Multiple sequence alignment - TraesCS6D01G379300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G379300 chr6D 100.000 5502 0 0 1 5502 461005929 461011430 0.000000e+00 10161.0
1 TraesCS6D01G379300 chr6B 92.105 1558 89 19 881 2422 702562039 702563578 0.000000e+00 2165.0
2 TraesCS6D01G379300 chr6B 90.838 1659 89 29 3547 5148 702564552 702566204 0.000000e+00 2163.0
3 TraesCS6D01G379300 chr6B 89.579 451 37 7 350 798 702561523 702561965 1.030000e-156 564.0
4 TraesCS6D01G379300 chr6B 92.481 266 18 2 1 265 702560823 702561087 4.020000e-101 379.0
5 TraesCS6D01G379300 chr6B 90.625 96 7 2 2433 2526 83203160 83203255 5.790000e-25 126.0
6 TraesCS6D01G379300 chr6B 91.803 61 3 1 785 843 702561980 702562040 3.530000e-12 84.2
7 TraesCS6D01G379300 chr6A 93.492 1306 77 7 806 2108 607678771 607680071 0.000000e+00 1934.0
8 TraesCS6D01G379300 chr6A 93.628 1177 60 7 3558 4722 607681475 607682648 0.000000e+00 1744.0
9 TraesCS6D01G379300 chr6A 97.382 764 19 1 4740 5502 607682703 607683466 0.000000e+00 1299.0
10 TraesCS6D01G379300 chr6A 89.416 822 68 10 6 819 607677945 607678755 0.000000e+00 1018.0
11 TraesCS6D01G379300 chr6A 85.627 327 31 9 2107 2423 607680170 607680490 4.110000e-86 329.0
12 TraesCS6D01G379300 chr3B 90.000 110 8 3 2415 2522 775576426 775576318 7.430000e-29 139.0
13 TraesCS6D01G379300 chr7B 93.182 88 6 0 2438 2525 740996156 740996243 4.470000e-26 130.0
14 TraesCS6D01G379300 chr5B 93.182 88 6 0 2437 2524 184285264 184285351 4.470000e-26 130.0
15 TraesCS6D01G379300 chr5B 87.619 105 11 2 2426 2529 269975144 269975247 2.690000e-23 121.0
16 TraesCS6D01G379300 chr3D 92.308 91 7 0 2436 2526 19306561 19306651 4.470000e-26 130.0
17 TraesCS6D01G379300 chr3D 94.118 85 5 0 2435 2519 434025793 434025877 4.470000e-26 130.0
18 TraesCS6D01G379300 chr4A 89.691 97 10 0 2426 2522 9380771 9380675 2.080000e-24 124.0
19 TraesCS6D01G379300 chr4A 90.526 95 8 1 2438 2532 636312428 636312521 2.080000e-24 124.0
20 TraesCS6D01G379300 chr2B 94.737 57 3 0 724 780 186783067 186783123 7.590000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G379300 chr6D 461005929 461011430 5501 False 10161.00 10161 100.0000 1 5502 1 chr6D.!!$F1 5501
1 TraesCS6D01G379300 chr6B 702560823 702566204 5381 False 1071.04 2165 91.3612 1 5148 5 chr6B.!!$F2 5147
2 TraesCS6D01G379300 chr6A 607677945 607683466 5521 False 1264.80 1934 91.9090 6 5502 5 chr6A.!!$F1 5496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 708 0.454600 TCGCGAGTAGTTTAGCCAGG 59.545 55.0 3.71 0.0 0.00 4.45 F
2093 2575 0.687354 AGTCAGCAATCACTTCCCGT 59.313 50.0 0.00 0.0 0.00 5.28 F
2877 3490 0.375454 CTACTGCTCGACCGTGAGAG 59.625 60.0 1.22 0.0 38.28 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2192 2777 1.001181 TGGCCTTCATGAGCAAAAAGC 59.999 47.619 3.32 0.42 46.19 3.51 R
2899 3512 0.108898 CTCCAGGAGCAGTTCACGAG 60.109 60.000 2.60 0.00 0.00 4.18 R
4592 5292 0.478072 TCTGCCTGGGTGACAACAAT 59.522 50.000 0.00 0.00 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
293 708 0.454600 TCGCGAGTAGTTTAGCCAGG 59.545 55.000 3.71 0.00 0.00 4.45
320 735 1.474077 GGAAGGCTATGCACCAAACTG 59.526 52.381 0.00 0.00 0.00 3.16
346 761 6.011122 AGGCCAGAAATCTGAAATATCTGT 57.989 37.500 11.94 0.00 46.59 3.41
381 796 6.721571 TTTTCTTCAATAGCACTAGGAACG 57.278 37.500 0.00 0.00 0.00 3.95
418 833 1.067295 ATCAAGCTCCCAACCAGACA 58.933 50.000 0.00 0.00 0.00 3.41
419 834 0.843309 TCAAGCTCCCAACCAGACAA 59.157 50.000 0.00 0.00 0.00 3.18
424 839 1.269051 GCTCCCAACCAGACAAAAACG 60.269 52.381 0.00 0.00 0.00 3.60
445 860 0.839277 TGGTTGATGGCATCGAGGAT 59.161 50.000 21.65 0.00 0.00 3.24
468 883 1.069227 CACCTTTGACCGTTTGCTAGC 60.069 52.381 8.10 8.10 0.00 3.42
483 898 4.679373 TGCTAGCAAAAATTGGTTGGAA 57.321 36.364 16.84 0.00 42.20 3.53
505 920 9.739276 TGGAACTAAGATGATTTGACTATTTGT 57.261 29.630 0.00 0.00 0.00 2.83
529 947 3.838244 TCAAATCCCTAGGACAATCCG 57.162 47.619 11.48 0.00 42.75 4.18
548 966 2.542618 CCGTGTGTGCTGCAACAAATAA 60.543 45.455 2.77 0.00 0.00 1.40
556 974 6.589523 GTGTGCTGCAACAAATAATCCATTAA 59.410 34.615 2.77 0.00 0.00 1.40
557 975 7.117523 GTGTGCTGCAACAAATAATCCATTAAA 59.882 33.333 2.77 0.00 0.00 1.52
716 1139 8.954350 AGAGAAGTAAATGAAGGTGATTGAATG 58.046 33.333 0.00 0.00 0.00 2.67
719 1142 8.408043 AAGTAAATGAAGGTGATTGAATGTCA 57.592 30.769 0.00 0.00 0.00 3.58
720 1143 8.585471 AGTAAATGAAGGTGATTGAATGTCAT 57.415 30.769 0.00 0.00 0.00 3.06
722 1145 9.643693 GTAAATGAAGGTGATTGAATGTCATTT 57.356 29.630 11.96 11.96 43.19 2.32
760 1183 6.215431 TGATTATCATACGGGGAAGATTGGAT 59.785 38.462 0.00 0.00 0.00 3.41
863 1343 3.664551 AGGACCTACATTAAAAGGCCC 57.335 47.619 0.00 1.57 35.73 5.80
864 1344 2.923629 AGGACCTACATTAAAAGGCCCA 59.076 45.455 0.00 0.00 37.85 5.36
867 1347 4.080186 GGACCTACATTAAAAGGCCCACTA 60.080 45.833 0.00 0.00 35.58 2.74
870 1350 5.949952 ACCTACATTAAAAGGCCCACTAAAG 59.050 40.000 0.00 0.00 36.24 1.85
877 1357 5.530176 AAAAGGCCCACTAAAGGAGATTA 57.470 39.130 0.00 0.00 0.00 1.75
899 1379 2.017049 GCAGCCCAGTAGTGTTTATGG 58.983 52.381 0.00 0.00 0.00 2.74
969 1449 4.516195 GGCCCGAGACCGAGAAGC 62.516 72.222 0.00 0.00 38.22 3.86
1086 1566 1.437573 CGTCTCCTTGATGGCGCTA 59.562 57.895 7.64 0.00 35.26 4.26
1302 1782 1.608590 CCAGATCTCTCTCGCCTTCTC 59.391 57.143 0.00 0.00 0.00 2.87
1306 1786 3.137544 AGATCTCTCTCGCCTTCTCCTTA 59.862 47.826 0.00 0.00 0.00 2.69
1477 1957 5.840243 TGAGCTAAATGTGAATCCATTGG 57.160 39.130 0.00 0.00 35.30 3.16
1530 2010 2.564947 AGAGCTGCTAGTAGTTGTTGCT 59.435 45.455 9.73 0.00 0.00 3.91
1534 2014 3.994392 GCTGCTAGTAGTTGTTGCTACAA 59.006 43.478 9.74 9.74 42.68 2.41
1535 2015 4.451096 GCTGCTAGTAGTTGTTGCTACAAA 59.549 41.667 15.28 0.00 45.33 2.83
1538 2018 7.148474 GCTGCTAGTAGTTGTTGCTACAAATAA 60.148 37.037 19.72 7.51 43.81 1.40
1539 2019 8.610248 TGCTAGTAGTTGTTGCTACAAATAAA 57.390 30.769 19.72 11.80 43.81 1.40
