Multiple sequence alignment - TraesCS6D01G379800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G379800 chr6D 100.000 6741 0 0 1 6741 461353602 461360342 0.000000e+00 12449.0
1 TraesCS6D01G379800 chr6D 92.683 82 6 0 3395 3476 471973108 471973189 1.190000e-22 119.0
2 TraesCS6D01G379800 chr6D 92.683 82 6 0 3395 3476 472033447 472033528 1.190000e-22 119.0
3 TraesCS6D01G379800 chr6D 92.593 54 4 0 6258 6311 461359804 461359857 2.020000e-10 78.7
4 TraesCS6D01G379800 chr6D 92.593 54 4 0 6203 6256 461359859 461359912 2.020000e-10 78.7
5 TraesCS6D01G379800 chr6A 96.467 3510 90 16 2813 6310 607953644 607957131 0.000000e+00 5764.0
6 TraesCS6D01G379800 chr6A 91.904 2038 91 34 1 1989 607950809 607952821 0.000000e+00 2782.0
7 TraesCS6D01G379800 chr6A 98.037 917 15 1 1867 2780 607952741 607953657 0.000000e+00 1591.0
8 TraesCS6D01G379800 chr6A 91.874 443 34 2 6301 6741 602912289 602911847 9.600000e-173 617.0
9 TraesCS6D01G379800 chr6A 91.954 87 7 0 1867 1953 607952783 607952869 9.180000e-24 122.0
10 TraesCS6D01G379800 chr6B 96.140 1710 54 6 2811 4518 702826986 702828685 0.000000e+00 2782.0
11 TraesCS6D01G379800 chr6B 95.860 1546 46 11 4724 6264 702829026 702830558 0.000000e+00 2484.0
12 TraesCS6D01G379800 chr6B 91.879 1650 74 25 377 1995 702824549 702826169 0.000000e+00 2250.0
13 TraesCS6D01G379800 chr6B 96.798 937 27 1 1867 2800 702826083 702827019 0.000000e+00 1561.0
14 TraesCS6D01G379800 chr6B 89.492 295 7 10 62 347 702823914 702824193 1.080000e-92 351.0
15 TraesCS6D01G379800 chr6B 91.875 160 10 2 4520 4678 702828755 702828912 3.160000e-53 220.0
16 TraesCS6D01G379800 chr6B 94.253 87 5 0 1867 1953 702826125 702826211 4.240000e-27 134.0
17 TraesCS6D01G379800 chr6B 100.000 45 0 0 1867 1911 702826167 702826211 4.330000e-12 84.2
18 TraesCS6D01G379800 chr1B 83.811 1291 115 40 2969 4219 655101572 655100336 0.000000e+00 1140.0
19 TraesCS6D01G379800 chr1B 90.932 397 36 0 6345 6741 340459313 340458917 9.950000e-148 534.0
20 TraesCS6D01G379800 chr1B 85.449 323 34 8 4977 5294 655101894 655101580 2.340000e-84 324.0
21 TraesCS6D01G379800 chr1D 84.986 706 65 11 2962 3666 471300325 471299660 0.000000e+00 678.0
22 TraesCS6D01G379800 chr1D 81.593 766 85 38 4724 5468 471295169 471294439 3.500000e-162 582.0
23 TraesCS6D01G379800 chr1D 84.755 551 76 6 3762 4308 471433335 471433881 4.600000e-151 545.0
24 TraesCS6D01G379800 chr1D 82.819 518 70 10 4934 5438 471299652 471299141 4.800000e-121 446.0
25 TraesCS6D01G379800 chr1D 86.692 263 29 6 5035 5293 471300593 471300333 3.080000e-73 287.0
26 TraesCS6D01G379800 chr1A 92.791 430 31 0 6312 6741 20083774 20084203 2.060000e-174 623.0
27 TraesCS6D01G379800 chr1A 92.396 434 32 1 6309 6741 312722544 312722111 9.600000e-173 617.0
28 TraesCS6D01G379800 chr1A 83.636 440 63 5 6309 6741 58425300 58424863 8.140000e-109 405.0
29 TraesCS6D01G379800 chr2B 93.285 417 27 1 6309 6724 476415206 476414790 1.240000e-171 614.0
30 TraesCS6D01G379800 chr3A 90.278 432 40 1 6310 6741 624562412 624561983 1.270000e-156 564.0
31 TraesCS6D01G379800 chr5B 94.236 347 20 0 6395 6741 617167605 617167259 1.290000e-146 531.0
32 TraesCS6D01G379800 chr4D 87.991 458 40 5 6298 6741 35481049 35481505 1.670000e-145 527.0
33 TraesCS6D01G379800 chr7A 84.161 423 42 15 4975 5394 704893498 704893098 2.950000e-103 387.0
34 TraesCS6D01G379800 chr7A 76.712 146 30 4 4063 4206 237519436 237519293 2.020000e-10 78.7
35 TraesCS6D01G379800 chr7D 84.038 426 41 18 4975 5394 613449717 613449313 1.060000e-102 385.0
36 TraesCS6D01G379800 chr7D 85.057 261 27 9 4975 5229 29534949 29534695 8.680000e-64 255.0
37 TraesCS6D01G379800 chr7D 76.712 146 30 4 4063 4206 224055477 224055620 2.020000e-10 78.7
38 TraesCS6D01G379800 chr3D 85.821 268 28 7 4975 5237 461201987 461202249 6.660000e-70 276.0
39 TraesCS6D01G379800 chr7B 76.027 146 31 4 4063 4206 173864858 173865001 9.380000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G379800 chr6D 461353602 461360342 6740 False 4202.133333 12449 95.062000 1 6741 3 chr6D.!!$F3 6740
1 TraesCS6D01G379800 chr6A 607950809 607957131 6322 False 2564.750000 5764 94.590500 1 6310 4 chr6A.!!$F1 6309
2 TraesCS6D01G379800 chr6B 702823914 702830558 6644 False 1233.275000 2782 94.537125 62 6264 8 chr6B.!!$F1 6202
3 TraesCS6D01G379800 chr1B 655100336 655101894 1558 True 732.000000 1140 84.630000 2969 5294 2 chr1B.!!$R2 2325
4 TraesCS6D01G379800 chr1D 471433335 471433881 546 False 545.000000 545 84.755000 3762 4308 1 chr1D.!!$F1 546
5 TraesCS6D01G379800 chr1D 471294439 471300593 6154 True 498.250000 678 84.022500 2962 5468 4 chr1D.!!$R1 2506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 1188 0.250234 TCATCCAGTGCTTCTTCCCG 59.750 55.000 0.00 0.0 0.00 5.14 F
1080 1430 0.400213 TCATGGACCAGAACCACCAC 59.600 55.000 0.00 0.0 40.36 4.16 F
2859 3277 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.0 0.00 4.57 F
3546 3982 1.612950 CTCTGCAGCTCGGATCAGTAT 59.387 52.381 9.47 0.0 0.00 2.12 F
4628 5166 0.400594 ACTTTCTGCCCAGTACCACC 59.599 55.000 0.00 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2826 3244 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.0 0.00 3.66 R
2965 3383 1.684869 GCCTGCAAGTAAGGGGCATAA 60.685 52.381 6.04 0.0 42.08 1.90 R
3876 4325 1.065418 ACCTTCTGAATAACCCGGCAG 60.065 52.381 0.00 0.0 0.00 4.85 R
4897 5532 1.216122 GGCTCATCTTCACGATCTGC 58.784 55.000 0.00 0.0 0.00 4.26 R
6379 8673 0.036388 ATGCCGTGTAAGGGTGACTG 60.036 55.000 0.00 0.0 45.59 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
347 356 0.327964 CCCTCCAGGAATTCTCCCCT 60.328 60.000 5.23 0.00 43.64 4.79
353 362 2.109181 GAATTCTCCCCTCGCCCG 59.891 66.667 0.00 0.00 0.00 6.13
519 858 6.509523 TGGATTATTATTCTTCCCGGAGTT 57.490 37.500 0.73 0.00 0.00 3.01
553 892 1.497309 TTGCTTCCTCCCCAATCCGT 61.497 55.000 0.00 0.00 0.00 4.69
554 893 1.303282 GCTTCCTCCCCAATCCGTT 59.697 57.895 0.00 0.00 0.00 4.44
590 929 0.737367 TTCGCTGCTTCGATGGAGTG 60.737 55.000 22.16 22.16 38.37 3.51
624 965 5.762825 TGCTGATTTCTTGCCAGATAATC 57.237 39.130 12.04 12.04 32.59 1.75
679 1020 2.236146 GCCCCTAAAAGGTGGGATTTTG 59.764 50.000 0.00 0.00 46.15 2.44
682 1023 4.262851 CCCCTAAAAGGTGGGATTTTGTTG 60.263 45.833 0.00 0.00 46.15 3.33
684 1025 5.163248 CCCTAAAAGGTGGGATTTTGTTGTT 60.163 40.000 0.00 0.00 46.15 2.83
700 1041 2.065899 TGTTGTTGGGGTTCCTCTTG 57.934 50.000 0.00 0.00 0.00 3.02
701 1042 0.673985 GTTGTTGGGGTTCCTCTTGC 59.326 55.000 0.00 0.00 0.00 4.01
739 1080 5.542616 AGAGAAATTGACGAAATCAGCTG 57.457 39.130 7.63 7.63 38.99 4.24
833 1178 5.119279 CGTTTTCTCTGTAGTTCATCCAGTG 59.881 44.000 0.00 0.00 0.00 3.66
843 1188 0.250234 TCATCCAGTGCTTCTTCCCG 59.750 55.000 0.00 0.00 0.00 5.14
872 1217 5.227908 TCGTGTGTGTTCCTCTTTAATCTC 58.772 41.667 0.00 0.00 0.00 2.75
902 1247 3.947910 TTCGGAGTTCTAATCACCGTT 57.052 42.857 0.00 0.00 43.36 4.44
970 1317 1.002087 GAAGGAAGGAAACAGAGCCGA 59.998 52.381 0.00 0.00 0.00 5.54
986 1333 1.153823 CGACCGGCTAAGTGACCAG 60.154 63.158 0.00 0.00 0.00 4.00
