGAGATGGACAACTAAGA 57.939 45.455 0.00 0.00 0.00 2.10
2796 4271 4.026744 TCAGGGAGATGGACAACTAAGAG 58.973 47.826 0.00 0.00 0.00 2.85
2797 4272 2.769095 AGGGAGATGGACAACTAAGAGC 59.231 50.000 0.00 0.00 0.00 4.09
2798 4273 2.501723 GGGAGATGGACAACTAAGAGCA 59.498 50.000 0.00 0.00 0.00 4.26
2799 4274 3.135530 GGGAGATGGACAACTAAGAGCAT 59.864 47.826 0.00 0.00 0.00 3.79
2800 4275 4.376146 GGAGATGGACAACTAAGAGCATC 58.624 47.826 0.00 0.00 0.00 3.91
2814 4289 3.096489 GAGCATCTCTAGCTGTTGGAG 57.904 52.381 0.00 0.00 43.58 3.86
2827 4302 2.843545 TGGAGCCCCCAAGAACAC 59.156 61.111 0.00 0.00 43.29 3.32
2828 4303 2.035783 GGAGCCCCCAAGAACACC 59.964 66.667 0.00 0.00 34.14 4.16
2829 4304 2.840753 GGAGCCCCCAAGAACACCA 61.841 63.158 0.00 0.00 34.14 4.17
2830 4305 1.603739 GAGCCCCCAAGAACACCAC 60.604 63.158 0.00 0.00 0.00 4.16
2831 4306 2.600470 GCCCCCAAGAACACCACC 60.600 66.667 0.00 0.00 0.00 4.61
2832 4307 2.282180 CCCCCAAGAACACCACCG 60.282 66.667 0.00 0.00 0.00 4.94
2833 4308 2.824880 CCCCCAAGAACACCACCGA 61.825 63.158 0.00 0.00 0.00 4.69
2834 4309 1.149627 CCCCAAGAACACCACCGAA 59.850 57.895 0.00 0.00 0.00 4.30
2835 4310 1.170290 CCCCAAGAACACCACCGAAC 61.170 60.000 0.00 0.00 0.00 3.95
2836 4311 1.170290 CCCAAGAACACCACCGAACC 61.170 60.000 0.00 0.00 0.00 3.62
2837 4312 0.464735 CCAAGAACACCACCGAACCA 60.465 55.000 0.00 0.00 0.00 3.67
2838 4313 1.384525 CAAGAACACCACCGAACCAA 58.615 50.000 0.00 0.00 0.00 3.67
2839 4314 1.746220 CAAGAACACCACCGAACCAAA 59.254 47.619 0.00 0.00 0.00 3.28
2840 4315 2.131776 AGAACACCACCGAACCAAAA 57.868 45.000 0.00 0.00 0.00 2.44
2841 4316 2.448453 AGAACACCACCGAACCAAAAA 58.552 42.857 0.00 0.00 0.00 1.94
2859 4334 2.971901 AAAGTTGGTGTCTTAGGGGG 57.028 50.000 0.00 0.00 0.00 5.40
2860 4335 0.404426 AAGTTGGTGTCTTAGGGGGC 59.596 55.000 0.00 0.00 0.00 5.80
2861 4336 0.770557 AGTTGGTGTCTTAGGGGGCA 60.771 55.000 0.00 0.00 0.00 5.36
2862 4337 0.111639 GTTGGTGTCTTAGGGGGCAA 59.888 55.000 0.00 0.00 0.00 4.52
2863 4338 0.854218 TTGGTGTCTTAGGGGGCAAA 59.146 50.000 0.00 0.00 0.00 3.68
2864 4339 1.080638 TGGTGTCTTAGGGGGCAAAT 58.919 50.000 0.00 0.00 0.00 2.32
2865 4340 1.272425 TGGTGTCTTAGGGGGCAAATG 60.272 52.381 0.00 0.00 0.00 2.32
2866 4341 0.817654 GTGTCTTAGGGGGCAAATGC 59.182 55.000 0.00 0.00 41.14 3.56
2867 4342 0.704076 TGTCTTAGGGGGCAAATGCT 59.296 50.000 5.25 0.00 41.70 3.79
2868 4343 1.340991 TGTCTTAGGGGGCAAATGCTC 60.341 52.381 5.25 0.09 41.88 4.26
2874 4349 3.122850 GGGCAAATGCTCCATCCG 58.877 61.111 5.25 0.00 41.70 4.18
2875 4350 2.492773 GGGCAAATGCTCCATCCGG 61.493 63.158 5.25 0.00 41.70 5.14
2876 4351 2.414594 GCAAATGCTCCATCCGGC 59.585 61.111 0.00 0.00 38.21 6.13
2877 4352 3.122850 CAAATGCTCCATCCGGCC 58.877 61.111 0.00 0.00 0.00 6.13
2878 4353 2.516930 AAATGCTCCATCCGGCCG 60.517 61.111 21.04 21.04 0.00 6.13
2879 4354 3.042733 AAATGCTCCATCCGGCCGA 62.043 57.895 30.73 13.82 0.00 5.54
2880 4355 2.550699 AAATGCTCCATCCGGCCGAA 62.551 55.000 30.73 6.63 0.00 4.30
2881 4356 2.550699 AATGCTCCATCCGGCCGAAA 62.551 55.000 30.73 15.53 0.00 3.46
2882 4357 2.203209 GCTCCATCCGGCCGAAAT 60.203 61.111 30.73 17.34 0.00 2.17
2883 4358 1.070786 GCTCCATCCGGCCGAAATA 59.929 57.895 30.73 9.55 0.00 1.40
2884 4359 0.951040 GCTCCATCCGGCCGAAATAG 60.951 60.000 30.73 17.60 0.00 1.73
2885 4360 0.320771 CTCCATCCGGCCGAAATAGG 60.321 60.000 30.73 20.17 0.00 2.57
2886 4361 0.761323 TCCATCCGGCCGAAATAGGA 60.761 55.000 30.73 22.16 37.17 2.94
2887 4362 0.320771 CCATCCGGCCGAAATAGGAG 60.321 60.000 30.73 7.15 36.08 3.69
2888 4363 0.393077 CATCCGGCCGAAATAGGAGT 59.607 55.000 30.73 1.46 36.08 3.85
2889 4364 0.393077 ATCCGGCCGAAATAGGAGTG 59.607 55.000 30.73 5.39 36.08 3.51
2890 4365 1.887707 CCGGCCGAAATAGGAGTGC 60.888 63.158 30.73 0.00 0.00 4.40
2891 4366 1.153449 CGGCCGAAATAGGAGTGCA 60.153 57.895 24.07 0.00 0.00 4.57
2892 4367 0.532862 CGGCCGAAATAGGAGTGCAT 60.533 55.000 24.07 0.00 0.00 3.96
2893 4368 0.947244 GGCCGAAATAGGAGTGCATG 59.053 55.000 0.00 0.00 0.00 4.06