1540 2020 8.717821 TGCTAGTAGTTGTTGCTACAAATAAAG 58.282 33.333 19.72 19.12 43.81 1.85
1551 2032 7.141100 TGCTACAAATAAAGTTTAGGAGCAC 57.859 36.000 13.57 0.00 31.64 4.40
1552 2033 6.712998 TGCTACAAATAAAGTTTAGGAGCACA 59.287 34.615 13.57 0.41 31.64 4.57
1553 2034 7.021790 GCTACAAATAAAGTTTAGGAGCACAC 58.978 38.462 11.04 0.00 0.00 3.82
1556 2037 7.951591 ACAAATAAAGTTTAGGAGCACACAAT 58.048 30.769 1.21 0.00 0.00 2.71
1557 2038 9.073475 ACAAATAAAGTTTAGGAGCACACAATA 57.927 29.630 1.21 0.00 0.00 1.90
1558 2039 9.906660 CAAATAAAGTTTAGGAGCACACAATAA 57.093 29.630 1.21 0.00 0.00 1.40
1559 2040 9.908152 AAATAAAGTTTAGGAGCACACAATAAC 57.092 29.630 1.21 0.00 0.00 1.89
1589 2070 2.437651 GGAGAGCTCCCTGATAAAGCTT 59.562 50.000 10.93 0.00 46.01 3.74
1590 2071 3.118075 GGAGAGCTCCCTGATAAAGCTTT 60.118 47.826 17.30 17.30 46.01 3.51
1985 2466 9.334947 CAGGTGATATTTGTATGTGATCTTCTT 57.665 33.333 0.00 0.00 0.00 2.52
2070 2552 8.081633 CCATTGTTTTGAATTACAAGCTCACTA 58.918 33.333 0.00 0.00 39.77 2.74
2091 2573 6.870965 CACTATATAGTCAGCAATCACTTCCC 59.129 42.308 12.62 0.00 33.46 3.97
2093 2575 0.687354 AGTCAGCAATCACTTCCCGT 59.313 50.000 0.00 0.00 0.00 5.28
2112 2695 9.257651 CTTCCCGTTACCTTCAATATTAGTTAG 57.742 37.037 0.00 0.00 0.00 2.34
2117 2700 9.256477 CGTTACCTTCAATATTAGTTAGCATGA 57.744 33.333 0.00 0.00 0.00 3.07
2213 2806 2.929592 GCTTTTTGCTCATGAAGGCCAG 60.930 50.000 5.01 0.00 38.95 4.85
2224 2817 2.795329 TGAAGGCCAGAGAACATTTCC 58.205 47.619 5.01 0.00 0.00 3.13
2247 2840 6.097696 TCCGTCCAGTTGTATCTTTATGATGA 59.902 38.462 0.00 0.00 36.65 2.92
2248 2841 6.931281 CCGTCCAGTTGTATCTTTATGATGAT 59.069 38.462 0.00 0.00 36.65 2.45
2267 2860 8.084985 TGATGATATACACTAGTCAAACCCAA 57.915 34.615 0.00 0.00 0.00 4.12
2290 2883 5.347978 AGGGTTGATTAGGGTACTAACAGT 58.652 41.667 0.00 0.00 41.68 3.55
2291 2884 5.424573 AGGGTTGATTAGGGTACTAACAGTC 59.575 44.000 0.00 0.00 41.68 3.51
2293 2886 6.126854 GGGTTGATTAGGGTACTAACAGTCAT 60.127 42.308 0.00 0.00 41.68 3.06
2335 2928 1.273606 GTGCTGGAAGTCTAGTCTGCA 59.726 52.381 0.00 0.00 35.30 4.41
2336 2929 1.273606 TGCTGGAAGTCTAGTCTGCAC 59.726 52.381 0.00 0.00 35.30 4.57
2337 2930 1.404851 GCTGGAAGTCTAGTCTGCACC 60.405 57.143 0.00 0.49 35.30 5.01
2401 2994 3.358111 TCTGAAAAATGCCCATACGGA 57.642 42.857 0.00 0.00 0.00 4.69
2411 3004 2.168936 TGCCCATACGGAGATACGTTTT 59.831 45.455 0.00 0.00 46.25 2.43
2412 3005 2.542595 GCCCATACGGAGATACGTTTTG 59.457 50.000 0.00 0.00 46.25 2.44
2413 3006 3.738899 GCCCATACGGAGATACGTTTTGA 60.739 47.826 0.00 0.00 46.25 2.69
2415 3008 4.441079 CCCATACGGAGATACGTTTTGACT 60.441 45.833 0.00 0.00 46.25 3.41
2464 3057 9.825109 ACTCCTTCTGTAAAGAAATATAAGAGC 57.175 33.333 0.00 0.00 0.00 4.09
2465 3058 9.823647 CTCCTTCTGTAAAGAAATATAAGAGCA 57.176 33.333 0.00 0.00 0.00 4.26
2499 3092 8.854614 ACTAAAGTAGTGATTTGAATGCTCTT 57.145 30.769 0.00 0.00 37.69 2.85
2500 3093 9.944376 ACTAAAGTAGTGATTTGAATGCTCTTA 57.056 29.630 0.00 0.00 37.69 2.10
2517 3110 9.566432 AATGCTCTTATATTTCTTTACAGAGGG 57.434 33.333 0.00 0.00 0.00 4.30
2518 3111 8.319057 TGCTCTTATATTTCTTTACAGAGGGA 57.681 34.615 0.00 0.00 0.00 4.20
2519 3112 8.768397 TGCTCTTATATTTCTTTACAGAGGGAA 58.232 33.333 0.00 0.00 0.00 3.97
2520 3113 9.785982 GCTCTTATATTTCTTTACAGAGGGAAT 57.214 33.333 0.00 0.00 0.00 3.01
2532 3125 8.842358 TTTACAGAGGGAATAGTTGTTTACTG 57.158 34.615 0.00 0.00 37.73 2.74
2557 3150 5.105997 GGAACAGCAGATTAGCTTGATGTTT 60.106 40.000 17.96 5.42 43.70 2.83
2564 3157 6.618811 CAGATTAGCTTGATGTTTTGCTCTT 58.381 36.000 0.00 0.00 37.02 2.85
2575 3172 6.658816 TGATGTTTTGCTCTTTTCCTATAGCA 59.341 34.615 0.00 0.00 42.91 3.49
2606 3203 9.012161 TGCATATTACATAGAAATAGCATGCAA 57.988 29.630 21.98 0.32 33.06 4.08
2626 3223 6.222389 TGCAAAATAACACCAAAATGGAGAG 58.778 36.000 2.85 0.00 40.96 3.20
2632 3229 2.365293 ACACCAAAATGGAGAGGTTTGC 59.635 45.455 2.85 0.00 40.96 3.68
2658 3255 0.835941 CAGGTAGGAGAGCTGCCATT 59.164 55.000 0.00 0.00 46.16 3.16
2659 3256 2.042464 CAGGTAGGAGAGCTGCCATTA 58.958 52.381 0.00 0.00 46.16 1.90
2660 3257 2.036992 CAGGTAGGAGAGCTGCCATTAG 59.963 54.545 0.00 0.00 46.16 1.73
2661 3258 2.091055 AGGTAGGAGAGCTGCCATTAGA 60.091 50.000 0.00 0.00 33.53 2.10
2662 3259 2.903135 GGTAGGAGAGCTGCCATTAGAT 59.097 50.000 0.00 0.00 0.00 1.98
2663 3260 4.090090 GGTAGGAGAGCTGCCATTAGATA 58.910 47.826 0.00 0.00 0.00 1.98
2665 3262 3.172339 AGGAGAGCTGCCATTAGATAGG 58.828 50.000 0.00 0.00 0.00 2.57
2666 3263 3.169099 GGAGAGCTGCCATTAGATAGGA 58.831 50.000 0.00 0.00 0.00 2.94
2697 3294 0.556380 AGAGGGGAGGGAAGAGGAGA 60.556 60.000 0.00 0.00 0.00 3.71
2701 3298 1.595058 GGGAGGGAAGAGGAGAGGGA 61.595 65.000 0.00 0.00 0.00 4.20
2707 3304 0.616111 GAAGAGGAGAGGGAGCACCA 60.616 60.000 1.58 0.00 43.89 4.17
2711 3308 2.730524 GGAGAGGGAGCACCAGAGC 61.731 68.421 1.58 0.00 43.89 4.09
2742 3355 3.005539 AGCCGAGCAGTCCACCAT 61.006 61.111 0.00 0.00 0.00 3.55
2769 3382 2.184579 GCCGGTGACCTACTGCTC 59.815 66.667 1.90 0.00 34.15 4.26
2779 3392 0.394488 CCTACTGCTCGACCCTGAGA 60.394 60.000 0.00 0.00 38.28 3.27
2815 3428 3.260483 CATGTCCGCGAGCTGCTC 61.260 66.667 19.53 19.53 43.27 4.26
2816 3429 4.521062 ATGTCCGCGAGCTGCTCC 62.521 66.667 22.97 14.64 43.27 4.70
2820 3433 4.869440 CCGCGAGCTGCTCCTGAG 62.869 72.222 22.97 11.93 43.27 3.35
2830 3443 3.953300 CTCCTGAGCCTGAGAGGG 58.047 66.667 0.00 0.00 35.37 4.30
2831 3444 1.761667 CTCCTGAGCCTGAGAGGGG 60.762 68.421 0.00 0.00 35.37 4.79
2832 3445 2.767496 CCTGAGCCTGAGAGGGGG 60.767 72.222 0.00 0.00 35.37 5.40
2833 3446 2.366167 CTGAGCCTGAGAGGGGGA 59.634 66.667 0.00 0.00 35.37 4.81
2834 3447 1.761667 CTGAGCCTGAGAGGGGGAG 60.762 68.421 0.00 0.00 35.37 4.30
2835 3448 2.445654 GAGCCTGAGAGGGGGAGG 60.446 72.222 0.00 0.00 35.37 4.30
2836 3449 4.101077 AGCCTGAGAGGGGGAGGG 62.101 72.222 0.00 0.00 35.37 4.30