1080 1430 0.400213 TCATGGACCAGAACCACCAC 59.600 55.000 0.00 0.00 40.36 4.16
1081 1431 0.955428 CATGGACCAGAACCACCACG 60.955 60.000 0.00 0.00 40.36 4.94
1082 1432 2.032071 GGACCAGAACCACCACGG 59.968 66.667 0.00 0.00 42.50 4.94
1083 1433 2.668550 GACCAGAACCACCACGGC 60.669 66.667 0.00 0.00 39.03 5.68
1084 1434 4.619227 ACCAGAACCACCACGGCG 62.619 66.667 4.80 4.80 39.03 6.46
1308 1661 2.614829 ACTACAACAACGAGCACCTT 57.385 45.000 0.00 0.00 0.00 3.50
1405 1758 2.325364 ATCGGGGACTGGAGGAGGA 61.325 63.158 0.00 0.00 33.92 3.71
1521 1874 1.467920 GCAGAGGTGAAAGGAATGGG 58.532 55.000 0.00 0.00 0.00 4.00
1764 2134 7.308435 GCTACTTCTACAATGCATCACTTTTT 58.692 34.615 0.00 0.00 0.00 1.94
1915 2288 4.479619 CTTTTGAGAGCCCAAATCTTTCG 58.520 43.478 0.00 0.00 36.12 3.46
2266 2681 4.525912 AATGGTTGAAGGCAGAAATGTC 57.474 40.909 0.00 0.00 0.00 3.06
2267 2682 2.942804 TGGTTGAAGGCAGAAATGTCA 58.057 42.857 0.00 0.00 0.00 3.58
2412 2827 0.659957 GGTGGCGATCAAAGAGATGC 59.340 55.000 0.00 0.00 37.00 3.91
2450 2868 6.013725 TCCAAAGGAGCATAGACAGTTTTCTA 60.014 38.462 0.00 0.00 32.56 2.10
2455 2873 5.578727 GGAGCATAGACAGTTTTCTACACAG 59.421 44.000 0.00 0.00 30.75 3.66
2458 2876 6.647067 AGCATAGACAGTTTTCTACACAGAAC 59.353 38.462 0.00 0.00 40.54 3.01
2585 3003 1.035139 AAGCAACAGCAAGTTCCCTG 58.965 50.000 0.00 0.00 38.74 4.45
2786 3204 3.041946 ACTCTCTCTCTCCCTCTCTCTC 58.958 54.545 0.00 0.00 0.00 3.20
2796 3214 3.309296 TCCCTCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
2799 3217 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
2800 3218 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
2801 3219 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2802 3220 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2803 3221 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2804 3222 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2805 3223 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2806 3224 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2807 3225 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2808 3226 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2809 3227 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2810 3228 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2811 3229 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2812 3230 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2813 3231 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2814 3232 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2815 3233 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2816 3234 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2817 3235 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2818 3236 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2819 3237 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2820 3238 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2821 3239 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2822 3240 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2823 3241 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2824 3242 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2825 3243 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2826 3244 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2859 3277 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
3546 3982 1.612950 CTCTGCAGCTCGGATCAGTAT 59.387 52.381 9.47 0.00 0.00 2.12
3876 4325 3.242413 CGCTGAGTACACAAATGTATGGC 60.242 47.826 0.00 0.00 43.21 4.40
4076 4535 7.582435 TCTGAAATTAGTTCGTGATCAGAAC 57.418 36.000 21.02 21.02 45.97 3.01
4453 4922 6.624710 TTTGTCGTTGAACAATTTCACTTG 57.375 33.333 0.00 0.00 41.64 3.16
4488 4957 1.821088 ATTAGTGGGAGGGATGGGTC 58.179 55.000 0.00 0.00 0.00 4.46
4628 5166 0.400594 ACTTTCTGCCCAGTACCACC 59.599 55.000 0.00 0.00 0.00 4.61
4646 5184 5.555966 ACCACCAAGTGTTTTGATTTGTTT 58.444 33.333 0.00 0.00 0.00 2.83
4660 5198 7.757941 TTGATTTGTTTGGTGTGATCTATCA 57.242 32.000 0.00 0.00 0.00 2.15
4661 5199 7.943079 TGATTTGTTTGGTGTGATCTATCAT 57.057 32.000 0.00 0.00 39.30 2.45
4670 5208 4.807834 GGTGTGATCTATCATATGCCGATG 59.192 45.833 0.00 0.00 39.30 3.84
4921 5556 2.542020 TCGTGAAGATGAGCCAACAA 57.458 45.000 0.00 0.00 0.00 2.83
5014 5649 2.813754 TGAAATGCTTGGCACTACTGAC 59.186 45.455 0.00 0.00 43.04 3.51
5560 6910 0.264657 ACCAGTTTCCAAAGCCCCTT 59.735 50.000 0.00 0.00 0.00 3.95
5593 6943 5.220739 CCTTACTGCAATTCATCCTTCTTCG 60.221 44.000 0.00 0.00 0.00 3.79
5628 6978 0.109597 GTCATGGAGGCGTTTGCTTG 60.110 55.000 0.00 0.00 42.25 4.01
5970 7535 6.845758 TTTTCCCTCTTCGAGTAAGATACA 57.154 37.500 0.00 0.00 43.32 2.29
5971 7536 7.419711 TTTTCCCTCTTCGAGTAAGATACAT 57.580 36.000 0.00 0.00 43.32 2.29
5974 7539 7.925043 TCCCTCTTCGAGTAAGATACATATC 57.075 40.000 0.00 0.00 43.32 1.63
6058 7631 3.398292 AGATGATGATGGGAAGCAAGGAT 59.602 43.478 0.00 0.00 0.00 3.24
6090 7663 2.610232 CCTTTTGCCTTGGGTTTCATCG 60.610 50.000 0.00 0.00 0.00 3.84
6221 7848 5.220381 GCCTGTCTATGAAATGAATGCATG 58.780 41.667 0.00 0.00 34.26 4.06
6222 7849 5.220381 CCTGTCTATGAAATGAATGCATGC 58.780 41.667 11.82 11.82 34.26 4.06
6223 7850 5.221165 CCTGTCTATGAAATGAATGCATGCA 60.221 40.000 25.04 25.04 34.26 3.96
6224 7851 5.827666 TGTCTATGAAATGAATGCATGCAG 58.172 37.500 26.69 7.66 34.26 4.41
6227 7854 3.159353 TGAAATGAATGCATGCAGCTC 57.841 42.857 26.69 23.09 45.94 4.09
6228 7855 2.758423 TGAAATGAATGCATGCAGCTCT 59.242 40.909 26.69 10.22 45.94 4.09
6229 7856 2.871182 AATGAATGCATGCAGCTCTG 57.129 45.000 26.69 0.00 45.94 3.35
6231 7858 0.034863 TGAATGCATGCAGCTCTGGA 60.035 50.000 26.69 6.74 45.94 3.86
6233 7860 1.065701 GAATGCATGCAGCTCTGGAAG 59.934 52.381 26.69 0.00 45.94 3.46
6235 7862 0.614812 TGCATGCAGCTCTGGAAGTA 59.385 50.000 18.46 0.00 45.94 2.24
6236 7863 1.012841 GCATGCAGCTCTGGAAGTAC 58.987 55.000 14.21 0.00 41.15 2.73
6237 7864 1.661341 CATGCAGCTCTGGAAGTACC 58.339 55.000 0.00 0.00 33.77 3.34
6278 7905 3.303593 CGTCTATGAAATGTCAGCATGCC 60.304 47.826 15.66 0.00 37.14 4.40
6338 8632 4.863152 CAAAACTGAGGCAAAAGGTTTG 57.137 40.909 9.29 9.29 42.77 2.93
6339 8633 2.602257 AACTGAGGCAAAAGGTTTGC 57.398 45.000 15.64 15.64 44.22 3.68
6353 8647 9.546428 GCAAAAGGTTTGCCTCATATATTAATT 57.454 29.630 13.49 0.00 46.33 1.40
6358 8652 9.586732 AGGTTTGCCTCATATATTAATTAAGCA 57.413 29.630 3.94 2.63 42.67 3.91
6359 8653 9.846248 GGTTTGCCTCATATATTAATTAAGCAG 57.154 33.333 3.94 0.00 0.00 4.24
6363 8657 9.881649 TGCCTCATATATTAATTAAGCAGAGAG 57.118 33.333 3.94 8.02 0.00 3.20
6364 8658 9.323985 GCCTCATATATTAATTAAGCAGAGAGG 57.676 37.037 22.15 22.15 39.40 3.69
6366 8660 9.829507 CTCATATATTAATTAAGCAGAGAGGGG 57.170 37.037 3.94 0.00 0.00 4.79
6367 8661 9.560860 TCATATATTAATTAAGCAGAGAGGGGA 57.439 33.333 3.94 0.00 0.00 4.81
6368 8662 9.829507 CATATATTAATTAAGCAGAGAGGGGAG 57.170 37.037 3.94 0.00 0.00 4.30
6370 8664 6.582929 ATTAATTAAGCAGAGAGGGGAGTT 57.417 37.500 3.94 0.00 0.00 3.01
6373 8667 1.439543 AAGCAGAGAGGGGAGTTTGT 58.560 50.000 0.00 0.00 0.00 2.83