2894 4369 0.947244 GCCGAAATAGGAGTGCATGG 59.053 55.000 0.00 0.00 0.00 3.66
2895 4370 1.597742 CCGAAATAGGAGTGCATGGG 58.402 55.000 0.00 0.00 0.00 4.00
2896 4371 1.597742 CGAAATAGGAGTGCATGGGG 58.402 55.000 0.00 0.00 0.00 4.96
2897 4372 1.140852 CGAAATAGGAGTGCATGGGGA 59.859 52.381 0.00 0.00 0.00 4.81
2898 4373 2.808202 CGAAATAGGAGTGCATGGGGAG 60.808 54.545 0.00 0.00 0.00 4.30
2899 4374 1.143813 AATAGGAGTGCATGGGGAGG 58.856 55.000 0.00 0.00 0.00 4.30
2900 4375 0.769776 ATAGGAGTGCATGGGGAGGG 60.770 60.000 0.00 0.00 0.00 4.30
2901 4376 4.512914 GGAGTGCATGGGGAGGGC 62.513 72.222 0.00 0.00 0.00 5.19
2902 4377 3.731728 GAGTGCATGGGGAGGGCA 61.732 66.667 0.00 0.00 34.70 5.36
2903 4378 3.025599 AGTGCATGGGGAGGGCAT 61.026 61.111 0.00 0.00 40.05 4.40
2904 4379 2.520260 GTGCATGGGGAGGGCATC 60.520 66.667 0.00 0.00 40.05 3.91
2905 4380 3.022497 TGCATGGGGAGGGCATCA 61.022 61.111 0.08 0.00 31.58 3.07
2906 4381 2.397051 TGCATGGGGAGGGCATCAT 61.397 57.895 0.08 0.00 31.58 2.45
2907 4382 1.605738 GCATGGGGAGGGCATCATC 60.606 63.158 0.08 0.00 0.00 2.92
2908 4383 1.076192 CATGGGGAGGGCATCATCC 59.924 63.158 0.08 2.55 42.72 3.51
2917 4392 3.518003 GCATCATCCCAGCCACAC 58.482 61.111 0.00 0.00 0.00 3.82
2918 4393 2.123428 GCATCATCCCAGCCACACC 61.123 63.158 0.00 0.00 0.00 4.16
2919 4394 1.454479 CATCATCCCAGCCACACCC 60.454 63.158 0.00 0.00 0.00 4.61
2920 4395 2.693871 ATCATCCCAGCCACACCCC 61.694 63.158 0.00 0.00 0.00 4.95
2921 4396 3.660571 CATCCCAGCCACACCCCA 61.661 66.667 0.00 0.00 0.00 4.96
2922 4397 3.661648 ATCCCAGCCACACCCCAC 61.662 66.667 0.00 0.00 0.00 4.61
2929 4404 4.614036 CCACACCCCACCCCAACC 62.614 72.222 0.00 0.00 0.00 3.77
2930 4405 3.826822 CACACCCCACCCCAACCA 61.827 66.667 0.00 0.00 0.00 3.67
2931 4406 3.030611 ACACCCCACCCCAACCAA 61.031 61.111 0.00 0.00 0.00 3.67
2932 4407 2.283809 CACCCCACCCCAACCAAA 59.716 61.111 0.00 0.00 0.00 3.28
2933 4408 1.383248 CACCCCACCCCAACCAAAA 60.383 57.895 0.00 0.00 0.00 2.44
2934 4409 1.074850 ACCCCACCCCAACCAAAAG 60.075 57.895 0.00 0.00 0.00 2.27
2935 4410 1.074850 CCCCACCCCAACCAAAAGT 60.075 57.895 0.00 0.00 0.00 2.66
2936 4411 0.692756 CCCCACCCCAACCAAAAGTT 60.693 55.000 0.00 0.00 40.16 2.66
2937 4412 1.208706 CCCACCCCAACCAAAAGTTT 58.791 50.000 0.00 0.00 36.18 2.66
2938 4413 1.134250 CCCACCCCAACCAAAAGTTTG 60.134 52.381 0.00 0.00 36.18 2.93
2939 4414 1.557371 CCACCCCAACCAAAAGTTTGT 59.443 47.619 3.26 0.00 36.18 2.83
2940 4415 2.626840 CACCCCAACCAAAAGTTTGTG 58.373 47.619 3.26 0.00 36.18 3.33
2941 4416 2.234908 CACCCCAACCAAAAGTTTGTGA 59.765 45.455 3.26 0.00 36.18 3.58
2942 4417 2.499693 ACCCCAACCAAAAGTTTGTGAG 59.500 45.455 3.26 0.00 36.18 3.51
2943 4418 2.158971 CCCCAACCAAAAGTTTGTGAGG 60.159 50.000 3.26 1.96 36.18 3.86
2944 4419 2.158971 CCCAACCAAAAGTTTGTGAGGG 60.159 50.000 3.26 6.64 36.18 4.30
2945 4420 2.763448 CCAACCAAAAGTTTGTGAGGGA 59.237 45.455 3.26 0.00 36.18 4.20
2946 4421 3.196685 CCAACCAAAAGTTTGTGAGGGAA 59.803 43.478 3.26 0.00 36.18 3.97
2947 4422 4.323104 CCAACCAAAAGTTTGTGAGGGAAA 60.323 41.667 3.26 0.00 36.18 3.13
2948 4423 5.241662 CAACCAAAAGTTTGTGAGGGAAAA 58.758 37.500 3.26 0.00 36.18 2.29
2949 4424 5.084818 ACCAAAAGTTTGTGAGGGAAAAG 57.915 39.130 3.26 0.00 36.45 2.27
2950 4425 4.775253 ACCAAAAGTTTGTGAGGGAAAAGA 59.225 37.500 3.26 0.00 36.45 2.52
2951 4426 5.425217 ACCAAAAGTTTGTGAGGGAAAAGAT 59.575 36.000 3.26 0.00 36.45 2.40
2952 4427 6.070251 ACCAAAAGTTTGTGAGGGAAAAGATT 60.070 34.615 3.26 0.00 36.45 2.40
2953 4428 7.125053 ACCAAAAGTTTGTGAGGGAAAAGATTA 59.875 33.333 3.26 0.00 36.45 1.75
2954 4429 7.984617 CCAAAAGTTTGTGAGGGAAAAGATTAA 59.015 33.333 3.26 0.00 36.45 1.40
2955 4430 9.034544 CAAAAGTTTGTGAGGGAAAAGATTAAG 57.965 33.333 0.00 0.00 33.59 1.85
2956 4431 7.898014 AAGTTTGTGAGGGAAAAGATTAAGT 57.102 32.000 0.00 0.00 0.00 2.24
2957 4432 7.277174 AGTTTGTGAGGGAAAAGATTAAGTG 57.723 36.000 0.00 0.00 0.00 3.16
2958 4433 6.265422 AGTTTGTGAGGGAAAAGATTAAGTGG 59.735 38.462 0.00 0.00 0.00 4.00