2861 3474 4.814294 CCACCACCGGCGAGCTAC 62.814 72.222 9.30 0.00 0.00 3.58
2862 3475 3.760035 CACCACCGGCGAGCTACT 61.760 66.667 9.30 0.00 0.00 2.57
2863 3476 3.760035 ACCACCGGCGAGCTACTG 61.760 66.667 9.30 0.00 0.00 2.74
2874 3487 2.875485 GCTACTGCTCGACCGTGA 59.125 61.111 0.00 0.00 36.03 4.35
2875 3488 1.226435 GCTACTGCTCGACCGTGAG 60.226 63.158 0.00 0.00 39.05 3.51
2876 3489 1.645704 GCTACTGCTCGACCGTGAGA 61.646 60.000 1.22 0.00 38.28 3.27
2877 3490 0.375454 CTACTGCTCGACCGTGAGAG 59.625 60.000 1.22 0.00 38.28 3.20
2878 3491 1.025113 TACTGCTCGACCGTGAGAGG 61.025 60.000 1.22 0.00 38.28 3.69
2879 3492 3.057547 CTGCTCGACCGTGAGAGGG 62.058 68.421 1.22 0.00 38.28 4.30
2880 3493 3.827898 GCTCGACCGTGAGAGGGG 61.828 72.222 1.22 0.00 38.28 4.79
2881 3494 3.141488 CTCGACCGTGAGAGGGGG 61.141 72.222 0.00 0.00 38.28 5.40
2882 3495 3.640257 CTCGACCGTGAGAGGGGGA 62.640 68.421 0.00 0.00 38.28 4.81
2883 3496 3.141488 CGACCGTGAGAGGGGGAG 61.141 72.222 0.00 0.00 35.02 4.30
2884 3497 3.462678 GACCGTGAGAGGGGGAGC 61.463 72.222 0.00 0.00 35.02 4.70
2885 3498 4.316823 ACCGTGAGAGGGGGAGCA 62.317 66.667 0.00 0.00 35.02 4.26
2886 3499 2.765807 CCGTGAGAGGGGGAGCAT 60.766 66.667 0.00 0.00 0.00 3.79
2887 3500 2.503061 CGTGAGAGGGGGAGCATG 59.497 66.667 0.00 0.00 0.00 4.06
2888 3501 2.191641 GTGAGAGGGGGAGCATGC 59.808 66.667 10.51 10.51 0.00 4.06
2889 3502 2.285592 TGAGAGGGGGAGCATGCA 60.286 61.111 21.98 0.00 0.00 3.96
2890 3503 2.372890 TGAGAGGGGGAGCATGCAG 61.373 63.158 21.98 0.00 0.00 4.41
2891 3504 3.095163 AGAGGGGGAGCATGCAGG 61.095 66.667 21.98 0.00 0.00 4.85
2892 3505 4.201122 GAGGGGGAGCATGCAGGG 62.201 72.222 21.98 0.00 0.00 4.45
2893 3506 4.765970 AGGGGGAGCATGCAGGGA 62.766 66.667 21.98 0.00 0.00 4.20
2894 3507 4.201122 GGGGGAGCATGCAGGGAG 62.201 72.222 21.98 0.00 0.00 4.30
2895 3508 3.092511 GGGGAGCATGCAGGGAGA 61.093 66.667 21.98 0.00 0.00 3.71
2896 3509 2.683465 GGGGAGCATGCAGGGAGAA 61.683 63.158 21.98 0.00 0.00 2.87
2897 3510 1.535685 GGGAGCATGCAGGGAGAAT 59.464 57.895 21.98 0.00 0.00 2.40
2898 3511 0.822532 GGGAGCATGCAGGGAGAATG 60.823 60.000 21.98 0.00 0.00 2.67
2899 3512 1.453762 GGAGCATGCAGGGAGAATGC 61.454 60.000 21.98 0.00 45.62 3.56
2900 3513 4.254721 GCATGCAGGGAGAATGCT 57.745 55.556 14.21 0.00 44.17 3.79
2901 3514 2.031360 GCATGCAGGGAGAATGCTC 58.969 57.895 14.21 0.00 44.17 4.26
2902 3515 1.783031 GCATGCAGGGAGAATGCTCG 61.783 60.000 14.21 0.00 44.17 5.03
2903 3516 0.463295 CATGCAGGGAGAATGCTCGT 60.463 55.000 0.00 0.00 44.17 4.18
2904 3517 0.463295 ATGCAGGGAGAATGCTCGTG 60.463 55.000 0.00 0.00 44.17 4.35
2905 3518 1.219124 GCAGGGAGAATGCTCGTGA 59.781 57.895 5.97 0.00 42.25 4.35
2906 3519 0.391661 GCAGGGAGAATGCTCGTGAA 60.392 55.000 5.97 0.00 42.25 3.18
2907 3520 1.363744 CAGGGAGAATGCTCGTGAAC 58.636 55.000 0.00 0.00 42.25 3.18
2908 3521 1.066573 CAGGGAGAATGCTCGTGAACT 60.067 52.381 0.00 0.00 42.25 3.01
2909 3522 1.066573 AGGGAGAATGCTCGTGAACTG 60.067 52.381 0.00 0.00 42.25 3.16
2910 3523 0.723981 GGAGAATGCTCGTGAACTGC 59.276 55.000 0.00 0.00 42.25 4.40
2942 3555 1.600763 GGAGGGGGAGGAGGTAAGGA 61.601 65.000 0.00 0.00 0.00 3.36
2943 3556 0.398806 GAGGGGGAGGAGGTAAGGAC 60.399 65.000 0.00 0.00 0.00 3.85
2952 3565 2.666812 GGTAAGGACCACCACCGG 59.333 66.667 0.00 0.00 46.12 5.28
2953 3566 2.046604 GTAAGGACCACCACCGGC 60.047 66.667 0.00 0.00 38.94 6.13
2954 3567 2.203877 TAAGGACCACCACCGGCT 60.204 61.111 0.00 0.00 38.94 5.52
2955 3568 1.844289 TAAGGACCACCACCGGCTT 60.844 57.895 0.00 0.00 38.94 4.35
2956 3569 2.119484 TAAGGACCACCACCGGCTTG 62.119 60.000 0.00 0.00 38.94 4.01
2975 3588 1.819632 CCACCGGTAAGATGCTGGC 60.820 63.158 6.87 0.00 35.84 4.85
2978 3591 1.524621 CCGGTAAGATGCTGGCCTG 60.525 63.158 3.32 4.26 0.00 4.85
2996 3609 0.468648 TGCTGCTGGATCCTCAGATG 59.531 55.000 27.68 11.19 36.93 2.90
2998 3611 1.421480 CTGCTGGATCCTCAGATGGA 58.579 55.000 22.33 4.73 40.82 3.41
3013 3626 2.247111 AGATGGAGAGGATGTGAGGAGT 59.753 50.000 0.00 0.00 0.00 3.85
3016 3629 2.311841 TGGAGAGGATGTGAGGAGTACA 59.688 50.000 0.00 0.00 0.00 2.90
3019 3632 2.043115 AGAGGATGTGAGGAGTACACCA 59.957 50.000 12.17 0.00 37.45 4.17
3026 3639 2.166664 GTGAGGAGTACACCACCATCTC 59.833 54.545 12.17 0.00 32.84 2.75
3048 3661 2.359602 CCAGTGAGCTGCTGGTGG 60.360 66.667 20.34 7.02 46.22 4.61
3062 3675 2.674220 GGTGGAGCTTGAGAGGGGG 61.674 68.421 0.00 0.00 0.00 5.40
3063 3676 1.613630 GTGGAGCTTGAGAGGGGGA 60.614 63.158 0.00 0.00 0.00 4.81
3106 3719 2.484264 GCTTGTCGCTGTTTATTGGAGT 59.516 45.455 0.00 0.00 35.14 3.85
3114 3727 3.440173 GCTGTTTATTGGAGTTGCTGCTA 59.560 43.478 0.00 0.00 0.00 3.49
3116 3729 3.440173 TGTTTATTGGAGTTGCTGCTAGC 59.560 43.478 8.10 8.10 42.82 3.42
3117 3730 2.332063 TATTGGAGTTGCTGCTAGCC 57.668 50.000 13.29 0.00 41.51 3.93
3118 3731 0.394899 ATTGGAGTTGCTGCTAGCCC 60.395 55.000 13.29 4.53 41.51 5.19
3147 3760 1.160329 GCAGTTGTTGCGTGAGAGGT 61.160 55.000 0.00 0.00 44.09 3.85
3148 3761 0.861837 CAGTTGTTGCGTGAGAGGTC 59.138 55.000 0.00 0.00 0.00 3.85
3171 3785 1.767681 GAGGAATGAGGACAGGAGCAT 59.232 52.381 0.00 0.00 0.00 3.79
3178 3792 2.840038 TGAGGACAGGAGCATTACACAT 59.160 45.455 0.00 0.00 0.00 3.21
3188 3802 1.372582 CATTACACATGCTCACCGCT 58.627 50.000 0.00 0.00 40.11 5.52
3240 3872 0.563173 TAGGTCAGGAGGATGGGAGG 59.437 60.000 0.00 0.00 0.00 4.30
3242 3874 1.768077 GTCAGGAGGATGGGAGGGG 60.768 68.421 0.00 0.00 0.00 4.79
3243 3875 2.264378 TCAGGAGGATGGGAGGGGT 61.264 63.158 0.00 0.00 0.00 4.95
3244 3876 1.308216 CAGGAGGATGGGAGGGGTT 60.308 63.158 0.00 0.00 0.00 4.11
3245 3877 1.308216 AGGAGGATGGGAGGGGTTG 60.308 63.158 0.00 0.00 0.00 3.77
3246 3878 2.597903 GAGGATGGGAGGGGTTGC 59.402 66.667 0.00 0.00 0.00 4.17
3247 3879 3.406595 GAGGATGGGAGGGGTTGCG 62.407 68.421 0.00 0.00 0.00 4.85
3263 3919 2.502093 CGCCGCACAGGGGTATTA 59.498 61.111 1.99 0.00 46.82 0.98
3276 3932 5.162749 ACAGGGGTATTAGGATAGCTAGGTT 60.163 44.000 0.00 0.00 36.66 3.50