6374 8668 1.439543 AGCAGAGAGGGGAGTTTGTT 58.560 50.000 0.00 0.00 0.00 2.83
6375 8669 2.621070 AGCAGAGAGGGGAGTTTGTTA 58.379 47.619 0.00 0.00 0.00 2.41
6376 8670 2.303311 AGCAGAGAGGGGAGTTTGTTAC 59.697 50.000 0.00 0.00 0.00 2.50
6377 8671 2.038557 GCAGAGAGGGGAGTTTGTTACA 59.961 50.000 0.00 0.00 0.00 2.41
6379 8673 4.065789 CAGAGAGGGGAGTTTGTTACAAC 58.934 47.826 0.00 0.00 0.00 3.32
6380 8674 3.714798 AGAGAGGGGAGTTTGTTACAACA 59.285 43.478 0.00 0.00 37.08 3.33
6381 8675 4.065789 GAGAGGGGAGTTTGTTACAACAG 58.934 47.826 0.00 0.00 40.50 3.16
6383 8677 3.813724 GAGGGGAGTTTGTTACAACAGTC 59.186 47.826 0.00 2.48 40.50 3.51
6384 8678 3.201266 AGGGGAGTTTGTTACAACAGTCA 59.799 43.478 0.00 0.00 40.50 3.41
6386 8680 3.314357 GGGAGTTTGTTACAACAGTCACC 59.686 47.826 0.00 3.17 40.50 4.02
6387 8681 3.314357 GGAGTTTGTTACAACAGTCACCC 59.686 47.826 0.00 0.00 40.50 4.61
6388 8682 4.196971 GAGTTTGTTACAACAGTCACCCT 58.803 43.478 0.00 0.00 40.50 4.34
6391 8685 5.587443 AGTTTGTTACAACAGTCACCCTTAC 59.413 40.000 0.00 0.00 40.50 2.34
6392 8686 4.757019 TGTTACAACAGTCACCCTTACA 57.243 40.909 0.00 0.00 34.30 2.41
6393 8687 4.444536 TGTTACAACAGTCACCCTTACAC 58.555 43.478 0.00 0.00 34.30 2.90
6394 8688 2.234300 ACAACAGTCACCCTTACACG 57.766 50.000 0.00 0.00 0.00 4.49
6396 8690 0.250166 AACAGTCACCCTTACACGGC 60.250 55.000 0.00 0.00 0.00 5.68
6397 8691 1.369692 CAGTCACCCTTACACGGCA 59.630 57.895 0.00 0.00 0.00 5.69
6398 8692 0.036388 CAGTCACCCTTACACGGCAT 60.036 55.000 0.00 0.00 0.00 4.40
6399 8693 0.036388 AGTCACCCTTACACGGCATG 60.036 55.000 0.00 0.00 0.00 4.06
6400 8694 0.036765 GTCACCCTTACACGGCATGA 60.037 55.000 0.00 0.00 0.00 3.07
6401 8695 0.687920 TCACCCTTACACGGCATGAA 59.312 50.000 0.00 0.00 0.00 2.57
6402 8696 1.072489 TCACCCTTACACGGCATGAAA 59.928 47.619 0.00 0.00 0.00 2.69
6403 8697 1.468520 CACCCTTACACGGCATGAAAG 59.531 52.381 0.00 0.00 0.00 2.62
6405 8699 2.026262 ACCCTTACACGGCATGAAAGAT 60.026 45.455 0.00 0.00 0.00 2.40
6406 8700 3.016736 CCCTTACACGGCATGAAAGATT 58.983 45.455 0.00 0.00 0.00 2.40
6407 8701 4.196193 CCCTTACACGGCATGAAAGATTA 58.804 43.478 0.00 0.00 0.00 1.75
6409 8703 4.876107 CCTTACACGGCATGAAAGATTACT 59.124 41.667 0.00 0.00 0.00 2.24
6410 8704 5.006746 CCTTACACGGCATGAAAGATTACTC 59.993 44.000 0.00 0.00 0.00 2.59
6411 8705 3.937814 ACACGGCATGAAAGATTACTCA 58.062 40.909 0.00 0.00 0.00 3.41
6412 8706 3.684788 ACACGGCATGAAAGATTACTCAC 59.315 43.478 0.00 0.00 0.00 3.51
6414 8708 3.935203 ACGGCATGAAAGATTACTCACAG 59.065 43.478 0.00 0.00 0.00 3.66
6416 8710 4.631377 CGGCATGAAAGATTACTCACAGAA 59.369 41.667 0.00 0.00 0.00 3.02
6418 8712 6.348458 CGGCATGAAAGATTACTCACAGAAAA 60.348 38.462 0.00 0.00 0.00 2.29
6427 8721 8.779354 AGATTACTCACAGAAAATAACAGACC 57.221 34.615 0.00 0.00 0.00 3.85
6428 8722 7.824779 AGATTACTCACAGAAAATAACAGACCC 59.175 37.037 0.00 0.00 0.00 4.46
6429 8723 5.568620 ACTCACAGAAAATAACAGACCCT 57.431 39.130 0.00 0.00 0.00 4.34
6430 8724 6.681729 ACTCACAGAAAATAACAGACCCTA 57.318 37.500 0.00 0.00 0.00 3.53
6432 8726 6.270231 ACTCACAGAAAATAACAGACCCTAGT 59.730 38.462 0.00 0.00 0.00 2.57
6435 8729 7.660208 TCACAGAAAATAACAGACCCTAGTTTC 59.340 37.037 0.00 0.00 34.11 2.78
6436 8730 7.661847 CACAGAAAATAACAGACCCTAGTTTCT 59.338 37.037 0.00 0.00 40.94 2.52
6439 8733 9.067986 AGAAAATAACAGACCCTAGTTTCTTTG 57.932 33.333 0.00 0.00 38.57 2.77
6441 8735 4.439253 AACAGACCCTAGTTTCTTTGCT 57.561 40.909 0.00 0.00 0.00 3.91
6442 8736 4.009370 ACAGACCCTAGTTTCTTTGCTC 57.991 45.455 0.00 0.00 0.00 4.26
6443 8737 3.244596 ACAGACCCTAGTTTCTTTGCTCC 60.245 47.826 0.00 0.00 0.00 4.70
6444 8738 2.028020 AGACCCTAGTTTCTTTGCTCCG 60.028 50.000 0.00 0.00 0.00 4.63
6445 8739 1.003233 ACCCTAGTTTCTTTGCTCCGG 59.997 52.381 0.00 0.00 0.00 5.14
6446 8740 1.087501 CCTAGTTTCTTTGCTCCGGC 58.912 55.000 0.00 0.00 39.26 6.13
6447 8741 0.721718 CTAGTTTCTTTGCTCCGGCG 59.278 55.000 0.00 0.00 42.25 6.46
6448 8742 0.672401 TAGTTTCTTTGCTCCGGCGG 60.672 55.000 22.51 22.51 42.25 6.13
6449 8743 2.112297 TTTCTTTGCTCCGGCGGT 59.888 55.556 27.32 0.00 42.25 5.68
6450 8744 2.258013 TTTCTTTGCTCCGGCGGTG 61.258 57.895 27.32 24.90 42.25 4.94
6451 8745 2.668185 TTTCTTTGCTCCGGCGGTGA 62.668 55.000 30.14 9.85 42.25 4.02
6452 8746 3.423154 CTTTGCTCCGGCGGTGAC 61.423 66.667 30.14 20.61 42.25 3.67
6459 8753 4.323477 CCGGCGGTGACCCAAAGA 62.323 66.667 19.97 0.00 0.00 2.52
6460 8754 2.046314 CGGCGGTGACCCAAAGAT 60.046 61.111 0.00 0.00 0.00 2.40
6462 8756 1.241315 CGGCGGTGACCCAAAGATTT 61.241 55.000 0.00 0.00 0.00 2.17
6463 8757 0.243636 GGCGGTGACCCAAAGATTTG 59.756 55.000 0.00 0.00 37.90 2.32
6465 8759 0.243636 CGGTGACCCAAAGATTTGCC 59.756 55.000 0.00 0.00 36.86 4.52
6466 8760 1.632589 GGTGACCCAAAGATTTGCCT 58.367 50.000 0.00 0.00 36.86 4.75
6467 8761 1.546029 GGTGACCCAAAGATTTGCCTC 59.454 52.381 0.00 0.00 36.86 4.70
6468 8762 1.200020 GTGACCCAAAGATTTGCCTCG 59.800 52.381 0.00 0.00 36.86 4.63
6469 8763 1.202879 TGACCCAAAGATTTGCCTCGT 60.203 47.619 0.00 0.00 36.86 4.18
6471 8765 3.078837 GACCCAAAGATTTGCCTCGTTA 58.921 45.455 0.00 0.00 36.86 3.18
6472 8766 3.081804 ACCCAAAGATTTGCCTCGTTAG 58.918 45.455 0.00 0.00 36.86 2.34
6473 8767 3.081804 CCCAAAGATTTGCCTCGTTAGT 58.918 45.455 0.00 0.00 36.86 2.24
6474 8768 3.119849 CCCAAAGATTTGCCTCGTTAGTG 60.120 47.826 0.00 0.00 36.86 2.74
6475 8769 3.751175 CCAAAGATTTGCCTCGTTAGTGA 59.249 43.478 0.00 0.00 36.86 3.41
6476 8770 4.396166 CCAAAGATTTGCCTCGTTAGTGAT 59.604 41.667 0.00 0.00 36.86 3.06
6477 8771 5.447818 CCAAAGATTTGCCTCGTTAGTGATC 60.448 44.000 0.00 0.00 36.86 2.92
6478 8772 4.471904 AGATTTGCCTCGTTAGTGATCA 57.528 40.909 0.00 0.00 0.00 2.92
6480 8774 6.161855 AGATTTGCCTCGTTAGTGATCATA 57.838 37.500 0.00 0.00 0.00 2.15
6481 8775 6.219473 AGATTTGCCTCGTTAGTGATCATAG 58.781 40.000 0.00 0.00 0.00 2.23
6482 8776 5.339008 TTTGCCTCGTTAGTGATCATAGT 57.661 39.130 0.00 0.00 0.00 2.12
6483 8777 4.307443 TGCCTCGTTAGTGATCATAGTG 57.693 45.455 0.00 0.00 0.00 2.74
6484 8778 3.951680 TGCCTCGTTAGTGATCATAGTGA 59.048 43.478 0.00 0.00 0.00 3.41
6486 8780 4.541779 CCTCGTTAGTGATCATAGTGAGC 58.458 47.826 0.00 0.00 32.56 4.26
6487 8781 4.036852 CCTCGTTAGTGATCATAGTGAGCA 59.963 45.833 0.00 0.00 40.87 4.26
6488 8782 5.450550 CCTCGTTAGTGATCATAGTGAGCAA 60.451 44.000 0.00 0.00 44.97 3.91
6489 8783 5.961272 TCGTTAGTGATCATAGTGAGCAAA 58.039 37.500 0.00 0.00 44.97 3.68
6491 8785 6.871492 TCGTTAGTGATCATAGTGAGCAAAAA 59.129 34.615 0.00 0.00 44.97 1.94
6492 8786 7.549134 TCGTTAGTGATCATAGTGAGCAAAAAT 59.451 33.333 0.00 0.00 44.97 1.82
6493 8787 7.637519 CGTTAGTGATCATAGTGAGCAAAAATG 59.362 37.037 0.00 0.37 44.97 2.32
6496 8790 3.763097 TCATAGTGAGCAAAAATGGCG 57.237 42.857 0.00 0.00 36.08 5.69
6500 8794 0.667184 GTGAGCAAAAATGGCGGTGG 60.667 55.000 0.00 0.00 36.08 4.61
6501 8795 1.079888 GAGCAAAAATGGCGGTGGG 60.080 57.895 0.00 0.00 36.08 4.61
6502 8796 2.047370 GCAAAAATGGCGGTGGGG 60.047 61.111 0.00 0.00 0.00 4.96
6511 8805 4.547367 GCGGTGGGGCGCTCTTAT 62.547 66.667 7.48 0.00 0.00 1.73