2959 4434 4.662278 TGTGAGGGAAAAGATTAAGTGGG 58.338 43.478 0.00 0.00 0.00 4.61
2960 4435 3.444034 GTGAGGGAAAAGATTAAGTGGGC 59.556 47.826 0.00 0.00 0.00 5.36
2961 4436 3.075283 TGAGGGAAAAGATTAAGTGGGCA 59.925 43.478 0.00 0.00 0.00 5.36
2962 4437 4.086457 GAGGGAAAAGATTAAGTGGGCAA 58.914 43.478 0.00 0.00 0.00 4.52
2963 4438 4.089361 AGGGAAAAGATTAAGTGGGCAAG 58.911 43.478 0.00 0.00 0.00 4.01
2964 4439 4.086457 GGGAAAAGATTAAGTGGGCAAGA 58.914 43.478 0.00 0.00 0.00 3.02
2965 4440 4.082190 GGGAAAAGATTAAGTGGGCAAGAC 60.082 45.833 0.00 0.00 0.00 3.01
2966 4441 4.522789 GGAAAAGATTAAGTGGGCAAGACA 59.477 41.667 0.00 0.00 0.00 3.41
2967 4442 5.010617 GGAAAAGATTAAGTGGGCAAGACAA 59.989 40.000 0.00 0.00 0.00 3.18
2968 4443 6.462347 GGAAAAGATTAAGTGGGCAAGACAAA 60.462 38.462 0.00 0.00 0.00 2.83
2969 4444 5.712152 AAGATTAAGTGGGCAAGACAAAG 57.288 39.130 0.00 0.00 0.00 2.77
2970 4445 4.082125 AGATTAAGTGGGCAAGACAAAGG 58.918 43.478 0.00 0.00 0.00 3.11
2971 4446 3.586470 TTAAGTGGGCAAGACAAAGGA 57.414 42.857 0.00 0.00 0.00 3.36
2972 4447 1.692411 AAGTGGGCAAGACAAAGGAC 58.308 50.000 0.00 0.00 0.00 3.85
2973 4448 0.550914 AGTGGGCAAGACAAAGGACA 59.449 50.000 0.00 0.00 0.00 4.02
2974 4449 1.145738 AGTGGGCAAGACAAAGGACAT 59.854 47.619 0.00 0.00 0.00 3.06
2975 4450 1.270550 GTGGGCAAGACAAAGGACATG 59.729 52.381 0.00 0.00 0.00 3.21
2976 4451 1.133513 TGGGCAAGACAAAGGACATGT 60.134 47.619 0.00 0.00 0.00 3.21
2977 4452 1.270550 GGGCAAGACAAAGGACATGTG 59.729 52.381 1.15 0.00 0.00 3.21
2978 4453 1.270550 GGCAAGACAAAGGACATGTGG 59.729 52.381 1.15 0.00 0.00 4.17
2979 4454 1.270550 GCAAGACAAAGGACATGTGGG 59.729 52.381 1.15 0.00 0.00 4.61
2980 4455 1.888512 CAAGACAAAGGACATGTGGGG 59.111 52.381 1.15 0.00 0.00 4.96
2981 4456 1.444933 AGACAAAGGACATGTGGGGA 58.555 50.000 1.15 0.00 0.00 4.81
2982 4457 1.352352 AGACAAAGGACATGTGGGGAG 59.648 52.381 1.15 0.00 0.00 4.30
2983 4458 1.351017 GACAAAGGACATGTGGGGAGA 59.649 52.381 1.15 0.00 0.00 3.71
2984 4459 1.073923 ACAAAGGACATGTGGGGAGAC 59.926 52.381 1.15 0.00 0.00 3.36
2985 4460 1.073763 CAAAGGACATGTGGGGAGACA 59.926 52.381 1.15 0.00 0.00 3.41
2986 4461 0.693049 AAGGACATGTGGGGAGACAC 59.307 55.000 1.15 0.00 41.68 3.67
2987 4462 1.079127 GGACATGTGGGGAGACACG 60.079 63.158 1.15 0.00 44.21 4.49
2988 4463 1.541310 GGACATGTGGGGAGACACGA 61.541 60.000 1.15 0.00 44.21 4.35
2989 4464 0.537188 GACATGTGGGGAGACACGAT 59.463 55.000 1.15 0.00 44.21 3.73
2990 4465 0.984230 ACATGTGGGGAGACACGATT 59.016 50.000 0.00 0.00 44.21 3.34
2991 4466 1.066143 ACATGTGGGGAGACACGATTC 60.066 52.381 0.00 0.00 44.21 2.52
2992 4467 0.175760 ATGTGGGGAGACACGATTCG 59.824 55.000 4.14 4.14 44.21 3.34
2993 4468 1.810030 GTGGGGAGACACGATTCGC 60.810 63.158 5.86 0.00 35.32 4.70
2994 4469 2.202892 GGGGAGACACGATTCGCC 60.203 66.667 5.86 0.00 38.93 5.54
2995 4470 2.582498 GGGAGACACGATTCGCCG 60.582 66.667 5.86 0.00 36.36 6.46
2996 4471 2.488355 GGAGACACGATTCGCCGA 59.512 61.111 5.86 0.00 0.00 5.54
2997 4472 1.153901 GGAGACACGATTCGCCGAA 60.154 57.895 0.33 0.33 0.00 4.30
2998 4473 0.734942 GGAGACACGATTCGCCGAAA 60.735 55.000 2.60 0.00 0.00 3.46
2999 4474 1.065358 GAGACACGATTCGCCGAAAA 58.935 50.000 2.60 0.00 0.00 2.29
3000 4475 1.659098 GAGACACGATTCGCCGAAAAT 59.341 47.619 2.60 0.00 0.00 1.82
3001 4476 1.659098 AGACACGATTCGCCGAAAATC 59.341 47.619 2.60 0.00 0.00 2.17
3002 4477 0.725117 ACACGATTCGCCGAAAATCC 59.275 50.000 2.60 0.00 30.84 3.01
3003 4478 0.027586 CACGATTCGCCGAAAATCCC 59.972 55.000 2.60 0.00 30.84 3.85
3004 4479 1.275657 CGATTCGCCGAAAATCCCG 59.724 57.895 2.60 0.00 30.84 5.14
3005 4480 1.010013 GATTCGCCGAAAATCCCGC 60.010 57.895 2.60 0.00 0.00 6.13
3006 4481 1.436983 GATTCGCCGAAAATCCCGCT 61.437 55.000 2.60 0.00 0.00 5.52
3007 4482 1.714899 ATTCGCCGAAAATCCCGCTG 61.715 55.000 2.60 0.00 0.00 5.18
3008 4483 3.876198 CGCCGAAAATCCCGCTGG 61.876 66.667 0.00 0.00 0.00 4.85
3009 4484 4.193334 GCCGAAAATCCCGCTGGC 62.193 66.667 0.00 0.00 35.04 4.85