3295 3951 3.244422 GGTTGAGACATACACTGGGTTGA 60.244 47.826 0.00 0.00 0.00 3.18
3299 3955 1.003118 GACATACACTGGGTTGAGCCA 59.997 52.381 1.52 1.52 39.65 4.75
3303 3959 4.079787 ACATACACTGGGTTGAGCCATATT 60.080 41.667 1.90 0.00 39.65 1.28
3305 3961 2.026641 CACTGGGTTGAGCCATATTGG 58.973 52.381 1.90 0.00 41.55 3.16
3321 3977 0.918983 TTGGGCAAGTATCTGGGAGG 59.081 55.000 0.00 0.00 0.00 4.30
3343 3999 0.036164 TCCCCACGTGTCAGGAATTG 59.964 55.000 15.65 0.00 0.00 2.32
3353 4011 6.360681 CACGTGTCAGGAATTGAAATCTTTTC 59.639 38.462 7.58 0.00 37.61 2.29
3368 4026 9.814899 TGAAATCTTTTCTTATTGCTTGAAACA 57.185 25.926 2.08 0.00 30.66 2.83
3371 4029 6.205784 TCTTTTCTTATTGCTTGAAACACCG 58.794 36.000 0.00 0.00 30.66 4.94
3376 4034 1.317613 TTGCTTGAAACACCGATGCT 58.682 45.000 0.00 0.00 0.00 3.79
3378 4036 1.001487 TGCTTGAAACACCGATGCTTG 60.001 47.619 0.00 0.00 0.00 4.01
3386 4044 1.209128 CACCGATGCTTGACCGATAC 58.791 55.000 0.00 0.00 0.00 2.24
3387 4045 0.821517 ACCGATGCTTGACCGATACA 59.178 50.000 0.00 0.00 0.00 2.29
3403 4061 4.268767 GATACATATCGACCGCGTATCA 57.731 45.455 4.92 0.00 38.73 2.15
3407 4065 0.250424 TATCGACCGCGTATCAGGGA 60.250 55.000 4.92 0.00 38.98 4.20
3412 4070 0.828022 ACCGCGTATCAGGGATGAAA 59.172 50.000 4.92 0.00 0.00 2.69
3413 4071 1.416401 ACCGCGTATCAGGGATGAAAT 59.584 47.619 4.92 0.00 0.00 2.17
3432 4090 7.788375 GATGAAATCCGTATCTGGTACAGGTAG 60.788 44.444 0.00 0.00 45.34 3.18
3440 4098 1.311859 TGGTACAGGTAGCCGATACG 58.688 55.000 6.22 0.00 34.99 3.06
3451 4109 4.343581 CGATACGGATGCACCAGG 57.656 61.111 0.00 0.00 38.90 4.45
3459 4117 4.070265 ATGCACCAGGCCCAGCAT 62.070 61.111 13.98 13.98 43.89 3.79
3464 4122 0.396139 CACCAGGCCCAGCATGTATT 60.396 55.000 0.00 0.00 38.76 1.89
3465 4123 0.396139 ACCAGGCCCAGCATGTATTG 60.396 55.000 0.00 0.00 38.76 1.90
3549 4236 9.194972 CCTTGGCTATATTATATGAGAGAGTGA 57.805 37.037 0.00 0.00 0.00 3.41
3584 4271 8.567948 TGGATTTTAACTCAACTGAAACTGATC 58.432 33.333 0.00 0.00 0.00 2.92
3599 4286 8.187913 TGAAACTGATCATTAACCATGGAAAA 57.812 30.769 21.47 12.36 33.07 2.29
3625 4314 5.986501 CAGAAGGACTCTGGTAACTTAGT 57.013 43.478 0.00 0.00 46.89 2.24
3658 4353 6.822676 CAGATGGAAGAATCTTAACTTGAGCT 59.177 38.462 0.00 0.00 34.60 4.09
3669 4364 6.273071 TCTTAACTTGAGCTTTTTGGCTTTC 58.727 36.000 0.00 0.00 43.20 2.62
3832 4527 0.526211 ACTGAGCTGTAACATCGCGA 59.474 50.000 13.09 13.09 0.00 5.87
3906 4601 7.592938 TCTGTTTATTGTTTGGCTTCATACTG 58.407 34.615 0.00 0.00 0.00 2.74
3973 4668 5.305585 TGGTGTTGTCTTATTCTCCTTGTC 58.694 41.667 0.00 0.00 0.00 3.18
4004 4699 3.434309 AGGTTCTTTGTTATGCTGGCAT 58.566 40.909 12.76 12.76 40.19 4.40
4058 4753 7.453752 ACAATAGAGGTAAGTTACTGTTCCAGA 59.546 37.037 12.65 0.00 35.18 3.86
4121 4816 8.410673 TTGTTTGATAATTTACTGCCACCTTA 57.589 30.769 0.00 0.00 0.00 2.69
4205 4900 2.026641 CCATCGGTTTGATCAAGGCAT 58.973 47.619 8.41 0.00 34.13 4.40
4228 4923 8.078596 GCATGAGGAAGAATATTCAAATGGTAC 58.921 37.037 17.56 2.53 0.00 3.34
4261 4956 2.072298 GCAGCACCAACAACAAAAACA 58.928 42.857 0.00 0.00 0.00 2.83
4520 5220 2.181205 GATCAGAGACGAAGAACAGCG 58.819 52.381 0.00 0.00 0.00 5.18
4546 5246 5.415389 TGCTGCATAAACACAACATGTAGAT 59.585 36.000 0.00 0.00 42.31 1.98
4552 5252 2.811902 CACAACATGTAGATGTGCGG 57.188 50.000 14.45 2.52 42.84 5.69
4581 5281 5.258841 TCTGCTGACCAGATTGATCATTTT 58.741 37.500 0.00 0.00 45.44 1.82
4589 5289 6.131264 ACCAGATTGATCATTTTCTGCCATA 58.869 36.000 18.51 0.00 35.38 2.74
4627 5327 4.019983 GAGGTGAAGAGCTCGGGA 57.980 61.111 8.37 0.00 36.99 5.14
4664 5364 7.606456 TCTTGTAAATCATGTAAACCTCACCTC 59.394 37.037 0.00 0.00 0.00 3.85
4722 5422 5.813672 TGAGTTTTGAGTACTGTTGTGTACC 59.186 40.000 0.00 0.00 42.58 3.34
4723 5423 5.736813 AGTTTTGAGTACTGTTGTGTACCA 58.263 37.500 0.00 0.00 42.58 3.25
4724 5424 5.815740 AGTTTTGAGTACTGTTGTGTACCAG 59.184 40.000 0.00 0.00 42.58 4.00
4778 5523 5.163457 TGGAAATTGGAAGTGTGGAAGAAAC 60.163 40.000 0.00 0.00 0.00 2.78
4779 5524 4.568152 AATTGGAAGTGTGGAAGAAACG 57.432 40.909 0.00 0.00 0.00 3.60
4780 5525 1.305201 TGGAAGTGTGGAAGAAACGC 58.695 50.000 0.00 0.00 0.00 4.84
4781 5526 1.305201 GGAAGTGTGGAAGAAACGCA 58.695 50.000 0.00 0.00 0.00 5.24
4782 5527 1.264288 GGAAGTGTGGAAGAAACGCAG 59.736 52.381 0.00 0.00 0.00 5.18
4783 5528 0.663153 AAGTGTGGAAGAAACGCAGC 59.337 50.000 0.00 0.00 0.00 5.25
4784 5529 0.463654 AGTGTGGAAGAAACGCAGCA 60.464 50.000 0.00 0.00 0.00 4.41
4785 5530 0.380378 GTGTGGAAGAAACGCAGCAA 59.620 50.000 0.00 0.00 0.00 3.91
4808 5553 7.042254 GCAAGCTTTGTCTGATTTTCTTGATTT 60.042 33.333 0.00 0.00 33.52 2.17
4909 5655 6.529829 TGATCAGTTGTTTGTTTTGCAGTAAC 59.470 34.615 0.00 6.79 0.00 2.50
5037 5783 6.972901 GGCCTTTTACTGCAGTATTATTGTTC 59.027 38.462 26.54 11.16 0.00 3.18
5104 5850 1.528309 AAAACACCAGCCTCCGTGG 60.528 57.895 0.00 0.00 41.30 4.94
5183 5942 6.371809 TCTTGAAACGAAGTGCATAAAACT 57.628 33.333 0.00 0.00 45.00 2.66
5236 5995 9.551734 CTTCTTTACATCATTGATGAGTGGATA 57.448 33.333 28.81 10.21 42.09 2.59
5300 6059 0.388649 CTTCTTCGGTCGTGGGAGTG 60.389 60.000 0.00 0.00 0.00 3.51
5320 6079 1.076533 GCGACGGACACACGATTGAT 61.077 55.000 0.00 0.00 37.61 2.57
5383 6142 5.543507 ATCAGGATACCTCATCTGTGTTC 57.456 43.478 0.00 0.00 33.78 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 168 1.921243 GCGGGTGCATGTTTTTATCC 58.079 50.000 0.00 0.00 42.15 2.59
258 673 1.473434 CGCGAAAGAGAGCCCCTATTT 60.473 52.381 0.00 0.00 38.86 1.40
293 708 0.107017 TGCATAGCCTTCCCAAGCTC 60.107 55.000 0.00 0.00 40.56 4.09
304 719 2.880890 CCTATCAGTTTGGTGCATAGCC 59.119 50.000 0.00 0.00 0.00 3.93
320 735 7.882271 ACAGATATTTCAGATTTCTGGCCTATC 59.118 37.037 3.32 10.31 43.91 2.08
411 826 2.820787 TCAACCAACGTTTTTGTCTGGT 59.179 40.909 15.63 9.15 42.21 4.00
418 833 2.969628 TGCCATCAACCAACGTTTTT 57.030 40.000 0.00 0.00 0.00 1.94
419 834 2.606795 CGATGCCATCAACCAACGTTTT 60.607 45.455 5.40 0.00 0.00 2.43
