Multiple sequence alignment - TraesCS6D01G379000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G379000 chr6D 100.000 3279 0 0 1 3279 460815360 460812082 0.000000e+00 6056.0
1 TraesCS6D01G379000 chr6D 83.493 521 41 15 2781 3279 441321746 441322243 8.350000e-121 444.0
2 TraesCS6D01G379000 chr6A 95.691 1880 81 0 592 2471 68885024 68886903 0.000000e+00 3024.0
3 TraesCS6D01G379000 chr6A 92.620 813 35 7 2470 3279 68888401 68889191 0.000000e+00 1146.0
4 TraesCS6D01G379000 chr6A 94.382 89 5 0 350 438 358572205 358572293 1.590000e-28 137.0
5 TraesCS6D01G379000 chr5B 91.710 1906 123 8 595 2473 692427110 692429007 0.000000e+00 2612.0
6 TraesCS6D01G379000 chr5B 90.102 394 29 6 2470 2862 692430539 692430923 1.360000e-138 503.0
7 TraesCS6D01G379000 chr5B 91.411 326 23 3 1368 1690 536796338 536796015 3.000000e-120 442.0
8 TraesCS6D01G379000 chr5B 90.226 133 13 0 2858 2990 692431849 692431981 1.210000e-39 174.0
9 TraesCS6D01G379000 chr5B 94.118 51 2 1 2579 2629 14356819 14356868 3.510000e-10 76.8
10 TraesCS6D01G379000 chr5B 100.000 32 0 0 2470 2501 547621500 547621469 3.530000e-05 60.2
11 TraesCS6D01G379000 chr6B 91.446 1929 108 13 591 2473 564056461 564054544 0.000000e+00 2595.0
12 TraesCS6D01G379000 chr6B 89.756 1064 76 13 1440 2473 620695266 620696326 0.000000e+00 1330.0
13 TraesCS6D01G379000 chr6B 95.289 467 19 2 2470 2936 564053041 564052578 0.000000e+00 737.0
14 TraesCS6D01G379000 chr6B 93.548 62 4 0 2569 2630 564053021 564052960 3.480000e-15 93.5
15 TraesCS6D01G379000 chr6B 94.000 50 1 1 2579 2628 650766009 650766056 1.260000e-09 75.0
16 TraesCS6D01G379000 chr2B 88.424 1961 136 33 587 2473 646599569 646601512 0.000000e+00 2279.0
17 TraesCS6D01G379000 chr2B 83.993 581 59 16 2704 3279 646642279 646642830 8.060000e-146 527.0
18 TraesCS6D01G379000 chr2B 92.784 97 7 0 341 437 793154570 793154474 1.230000e-29 141.0
19 TraesCS6D01G379000 chr2B 87.879 66 3 4 2569 2630 646642122 646642186 4.540000e-09 73.1
20 TraesCS6D01G379000 chr4D 91.445 1052 67 14 1440 2473 43370662 43371708 0.000000e+00 1423.0
21 TraesCS6D01G379000 chr4D 92.249 787 46 7 592 1368 440465454 440464673 0.000000e+00 1101.0
22 TraesCS6D01G379000 chr4D 84.690 516 42 8 2782 3279 346224228 346223732 6.360000e-132 481.0
23 TraesCS6D01G379000 chr4D 84.363 518 40 13 2782 3279 440461635 440461139 1.380000e-128 470.0
24 TraesCS6D01G379000 chr4D 84.200 519 40 10 2781 3279 489199953 489200449 1.780000e-127 466.0
25 TraesCS6D01G379000 chr3D 92.333 926 53 10 1564 2473 603109092 603108169 0.000000e+00 1301.0
26 TraesCS6D01G379000 chr3D 85.078 516 40 8 2782 3279 550280646 550280150 2.940000e-135 492.0
27 TraesCS6D01G379000 chr3D 91.000 100 7 2 336 434 6467102 6467004 2.050000e-27 134.0
28 TraesCS6D01G379000 chr3D 92.208 77 4 2 2545 2621 603107001 603106927 1.240000e-19 108.0
29 TraesCS6D01G379000 chr5D 91.379 928 59 10 1564 2473 369015655 369014731 0.000000e+00 1251.0
30 TraesCS6D01G379000 chr5D 92.122 787 46 8 592 1368 443521254 443522034 0.000000e+00 1096.0