3010 4485 3.876198 CCGAAAATCCCGCTGGCG 61.876 66.667 8.08 8.08 39.44 5.69
3011 4486 4.536687 CGAAAATCCCGCTGGCGC 62.537 66.667 9.63 0.00 38.24 6.53
3012 4487 4.193334 GAAAATCCCGCTGGCGCC 62.193 66.667 22.73 22.73 38.24 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.725405 TCCTTTTTCAGTTTTTATTGGTTTCC 57.275 30.769 0.00 0.00 0.00 3.13
41 42 9.982291 GTTCCTTTTTCAGTTTTTATTGGTTTC 57.018 29.630 0.00 0.00 0.00 2.78
84 86 5.331876 TGTTTTCGTTCTTTTCCATTGGT 57.668 34.783 1.86 0.00 0.00 3.67
99 101 6.747659 ATTTCTCCGTTTTCATTGTTTTCG 57.252 33.333 0.00 0.00 0.00 3.46
114 116 9.769093 CTACTAAACCAACAAAATATTTCTCCG 57.231 33.333 0.10 0.00 0.00 4.63
123 125 7.232534 TGGCATCTTCTACTAAACCAACAAAAT 59.767 33.333 0.00 0.00 0.00 1.82
162 164 5.775195 AGGAGTTCATCATATATGTCACCGA 59.225 40.000 12.42 1.40 0.00 4.69
183 185 5.779771 TGGATCACACACATAGCATATAGGA 59.220 40.000 0.00 0.00 0.00 2.94
187 189 5.813513 TCTGGATCACACACATAGCATAT 57.186 39.130 0.00 0.00 0.00 1.78
257 259 8.556213 TCCGTGTAACTAATAAGCAAATCTTT 57.444 30.769 0.00 0.00 33.12 2.52
259 261 6.761714 CCTCCGTGTAACTAATAAGCAAATCT 59.238 38.462 0.00 0.00 31.75 2.40
263 265 5.047164 TCACCTCCGTGTAACTAATAAGCAA 60.047 40.000 0.00 0.00 41.09 3.91
271 273 4.669206 TTTGTTCACCTCCGTGTAACTA 57.331 40.909 0.00 0.00 41.09 2.24
274 276 4.074627 TCATTTGTTCACCTCCGTGTAA 57.925 40.909 0.00 0.00 41.09 2.41
283 285 4.384547 GCAATTACCGTTCATTTGTTCACC 59.615 41.667 0.00 0.00 0.00 4.02
289 291 3.249917 GGGTGCAATTACCGTTCATTTG 58.750 45.455 0.00 0.00 41.79 2.32
298 300 2.041686 TTCGCCGGGTGCAATTACC 61.042 57.895 2.18 0.00 41.33 2.85
299 301 1.135939 GTTCGCCGGGTGCAATTAC 59.864 57.895 2.18 0.00 41.33 1.89
300 302 2.392181 CGTTCGCCGGGTGCAATTA 61.392 57.895 2.18 0.00 41.33 1.40
301 303 3.732892 CGTTCGCCGGGTGCAATT 61.733 61.111 2.18 0.00 41.33 2.32
332 334 1.675641 GATGGTTCGCTTGCCACCT 60.676 57.895 9.25 0.00 37.62 4.00
355 357 7.603651 TCTTGTTTTACAACTAAAACTGCCAA 58.396 30.769 14.18 3.55 46.58 4.52
382 384 4.972201 TCGTTTAAAAACTGCTGTCGTTT 58.028 34.783 0.00 3.92 36.77 3.60
385 387 5.918387 TTTTCGTTTAAAAACTGCTGTCG 57.082 34.783 0.00 0.00 34.11 4.35
386 388 6.623353 GCAATTTTCGTTTAAAAACTGCTGTC 59.377 34.615 7.93 0.00 41.83 3.51
387 389 6.456315 GGCAATTTTCGTTTAAAAACTGCTGT 60.456 34.615 13.12 0.00 43.16 4.40
388 390 5.901336 GGCAATTTTCGTTTAAAAACTGCTG 59.099 36.000 13.12 0.00 43.16 4.41
389 391 5.815222 AGGCAATTTTCGTTTAAAAACTGCT 59.185 32.000 13.12 0.76 43.16 4.24
390 392 6.043327 AGGCAATTTTCGTTTAAAAACTGC 57.957 33.333 6.91 6.91 43.02 4.40
399 402 2.030274 CCCGAGAAGGCAATTTTCGTTT 60.030 45.455 11.23 0.00 42.38 3.60
403 406 3.494045 CTTCCCGAGAAGGCAATTTTC 57.506 47.619 0.00 0.00 44.97 2.29
418 421 5.703876 GAAGACATGACACATTTTCTTCCC 58.296 41.667 0.00 1.80 35.12 3.97
430 433 0.984230 GTGGGGAGGAAGACATGACA 59.016 55.000 0.00 0.00 0.00 3.58
431 434 1.280457 AGTGGGGAGGAAGACATGAC 58.720 55.000 0.00 0.00 0.00 3.06
432 435 1.630369 CAAGTGGGGAGGAAGACATGA 59.370 52.381 0.00 0.00 0.00 3.07
452 473 4.037446 TCAATGGCAGTTTTAGTTGTGACC 59.963 41.667 0.00 0.00 0.00 4.02
453 474 5.181690 TCAATGGCAGTTTTAGTTGTGAC 57.818 39.130 0.00 0.00 0.00 3.67
466 487 3.309682 ACATACGAACGATTCAATGGCAG 59.690 43.478 0.14 0.00 30.84 4.85
468 489 3.607439 CACATACGAACGATTCAATGGC 58.393 45.455 0.14 0.00 30.84 4.40
473 494 2.371910 TGGCACATACGAACGATTCA 57.628 45.000 0.14 0.00 0.00 2.57
497 518 2.125912 CGTTCGCCAGAGGACCTG 60.126 66.667 0.00 0.00 42.55 4.00
498 519 2.156051 GAACGTTCGCCAGAGGACCT 62.156 60.000 13.36 0.00 0.00 3.85
499 520 1.737008 GAACGTTCGCCAGAGGACC 60.737 63.158 13.36 0.00 0.00 4.46
500 521 2.087009 CGAACGTTCGCCAGAGGAC 61.087 63.158 34.54 1.91 44.26 3.85
513 534 1.153628 CCCTCCTAACTGGCGAACG 60.154 63.158 0.00 0.00 35.26 3.95
518 539 1.205460 TTGGGACCCTCCTAACTGGC 61.205 60.000 13.00 0.00 31.67 4.85
544 569 4.153117 CGACTGCAAATTAAGAGCTGAACT 59.847 41.667 0.00 0.00 0.00 3.01
547 572 3.925379 TCGACTGCAAATTAAGAGCTGA 58.075 40.909 0.00 0.00 0.00 4.26