424 839 0.734889 CCTCGATGCCATCAACCAAC 59.265 55.000 5.40 0.00 0.00 3.77
445 860 3.134574 AGCAAACGGTCAAAGGTGATA 57.865 42.857 0.00 0.00 35.80 2.15
468 883 9.492973 AATCATCTTAGTTCCAACCAATTTTTG 57.507 29.630 0.00 0.00 0.00 2.44
504 919 6.625081 CGGATTGTCCTAGGGATTTGAAAAAC 60.625 42.308 9.46 0.00 33.30 2.43
505 920 5.417580 CGGATTGTCCTAGGGATTTGAAAAA 59.582 40.000 9.46 0.00 33.30 1.94
516 934 2.007049 GCACACACGGATTGTCCTAGG 61.007 57.143 0.82 0.82 35.67 3.02
529 947 3.674753 GGATTATTTGTTGCAGCACACAC 59.325 43.478 1.37 0.00 0.00 3.82
548 966 9.601217 GGTATATCACGAGCTAATTTAATGGAT 57.399 33.333 0.00 0.00 0.00 3.41
670 1088 9.809096 CTTCTCTTATGCACTAATTCTACTTCA 57.191 33.333 0.00 0.00 0.00 3.02
671 1089 9.810545 ACTTCTCTTATGCACTAATTCTACTTC 57.189 33.333 0.00 0.00 0.00 3.01
693 1111 8.514594 TGACATTCAATCACCTTCATTTACTTC 58.485 33.333 0.00 0.00 0.00 3.01
746 1169 1.477558 CCCTTCATCCAATCTTCCCCG 60.478 57.143 0.00 0.00 0.00 5.73
760 1183 1.227249 TTCTTTCCACCACCCCTTCA 58.773 50.000 0.00 0.00 0.00 3.02
826 1306 2.037772 GTCCTTGATGGGCGACAGATAT 59.962 50.000 0.00 0.00 36.20 1.63
834 1314 0.469917 ATGTAGGTCCTTGATGGGCG 59.530 55.000 0.00 0.00 42.62 6.13
863 1343 3.879892 GGGCTGCTTAATCTCCTTTAGTG 59.120 47.826 0.00 0.00 0.00 2.74
864 1344 3.523564 TGGGCTGCTTAATCTCCTTTAGT 59.476 43.478 0.00 0.00 0.00 2.24
867 1347 2.310052 ACTGGGCTGCTTAATCTCCTTT 59.690 45.455 0.00 0.00 0.00 3.11
870 1350 2.436173 ACTACTGGGCTGCTTAATCTCC 59.564 50.000 0.00 0.00 0.00 3.71
877 1357 3.347216 CATAAACACTACTGGGCTGCTT 58.653 45.455 0.00 0.00 0.00 3.91
1302 1782 5.663556 AGGAAATCTAACAGGAGGACTAAGG 59.336 44.000 0.00 0.00 0.00 2.69
1306 1786 4.226168 CCAAGGAAATCTAACAGGAGGACT 59.774 45.833 0.00 0.00 0.00 3.85
1388 1868 4.102524 AGGTGTCAGGTTGAATTCACTACA 59.897 41.667 7.89 5.63 0.00 2.74
1389 1869 4.642429 AGGTGTCAGGTTGAATTCACTAC 58.358 43.478 7.89 4.60 0.00 2.73
1530 2010 8.453238 TTGTGTGCTCCTAAACTTTATTTGTA 57.547 30.769 0.00 0.00 0.00 2.41
1534 2014 9.297037 AGTTATTGTGTGCTCCTAAACTTTATT 57.703 29.630 0.00 0.00 0.00 1.40
1535 2015 8.730680 CAGTTATTGTGTGCTCCTAAACTTTAT 58.269 33.333 0.00 0.00 0.00 1.40
1538 2018 6.296026 TCAGTTATTGTGTGCTCCTAAACTT 58.704 36.000 0.00 0.00 0.00 2.66
1539 2019 5.865085 TCAGTTATTGTGTGCTCCTAAACT 58.135 37.500 0.00 0.00 0.00 2.66
1540 2020 6.554334 TTCAGTTATTGTGTGCTCCTAAAC 57.446 37.500 0.00 0.00 0.00 2.01
1551 2032 7.798596 AGCTCTCCAATATTCAGTTATTGTG 57.201 36.000 4.14 0.00 37.71 3.33
1589 2070 4.764823 GTCCCTGTTGTGACCAAATATCAA 59.235 41.667 0.00 0.00 30.94 2.57
1590 2071 4.042809 AGTCCCTGTTGTGACCAAATATCA 59.957 41.667 0.00 0.00 30.94 2.15
1985 2466 6.710597 ATACTAAAGTCATGCTCCGTTCTA 57.289 37.500 0.00 0.00 0.00 2.10
1986 2467 3.963428 ACTAAAGTCATGCTCCGTTCT 57.037 42.857 0.00 0.00 0.00 3.01
1991 2472 9.277783 ACATAATGAATACTAAAGTCATGCTCC 57.722 33.333 0.00 0.00 32.38 4.70
2024 2505 4.030216 TGGTCAGCTCACTTACATGGATA 58.970 43.478 0.00 0.00 0.00 2.59
2070 2552 4.345257 ACGGGAAGTGATTGCTGACTATAT 59.655 41.667 0.00 0.00 0.00 0.86
2072 2554 2.501723 ACGGGAAGTGATTGCTGACTAT 59.498 45.455 0.00 0.00 0.00 2.12
2073 2555 1.899814 ACGGGAAGTGATTGCTGACTA 59.100 47.619 0.00 0.00 0.00 2.59
2085 2567 7.191593 ACTAATATTGAAGGTAACGGGAAGT 57.808 36.000 0.00 0.00 46.39 3.01
2091 2573 9.256477 TCATGCTAACTAATATTGAAGGTAACG 57.744 33.333 0.00 0.00 46.39 3.18
2112 2695 4.038282 TCTTGCCAATGGATAATGTCATGC 59.962 41.667 2.05 0.00 0.00 4.06
2117 2700 8.926374 TGAAAATATCTTGCCAATGGATAATGT 58.074 29.630 2.05 0.00 0.00 2.71
2192 2777 1.001181 TGGCCTTCATGAGCAAAAAGC 59.999 47.619 3.32 0.42 46.19 3.51
2199 2784 1.339438 TGTTCTCTGGCCTTCATGAGC 60.339 52.381 3.32 0.00 0.00 4.26
2213 2806 3.139077 ACAACTGGACGGAAATGTTCTC 58.861 45.455 0.00 0.00 0.00 2.87
2224 2817 7.953158 ATCATCATAAAGATACAACTGGACG 57.047 36.000 0.00 0.00 34.43 4.79
2247 2840 5.729718 ACCCTTGGGTTTGACTAGTGTATAT 59.270 40.000 5.34 0.00 0.00 0.86
2248 2841 5.095809 ACCCTTGGGTTTGACTAGTGTATA 58.904 41.667 5.34 0.00 0.00 1.47
2258 2851 3.501385 CCCTAATCAACCCTTGGGTTTGA 60.501 47.826 20.48 19.41 0.00 2.69
2267 2860 5.347978 ACTGTTAGTACCCTAATCAACCCT 58.652 41.667 0.00 0.00 35.67 4.34
2277 2870 4.019591 GGTTCCAATGACTGTTAGTACCCT 60.020 45.833 0.00 0.00 0.00 4.34
2290 2883 2.236146 ACTAGCGTGATGGTTCCAATGA 59.764 45.455 0.00 0.00 0.00 2.57
2291 2884 2.609459 GACTAGCGTGATGGTTCCAATG 59.391 50.000 0.00 0.00 0.00 2.82
2293 2886 1.899814 AGACTAGCGTGATGGTTCCAA 59.100 47.619 0.00 0.00 0.00 3.53
2335 2928 5.084519 ACTGGTATGTGTATCCATATCGGT 58.915 41.667 1.07 1.07 41.21 4.69
2336 2929 5.661056 ACTGGTATGTGTATCCATATCGG 57.339 43.478 0.00 0.00 39.62 4.18
2337 2930 7.251281 CAGTACTGGTATGTGTATCCATATCG 58.749 42.308 15.49 0.00 32.18 2.92
2355 2948 2.636830 CTCTGAATTGGCCCAGTACTG 58.363 52.381 16.34 16.34 0.00 2.74
2356 2949 1.561542 CCTCTGAATTGGCCCAGTACT 59.438 52.381 0.00 0.00 0.00 2.73
2360 2953 3.930504 GCCTCTGAATTGGCCCAG 58.069 61.111 0.00 0.00 43.11 4.45
2388 2981 1.968493 ACGTATCTCCGTATGGGCATT 59.032 47.619 0.00 0.00 39.73 3.56
2389 2982 1.629043 ACGTATCTCCGTATGGGCAT 58.371 50.000 0.00 0.00 39.73 4.40
2390 2983 1.405872 AACGTATCTCCGTATGGGCA 58.594 50.000 0.00 0.00 40.85 5.36
2395 2988 8.761575 TTTAAAGTCAAAACGTATCTCCGTAT 57.238 30.769 0.00 0.00 40.85 3.06
2438 3031 9.825109 GCTCTTATATTTCTTTACAGAAGGAGT 57.175 33.333 0.00 0.00 40.28 3.85
2439 3032 9.823647 TGCTCTTATATTTCTTTACAGAAGGAG 57.176 33.333 0.00 0.00 40.28 3.69
2474 3067 8.854614 AAGAGCATTCAAATCACTACTTTAGT 57.145 30.769 0.00 0.00 40.28 2.24
2491 3084 9.566432 CCCTCTGTAAAGAAATATAAGAGCATT 57.434 33.333 0.00 0.00 0.00 3.56
2492 3085 8.938883 TCCCTCTGTAAAGAAATATAAGAGCAT 58.061 33.333 0.00 0.00 0.00 3.79
2493 3086 8.319057 TCCCTCTGTAAAGAAATATAAGAGCA 57.681 34.615 0.00 0.00 0.00 4.26