6513 8807 2.908015 GGTGGGGCGCTCTTATGA 59.092 61.111 7.48 0.00 0.00 2.15
6514 8808 1.523938 GGTGGGGCGCTCTTATGAC 60.524 63.158 7.48 0.00 0.00 3.06
6515 8809 1.883084 GTGGGGCGCTCTTATGACG 60.883 63.158 7.48 0.00 0.00 4.35
6516 8810 2.280186 GGGGCGCTCTTATGACGG 60.280 66.667 7.48 0.00 0.00 4.79
6517 8811 2.792947 GGGGCGCTCTTATGACGGA 61.793 63.158 7.48 0.00 0.00 4.69
6520 8814 0.102481 GGCGCTCTTATGACGGAAGA 59.898 55.000 7.64 0.00 0.00 2.87
6521 8815 1.201343 GCGCTCTTATGACGGAAGAC 58.799 55.000 0.00 0.00 0.00 3.01
6522 8816 1.841450 CGCTCTTATGACGGAAGACC 58.159 55.000 0.00 0.00 0.00 3.85
6523 8817 1.536284 CGCTCTTATGACGGAAGACCC 60.536 57.143 0.00 0.00 0.00 4.46
6532 8826 3.920031 GGAAGACCCGGGCATTTC 58.080 61.111 24.08 20.82 0.00 2.17
6533 8827 1.303282 GGAAGACCCGGGCATTTCT 59.697 57.895 24.08 13.72 0.00 2.52
6535 8829 1.545841 GAAGACCCGGGCATTTCTTT 58.454 50.000 24.08 6.81 0.00 2.52
6536 8830 1.893137 GAAGACCCGGGCATTTCTTTT 59.107 47.619 24.08 0.13 0.00 2.27
6537 8831 2.891191 AGACCCGGGCATTTCTTTTA 57.109 45.000 24.08 0.00 0.00 1.52
6539 8833 3.708451 AGACCCGGGCATTTCTTTTATT 58.292 40.909 24.08 0.00 0.00 1.40
6540 8834 3.699538 AGACCCGGGCATTTCTTTTATTC 59.300 43.478 24.08 5.47 0.00 1.75
6541 8835 2.764010 ACCCGGGCATTTCTTTTATTCC 59.236 45.455 24.08 0.00 0.00 3.01
6542 8836 2.763448 CCCGGGCATTTCTTTTATTCCA 59.237 45.455 8.08 0.00 0.00 3.53
6543 8837 3.387699 CCCGGGCATTTCTTTTATTCCAT 59.612 43.478 8.08 0.00 0.00 3.41
6544 8838 4.586841 CCCGGGCATTTCTTTTATTCCATA 59.413 41.667 8.08 0.00 0.00 2.74
6545 8839 5.245977 CCCGGGCATTTCTTTTATTCCATAT 59.754 40.000 8.08 0.00 0.00 1.78
6547 8841 6.158598 CGGGCATTTCTTTTATTCCATATGG 58.841 40.000 16.25 16.25 0.00 2.74
6551 8845 7.201992 GGCATTTCTTTTATTCCATATGGTCCA 60.202 37.037 21.28 7.50 36.34 4.02
6553 8847 9.701098 CATTTCTTTTATTCCATATGGTCCATG 57.299 33.333 21.28 0.00 36.34 3.66
6554 8848 9.659135 ATTTCTTTTATTCCATATGGTCCATGA 57.341 29.630 21.28 9.43 36.34 3.07
6555 8849 8.463930 TTCTTTTATTCCATATGGTCCATGAC 57.536 34.615 21.28 0.00 36.34 3.06
6558 8852 3.576078 TTCCATATGGTCCATGACACC 57.424 47.619 21.28 6.81 33.68 4.16
6562 8856 3.573673 TGGTCCATGACACCAGCA 58.426 55.556 11.42 0.00 39.11 4.41
6563 8857 2.077579 TGGTCCATGACACCAGCAT 58.922 52.632 11.42 0.00 39.11 3.79
6564 8858 0.322726 TGGTCCATGACACCAGCATG 60.323 55.000 11.42 0.00 39.11 4.06
6575 8869 3.200593 CAGCATGGTCAGCGAGGC 61.201 66.667 0.00 0.00 37.01 4.70
6576 8870 4.479993 AGCATGGTCAGCGAGGCC 62.480 66.667 0.00 0.00 44.53 5.19
6587 8881 4.208632 CGAGGCCATCGCTTTTCT 57.791 55.556 5.01 0.00 45.98 2.52
6588 8882 1.717937 CGAGGCCATCGCTTTTCTG 59.282 57.895 5.01 0.00 45.98 3.02
6589 8883 1.021390 CGAGGCCATCGCTTTTCTGT 61.021 55.000 5.01 0.00 45.98 3.41
6591 8885 0.883833 AGGCCATCGCTTTTCTGTTG 59.116 50.000 5.01 0.00 34.44 3.33
6592 8886 0.109132 GGCCATCGCTTTTCTGTTGG 60.109 55.000 0.00 0.00 34.44 3.77
6593 8887 0.109132 GCCATCGCTTTTCTGTTGGG 60.109 55.000 0.00 0.00 0.00 4.12
6594 8888 0.527565 CCATCGCTTTTCTGTTGGGG 59.472 55.000 0.00 0.00 0.00 4.96
6596 8890 1.200020 CATCGCTTTTCTGTTGGGGAC 59.800 52.381 0.00 0.00 0.00 4.46
6598 8892 0.875059 CGCTTTTCTGTTGGGGACTC 59.125 55.000 0.00 0.00 0.00 3.36
6599 8893 1.248486 GCTTTTCTGTTGGGGACTCC 58.752 55.000 0.00 0.00 0.00 3.85
6600 8894 1.202940 GCTTTTCTGTTGGGGACTCCT 60.203 52.381 0.00 0.00 36.20 3.69
6601 8895 2.508526 CTTTTCTGTTGGGGACTCCTG 58.491 52.381 0.00 0.00 36.20 3.86
6602 8896 0.110486 TTTCTGTTGGGGACTCCTGC 59.890 55.000 0.00 0.00 36.20 4.85
6603 8897 2.046892 CTGTTGGGGACTCCTGCG 60.047 66.667 0.00 0.00 36.20 5.18
6604 8898 4.329545 TGTTGGGGACTCCTGCGC 62.330 66.667 0.00 0.00 36.20 6.09
6613 8907 4.514577 CTCCTGCGCCGGTTCGAT 62.515 66.667 17.97 0.00 0.00 3.59
6614 8908 4.077184 TCCTGCGCCGGTTCGATT 62.077 61.111 17.97 0.00 0.00 3.34
6617 8911 2.666862 TGCGCCGGTTCGATTTGT 60.667 55.556 4.18 0.00 0.00 2.83
6618 8912 2.097728 GCGCCGGTTCGATTTGTC 59.902 61.111 1.90 0.00 0.00 3.18
6620 8914 2.030401 CGCCGGTTCGATTTGTCCA 61.030 57.895 1.90 0.00 0.00 4.02
6623 8917 0.604243 CCGGTTCGATTTGTCCACCA 60.604 55.000 0.00 0.00 0.00 4.17
6625 8919 1.810151 CGGTTCGATTTGTCCACCAAT 59.190 47.619 1.46 0.00 31.81 3.16
6628 8922 3.506067 GGTTCGATTTGTCCACCAATTCT 59.494 43.478 0.00 0.00 33.32 2.40
6629 8923 4.022329 GGTTCGATTTGTCCACCAATTCTT 60.022 41.667 0.00 0.00 33.32 2.52
6630 8924 4.764679 TCGATTTGTCCACCAATTCTTG 57.235 40.909 0.00 0.00 33.32 3.02
6631 8925 4.393834 TCGATTTGTCCACCAATTCTTGA 58.606 39.130 0.00 0.00 33.32 3.02
6632 8926 5.009631 TCGATTTGTCCACCAATTCTTGAT 58.990 37.500 0.00 0.00 33.32 2.57
6633 8927 5.097529 CGATTTGTCCACCAATTCTTGATG 58.902 41.667 0.00 0.00 33.32 3.07
6634 8928 4.870123 TTTGTCCACCAATTCTTGATGG 57.130 40.909 0.00 0.00 42.60 3.51
6635 8929 3.805066 TGTCCACCAATTCTTGATGGA 57.195 42.857 0.00 0.00 39.12 3.41
6636 8930 4.111255 TGTCCACCAATTCTTGATGGAA 57.889 40.909 4.51 0.00 41.05 3.53
6638 8932 4.280677 TGTCCACCAATTCTTGATGGAAAC 59.719 41.667 4.51 0.00 41.05 2.78
6639 8933 8.992457 TTTGTCCACCAATTCTTGATGGAAACA 61.992 37.037 4.51 0.00 41.05 2.83
6653 8947 2.170166 GGAAACATCCAGATGCCACAA 58.830 47.619 7.56 0.00 42.39 3.33
6656 8950 0.994247 ACATCCAGATGCCACAAGGA 59.006 50.000 7.56 0.00 42.39 3.36
6657 8951 1.064906 ACATCCAGATGCCACAAGGAG 60.065 52.381 7.56 0.00 42.39 3.69
6658 8952 0.549950 ATCCAGATGCCACAAGGAGG 59.450 55.000 0.00 0.00 36.89 4.30
6659 8953 0.842030 TCCAGATGCCACAAGGAGGT 60.842 55.000 0.00 0.00 36.89 3.85
6660 8954 0.679002 CCAGATGCCACAAGGAGGTG 60.679 60.000 0.00 0.00 36.89 4.00
6663 8957 0.678048 GATGCCACAAGGAGGTGTCC 60.678 60.000 0.00 0.00 44.33 4.02
6665 8959 1.380302 GCCACAAGGAGGTGTCCAT 59.620 57.895 0.00 0.00 46.80 3.41
6666 8960 0.251341 GCCACAAGGAGGTGTCCATT 60.251 55.000 0.00 0.00 46.80 3.16
6672 8966 3.117512 ACAAGGAGGTGTCCATTTGTTCT 60.118 43.478 0.00 0.00 46.80 3.01
6674 8968 4.559862 AGGAGGTGTCCATTTGTTCTAG 57.440 45.455 0.00 0.00 46.80 2.43
6675 8969 4.168101 AGGAGGTGTCCATTTGTTCTAGA 58.832 43.478 0.00 0.00 46.80 2.43
6676 8970 4.020128 AGGAGGTGTCCATTTGTTCTAGAC 60.020 45.833 0.00 0.00 46.80 2.59
6677 8971 3.926616 AGGTGTCCATTTGTTCTAGACG 58.073 45.455 0.00 0.00 0.00 4.18
6678 8972 3.000727 GGTGTCCATTTGTTCTAGACGG 58.999 50.000 0.00 0.00 0.00 4.79
6679 8973 3.306502 GGTGTCCATTTGTTCTAGACGGA 60.307 47.826 0.00 0.00 0.00 4.69
6680 8974 4.312443 GTGTCCATTTGTTCTAGACGGAA 58.688 43.478 0.00 0.00 0.00 4.30
6681 8975 4.935808 GTGTCCATTTGTTCTAGACGGAAT 59.064 41.667 0.00 0.00 0.00 3.01
6682 8976 5.411669 GTGTCCATTTGTTCTAGACGGAATT 59.588 40.000 0.00 0.00 0.00 2.17
6683 8977 6.001460 TGTCCATTTGTTCTAGACGGAATTT 58.999 36.000 0.00 0.00 0.00 1.82
6684 8978 6.148811 TGTCCATTTGTTCTAGACGGAATTTC 59.851 38.462 0.00 0.00 0.00 2.17
6685 8979 6.371825 GTCCATTTGTTCTAGACGGAATTTCT 59.628 38.462 0.00 0.00 0.00 2.52
6686 8980 6.594159 TCCATTTGTTCTAGACGGAATTTCTC 59.406 38.462 0.00 0.00 0.00 2.87
6688 8982 7.413438 CCATTTGTTCTAGACGGAATTTCTCAG 60.413 40.741 0.00 0.00 0.00 3.35