553 578 3.302740 GGCGATCTCGACTGCAAATTAAG 60.303 47.826 3.33 0.00 45.57 1.85
673 702 4.035208 GGACTGACTTGTCACAAACGAAAT 59.965 41.667 0.00 0.00 38.61 2.17
964 1019 2.632512 GAGGAGCTAGGAAGAAGATGGG 59.367 54.545 0.00 0.00 0.00 4.00
991 1052 2.031516 GGCGCTCCATGGATCGATG 61.032 63.158 35.46 16.75 36.04 3.84
1226 1309 3.426159 CCGTCGGGTGAAATTGAAGAATG 60.426 47.826 2.34 0.00 0.00 2.67
1227 1310 2.747446 CCGTCGGGTGAAATTGAAGAAT 59.253 45.455 2.34 0.00 0.00 2.40
1245 1344 1.903877 ATCTGCTTGGTGCTAGCCGT 61.904 55.000 13.29 0.00 43.37 5.68
1247 1346 0.107508 TCATCTGCTTGGTGCTAGCC 60.108 55.000 13.29 3.27 43.37 3.93
1302 1407 5.113446 AGATCATCTGCTTGTTTCATCCT 57.887 39.130 0.00 0.00 0.00 3.24
1338 1443 9.381033 ACATGAATGAAATTGAAGAAACAAACA 57.619 25.926 0.00 0.00 36.07 2.83
1339 1444 9.640974 CACATGAATGAAATTGAAGAAACAAAC 57.359 29.630 0.00 0.00 36.07 2.93
1340 1445 9.381033 ACACATGAATGAAATTGAAGAAACAAA 57.619 25.926 0.00 0.00 36.07 2.83
1395 1500 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1401 1506 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1410 1515 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1411 1516 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1414 1519 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1417 1522 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1418 1523 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1419 1524 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1421 1526 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1423 1528 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1425 1530 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1427 1532 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1428 1533 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1429 1534 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1430 1535 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1432 1537 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1434 1539 6.627087 AAAAGAGAGAGAGAGAGAGAGAGA 57.373 41.667 0.00 0.00 0.00 3.10
1470 1950 9.545105 TTCTGCACATTTACATGAAAAGAAAAT 57.455 25.926 0.00 0.00 34.11 1.82
1584 2064 9.552114 GAGATGTTGATCAAACTTACAATCTTG 57.448 33.333 10.35 0.00 39.70 3.02
1665 2151 8.147058 TGAGGAGCTAAGAGATATGAAATGTTC 58.853 37.037 0.00 0.00 0.00 3.18
2030 2534 1.228510 GCAATAGCTGGCCTCCCTT 59.771 57.895 3.32 0.00 37.91 3.95
2051 2555 4.759693 AGCAACATTACGATCACAAAAGGA 59.240 37.500 0.00 0.00 0.00 3.36
2096 2601 8.723942 ATGGGATAGACATCGCTTAATTATTC 57.276 34.615 3.76 0.00 42.95 1.75
2177 2682 6.923508 TCACCAAGACGTTGCTCATATTATAG 59.076 38.462 0.00 0.00 31.64 1.31
2205 2710 1.456296 CCACTGTGATGATGTGTGGG 58.544 55.000 9.86 0.00 43.01 4.61
2360 2865 9.371136 GATCGATATAGCAAATTAACATGGAGA 57.629 33.333 0.00 0.00 0.00 3.71
2426 2953 4.096081 CAGGGAGATGTTCTGAGCAAAATC 59.904 45.833 0.00 0.00 0.00 2.17
2437 2971 3.703001 TCAAGGTTCAGGGAGATGTTC 57.297 47.619 0.00 0.00 0.00 3.18
2532 3066 0.889186 GCGTGGGAGCCTTTCTTTCA 60.889 55.000 0.00 0.00 0.00 2.69
2622 3163 2.159179 TCAAGGGTCGAGATCCATCA 57.841 50.000 5.08 0.00 32.73 3.07
2652 3193 6.976934 AATGACTAAAAATGAAGTGTGGGT 57.023 33.333 0.00 0.00 0.00 4.51
2657 3198 9.340695 TGCGATAAAATGACTAAAAATGAAGTG 57.659 29.630 0.00 0.00 0.00 3.16
2658 3199 9.341899 GTGCGATAAAATGACTAAAAATGAAGT 57.658 29.630 0.00 0.00 0.00 3.01
2667 3208 6.372937 TGAATGGTGTGCGATAAAATGACTAA 59.627 34.615 0.00 0.00 0.00 2.24
2672 3213 4.794762 CACTGAATGGTGTGCGATAAAATG 59.205 41.667 0.00 0.00 33.04 2.32
2673 3214 4.699735 TCACTGAATGGTGTGCGATAAAAT 59.300 37.500 0.00 0.00 38.28 1.82
2692 4167 4.852134 TGCACATAAAACAATGCTCACT 57.148 36.364 0.00 0.00 38.90 3.41
2699 4174 6.532826 AGAAACCCAATGCACATAAAACAAT 58.467 32.000 0.00 0.00 0.00 2.71
2794 4269 2.802774 GCTCCAACAGCTAGAGATGCTC 60.803 54.545 0.00 0.00 45.83 4.26
2795 4270 1.138661 GCTCCAACAGCTAGAGATGCT 59.861 52.381 0.00 0.00 45.83 3.79
2796 4271 1.580815 GCTCCAACAGCTAGAGATGC 58.419 55.000 0.00 0.00 45.83 3.91