2494 3087 9.785982 ATTCCCTCTGTAAAGAAATATAAGAGC 57.214 33.333 0.00 0.00 0.00 4.09
2502 3095 9.588096 AAACAACTATTCCCTCTGTAAAGAAAT 57.412 29.630 0.00 0.00 0.00 2.17
2503 3096 8.990163 AAACAACTATTCCCTCTGTAAAGAAA 57.010 30.769 0.00 0.00 0.00 2.52
2504 3097 9.498176 GTAAACAACTATTCCCTCTGTAAAGAA 57.502 33.333 0.00 0.00 0.00 2.52
2505 3098 8.877195 AGTAAACAACTATTCCCTCTGTAAAGA 58.123 33.333 0.00 0.00 36.36 2.52
2506 3099 8.936864 CAGTAAACAACTATTCCCTCTGTAAAG 58.063 37.037 0.00 0.00 35.76 1.85
2507 3100 7.881232 CCAGTAAACAACTATTCCCTCTGTAAA 59.119 37.037 0.00 0.00 35.76 2.01
2508 3101 7.391620 CCAGTAAACAACTATTCCCTCTGTAA 58.608 38.462 0.00 0.00 35.76 2.41
2509 3102 6.070424 CCCAGTAAACAACTATTCCCTCTGTA 60.070 42.308 0.00 0.00 35.76 2.74
2510 3103 5.280521 CCCAGTAAACAACTATTCCCTCTGT 60.281 44.000 0.00 0.00 35.76 3.41
2511 3104 5.045869 TCCCAGTAAACAACTATTCCCTCTG 60.046 44.000 0.00 0.00 35.76 3.35
2512 3105 5.098663 TCCCAGTAAACAACTATTCCCTCT 58.901 41.667 0.00 0.00 35.76 3.69
2513 3106 5.431179 TCCCAGTAAACAACTATTCCCTC 57.569 43.478 0.00 0.00 35.76 4.30
2514 3107 5.073965 TGTTCCCAGTAAACAACTATTCCCT 59.926 40.000 0.00 0.00 35.76 4.20
2515 3108 5.318630 TGTTCCCAGTAAACAACTATTCCC 58.681 41.667 0.00 0.00 35.76 3.97
2516 3109 5.106277 GCTGTTCCCAGTAAACAACTATTCC 60.106 44.000 0.00 0.00 41.02 3.01
2517 3110 5.472137 TGCTGTTCCCAGTAAACAACTATTC 59.528 40.000 0.00 0.00 41.02 1.75
2518 3111 5.381757 TGCTGTTCCCAGTAAACAACTATT 58.618 37.500 0.00 0.00 41.02 1.73
2519 3112 4.980573 TGCTGTTCCCAGTAAACAACTAT 58.019 39.130 0.00 0.00 41.02 2.12
2520 3113 4.101898 TCTGCTGTTCCCAGTAAACAACTA 59.898 41.667 0.00 0.00 41.02 2.24
2521 3114 3.118038 TCTGCTGTTCCCAGTAAACAACT 60.118 43.478 0.00 0.00 41.02 3.16
2522 3115 3.211045 TCTGCTGTTCCCAGTAAACAAC 58.789 45.455 0.00 0.00 41.02 3.32
2523 3116 3.569194 TCTGCTGTTCCCAGTAAACAA 57.431 42.857 0.00 0.00 41.02 2.83
2524 3117 3.788227 ATCTGCTGTTCCCAGTAAACA 57.212 42.857 0.00 0.00 41.02 2.83
2525 3118 4.095036 GCTAATCTGCTGTTCCCAGTAAAC 59.905 45.833 0.00 0.00 41.02 2.01
2532 3125 2.991250 TCAAGCTAATCTGCTGTTCCC 58.009 47.619 0.00 0.00 43.24 3.97
2540 3133 6.192234 AGAGCAAAACATCAAGCTAATCTG 57.808 37.500 0.00 0.00 37.48 2.90
2548 3141 7.699812 GCTATAGGAAAAGAGCAAAACATCAAG 59.300 37.037 1.04 0.00 34.96 3.02
2575 3172 9.573166 TGCTATTTCTATGTAATATGCACCTTT 57.427 29.630 0.00 0.00 0.00 3.11
2589 3186 8.971321 GGTGTTATTTTGCATGCTATTTCTATG 58.029 33.333 20.33 0.00 0.00 2.23
2606 3203 6.994421 AACCTCTCCATTTTGGTGTTATTT 57.006 33.333 0.00 0.00 39.03 1.40
2632 3229 0.461693 GCTCTCCTACCTGCAAGCTG 60.462 60.000 0.00 0.00 0.00 4.24
2643 3240 4.044698 TCCTATCTAATGGCAGCTCTCCTA 59.955 45.833 0.00 0.00 0.00 2.94
2647 3244 5.046448 CAGATTCCTATCTAATGGCAGCTCT 60.046 44.000 0.00 0.00 39.11 4.09
2658 3255 6.216662 CCCTCTCTCCTACAGATTCCTATCTA 59.783 46.154 0.00 0.00 39.11 1.98
2659 3256 5.015178 CCCTCTCTCCTACAGATTCCTATCT 59.985 48.000 0.00 0.00 41.89 1.98
2660 3257 5.261216 CCCTCTCTCCTACAGATTCCTATC 58.739 50.000 0.00 0.00 0.00 2.08
2661 3258 4.045334 CCCCTCTCTCCTACAGATTCCTAT 59.955 50.000 0.00 0.00 0.00 2.57
2662 3259 3.399644 CCCCTCTCTCCTACAGATTCCTA 59.600 52.174 0.00 0.00 0.00 2.94
2663 3260 2.178984 CCCCTCTCTCCTACAGATTCCT 59.821 54.545 0.00 0.00 0.00 3.36
2665 3262 3.496331 CTCCCCTCTCTCCTACAGATTC 58.504 54.545 0.00 0.00 0.00 2.52
2666 3263 2.178984 CCTCCCCTCTCTCCTACAGATT 59.821 54.545 0.00 0.00 0.00 2.40
2697 3294 1.341156 GGTATGCTCTGGTGCTCCCT 61.341 60.000 1.59 0.00 0.00 4.20
2701 3298 1.279496 TCAAGGTATGCTCTGGTGCT 58.721 50.000 0.00 0.00 0.00 4.40
2711 3308 0.249447 TCGGCTCGCATCAAGGTATG 60.249 55.000 0.00 0.00 0.00 2.39
2724 3321 2.914777 GATGGTGGACTGCTCGGCTC 62.915 65.000 0.00 0.00 0.00 4.70
2725 3322 3.005539 ATGGTGGACTGCTCGGCT 61.006 61.111 0.00 0.00 0.00 5.52
2726 3323 2.512515 GATGGTGGACTGCTCGGC 60.513 66.667 0.00 0.00 0.00 5.54
2727 3324 2.202797 CGATGGTGGACTGCTCGG 60.203 66.667 0.00 0.00 0.00 4.63
2760 3373 0.394488 TCTCAGGGTCGAGCAGTAGG 60.394 60.000 17.59 2.49 32.75 3.18
2779 3392 3.710631 TCCCTGCATCCTCCCCCT 61.711 66.667 0.00 0.00 0.00 4.79
2813 3426 1.761667 CCCCTCTCAGGCTCAGGAG 60.762 68.421 5.41 0.07 32.73 3.69
2814 3427 2.366167 CCCCTCTCAGGCTCAGGA 59.634 66.667 5.41 0.00 32.73 3.86
2815 3428 2.767496 CCCCCTCTCAGGCTCAGG 60.767 72.222 0.00 0.00 32.73 3.86
2816 3429 1.761667 CTCCCCCTCTCAGGCTCAG 60.762 68.421 0.00 0.00 32.73 3.35
2817 3430 2.366167 CTCCCCCTCTCAGGCTCA 59.634 66.667 0.00 0.00 32.73 4.26
2818 3431 2.445654 CCTCCCCCTCTCAGGCTC 60.446 72.222 0.00 0.00 32.73 4.70
2819 3432 4.101077 CCCTCCCCCTCTCAGGCT 62.101 72.222 0.00 0.00 32.73 4.58
2844 3457 4.814294 GTAGCTCGCCGGTGGTGG 62.814 72.222 16.49 7.15 33.43 4.61
2845 3458 3.760035 AGTAGCTCGCCGGTGGTG 61.760 66.667 16.49 9.80 33.99 4.17
2846 3459 3.760035 CAGTAGCTCGCCGGTGGT 61.760 66.667 16.49 8.12 0.00 4.16
2857 3470 1.226435 CTCACGGTCGAGCAGTAGC 60.226 63.158 15.89 0.00 42.56 3.58
2858 3471 0.375454 CTCTCACGGTCGAGCAGTAG 59.625 60.000 15.89 7.98 32.75 2.57
2859 3472 1.025113 CCTCTCACGGTCGAGCAGTA 61.025 60.000 15.89 0.00 32.75 2.74
2860 3473 2.336478 CCTCTCACGGTCGAGCAGT 61.336 63.158 15.89 10.57 32.75 4.40
2861 3474 2.487428 CCTCTCACGGTCGAGCAG 59.513 66.667 15.89 9.92 32.75 4.24
2862 3475 3.062466 CCCTCTCACGGTCGAGCA 61.062 66.667 15.89 0.00 32.75 4.26
2863 3476 3.827898 CCCCTCTCACGGTCGAGC 61.828 72.222 4.06 4.06 32.75 5.03
2864 3477 3.141488 CCCCCTCTCACGGTCGAG 61.141 72.222 0.00 2.43 0.00 4.04
2865 3478 3.640257 CTCCCCCTCTCACGGTCGA 62.640 68.421 0.00 0.00 0.00 4.20
2866 3479 3.141488 CTCCCCCTCTCACGGTCG 61.141 72.222 0.00 0.00 0.00 4.79
2867 3480 3.462678 GCTCCCCCTCTCACGGTC 61.463 72.222 0.00 0.00 0.00 4.79
2868 3481 3.625632 ATGCTCCCCCTCTCACGGT 62.626 63.158 0.00 0.00 0.00 4.83
2869 3482 2.765807 ATGCTCCCCCTCTCACGG 60.766 66.667 0.00 0.00 0.00 4.94