6689 8983 5.723672 TGTTCTAGACGGAATTTCTCAGT 57.276 39.130 0.00 0.00 34.88 3.41
6690 8984 5.470368 TGTTCTAGACGGAATTTCTCAGTG 58.530 41.667 0.00 0.00 32.01 3.66
6692 8986 5.312120 TCTAGACGGAATTTCTCAGTGAC 57.688 43.478 0.00 0.00 32.01 3.67
6694 8988 2.632996 AGACGGAATTTCTCAGTGACCA 59.367 45.455 0.00 0.00 32.01 4.02
6695 8989 3.261897 AGACGGAATTTCTCAGTGACCAT 59.738 43.478 0.00 0.00 32.01 3.55
6696 8990 3.600388 ACGGAATTTCTCAGTGACCATC 58.400 45.455 0.00 0.00 30.51 3.51
6697 8991 3.261897 ACGGAATTTCTCAGTGACCATCT 59.738 43.478 0.00 0.00 30.51 2.90
6698 8992 4.256920 CGGAATTTCTCAGTGACCATCTT 58.743 43.478 0.00 0.00 0.00 2.40
6699 8993 4.331168 CGGAATTTCTCAGTGACCATCTTC 59.669 45.833 0.00 0.00 0.00 2.87
6700 8994 4.637977 GGAATTTCTCAGTGACCATCTTCC 59.362 45.833 0.00 0.00 0.00 3.46
6702 8996 4.705110 TTTCTCAGTGACCATCTTCCAA 57.295 40.909 0.00 0.00 0.00 3.53
6703 8997 4.705110 TTCTCAGTGACCATCTTCCAAA 57.295 40.909 0.00 0.00 0.00 3.28
6704 8998 4.277515 TCTCAGTGACCATCTTCCAAAG 57.722 45.455 0.00 0.00 0.00 2.77
6706 9000 1.815003 CAGTGACCATCTTCCAAAGCC 59.185 52.381 0.00 0.00 0.00 4.35
6707 9001 0.804989 GTGACCATCTTCCAAAGCCG 59.195 55.000 0.00 0.00 0.00 5.52
6708 9002 0.400213 TGACCATCTTCCAAAGCCGT 59.600 50.000 0.00 0.00 0.00 5.68
6709 9003 1.626321 TGACCATCTTCCAAAGCCGTA 59.374 47.619 0.00 0.00 0.00 4.02
6710 9004 2.238646 TGACCATCTTCCAAAGCCGTAT 59.761 45.455 0.00 0.00 0.00 3.06
6711 9005 2.614057 GACCATCTTCCAAAGCCGTATG 59.386 50.000 0.00 0.00 0.00 2.39
6712 9006 1.949525 CCATCTTCCAAAGCCGTATGG 59.050 52.381 0.00 0.00 38.09 2.74
6719 9013 3.199677 TCCAAAGCCGTATGGAATAACG 58.800 45.455 4.73 0.00 42.61 3.18
6724 9018 2.234300 CCGTATGGAATAACGGCACT 57.766 50.000 0.00 0.00 36.94 4.40
6725 9019 2.557317 CCGTATGGAATAACGGCACTT 58.443 47.619 0.00 0.00 36.94 3.16
6726 9020 2.286833 CCGTATGGAATAACGGCACTTG 59.713 50.000 0.00 0.00 36.94 3.16
6727 9021 3.191669 CGTATGGAATAACGGCACTTGA 58.808 45.455 0.00 0.00 0.00 3.02
6728 9022 3.619483 CGTATGGAATAACGGCACTTGAA 59.381 43.478 0.00 0.00 0.00 2.69
6734 9028 4.915667 GGAATAACGGCACTTGAAGAAAAC 59.084 41.667 0.00 0.00 0.00 2.43
6735 9029 5.506649 GGAATAACGGCACTTGAAGAAAACA 60.507 40.000 0.00 0.00 0.00 2.83
6737 9031 3.354089 ACGGCACTTGAAGAAAACATG 57.646 42.857 0.00 0.00 0.00 3.21
6740 9034 3.383761 GGCACTTGAAGAAAACATGTGG 58.616 45.455 0.00 0.00 40.92 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.568007 TGCTAGGTGTTTTTAGCAACTGG 59.432 43.478 3.89 0.00 46.64 4.00
14 15 7.994425 TTGAGATGATTGCTAGGTGTTTTTA 57.006 32.000 0.00 0.00 0.00 1.52
20 21 8.618702 AATATCTTTGAGATGATTGCTAGGTG 57.381 34.615 0.82 0.00 35.37 4.00
55 56 8.850454 TTTTCTTGTTATGTTCTTTCTTTCGG 57.150 30.769 0.00 0.00 0.00 4.30
56 57 9.716507 TCTTTTCTTGTTATGTTCTTTCTTTCG 57.283 29.630 0.00 0.00 0.00 3.46
519 858 4.889409 AGGAAGCAAGAGAAACATCAACAA 59.111 37.500 0.00 0.00 0.00 2.83
590 929 1.187567 AATCAGCAAACCCACTGGCC 61.188 55.000 0.00 0.00 34.57 5.36
624 965 1.338020 GTTCAAGCAACTGAACCCCTG 59.662 52.381 12.78 0.00 46.29 4.45
679 1020 2.067365 AGAGGAACCCCAACAACAAC 57.933 50.000 0.00 0.00 33.88 3.32
682 1023 0.673985 GCAAGAGGAACCCCAACAAC 59.326 55.000 0.00 0.00 33.88 3.32
684 1025 0.178992 CAGCAAGAGGAACCCCAACA 60.179 55.000 0.00 0.00 33.88 3.33
700 1041 1.005630 CTACCCGGATAGCAGCAGC 60.006 63.158 0.73 0.00 42.56 5.25
701 1042 0.600557 CTCTACCCGGATAGCAGCAG 59.399 60.000 0.73 0.00 0.00 4.24
843 1188 1.527311 GAGGAACACACACGAAGCTTC 59.473 52.381 16.84 16.84 0.00 3.86
854 1199 4.039973 ACACCGAGATTAAAGAGGAACACA 59.960 41.667 0.00 0.00 0.00 3.72
856 1201 4.282449 TCACACCGAGATTAAAGAGGAACA 59.718 41.667 0.00 0.00 0.00 3.18
872 1217 2.413837 AGAACTCCGAATTTCACACCG 58.586 47.619 0.00 0.00 0.00 4.94
902 1247 1.896660 GAAACCAGCAAGCACCGGA 60.897 57.895 9.46 0.00 0.00 5.14
970 1317 2.291043 CCCTGGTCACTTAGCCGGT 61.291 63.158 1.90 0.00 0.00 5.28
1209 1559 3.825160 GAGGCCGCTGTTGTCCACA 62.825 63.158 0.00 0.00 0.00 4.17
1245 1598 2.176798 AGACAGAATCTCCTCCTCGGAT 59.823 50.000 0.00 0.00 42.12 4.18
1530 1883 2.126307 CACTCCGACGACTGCTGG 60.126 66.667 0.00 0.00 0.00 4.85
1764 2134 9.151471 GAGACTTACATGCTACAAAATAGTCAA 57.849 33.333 0.00 0.00 33.68 3.18
1765 2135 7.488150 CGAGACTTACATGCTACAAAATAGTCA 59.512 37.037 0.00 0.00 33.68 3.41
2266 2681 6.019237 CAGAACCATCATGATTACGAGAAGTG 60.019 42.308 5.16 0.00 0.00 3.16
2267 2682 6.045318 CAGAACCATCATGATTACGAGAAGT 58.955 40.000 5.16 0.00 0.00 3.01
2412 2827 4.672801 GCTCCTTTGGAACATTAAAGAGCG 60.673 45.833 0.00 0.00 39.30 5.03
2450 2868 7.161404 TCAGCATTATGAACTAAGTTCTGTGT 58.839 34.615 0.00 0.00 42.39 3.72
2455 2873 9.102757 TCTTCATCAGCATTATGAACTAAGTTC 57.897 33.333 0.00 0.00 42.26 3.01
2458 2876 7.307870 GGCTCTTCATCAGCATTATGAACTAAG 60.308 40.741 0.00 4.87 38.19 2.18
2585 3003 3.441163 CATTACCATGCTGTGATTGTGC 58.559 45.455 0.00 0.00 0.00 4.57
2675 3093 3.129287 CCAGGTACATCAATGTTTGAGCC 59.871 47.826 0.20 0.00 43.98 4.70
2786 3204 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2796 3214 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2799 3217 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2800 3218 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2801 3219 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2802 3220 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2803 3221 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2804 3222 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
2805 3223 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
2806 3224 4.648762 ACAGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
2807 3225 4.403752 CACAGAGAGAGAGAGAGAGAGAGA 59.596 50.000 0.00 0.00 0.00 3.10
2808 3226 4.161189 ACACAGAGAGAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
2809 3227 4.081476 CACACAGAGAGAGAGAGAGAGAGA 60.081 50.000 0.00 0.00 0.00 3.10
2810 3228 4.186926 CACACAGAGAGAGAGAGAGAGAG 58.813 52.174 0.00 0.00 0.00 3.20
2811 3229 3.582647 ACACACAGAGAGAGAGAGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
2812 3230 3.686241 CACACACAGAGAGAGAGAGAGAG 59.314 52.174 0.00 0.00 0.00 3.20
2813 3231 3.072330 ACACACACAGAGAGAGAGAGAGA 59.928 47.826 0.00 0.00 0.00 3.10
2814 3232 3.189080 CACACACACAGAGAGAGAGAGAG 59.811 52.174 0.00 0.00 0.00 3.20
2815 3233 3.145286 CACACACACAGAGAGAGAGAGA 58.855 50.000 0.00 0.00 0.00 3.10
2816 3234 2.884012 ACACACACACAGAGAGAGAGAG 59.116 50.000 0.00 0.00 0.00 3.20
2817 3235 2.620585 CACACACACACAGAGAGAGAGA 59.379 50.000 0.00 0.00 0.00 3.10
2818 3236 2.360483 ACACACACACACAGAGAGAGAG 59.640 50.000 0.00 0.00 0.00 3.20
2819 3237 2.099756 CACACACACACACAGAGAGAGA 59.900 50.000 0.00 0.00 0.00 3.10
2820 3238 2.159184 ACACACACACACACAGAGAGAG 60.159 50.000 0.00 0.00 0.00 3.20
2821 3239 1.824852 ACACACACACACACAGAGAGA 59.175 47.619 0.00 0.00 0.00 3.10
2822 3240 1.929169 CACACACACACACACAGAGAG 59.071 52.381 0.00 0.00 0.00 3.20
2823 3241 1.275010 ACACACACACACACACAGAGA 59.725 47.619 0.00 0.00 0.00 3.10
2824 3242 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