2810 4285 2.840753 GGTGTTCTTGGGGGCTCCA 61.841 63.158 0.00 0.00 45.43 3.86
2811 4286 2.035783 GGTGTTCTTGGGGGCTCC 59.964 66.667 0.00 0.00 0.00 4.70
2812 4287 1.603739 GTGGTGTTCTTGGGGGCTC 60.604 63.158 0.00 0.00 0.00 4.70
2813 4288 2.520968 GTGGTGTTCTTGGGGGCT 59.479 61.111 0.00 0.00 0.00 5.19
2814 4289 2.600470 GGTGGTGTTCTTGGGGGC 60.600 66.667 0.00 0.00 0.00 5.80
2815 4290 2.282180 CGGTGGTGTTCTTGGGGG 60.282 66.667 0.00 0.00 0.00 5.40
2816 4291 1.149627 TTCGGTGGTGTTCTTGGGG 59.850 57.895 0.00 0.00 0.00 4.96
2817 4292 1.170290 GGTTCGGTGGTGTTCTTGGG 61.170 60.000 0.00 0.00 0.00 4.12
2818 4293 0.464735 TGGTTCGGTGGTGTTCTTGG 60.465 55.000 0.00 0.00 0.00 3.61
2819 4294 1.384525 TTGGTTCGGTGGTGTTCTTG 58.615 50.000 0.00 0.00 0.00 3.02
2820 4295 2.131776 TTTGGTTCGGTGGTGTTCTT 57.868 45.000 0.00 0.00 0.00 2.52
2821 4296 2.131776 TTTTGGTTCGGTGGTGTTCT 57.868 45.000 0.00 0.00 0.00 3.01
2822 4297 2.943449 TTTTTGGTTCGGTGGTGTTC 57.057 45.000 0.00 0.00 0.00 3.18
2838 4313 3.572642 CCCCCTAAGACACCAACTTTTT 58.427 45.455 0.00 0.00 0.00 1.94
2839 4314 2.755208 GCCCCCTAAGACACCAACTTTT 60.755 50.000 0.00 0.00 0.00 2.27
2840 4315 1.203013 GCCCCCTAAGACACCAACTTT 60.203 52.381 0.00 0.00 0.00 2.66
2841 4316 0.404426 GCCCCCTAAGACACCAACTT 59.596 55.000 0.00 0.00 0.00 2.66
2842 4317 0.770557 TGCCCCCTAAGACACCAACT 60.771 55.000 0.00 0.00 0.00 3.16
2843 4318 0.111639 TTGCCCCCTAAGACACCAAC 59.888 55.000 0.00 0.00 0.00 3.77
2844 4319 0.854218 TTTGCCCCCTAAGACACCAA 59.146 50.000 0.00 0.00 0.00 3.67
2845 4320 1.080638 ATTTGCCCCCTAAGACACCA 58.919 50.000 0.00 0.00 0.00 4.17
2846 4321 1.474330 CATTTGCCCCCTAAGACACC 58.526 55.000 0.00 0.00 0.00 4.16
2847 4322 0.817654 GCATTTGCCCCCTAAGACAC 59.182 55.000 0.00 0.00 34.31 3.67
2848 4323 0.704076 AGCATTTGCCCCCTAAGACA 59.296 50.000 0.00 0.00 43.38 3.41
2849 4324 1.393603 GAGCATTTGCCCCCTAAGAC 58.606 55.000 0.00 0.00 43.38 3.01
2850 4325 0.258774 GGAGCATTTGCCCCCTAAGA 59.741 55.000 0.00 0.00 43.38 2.10
2851 4326 0.033208 TGGAGCATTTGCCCCCTAAG 60.033 55.000 0.25 0.00 38.26 2.18
2852 4327 0.636101 ATGGAGCATTTGCCCCCTAA 59.364 50.000 0.25 0.00 38.26 2.69
2853 4328 0.185901 GATGGAGCATTTGCCCCCTA 59.814 55.000 0.25 0.00 38.26 3.53
2854 4329 1.075748 GATGGAGCATTTGCCCCCT 60.076 57.895 0.25 0.00 38.26 4.79
2855 4330 2.136229 GGATGGAGCATTTGCCCCC 61.136 63.158 0.25 2.99 38.26 5.40
2856 4331 2.492773 CGGATGGAGCATTTGCCCC 61.493 63.158 0.00 0.00 43.38 5.80
2857 4332 2.492773 CCGGATGGAGCATTTGCCC 61.493 63.158 0.00 1.32 43.38 5.36
2858 4333 3.122850 CCGGATGGAGCATTTGCC 58.877 61.111 0.00 0.00 43.38 4.52
2859 4334 2.414594 GCCGGATGGAGCATTTGC 59.585 61.111 5.05 0.00 37.49 3.68
2860 4335 2.837883 CGGCCGGATGGAGCATTTG 61.838 63.158 20.10 0.00 37.49 2.32
2861 4336 2.516930 CGGCCGGATGGAGCATTT 60.517 61.111 20.10 0.00 37.49 2.32
2862 4337 2.550699 TTTCGGCCGGATGGAGCATT 62.551 55.000 27.83 0.00 37.49 3.56
2863 4338 2.343475 ATTTCGGCCGGATGGAGCAT 62.343 55.000 27.83 1.92 37.49 3.79
2864 4339 1.691195 TATTTCGGCCGGATGGAGCA 61.691 55.000 27.83 0.00 37.49 4.26
2865 4340 0.951040 CTATTTCGGCCGGATGGAGC 60.951 60.000 27.83 0.00 37.49 4.70
2866 4341 0.320771 CCTATTTCGGCCGGATGGAG 60.321 60.000 27.83 13.87 37.49 3.86
2867 4342 0.761323 TCCTATTTCGGCCGGATGGA 60.761 55.000 27.83 21.07 37.49 3.41
2868 4343 0.320771 CTCCTATTTCGGCCGGATGG 60.321 60.000 27.83 20.24 38.77 3.51
2869 4344 0.393077 ACTCCTATTTCGGCCGGATG 59.607 55.000 27.83 10.03 0.00 3.51
2870 4345 0.393077 CACTCCTATTTCGGCCGGAT 59.607 55.000 27.83 21.38 0.00 4.18
2871 4346 1.820581 CACTCCTATTTCGGCCGGA 59.179 57.895 27.83 16.16 0.00 5.14
2872 4347 1.887707 GCACTCCTATTTCGGCCGG 60.888 63.158 27.83 8.55 0.00 6.13
2873 4348 0.532862 ATGCACTCCTATTTCGGCCG 60.533 55.000 22.12 22.12 0.00 6.13
2874 4349 0.947244 CATGCACTCCTATTTCGGCC 59.053 55.000 0.00 0.00 0.00 6.13
2875 4350 0.947244 CCATGCACTCCTATTTCGGC 59.053 55.000 0.00 0.00 0.00 5.54