2870 3483 2.503061 CATGCTCCCCCTCTCACG 59.497 66.667 0.00 0.00 0.00 4.35
2871 3484 2.191641 GCATGCTCCCCCTCTCAC 59.808 66.667 11.37 0.00 0.00 3.51
2872 3485 2.285592 TGCATGCTCCCCCTCTCA 60.286 61.111 20.33 0.00 0.00 3.27
2873 3486 2.509916 CTGCATGCTCCCCCTCTC 59.490 66.667 20.33 0.00 0.00 3.20
2874 3487 3.095163 CCTGCATGCTCCCCCTCT 61.095 66.667 20.33 0.00 0.00 3.69
2875 3488 4.201122 CCCTGCATGCTCCCCCTC 62.201 72.222 20.33 0.00 0.00 4.30
2876 3489 4.765970 TCCCTGCATGCTCCCCCT 62.766 66.667 20.33 0.00 0.00 4.79
2877 3490 4.201122 CTCCCTGCATGCTCCCCC 62.201 72.222 20.33 0.00 0.00 5.40
2878 3491 2.004408 ATTCTCCCTGCATGCTCCCC 62.004 60.000 20.33 0.00 0.00 4.81
2879 3492 0.822532 CATTCTCCCTGCATGCTCCC 60.823 60.000 20.33 0.00 0.00 4.30
2880 3493 1.453762 GCATTCTCCCTGCATGCTCC 61.454 60.000 20.33 0.00 40.23 4.70
2881 3494 2.031360 GCATTCTCCCTGCATGCTC 58.969 57.895 20.33 0.00 40.23 4.26
2882 3495 4.254721 GCATTCTCCCTGCATGCT 57.745 55.556 20.33 0.00 40.23 3.79
2883 3496 1.783031 CGAGCATTCTCCCTGCATGC 61.783 60.000 11.82 11.82 43.15 4.06
2884 3497 0.463295 ACGAGCATTCTCCCTGCATG 60.463 55.000 0.00 0.00 42.15 4.06
2885 3498 0.463295 CACGAGCATTCTCCCTGCAT 60.463 55.000 0.00 0.00 42.15 3.96
2886 3499 1.078918 CACGAGCATTCTCCCTGCA 60.079 57.895 0.00 0.00 42.15 4.41
2887 3500 0.391661 TTCACGAGCATTCTCCCTGC 60.392 55.000 0.00 0.00 39.97 4.85
2888 3501 1.066573 AGTTCACGAGCATTCTCCCTG 60.067 52.381 0.00 0.00 35.94 4.45
2889 3502 1.066573 CAGTTCACGAGCATTCTCCCT 60.067 52.381 0.00 0.00 35.94 4.20
2890 3503 1.363744 CAGTTCACGAGCATTCTCCC 58.636 55.000 0.00 0.00 35.94 4.30
2891 3504 0.723981 GCAGTTCACGAGCATTCTCC 59.276 55.000 0.00 0.00 35.94 3.71
2892 3505 1.658095 GAGCAGTTCACGAGCATTCTC 59.342 52.381 0.00 0.00 35.99 2.87
2893 3506 1.674221 GGAGCAGTTCACGAGCATTCT 60.674 52.381 0.00 0.00 0.00 2.40
2894 3507 0.723981 GGAGCAGTTCACGAGCATTC 59.276 55.000 0.00 0.00 0.00 2.67
2895 3508 0.322975 AGGAGCAGTTCACGAGCATT 59.677 50.000 0.00 0.00 0.00 3.56
2896 3509 0.390866 CAGGAGCAGTTCACGAGCAT 60.391 55.000 0.00 0.00 0.00 3.79
2897 3510 1.005748 CAGGAGCAGTTCACGAGCA 60.006 57.895 0.00 0.00 0.00 4.26
2898 3511 1.739562 CCAGGAGCAGTTCACGAGC 60.740 63.158 0.00 0.00 0.00 5.03
2899 3512 0.108898 CTCCAGGAGCAGTTCACGAG 60.109 60.000 2.60 0.00 0.00 4.18
2900 3513 1.967535 CTCCAGGAGCAGTTCACGA 59.032 57.895 2.60 0.00 0.00 4.35
2901 3514 4.586618 CTCCAGGAGCAGTTCACG 57.413 61.111 2.60 0.00 0.00 4.35
2910 3523 2.767496 CCTCCCAGGCTCCAGGAG 60.767 72.222 12.81 12.81 45.72 3.69
2923 3536 1.074395 CCTTACCTCCTCCCCCTCC 60.074 68.421 0.00 0.00 0.00 4.30
2951 3564 1.077716 ATCTTACCGGTGGCAAGCC 60.078 57.895 19.93 3.61 0.00 4.35
2952 3565 1.993369 GCATCTTACCGGTGGCAAGC 61.993 60.000 19.93 12.37 0.00 4.01
2953 3566 0.392998 AGCATCTTACCGGTGGCAAG 60.393 55.000 19.93 13.60 0.00 4.01
2954 3567 0.676466 CAGCATCTTACCGGTGGCAA 60.676 55.000 19.93 2.02 0.00 4.52
2955 3568 1.078497 CAGCATCTTACCGGTGGCA 60.078 57.895 19.93 0.00 0.00 4.92
2956 3569 1.819632 CCAGCATCTTACCGGTGGC 60.820 63.158 19.93 12.83 43.26 5.01
2964 3577 1.452651 GCAGCAGGCCAGCATCTTA 60.453 57.895 23.38 0.00 36.85 2.10
2965 3578 2.754658 GCAGCAGGCCAGCATCTT 60.755 61.111 23.38 0.00 36.85 2.40
2975 3588 1.146485 CTGAGGATCCAGCAGCAGG 59.854 63.158 15.82 0.00 0.00 4.85
2978 3591 0.250381 CCATCTGAGGATCCAGCAGC 60.250 60.000 22.96 5.88 34.28 5.25
2996 3609 2.691011 GTGTACTCCTCACATCCTCTCC 59.309 54.545 0.00 0.00 36.05 3.71
2998 3611 2.043115 TGGTGTACTCCTCACATCCTCT 59.957 50.000 14.75 0.00 37.52 3.69
3001 3614 1.207329 GGTGGTGTACTCCTCACATCC 59.793 57.143 14.75 4.86 37.52 3.51
3006 3619 2.457598 GAGATGGTGGTGTACTCCTCA 58.542 52.381 14.75 12.68 33.83 3.86
3013 3626 2.889617 CGGCGAGATGGTGGTGTA 59.110 61.111 0.00 0.00 0.00 2.90
3019 3632 4.457496 CACTGGCGGCGAGATGGT 62.457 66.667 19.15 0.00 0.00 3.55
3033 3646 3.067091 CTCCACCAGCAGCTCACT 58.933 61.111 0.00 0.00 0.00 3.41
3045 3658 1.613630 TCCCCCTCTCAAGCTCCAC 60.614 63.158 0.00 0.00 0.00 4.02
3048 3661 1.048160 CCTCTCCCCCTCTCAAGCTC 61.048 65.000 0.00 0.00 0.00 4.09
3052 3665 2.364317 CGCCTCTCCCCCTCTCAA 60.364 66.667 0.00 0.00 0.00 3.02
3094 3707 3.440173 GCTAGCAGCAACTCCAATAAACA 59.560 43.478 10.63 0.00 41.89 2.83
3100 3713 1.002134 GGGCTAGCAGCAACTCCAA 60.002 57.895 18.24 0.00 44.75 3.53
3106 3719 3.055719 GCAACGGGCTAGCAGCAA 61.056 61.111 18.24 0.00 44.75 3.91
3116 3729 1.299316 CAACTGCAACAGCAACGGG 60.299 57.895 0.00 0.00 37.91 5.28
3117 3730 0.179140 AACAACTGCAACAGCAACGG 60.179 50.000 0.00 0.00 37.91 4.44
3118 3731 0.915904 CAACAACTGCAACAGCAACG 59.084 50.000 0.00 0.00 37.91 4.10
3132 3745 0.249868 CCTGACCTCTCACGCAACAA 60.250 55.000 0.00 0.00 0.00 2.83
3138 3751 1.135915 CATTCCTCCTGACCTCTCACG 59.864 57.143 0.00 0.00 0.00 4.35
3147 3760 1.362584 TCCTGTCCTCATTCCTCCTGA 59.637 52.381 0.00 0.00 0.00 3.86
3148 3761 1.761784 CTCCTGTCCTCATTCCTCCTG 59.238 57.143 0.00 0.00 0.00 3.86
3207 3839 0.960286 GACCTAGACGGATGCCTACC 59.040 60.000 0.00 0.00 36.31 3.18
3210 3842 0.757188 CCTGACCTAGACGGATGCCT 60.757 60.000 0.00 0.00 36.31 4.75
3211 3843 0.755698 TCCTGACCTAGACGGATGCC 60.756 60.000 0.00 0.00 36.31 4.40
3214 3846 1.223501 TCCTCCTGACCTAGACGGAT 58.776 55.000 0.00 0.00 36.31 4.18
3245 3877 3.743534 TAATACCCCTGTGCGGCGC 62.744 63.158 27.44 27.44 0.00 6.53
3246 3878 1.594293 CTAATACCCCTGTGCGGCG 60.594 63.158 0.51 0.51 0.00 6.46
3247 3879 1.227853 CCTAATACCCCTGTGCGGC 60.228 63.158 0.00 0.00 0.00 6.53
3248 3880 1.056660 ATCCTAATACCCCTGTGCGG 58.943 55.000 0.00 0.00 0.00 5.69
3249 3881 2.353803 GCTATCCTAATACCCCTGTGCG 60.354 54.545 0.00 0.00 0.00 5.34
3250 3882 2.907042 AGCTATCCTAATACCCCTGTGC 59.093 50.000 0.00 0.00 0.00 4.57
3251 3883 4.712337 CCTAGCTATCCTAATACCCCTGTG 59.288 50.000 0.00 0.00 0.00 3.66
3262 3918 6.715718 GTGTATGTCTCAACCTAGCTATCCTA 59.284 42.308 0.00 0.00 0.00 2.94