2825 3243 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
2826 3244 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
2859 3277 3.254166 CACAAGTCAGGAAACAATGGGAG 59.746 47.826 0.00 0.00 0.00 4.30
2965 3383 1.684869 GCCTGCAAGTAAGGGGCATAA 60.685 52.381 6.04 0.00 42.08 1.90
3546 3982 1.828595 TGCTGTATAAAGCGACTCCCA 59.171 47.619 10.36 0.00 46.65 4.37
3876 4325 1.065418 ACCTTCTGAATAACCCGGCAG 60.065 52.381 0.00 0.00 0.00 4.85
4076 4535 2.036958 TCTGGATTACATGGTTGCCG 57.963 50.000 0.00 0.00 0.00 5.69
4453 4922 8.154420 TCCCACTAATTTAATATACTAGGCCC 57.846 38.462 0.00 0.00 0.00 5.80
4488 4957 6.824305 ACTTGGTAGAAGAAATCCAACATG 57.176 37.500 0.00 0.00 36.23 3.21
4563 5100 9.367444 CACATTCGGTAATTAGAAACTACTTCT 57.633 33.333 0.00 0.00 46.52 2.85
4628 5166 6.146837 TCACACCAAACAAATCAAAACACTTG 59.853 34.615 0.00 0.00 0.00 3.16
4646 5184 3.831911 TCGGCATATGATAGATCACACCA 59.168 43.478 6.97 0.00 40.03 4.17
4897 5532 1.216122 GGCTCATCTTCACGATCTGC 58.784 55.000 0.00 0.00 0.00 4.26
4921 5556 4.932200 TCAACAACGTTGGAAGCAAATTTT 59.068 33.333 30.34 10.08 0.00 1.82
5014 5649 2.868583 CACCTGTAATGGCTCATTCTCG 59.131 50.000 4.01 0.00 35.54 4.04
5202 5844 5.818136 CTGAACAACTTCAGTTCCTCAAA 57.182 39.130 0.00 0.00 45.94 2.69
5322 5965 2.907910 CAGAAGACTGAAATTGCCCG 57.092 50.000 0.00 0.00 46.03 6.13
5546 6896 3.917300 TGACTAAAAGGGGCTTTGGAAA 58.083 40.909 0.00 0.00 33.64 3.13
5560 6910 7.283127 GGATGAATTGCAGTAAGGATGACTAAA 59.717 37.037 0.00 0.00 0.00 1.85
5593 6943 5.964758 TCCATGACCATGCATCTTAAAAAC 58.035 37.500 0.00 0.00 37.49 2.43
5628 6978 6.874288 AAGATATGCAGATTAGGAAGCAAC 57.126 37.500 0.00 0.00 40.76 4.17
5982 7553 8.796475 TCCATGCTTTGCCTTTCTTATATATTC 58.204 33.333 0.00 0.00 0.00 1.75
5983 7554 8.710749 TCCATGCTTTGCCTTTCTTATATATT 57.289 30.769 0.00 0.00 0.00 1.28
6058 7631 4.324254 CCAAGGCAAAAGGATCTACAGGTA 60.324 45.833 0.00 0.00 0.00 3.08
6090 7663 6.415573 ACAAGAGATGGAAACCTTATACACC 58.584 40.000 0.00 0.00 0.00 4.16
6247 7874 8.338259 GCTGACATTTCATAGACGAAACATAAT 58.662 33.333 0.00 0.00 37.69 1.28
6249 7876 6.816140 TGCTGACATTTCATAGACGAAACATA 59.184 34.615 0.00 0.00 37.69 2.29
6252 7879 5.530519 TGCTGACATTTCATAGACGAAAC 57.469 39.130 0.00 0.00 37.69 2.78
6253 7880 5.447683 GCATGCTGACATTTCATAGACGAAA 60.448 40.000 11.37 0.00 39.13 3.46
6254 7881 4.034394 GCATGCTGACATTTCATAGACGAA 59.966 41.667 11.37 0.00 32.87 3.85
6255 7882 3.557185 GCATGCTGACATTTCATAGACGA 59.443 43.478 11.37 0.00 32.87 4.20
6256 7883 3.303593 GGCATGCTGACATTTCATAGACG 60.304 47.826 18.92 0.00 32.87 4.18
6258 7885 2.874086 CGGCATGCTGACATTTCATAGA 59.126 45.455 22.55 0.00 32.87 1.98
6259 7886 2.603892 GCGGCATGCTGACATTTCATAG 60.604 50.000 30.67 1.32 41.73 2.23
6260 7887 1.334556 GCGGCATGCTGACATTTCATA 59.665 47.619 30.67 0.00 41.73 2.15
6261 7888 0.101759 GCGGCATGCTGACATTTCAT 59.898 50.000 30.67 0.00 41.73 2.57
6262 7889 1.507630 GCGGCATGCTGACATTTCA 59.492 52.632 30.67 0.00 41.73 2.69
6263 7890 4.389772 GCGGCATGCTGACATTTC 57.610 55.556 30.67 7.27 41.73 2.17
6315 8430 4.817318 AACCTTTTGCCTCAGTTTTGAA 57.183 36.364 0.00 0.00 31.69 2.69
6317 8432 3.063861 GCAAACCTTTTGCCTCAGTTTTG 59.936 43.478 11.77 0.00 39.38 2.44
6318 8433 3.270027 GCAAACCTTTTGCCTCAGTTTT 58.730 40.909 11.77 0.00 39.38 2.43
6319 8434 2.905075 GCAAACCTTTTGCCTCAGTTT 58.095 42.857 11.77 0.00 39.38 2.66
6338 8632 9.323985 CCTCTCTGCTTAATTAATATATGAGGC 57.676 37.037 16.54 8.44 0.00 4.70
6339 8633 9.829507 CCCTCTCTGCTTAATTAATATATGAGG 57.170 37.037 19.21 19.21 35.82 3.86
6340 8634 9.829507 CCCCTCTCTGCTTAATTAATATATGAG 57.170 37.037 0.00 4.94 0.00 2.90
6341 8635 9.560860 TCCCCTCTCTGCTTAATTAATATATGA 57.439 33.333 0.00 0.00 0.00 2.15
6342 8636 9.829507 CTCCCCTCTCTGCTTAATTAATATATG 57.170 37.037 0.00 0.00 0.00 1.78
6344 8638 8.974292 ACTCCCCTCTCTGCTTAATTAATATA 57.026 34.615 0.00 0.00 0.00 0.86
6345 8639 7.880265 ACTCCCCTCTCTGCTTAATTAATAT 57.120 36.000 0.00 0.00 0.00 1.28
6346 8640 7.691993 AACTCCCCTCTCTGCTTAATTAATA 57.308 36.000 0.00 0.00 0.00 0.98
6347 8641 6.582929 AACTCCCCTCTCTGCTTAATTAAT 57.417 37.500 0.00 0.00 0.00 1.40
6350 8644 4.043435 ACAAACTCCCCTCTCTGCTTAATT 59.957 41.667 0.00 0.00 0.00 1.40
6351 8645 3.589288 ACAAACTCCCCTCTCTGCTTAAT 59.411 43.478 0.00 0.00 0.00 1.40
6352 8646 2.979678 ACAAACTCCCCTCTCTGCTTAA 59.020 45.455 0.00 0.00 0.00 1.85
6353 8647 2.621070 ACAAACTCCCCTCTCTGCTTA 58.379 47.619 0.00 0.00 0.00 3.09
6356 8650 2.038557 TGTAACAAACTCCCCTCTCTGC 59.961 50.000 0.00 0.00 0.00 4.26
6357 8651 4.065789 GTTGTAACAAACTCCCCTCTCTG 58.934 47.826 0.00 0.00 0.00 3.35
6358 8652 3.714798 TGTTGTAACAAACTCCCCTCTCT 59.285 43.478 0.00 0.00 35.67 3.10
6359 8653 4.065789 CTGTTGTAACAAACTCCCCTCTC 58.934 47.826 0.00 0.00 38.66 3.20
6360 8654 3.458487 ACTGTTGTAACAAACTCCCCTCT 59.542 43.478 0.00 0.00 38.66 3.69
6363 8657 3.314357 GTGACTGTTGTAACAAACTCCCC 59.686 47.826 0.00 0.00 38.66 4.81
6364 8658 3.314357 GGTGACTGTTGTAACAAACTCCC 59.686 47.826 0.00 0.00 38.66 4.30
6366 8660 4.196971 AGGGTGACTGTTGTAACAAACTC 58.803 43.478 0.00 0.00 38.66 3.01
6367 8661 4.230745 AGGGTGACTGTTGTAACAAACT 57.769 40.909 0.00 0.00 38.66 2.66
6368 8662 4.976224 AAGGGTGACTGTTGTAACAAAC 57.024 40.909 0.00 0.00 38.66 2.93
6370 8664 4.877251 GTGTAAGGGTGACTGTTGTAACAA 59.123 41.667 0.00 0.00 38.66 2.83
6373 8667 3.493002 CCGTGTAAGGGTGACTGTTGTAA 60.493 47.826 0.00 0.00 37.03 2.41
6374 8668 2.036217 CCGTGTAAGGGTGACTGTTGTA 59.964 50.000 0.00 0.00 37.03 2.41
6375 8669 1.202604 CCGTGTAAGGGTGACTGTTGT 60.203 52.381 0.00 0.00 37.03 3.32
6376 8670 1.508632 CCGTGTAAGGGTGACTGTTG 58.491 55.000 0.00 0.00 37.03 3.33
6377 8671 0.250166 GCCGTGTAAGGGTGACTGTT 60.250 55.000 0.00 0.00 45.59 3.16
6379 8673 0.036388 ATGCCGTGTAAGGGTGACTG 60.036 55.000 0.00 0.00 45.59 3.51
6380 8674 0.036388 CATGCCGTGTAAGGGTGACT 60.036 55.000 0.00 0.00 45.59 3.41
6381 8675 0.036765 TCATGCCGTGTAAGGGTGAC 60.037 55.000 0.00 0.00 45.59 3.67
6383 8677 1.468520 CTTTCATGCCGTGTAAGGGTG 59.531 52.381 0.00 0.00 45.59 4.61
6384 8678 1.349688 TCTTTCATGCCGTGTAAGGGT 59.650 47.619 3.81 0.00 45.59 4.34
6386 8680 4.876107 AGTAATCTTTCATGCCGTGTAAGG 59.124 41.667 3.81 0.00 36.28 2.69
6387 8681 5.580691 TGAGTAATCTTTCATGCCGTGTAAG 59.419 40.000 0.00 0.00 36.77 2.34
6388 8682 5.350365 GTGAGTAATCTTTCATGCCGTGTAA 59.650 40.000 0.00 0.00 0.00 2.41
6391 8685 3.684305 TGTGAGTAATCTTTCATGCCGTG 59.316 43.478 0.00 0.00 0.00 4.94
6392 8686 3.935203 CTGTGAGTAATCTTTCATGCCGT 59.065 43.478 0.00 0.00 0.00 5.68
6393 8687 4.183865 TCTGTGAGTAATCTTTCATGCCG 58.816 43.478 0.00 0.00 0.00 5.69
6394 8688 6.500684 TTTCTGTGAGTAATCTTTCATGCC 57.499 37.500 0.00 0.00 0.00 4.40
6401 8695 9.220767 GGTCTGTTATTTTCTGTGAGTAATCTT 57.779 33.333 0.00 0.00 0.00 2.40
6402 8696 7.824779 GGGTCTGTTATTTTCTGTGAGTAATCT 59.175 37.037 0.00 0.00 0.00 2.40
6403 8697 7.824779 AGGGTCTGTTATTTTCTGTGAGTAATC 59.175 37.037 0.00 0.00 0.00 1.75
6405 8699 7.074653 AGGGTCTGTTATTTTCTGTGAGTAA 57.925 36.000 0.00 0.00 0.00 2.24