2876 4351 1.597742 CCCATGCACTCCTATTTCGG 58.402 55.000 0.00 0.00 0.00 4.30
2877 4352 1.140852 TCCCCATGCACTCCTATTTCG 59.859 52.381 0.00 0.00 0.00 3.46
2878 4353 2.487986 CCTCCCCATGCACTCCTATTTC 60.488 54.545 0.00 0.00 0.00 2.17
2879 4354 1.496429 CCTCCCCATGCACTCCTATTT 59.504 52.381 0.00 0.00 0.00 1.40
2880 4355 1.143813 CCTCCCCATGCACTCCTATT 58.856 55.000 0.00 0.00 0.00 1.73
2881 4356 0.769776 CCCTCCCCATGCACTCCTAT 60.770 60.000 0.00 0.00 0.00 2.57
2882 4357 1.384502 CCCTCCCCATGCACTCCTA 60.385 63.158 0.00 0.00 0.00 2.94
2883 4358 2.693864 CCCTCCCCATGCACTCCT 60.694 66.667 0.00 0.00 0.00 3.69
2884 4359 4.512914 GCCCTCCCCATGCACTCC 62.513 72.222 0.00 0.00 0.00 3.85
2885 4360 2.972892 GATGCCCTCCCCATGCACTC 62.973 65.000 0.00 0.00 37.92 3.51
2886 4361 3.025599 ATGCCCTCCCCATGCACT 61.026 61.111 0.00 0.00 37.92 4.40
2887 4362 2.520260 GATGCCCTCCCCATGCAC 60.520 66.667 0.00 0.00 37.92 4.57
2888 4363 2.361865 GATGATGCCCTCCCCATGCA 62.362 60.000 0.00 0.00 39.68 3.96
2889 4364 1.605738 GATGATGCCCTCCCCATGC 60.606 63.158 0.00 0.00 0.00 4.06
2890 4365 1.076192 GGATGATGCCCTCCCCATG 59.924 63.158 0.00 0.00 0.00 3.66
2891 4366 2.165656 GGGATGATGCCCTCCCCAT 61.166 63.158 0.00 0.00 44.68 4.00
2892 4367 2.778278 GGGATGATGCCCTCCCCA 60.778 66.667 0.00 0.00 44.68 4.96
2899 4374 2.123428 GTGTGGCTGGGATGATGCC 61.123 63.158 0.00 0.00 46.26 4.40
2900 4375 2.123428 GGTGTGGCTGGGATGATGC 61.123 63.158 0.00 0.00 0.00 3.91
2901 4376 1.454479 GGGTGTGGCTGGGATGATG 60.454 63.158 0.00 0.00 0.00 3.07
2902 4377 2.693871 GGGGTGTGGCTGGGATGAT 61.694 63.158 0.00 0.00 0.00 2.45
2903 4378 3.338250 GGGGTGTGGCTGGGATGA 61.338 66.667 0.00 0.00 0.00 2.92
2904 4379 3.660571 TGGGGTGTGGCTGGGATG 61.661 66.667 0.00 0.00 0.00 3.51
2905 4380 3.661648 GTGGGGTGTGGCTGGGAT 61.662 66.667 0.00 0.00 0.00 3.85
2912 4387 4.614036 GGTTGGGGTGGGGTGTGG 62.614 72.222 0.00 0.00 0.00 4.17
2913 4388 2.880629 TTTGGTTGGGGTGGGGTGTG 62.881 60.000 0.00 0.00 0.00 3.82
2914 4389 2.182858 TTTTGGTTGGGGTGGGGTGT 62.183 55.000 0.00 0.00 0.00 4.16
2915 4390 1.383248 TTTTGGTTGGGGTGGGGTG 60.383 57.895 0.00 0.00 0.00 4.61
2916 4391 1.074850 CTTTTGGTTGGGGTGGGGT 60.075 57.895 0.00 0.00 0.00 4.95
2917 4392 0.692756 AACTTTTGGTTGGGGTGGGG 60.693 55.000 0.00 0.00 36.70 4.96
2918 4393 1.134250 CAAACTTTTGGTTGGGGTGGG 60.134 52.381 0.00 0.00 43.09 4.61
2919 4394 2.323968 CAAACTTTTGGTTGGGGTGG 57.676 50.000 0.00 0.00 43.09 4.61
2926 4401 5.247337 TCTTTTCCCTCACAAACTTTTGGTT 59.753 36.000 6.65 0.00 42.34 3.67
2927 4402 4.775253 TCTTTTCCCTCACAAACTTTTGGT 59.225 37.500 6.65 0.00 42.34 3.67
2928 4403 5.337578 TCTTTTCCCTCACAAACTTTTGG 57.662 39.130 6.65 0.00 42.34 3.28
2929 4404 8.940768 TTAATCTTTTCCCTCACAAACTTTTG 57.059 30.769 0.00 0.00 43.62 2.44
2930 4405 8.758829 ACTTAATCTTTTCCCTCACAAACTTTT 58.241 29.630 0.00 0.00 0.00 2.27
2931 4406 8.197439 CACTTAATCTTTTCCCTCACAAACTTT 58.803 33.333 0.00 0.00 0.00 2.66
2932 4407 7.201911 CCACTTAATCTTTTCCCTCACAAACTT 60.202 37.037 0.00 0.00 0.00 2.66
2933 4408 6.265422 CCACTTAATCTTTTCCCTCACAAACT 59.735 38.462 0.00 0.00 0.00 2.66
2934 4409 6.447162 CCACTTAATCTTTTCCCTCACAAAC 58.553 40.000 0.00 0.00 0.00 2.93
2935 4410 5.538433 CCCACTTAATCTTTTCCCTCACAAA 59.462 40.000 0.00 0.00 0.00 2.83
2936 4411 5.076873 CCCACTTAATCTTTTCCCTCACAA 58.923 41.667 0.00 0.00 0.00 3.33
2937 4412 4.662278 CCCACTTAATCTTTTCCCTCACA 58.338 43.478 0.00 0.00 0.00 3.58
2938 4413 3.444034 GCCCACTTAATCTTTTCCCTCAC 59.556 47.826 0.00 0.00 0.00 3.51
2939 4414 3.075283 TGCCCACTTAATCTTTTCCCTCA 59.925 43.478 0.00 0.00 0.00 3.86
2940 4415 3.697166 TGCCCACTTAATCTTTTCCCTC 58.303 45.455 0.00 0.00 0.00 4.30
2941 4416 3.825908 TGCCCACTTAATCTTTTCCCT 57.174 42.857 0.00 0.00 0.00 4.20
2942 4417 4.082190 GTCTTGCCCACTTAATCTTTTCCC 60.082 45.833 0.00 0.00 0.00 3.97
2943 4418 4.522789 TGTCTTGCCCACTTAATCTTTTCC 59.477 41.667 0.00 0.00 0.00 3.13
2944 4419 5.705609 TGTCTTGCCCACTTAATCTTTTC 57.294 39.130 0.00 0.00 0.00 2.29