3263 3919 5.536916 GTGTATGTCTCAACCTAGCTATCCT 59.463 44.000 0.00 0.00 0.00 3.24
3276 3932 2.028112 GCTCAACCCAGTGTATGTCTCA 60.028 50.000 0.00 0.00 0.00 3.27
3299 3955 3.331889 CCTCCCAGATACTTGCCCAATAT 59.668 47.826 0.00 0.00 0.00 1.28
3303 3959 0.253160 ACCTCCCAGATACTTGCCCA 60.253 55.000 0.00 0.00 0.00 5.36
3305 3961 2.303311 GGATACCTCCCAGATACTTGCC 59.697 54.545 0.00 0.00 35.28 4.52
3321 3977 0.899720 TTCCTGACACGTGGGGATAC 59.100 55.000 21.57 4.54 0.00 2.24
3327 3983 3.753272 AGATTTCAATTCCTGACACGTGG 59.247 43.478 21.57 1.14 32.21 4.94
3328 3984 5.362556 AAGATTTCAATTCCTGACACGTG 57.637 39.130 15.48 15.48 32.21 4.49
3329 3985 6.263168 AGAAAAGATTTCAATTCCTGACACGT 59.737 34.615 5.71 0.00 32.21 4.49
3330 3986 6.672147 AGAAAAGATTTCAATTCCTGACACG 58.328 36.000 5.71 0.00 32.21 4.49
3353 4011 3.853671 GCATCGGTGTTTCAAGCAATAAG 59.146 43.478 0.00 0.00 0.00 1.73
3363 4021 0.165944 CGGTCAAGCATCGGTGTTTC 59.834 55.000 0.00 0.00 0.00 2.78
3366 4024 0.821517 TATCGGTCAAGCATCGGTGT 59.178 50.000 0.00 0.00 0.00 4.16
3368 4026 0.821517 TGTATCGGTCAAGCATCGGT 59.178 50.000 0.00 0.00 0.00 4.69
3386 4044 1.467543 CCCTGATACGCGGTCGATATG 60.468 57.143 12.47 0.00 39.41 1.78
3387 4045 0.809385 CCCTGATACGCGGTCGATAT 59.191 55.000 12.47 0.00 39.41 1.63
3403 4061 7.924151 CTGTACCAGATACGGATTTCATCCCT 61.924 46.154 0.00 0.00 42.12 4.20
3407 4065 4.654262 ACCTGTACCAGATACGGATTTCAT 59.346 41.667 0.00 0.00 42.12 2.57
3412 4070 3.155501 GCTACCTGTACCAGATACGGAT 58.844 50.000 0.00 0.00 42.12 4.18
3413 4071 2.579873 GCTACCTGTACCAGATACGGA 58.420 52.381 0.00 0.00 42.12 4.69
3415 4073 1.266175 CGGCTACCTGTACCAGATACG 59.734 57.143 0.00 0.00 36.47 3.06
3416 4074 2.579873 TCGGCTACCTGTACCAGATAC 58.420 52.381 0.00 0.00 32.44 2.24
3417 4075 3.520691 ATCGGCTACCTGTACCAGATA 57.479 47.619 0.00 0.00 32.44 1.98
3421 4079 1.311859 CGTATCGGCTACCTGTACCA 58.688 55.000 0.00 0.00 0.00 3.25
3451 4109 1.185315 AACACCAATACATGCTGGGC 58.815 50.000 12.36 0.00 37.00 5.36
3488 4146 1.308069 CCATTTGGACCCTGACAGCG 61.308 60.000 0.00 0.00 37.39 5.18
3538 4197 9.471702 AAATCCATTACAAAATCACTCTCTCAT 57.528 29.630 0.00 0.00 0.00 2.90
3556 4243 8.912988 TCAGTTTCAGTTGAGTTAAAATCCATT 58.087 29.630 0.00 0.00 0.00 3.16
3572 4259 6.484288 TCCATGGTTAATGATCAGTTTCAGT 58.516 36.000 12.58 0.00 38.72 3.41
3573 4260 7.395190 TTCCATGGTTAATGATCAGTTTCAG 57.605 36.000 12.58 0.00 38.72 3.02
3574 4261 7.773489 TTTCCATGGTTAATGATCAGTTTCA 57.227 32.000 12.58 0.00 38.72 2.69
3584 4271 8.748412 TCCTTCTGTTATTTTCCATGGTTAATG 58.252 33.333 12.58 1.79 35.89 1.90
3625 4314 3.265221 AGATTCTTCCATCTGTCCTGCAA 59.735 43.478 0.00 0.00 31.88 4.08
3658 4353 3.697045 TGAAGAGTTCCGAAAGCCAAAAA 59.303 39.130 0.00 0.00 0.00 1.94
3669 4364 3.931578 AGACCAGAATTGAAGAGTTCCG 58.068 45.455 0.00 0.00 0.00 4.30
3718 4413 6.983474 TGTACTGGTGATACAATCATGTTG 57.017 37.500 0.00 0.00 42.04 3.33
3731 4426 9.325198 CAATAACTAGCATATTTGTACTGGTGA 57.675 33.333 0.00 0.00 0.00 4.02
3794 4489 8.940952 AGCTCAGTTAAAGAATCATACAAGTTC 58.059 33.333 0.00 0.00 0.00 3.01
3973 4668 7.029563 GCATAACAAAGAACCTATTGTCAAGG 58.970 38.462 0.00 0.00 38.75 3.61
4058 4753 7.255486 CCAAGTCATTATGAGATGAATGCACAT 60.255 37.037 0.00 0.00 37.75 3.21
4075 4770 3.237268 TGGTAAAGCCACCAAGTCATT 57.763 42.857 0.12 0.00 45.65 2.57
4076 4771 2.969821 TGGTAAAGCCACCAAGTCAT 57.030 45.000 0.12 0.00 45.65 3.06
4121 4816 3.495331 ACTGCCTCTCGATACTGATGAT 58.505 45.455 0.00 0.00 0.00 2.45
4205 4900 6.765989 CCGTACCATTTGAATATTCTTCCTCA 59.234 38.462 16.24 0.00 0.00 3.86
4228 4923 4.058721 TGGTGCTGCATATATATAGCCG 57.941 45.455 5.27 8.68 35.36 5.52
4261 4956 9.166173 TCGATGATGAATTAAAAGTCTGATTGT 57.834 29.630 0.00 0.00 0.00 2.71
4520 5220 4.050553 ACATGTTGTGTTTATGCAGCAAC 58.949 39.130 0.00 0.00 38.01 4.17
4546 5246 2.279741 GTCAGCAGATAAATCCGCACA 58.720 47.619 1.32 0.00 32.73 4.57
4550 5250 3.459232 TCTGGTCAGCAGATAAATCCG 57.541 47.619 1.28 0.00 0.00 4.18
4552 5252 6.709397 TGATCAATCTGGTCAGCAGATAAATC 59.291 38.462 19.65 21.62 38.34 2.17
4589 5289 1.181098 GCCTGGGTGACAACAATGCT 61.181 55.000 0.00 0.00 0.00 3.79
4592 5292 0.478072 TCTGCCTGGGTGACAACAAT 59.522 50.000 0.00 0.00 0.00 2.71
4722 5422 4.216042 TGCACACATTCTGGTTACATTCTG 59.784 41.667 0.00 0.00 0.00 3.02
4723 5423 4.397420 TGCACACATTCTGGTTACATTCT 58.603 39.130 0.00 0.00 0.00 2.40
4724 5424 4.764679 TGCACACATTCTGGTTACATTC 57.235 40.909 0.00 0.00 0.00 2.67
4779 5524 2.719426 AATCAGACAAAGCTTGCTGC 57.281 45.000 15.59 0.00 43.29 5.25
4780 5525 4.868067 AGAAAATCAGACAAAGCTTGCTG 58.132 39.130 14.68 14.68 36.67 4.41
4781 5526 5.068198 TCAAGAAAATCAGACAAAGCTTGCT 59.932 36.000 0.00 0.00 33.45 3.91
4782 5527 5.284079 TCAAGAAAATCAGACAAAGCTTGC 58.716 37.500 0.00 0.00 33.45 4.01
4783 5528 7.941795 AATCAAGAAAATCAGACAAAGCTTG 57.058 32.000 0.00 0.00 34.41 4.01
4784 5529 8.823818 CAAAATCAAGAAAATCAGACAAAGCTT 58.176 29.630 0.00 0.00 0.00 3.74
4785 5530 7.983484 ACAAAATCAAGAAAATCAGACAAAGCT 59.017 29.630 0.00 0.00 0.00 3.74
4808 5553 3.591527 AGGTGGGGTCATCAGAATAACAA 59.408 43.478 0.00 0.00 0.00 2.83
4997 5743 4.102113 GCCACAGTTTCTGGGCAT 57.898 55.556 17.64 0.00 42.85 4.40
5037 5783 1.948834 TGACGCCCATGCATAAATGAG 59.051 47.619 0.00 0.00 37.32 2.90
5041 5787 2.121291 TCTTGACGCCCATGCATAAA 57.879 45.000 0.00 0.00 37.32 1.40
5104 5850 2.083774 TGATCAACGCTCCATGGAAAC 58.916 47.619 17.00 10.09 0.00 2.78
5183 5942 2.614259 ACCTGAAGCTCTCTTCTCCAA 58.386 47.619 6.60 0.00 46.81 3.53
5236 5995 2.187958 TCAGGGATGTCGGTCAAGATT 58.812 47.619 0.00 0.00 0.00 2.40
5300 6059 2.431942 AATCGTGTGTCCGTCGCC 60.432 61.111 0.00 0.00 0.00 5.54
5307 6066 5.845985 TTGAAGAAGATCAATCGTGTGTC 57.154 39.130 0.00 0.00 34.50 3.67
5383 6142 3.788775 GCAAGAAGCAGCCAAGAAG 57.211 52.632 0.00 0.00 44.79 2.85
5410 6169 5.122396 GGCCATACTTGTTTAGACTGTGAAG 59.878 44.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.