6406 8700 6.681729 AGGGTCTGTTATTTTCTGTGAGTA 57.318 37.500 0.00 0.00 0.00 2.59
6407 8701 5.568620 AGGGTCTGTTATTTTCTGTGAGT 57.431 39.130 0.00 0.00 0.00 3.41
6409 8703 6.681729 ACTAGGGTCTGTTATTTTCTGTGA 57.318 37.500 0.00 0.00 0.00 3.58
6410 8704 7.661847 AGAAACTAGGGTCTGTTATTTTCTGTG 59.338 37.037 0.00 0.00 31.58 3.66
6411 8705 7.746703 AGAAACTAGGGTCTGTTATTTTCTGT 58.253 34.615 0.00 0.00 31.58 3.41
6412 8706 8.622948 AAGAAACTAGGGTCTGTTATTTTCTG 57.377 34.615 0.00 0.00 32.51 3.02
6414 8708 7.808381 GCAAAGAAACTAGGGTCTGTTATTTTC 59.192 37.037 0.00 0.00 0.00 2.29
6416 8710 7.004691 AGCAAAGAAACTAGGGTCTGTTATTT 58.995 34.615 0.00 0.00 0.00 1.40
6418 8712 6.128138 AGCAAAGAAACTAGGGTCTGTTAT 57.872 37.500 0.00 0.00 0.00 1.89
6422 8716 3.339141 GGAGCAAAGAAACTAGGGTCTG 58.661 50.000 0.00 0.00 0.00 3.51
6424 8718 2.347731 CGGAGCAAAGAAACTAGGGTC 58.652 52.381 0.00 0.00 0.00 4.46
6425 8719 1.003233 CCGGAGCAAAGAAACTAGGGT 59.997 52.381 0.00 0.00 0.00 4.34
6426 8720 1.739067 CCGGAGCAAAGAAACTAGGG 58.261 55.000 0.00 0.00 0.00 3.53
6427 8721 1.087501 GCCGGAGCAAAGAAACTAGG 58.912 55.000 5.05 0.00 39.53 3.02
6428 8722 0.721718 CGCCGGAGCAAAGAAACTAG 59.278 55.000 5.05 0.00 39.83 2.57
6429 8723 0.672401 CCGCCGGAGCAAAGAAACTA 60.672 55.000 5.05 0.00 39.83 2.24
6430 8724 1.966451 CCGCCGGAGCAAAGAAACT 60.966 57.895 5.05 0.00 39.83 2.66
6432 8726 2.112297 ACCGCCGGAGCAAAGAAA 59.888 55.556 11.71 0.00 39.83 2.52
6435 8729 3.423154 GTCACCGCCGGAGCAAAG 61.423 66.667 11.71 0.00 39.83 2.77
6441 8735 4.323477 CTTTGGGTCACCGCCGGA 62.323 66.667 11.71 0.00 40.75 5.14
6442 8736 3.622060 ATCTTTGGGTCACCGCCGG 62.622 63.158 0.00 0.00 40.75 6.13
6443 8737 1.241315 AAATCTTTGGGTCACCGCCG 61.241 55.000 0.00 0.00 40.75 6.46
6444 8738 0.243636 CAAATCTTTGGGTCACCGCC 59.756 55.000 0.00 0.00 40.75 6.13
6445 8739 0.388520 GCAAATCTTTGGGTCACCGC 60.389 55.000 4.93 0.00 40.75 5.68
6446 8740 0.243636 GGCAAATCTTTGGGTCACCG 59.756 55.000 4.93 0.00 40.75 4.94
6447 8741 1.546029 GAGGCAAATCTTTGGGTCACC 59.454 52.381 4.93 0.00 38.57 4.02
6448 8742 1.200020 CGAGGCAAATCTTTGGGTCAC 59.800 52.381 4.93 0.00 38.57 3.67
6449 8743 1.202879 ACGAGGCAAATCTTTGGGTCA 60.203 47.619 4.93 0.00 38.57 4.02
6450 8744 1.534729 ACGAGGCAAATCTTTGGGTC 58.465 50.000 4.93 0.00 38.57 4.46
6451 8745 1.995376 AACGAGGCAAATCTTTGGGT 58.005 45.000 4.93 0.00 38.57 4.51
6452 8746 3.081804 ACTAACGAGGCAAATCTTTGGG 58.918 45.455 4.93 0.00 38.57 4.12
6453 8747 3.751175 TCACTAACGAGGCAAATCTTTGG 59.249 43.478 4.93 0.00 38.57 3.28
6454 8748 5.122239 TGATCACTAACGAGGCAAATCTTTG 59.878 40.000 0.00 0.00 41.03 2.77
6456 8750 4.832248 TGATCACTAACGAGGCAAATCTT 58.168 39.130 0.00 0.00 0.00 2.40
6459 8753 5.755375 CACTATGATCACTAACGAGGCAAAT 59.245 40.000 0.00 0.00 0.00 2.32
6460 8754 5.105513 TCACTATGATCACTAACGAGGCAAA 60.106 40.000 0.00 0.00 0.00 3.68
6462 8756 3.951680 TCACTATGATCACTAACGAGGCA 59.048 43.478 0.00 0.00 0.00 4.75
6463 8757 4.541779 CTCACTATGATCACTAACGAGGC 58.458 47.826 0.00 0.00 0.00 4.70
6465 8759 5.175090 TGCTCACTATGATCACTAACGAG 57.825 43.478 0.00 2.12 0.00 4.18
6466 8760 5.576447 TTGCTCACTATGATCACTAACGA 57.424 39.130 0.00 0.00 0.00 3.85
6467 8761 6.647212 TTTTGCTCACTATGATCACTAACG 57.353 37.500 0.00 0.00 0.00 3.18
6468 8762 7.912250 CCATTTTTGCTCACTATGATCACTAAC 59.088 37.037 0.00 0.00 0.00 2.34
6469 8763 7.415541 GCCATTTTTGCTCACTATGATCACTAA 60.416 37.037 0.00 0.00 0.00 2.24
6471 8765 5.163581 GCCATTTTTGCTCACTATGATCACT 60.164 40.000 0.00 0.00 0.00 3.41
6472 8766 5.039333 GCCATTTTTGCTCACTATGATCAC 58.961 41.667 0.00 0.00 0.00 3.06
6473 8767 4.201940 CGCCATTTTTGCTCACTATGATCA 60.202 41.667 0.00 0.00 0.00 2.92
6474 8768 4.285292 CGCCATTTTTGCTCACTATGATC 58.715 43.478 0.00 0.00 0.00 2.92
6475 8769 3.067180 CCGCCATTTTTGCTCACTATGAT 59.933 43.478 0.00 0.00 0.00 2.45
6476 8770 2.423185 CCGCCATTTTTGCTCACTATGA 59.577 45.455 0.00 0.00 0.00 2.15
6477 8771 2.164219 ACCGCCATTTTTGCTCACTATG 59.836 45.455 0.00 0.00 0.00 2.23
6478 8772 2.164219 CACCGCCATTTTTGCTCACTAT 59.836 45.455 0.00 0.00 0.00 2.12
6480 8774 0.314935 CACCGCCATTTTTGCTCACT 59.685 50.000 0.00 0.00 0.00 3.41
6481 8775 0.667184 CCACCGCCATTTTTGCTCAC 60.667 55.000 0.00 0.00 0.00 3.51
6482 8776 1.664873 CCACCGCCATTTTTGCTCA 59.335 52.632 0.00 0.00 0.00 4.26
6483 8777 1.079888 CCCACCGCCATTTTTGCTC 60.080 57.895 0.00 0.00 0.00 4.26
6484 8778 2.582493 CCCCACCGCCATTTTTGCT 61.582 57.895 0.00 0.00 0.00 3.91
6486 8780 2.047370 GCCCCACCGCCATTTTTG 60.047 61.111 0.00 0.00 0.00 2.44
6487 8781 3.690280 CGCCCCACCGCCATTTTT 61.690 61.111 0.00 0.00 0.00 1.94
6496 8790 1.523938 GTCATAAGAGCGCCCCACC 60.524 63.158 2.29 0.00 0.00 4.61
6500 8794 0.876342 CTTCCGTCATAAGAGCGCCC 60.876 60.000 2.29 0.00 0.00 6.13
6501 8795 0.102481 TCTTCCGTCATAAGAGCGCC 59.898 55.000 2.29 0.00 0.00 6.53
6502 8796 1.201343 GTCTTCCGTCATAAGAGCGC 58.799 55.000 0.00 0.00 33.75 5.92
6515 8809 0.323451 AAGAAATGCCCGGGTCTTCC 60.323 55.000 24.63 9.29 0.00 3.46
6516 8810 1.545841 AAAGAAATGCCCGGGTCTTC 58.454 50.000 24.63 20.79 30.10 2.87
6517 8811 2.009681 AAAAGAAATGCCCGGGTCTT 57.990 45.000 24.63 19.88 31.69 3.01
6520 8814 2.764010 GGAATAAAAGAAATGCCCGGGT 59.236 45.455 24.63 0.09 0.00 5.28
6521 8815 2.763448 TGGAATAAAAGAAATGCCCGGG 59.237 45.455 19.09 19.09 0.00 5.73
6522 8816 4.670896 ATGGAATAAAAGAAATGCCCGG 57.329 40.909 0.00 0.00 0.00 5.73
6523 8817 6.158598 CCATATGGAATAAAAGAAATGCCCG 58.841 40.000 17.49 0.00 37.39 6.13
6524 8818 7.066307 ACCATATGGAATAAAAGAAATGCCC 57.934 36.000 28.77 0.00 38.94 5.36
6525 8819 7.154656 GGACCATATGGAATAAAAGAAATGCC 58.845 38.462 28.77 5.08 38.94 4.40
6526 8820 7.725251 TGGACCATATGGAATAAAAGAAATGC 58.275 34.615 28.77 6.93 38.94 3.56
6527 8821 9.701098 CATGGACCATATGGAATAAAAGAAATG 57.299 33.333 28.77 11.66 38.94 2.32
6528 8822 9.659135 TCATGGACCATATGGAATAAAAGAAAT 57.341 29.630 28.77 0.28 38.94 2.17
6529 8823 8.912988 GTCATGGACCATATGGAATAAAAGAAA 58.087 33.333 28.77 1.07 38.94 2.52
6530 8824 8.058235 TGTCATGGACCATATGGAATAAAAGAA 58.942 33.333 28.77 3.98 38.94 2.52
6531 8825 7.502226 GTGTCATGGACCATATGGAATAAAAGA 59.498 37.037 28.77 13.07 38.94 2.52
6532 8826 7.255590 GGTGTCATGGACCATATGGAATAAAAG 60.256 40.741 28.77 11.09 38.94 2.27
6533 8827 6.549364 GGTGTCATGGACCATATGGAATAAAA 59.451 38.462 28.77 7.65 38.94 1.52
6535 8829 5.133491 TGGTGTCATGGACCATATGGAATAA 59.867 40.000 28.77 10.77 38.63 1.40
6536 8830 4.662650 TGGTGTCATGGACCATATGGAATA 59.337 41.667 28.77 13.14 38.63 1.75
6537 8831 3.462954 TGGTGTCATGGACCATATGGAAT 59.537 43.478 28.77 14.89 38.63 3.01
6539 8833 2.439135 CTGGTGTCATGGACCATATGGA 59.561 50.000 28.77 6.40 42.69 3.41
6540 8834 2.854963 CTGGTGTCATGGACCATATGG 58.145 52.381 20.68 20.68 42.69 2.74
6541 8835 2.224606 GCTGGTGTCATGGACCATATG 58.775 52.381 15.45 0.00 42.69 1.78
6542 8836 1.845791 TGCTGGTGTCATGGACCATAT 59.154 47.619 15.45 0.00 42.69 1.78
6543 8837 1.284313 TGCTGGTGTCATGGACCATA 58.716 50.000 15.45 7.54 42.69 2.74
6544 8838 0.627451 ATGCTGGTGTCATGGACCAT 59.373 50.000 15.45 0.00 42.69 3.55