2945 4420 6.462909 CCTTTGTCTTGCCCACTTAATCTTTT 60.463 38.462 0.00 0.00 0.00 2.27
2946 4421 5.011023 CCTTTGTCTTGCCCACTTAATCTTT 59.989 40.000 0.00 0.00 0.00 2.52
2947 4422 4.524328 CCTTTGTCTTGCCCACTTAATCTT 59.476 41.667 0.00 0.00 0.00 2.40
2948 4423 4.082125 CCTTTGTCTTGCCCACTTAATCT 58.918 43.478 0.00 0.00 0.00 2.40
2949 4424 4.079253 TCCTTTGTCTTGCCCACTTAATC 58.921 43.478 0.00 0.00 0.00 1.75
2950 4425 3.826729 GTCCTTTGTCTTGCCCACTTAAT 59.173 43.478 0.00 0.00 0.00 1.40
2951 4426 3.219281 GTCCTTTGTCTTGCCCACTTAA 58.781 45.455 0.00 0.00 0.00 1.85
2952 4427 2.173782 TGTCCTTTGTCTTGCCCACTTA 59.826 45.455 0.00 0.00 0.00 2.24
2953 4428 1.064017 TGTCCTTTGTCTTGCCCACTT 60.064 47.619 0.00 0.00 0.00 3.16
2954 4429 0.550914 TGTCCTTTGTCTTGCCCACT 59.449 50.000 0.00 0.00 0.00 4.00
2955 4430 1.270550 CATGTCCTTTGTCTTGCCCAC 59.729 52.381 0.00 0.00 0.00 4.61
2956 4431 1.133513 ACATGTCCTTTGTCTTGCCCA 60.134 47.619 0.00 0.00 0.00 5.36
2957 4432 1.270550 CACATGTCCTTTGTCTTGCCC 59.729 52.381 0.00 0.00 0.00 5.36
2958 4433 1.270550 CCACATGTCCTTTGTCTTGCC 59.729 52.381 0.00 0.00 0.00 4.52
2959 4434 1.270550 CCCACATGTCCTTTGTCTTGC 59.729 52.381 0.00 0.00 0.00 4.01
2960 4435 1.888512 CCCCACATGTCCTTTGTCTTG 59.111 52.381 0.00 0.00 0.00 3.02
2961 4436 1.780309 TCCCCACATGTCCTTTGTCTT 59.220 47.619 0.00 0.00 0.00 3.01
2962 4437 1.352352 CTCCCCACATGTCCTTTGTCT 59.648 52.381 0.00 0.00 0.00 3.41
2963 4438 1.351017 TCTCCCCACATGTCCTTTGTC 59.649 52.381 0.00 0.00 0.00 3.18
2964 4439 1.073923 GTCTCCCCACATGTCCTTTGT 59.926 52.381 0.00 0.00 0.00 2.83
2965 4440 1.073763 TGTCTCCCCACATGTCCTTTG 59.926 52.381 0.00 0.00 0.00 2.77
2966 4441 1.073923 GTGTCTCCCCACATGTCCTTT 59.926 52.381 0.00 0.00 35.38 3.11
2967 4442 0.693049 GTGTCTCCCCACATGTCCTT 59.307 55.000 0.00 0.00 35.38 3.36
2968 4443 1.544825 CGTGTCTCCCCACATGTCCT 61.545 60.000 0.00 0.00 34.98 3.85
2969 4444 1.079127 CGTGTCTCCCCACATGTCC 60.079 63.158 0.00 0.00 34.98 4.02
2970 4445 0.537188 ATCGTGTCTCCCCACATGTC 59.463 55.000 0.00 0.00 35.18 3.06
2971 4446 0.984230 AATCGTGTCTCCCCACATGT 59.016 50.000 0.00 0.00 35.18 3.21
2972 4447 1.656652 GAATCGTGTCTCCCCACATG 58.343 55.000 0.00 0.00 34.98 3.21
2973 4448 0.175760 CGAATCGTGTCTCCCCACAT 59.824 55.000 0.00 0.00 34.98 3.21
2974 4449 1.589630 CGAATCGTGTCTCCCCACA 59.410 57.895 0.00 0.00 34.98 4.17
2975 4450 1.810030 GCGAATCGTGTCTCCCCAC 60.810 63.158 4.07 0.00 0.00 4.61
2976 4451 2.577059 GCGAATCGTGTCTCCCCA 59.423 61.111 4.07 0.00 0.00 4.96
2977 4452 2.202892 GGCGAATCGTGTCTCCCC 60.203 66.667 4.07 0.00 0.00 4.81
2978 4453 2.552585 TTCGGCGAATCGTGTCTCCC 62.553 60.000 19.83 0.00 0.00 4.30
2979 4454 0.734942 TTTCGGCGAATCGTGTCTCC 60.735 55.000 24.33 0.00 0.00 3.71
2980 4455 1.065358 TTTTCGGCGAATCGTGTCTC 58.935 50.000 24.33 0.00 0.00 3.36
2981 4456 1.659098 GATTTTCGGCGAATCGTGTCT 59.341 47.619 24.33 3.17 0.00 3.41
2982 4457 1.267383 GGATTTTCGGCGAATCGTGTC 60.267 52.381 24.33 15.45 34.97 3.67
2983 4458 0.725117 GGATTTTCGGCGAATCGTGT 59.275 50.000 24.33 7.74 34.97 4.49
2984 4459 0.027586 GGGATTTTCGGCGAATCGTG 59.972 55.000 24.33 0.00 34.97 4.35
2985 4460 1.426041 CGGGATTTTCGGCGAATCGT 61.426 55.000 24.33 12.16 34.97 3.73
2986 4461 1.275657 CGGGATTTTCGGCGAATCG 59.724 57.895 24.33 16.95 34.97 3.34
2987 4462 1.010013 GCGGGATTTTCGGCGAATC 60.010 57.895 24.33 18.20 33.71 2.52
2988 4463 1.451387 AGCGGGATTTTCGGCGAAT 60.451 52.632 24.33 9.61 37.92 3.34
2989 4464 2.046700 AGCGGGATTTTCGGCGAA 60.047 55.556 19.83 19.83 37.92 4.70
2990 4465 2.817834 CAGCGGGATTTTCGGCGA 60.818 61.111 4.99 4.99 37.92 5.54
2991 4466 3.876198 CCAGCGGGATTTTCGGCG 61.876 66.667 0.00 0.00 37.92 6.46
2992 4467 4.193334 GCCAGCGGGATTTTCGGC 62.193 66.667 7.23 0.00 35.59 5.54
2993 4468 3.876198 CGCCAGCGGGATTTTCGG 61.876 66.667 7.23 0.00 35.59 4.30
2994 4469 4.536687 GCGCCAGCGGGATTTTCG 62.537 66.667 14.63 0.66 40.19 3.46
2995 4470 4.193334 GGCGCCAGCGGGATTTTC 62.193 66.667 24.80 0.00 46.35 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.