6545 8839 0.322726 CATGCTGGTGTCATGGACCA 60.323 55.000 14.60 14.60 41.37 4.02
6558 8852 3.200593 GCCTCGCTGACCATGCTG 61.201 66.667 0.00 0.00 0.00 4.41
6560 8854 4.783621 TGGCCTCGCTGACCATGC 62.784 66.667 3.32 0.00 0.00 4.06
6561 8855 1.890979 GATGGCCTCGCTGACCATG 60.891 63.158 3.32 0.00 44.20 3.66
6562 8856 2.507944 GATGGCCTCGCTGACCAT 59.492 61.111 3.32 0.00 46.82 3.55
6563 8857 4.147449 CGATGGCCTCGCTGACCA 62.147 66.667 3.32 0.00 41.14 4.02
6571 8865 1.135575 CAACAGAAAAGCGATGGCCTC 60.136 52.381 3.32 0.00 41.24 4.70
6573 8867 0.109132 CCAACAGAAAAGCGATGGCC 60.109 55.000 0.00 0.00 41.24 5.36
6574 8868 0.109132 CCCAACAGAAAAGCGATGGC 60.109 55.000 0.00 0.00 40.37 4.40
6575 8869 0.527565 CCCCAACAGAAAAGCGATGG 59.472 55.000 0.00 0.00 0.00 3.51
6576 8870 1.200020 GTCCCCAACAGAAAAGCGATG 59.800 52.381 0.00 0.00 0.00 3.84
6577 8871 1.073923 AGTCCCCAACAGAAAAGCGAT 59.926 47.619 0.00 0.00 0.00 4.58
6578 8872 0.472471 AGTCCCCAACAGAAAAGCGA 59.528 50.000 0.00 0.00 0.00 4.93
6580 8874 1.202940 AGGAGTCCCCAACAGAAAAGC 60.203 52.381 5.25 0.00 37.41 3.51
6581 8875 2.508526 CAGGAGTCCCCAACAGAAAAG 58.491 52.381 5.25 0.00 37.41 2.27
6582 8876 1.478654 GCAGGAGTCCCCAACAGAAAA 60.479 52.381 5.25 0.00 37.41 2.29
6584 8878 1.761174 GCAGGAGTCCCCAACAGAA 59.239 57.895 5.25 0.00 37.41 3.02
6585 8879 2.583441 CGCAGGAGTCCCCAACAGA 61.583 63.158 5.25 0.00 37.41 3.41
6586 8880 2.046892 CGCAGGAGTCCCCAACAG 60.047 66.667 5.25 0.00 37.41 3.16
6587 8881 4.329545 GCGCAGGAGTCCCCAACA 62.330 66.667 5.25 0.00 37.41 3.33
6596 8890 4.514577 ATCGAACCGGCGCAGGAG 62.515 66.667 33.66 21.71 34.73 3.69
6598 8892 3.124921 AAATCGAACCGGCGCAGG 61.125 61.111 25.72 25.72 37.30 4.85
6599 8893 2.098298 CAAATCGAACCGGCGCAG 59.902 61.111 10.83 4.65 0.00 5.18
6600 8894 2.666862 ACAAATCGAACCGGCGCA 60.667 55.556 10.83 0.00 0.00 6.09
6601 8895 2.097728 GACAAATCGAACCGGCGC 59.902 61.111 0.00 0.00 0.00 6.53
6602 8896 2.030401 TGGACAAATCGAACCGGCG 61.030 57.895 0.00 0.00 0.00 6.46
6603 8897 1.500396 GTGGACAAATCGAACCGGC 59.500 57.895 0.00 0.00 0.00 6.13
6604 8898 0.604243 TGGTGGACAAATCGAACCGG 60.604 55.000 0.00 0.00 35.80 5.28
6605 8899 1.231221 TTGGTGGACAAATCGAACCG 58.769 50.000 0.00 0.00 35.80 4.44
6606 8900 3.506067 AGAATTGGTGGACAAATCGAACC 59.494 43.478 0.00 0.00 42.53 3.62
6608 8902 5.119931 CAAGAATTGGTGGACAAATCGAA 57.880 39.130 0.00 0.00 43.94 3.71
6609 8903 4.764679 CAAGAATTGGTGGACAAATCGA 57.235 40.909 0.00 0.00 43.94 3.59
6633 8927 1.838112 TGTGGCATCTGGATGTTTCC 58.162 50.000 11.52 5.82 42.94 3.13
6634 8928 2.165030 CCTTGTGGCATCTGGATGTTTC 59.835 50.000 11.52 3.97 40.80 2.78
6635 8929 2.173519 CCTTGTGGCATCTGGATGTTT 58.826 47.619 11.52 0.00 40.80 2.83
6636 8930 1.355381 TCCTTGTGGCATCTGGATGTT 59.645 47.619 11.52 0.00 40.80 2.71
6638 8932 1.676746 CTCCTTGTGGCATCTGGATG 58.323 55.000 6.24 6.24 41.60 3.51
6639 8933 0.549950 CCTCCTTGTGGCATCTGGAT 59.450 55.000 0.00 0.00 0.00 3.41
6640 8934 0.842030 ACCTCCTTGTGGCATCTGGA 60.842 55.000 0.00 0.00 0.00 3.86
6641 8935 0.679002 CACCTCCTTGTGGCATCTGG 60.679 60.000 0.00 0.00 32.50 3.86
6642 8936 0.037303 ACACCTCCTTGTGGCATCTG 59.963 55.000 0.00 0.00 40.62 2.90
6643 8937 0.326264 GACACCTCCTTGTGGCATCT 59.674 55.000 0.00 0.00 44.03 2.90
6644 8938 0.678048 GGACACCTCCTTGTGGCATC 60.678 60.000 0.00 0.00 46.53 3.91
6646 8940 1.426251 ATGGACACCTCCTTGTGGCA 61.426 55.000 0.00 0.00 46.53 4.92
6647 8941 0.251341 AATGGACACCTCCTTGTGGC 60.251 55.000 0.00 0.00 43.87 5.01
6648 8942 1.888512 CAAATGGACACCTCCTTGTGG 59.111 52.381 0.00 0.00 40.62 4.17
6650 8944 3.117512 AGAACAAATGGACACCTCCTTGT 60.118 43.478 0.00 0.00 36.81 3.16
6653 8947 4.020128 GTCTAGAACAAATGGACACCTCCT 60.020 45.833 0.00 0.00 37.48 3.69
6656 8950 3.306780 CCGTCTAGAACAAATGGACACCT 60.307 47.826 0.00 0.00 0.00 4.00
6657 8951 3.000727 CCGTCTAGAACAAATGGACACC 58.999 50.000 0.00 0.00 0.00 4.16
6658 8952 3.921677 TCCGTCTAGAACAAATGGACAC 58.078 45.455 0.00 0.00 0.00 3.67
6659 8953 4.610605 TTCCGTCTAGAACAAATGGACA 57.389 40.909 0.00 0.00 0.00 4.02
6660 8954 6.371825 AGAAATTCCGTCTAGAACAAATGGAC 59.628 38.462 0.00 0.00 0.00 4.02
6663 8957 7.118390 ACTGAGAAATTCCGTCTAGAACAAATG 59.882 37.037 0.00 0.00 0.00 2.32
6665 8959 6.423905 CACTGAGAAATTCCGTCTAGAACAAA 59.576 38.462 0.00 0.00 0.00 2.83
6666 8960 5.926542 CACTGAGAAATTCCGTCTAGAACAA 59.073 40.000 0.00 0.00 0.00 2.83
6672 8966 3.830178 TGGTCACTGAGAAATTCCGTCTA 59.170 43.478 0.00 0.00 0.00 2.59
6674 8968 3.040147 TGGTCACTGAGAAATTCCGTC 57.960 47.619 0.00 0.00 0.00 4.79
6675 8969 3.261897 AGATGGTCACTGAGAAATTCCGT 59.738 43.478 0.00 0.00 0.00 4.69
6676 8970 3.866651 AGATGGTCACTGAGAAATTCCG 58.133 45.455 0.00 0.00 0.00 4.30
6677 8971 4.637977 GGAAGATGGTCACTGAGAAATTCC 59.362 45.833 0.00 0.00 0.00 3.01
6678 8972 5.248640 TGGAAGATGGTCACTGAGAAATTC 58.751 41.667 0.00 0.00 0.00 2.17
6679 8973 5.246981 TGGAAGATGGTCACTGAGAAATT 57.753 39.130 0.00 0.00 0.00 1.82
6680 8974 4.916041 TGGAAGATGGTCACTGAGAAAT 57.084 40.909 0.00 0.00 0.00 2.17
6681 8975 4.705110 TTGGAAGATGGTCACTGAGAAA 57.295 40.909 0.00 0.00 0.00 2.52
6682 8976 4.645535 CTTTGGAAGATGGTCACTGAGAA 58.354 43.478 0.00 0.00 0.00 2.87
6683 8977 3.557898 GCTTTGGAAGATGGTCACTGAGA 60.558 47.826 0.00 0.00 0.00 3.27
6684 8978 2.746362 GCTTTGGAAGATGGTCACTGAG 59.254 50.000 0.00 0.00 0.00 3.35
6685 8979 2.553028 GGCTTTGGAAGATGGTCACTGA 60.553 50.000 0.00 0.00 0.00 3.41
6686 8980 1.815003 GGCTTTGGAAGATGGTCACTG 59.185 52.381 0.00 0.00 0.00 3.66
6688 8982 0.804989 CGGCTTTGGAAGATGGTCAC 59.195 55.000 0.00 0.00 0.00 3.67
6689 8983 0.400213 ACGGCTTTGGAAGATGGTCA 59.600 50.000 0.00 0.00 0.00 4.02
6690 8984 2.396590 TACGGCTTTGGAAGATGGTC 57.603 50.000 0.00 0.00 0.00 4.02
6692 8986 1.949525 CCATACGGCTTTGGAAGATGG 59.050 52.381 0.00 0.00 34.81 3.51
6694 8988 3.644966 TTCCATACGGCTTTGGAAGAT 57.355 42.857 8.13 0.00 44.92 2.40
6698 8992 3.199677 CGTTATTCCATACGGCTTTGGA 58.800 45.455 0.00 0.00 40.24 3.53
6699 8993 3.602390 CGTTATTCCATACGGCTTTGG 57.398 47.619 0.00 0.00 34.30 3.28
6706 9000 3.191669 TCAAGTGCCGTTATTCCATACG 58.808 45.455 0.00 0.00 37.50 3.06
6707 9001 4.873827 TCTTCAAGTGCCGTTATTCCATAC 59.126 41.667 0.00 0.00 0.00 2.39
6708 9002 5.092554 TCTTCAAGTGCCGTTATTCCATA 57.907 39.130 0.00 0.00 0.00 2.74
6709 9003 3.950397 TCTTCAAGTGCCGTTATTCCAT 58.050 40.909 0.00 0.00 0.00 3.41
6710 9004 3.410631 TCTTCAAGTGCCGTTATTCCA 57.589 42.857 0.00 0.00 0.00 3.53
6711 9005 4.759516 TTTCTTCAAGTGCCGTTATTCC 57.240 40.909 0.00 0.00 0.00 3.01
6712 9006 5.516090 TGTTTTCTTCAAGTGCCGTTATTC 58.484 37.500 0.00 0.00 0.00 1.75
6714 9008 5.009610 ACATGTTTTCTTCAAGTGCCGTTAT 59.990 36.000 0.00 0.00 0.00 1.89
6715 9009 4.336993 ACATGTTTTCTTCAAGTGCCGTTA 59.663 37.500 0.00 0.00 0.00 3.18
6716 9010 3.130340 ACATGTTTTCTTCAAGTGCCGTT 59.870 39.130 0.00 0.00 0.00 4.44
6717 9011 2.687935 ACATGTTTTCTTCAAGTGCCGT 59.312 40.909 0.00 0.00 0.00 5.68
6719 9013 3.383761 CCACATGTTTTCTTCAAGTGCC 58.616 45.455 0.00 0.00 34.54 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.