31 TraesCS6D01G379000 chr5D 84.942 518 37 16 2782 3279 443525138 443525634 1.370000e-133 486.0
32 TraesCS6D01G379000 chr5D 84.526 517 42 18 2782 3279 369012873 369012376 8.230000e-131 477.0
33 TraesCS6D01G379000 chr5D 83.752 517 45 9 2782 3279 557818716 557819212 1.390000e-123 453.0
34 TraesCS6D01G379000 chr3B 97.023 739 19 2 1735 2473 85165159 85164424 0.000000e+00 1240.0
35 TraesCS6D01G379000 chr3B 85.495 455 41 17 2539 2990 813210788 813210356 4.990000e-123 451.0
36 TraesCS6D01G379000 chr3B 92.553 188 12 1 1505 1690 85165360 85165173 5.390000e-68 268.0
37 TraesCS6D01G379000 chr7A 91.368 892 59 9 1596 2473 110524848 110525735 0.000000e+00 1205.0
38 TraesCS6D01G379000 chr7A 81.498 654 68 20 2647 3279 134465344 134465965 3.800000e-134 488.0
39 TraesCS6D01G379000 chr7A 92.473 93 7 0 346 438 360969227 360969319 2.050000e-27 134.0
40 TraesCS6D01G379000 chr7D 89.978 918 73 13 1564 2473 530866375 530865469 0.000000e+00 1168.0
41 TraesCS6D01G379000 chr7D 86.188 1086 66 39 587 1593 530867461 530866381 0.000000e+00 1098.0
42 TraesCS6D01G379000 chr7D 88.080 948 72 21 592 1503 596123081 596122139 0.000000e+00 1086.0
43 TraesCS6D01G379000 chr7D 85.915 1065 82 32 592 1593 11642234 11643293 0.000000e+00 1074.0
44 TraesCS6D01G379000 chr7D 85.078 516 40 8 2782 3279 192453896 192453400 2.940000e-135 492.0
45 TraesCS6D01G379000 chr7D 84.200 519 40 10 2781 3279 89084989 89084493 1.780000e-127 466.0
46 TraesCS6D01G379000 chr1B 87.513 977 85 10 592 1537 148152747 148153717 0.000000e+00 1094.0
47 TraesCS6D01G379000 chr1B 93.538 325 18 2 1368 1690 229997717 229998040 6.360000e-132 481.0
48 TraesCS6D01G379000 chr1B 80.755 530 41 18 2790 3279 141729068 141728560 1.120000e-94 357.0
49 TraesCS6D01G379000 chr1D 91.784 779 60 4 592 1368 422072811 422073587 0.000000e+00 1081.0
50 TraesCS6D01G379000 chr1D 93.768 353 22 0 2782 3134 422098815 422099167 6.230000e-147 531.0
51 TraesCS6D01G379000 chr1D 95.402 87 4 0 350 436 457943176 457943262 4.410000e-29 139.0
52 TraesCS6D01G379000 chr3A 81.498 654 68 19 2647 3279 23139867 23139246 3.800000e-134 488.0
53 TraesCS6D01G379000 chr3A 95.506 89 4 0 350 438 638994440 638994352 3.410000e-30 143.0
54 TraesCS6D01G379000 chr2A 80.734 654 73 19 2647 3279 514767317 514767938 8.290000e-126 460.0
55 TraesCS6D01G379000 chr2D 86.732 407 35 7 2873 3279 585720904 585720517 5.020000e-118 435.0
56 TraesCS6D01G379000 chr4B 92.021 188 13 1 1505 1690 531106583 531106770 2.510000e-66 263.0
57 TraesCS6D01G379000 chr4B 76.599 594 70 36 2703 3279 661148766 661148225 2.510000e-66 263.0
58 TraesCS6D01G379000 chr4B 76.860 605 49 32 2703 3279 621759073 621758532 1.170000e-64 257.0
59 TraesCS6D01G379000 chr7B 94.444 90 4 1 347 435 742411978 742411889 1.590000e-28 137.0
60 TraesCS6D01G379000 chr7B 91.753 97 7 1 350 446 389007178 389007083 2.050000e-27 134.0
61 TraesCS6D01G379000 chr7B 100.000 32 0 0 2470 2501 66323495 66323526 3.530000e-05 60.2
62 TraesCS6D01G379000 chr1A 93.407 91 6 0 347 437 497890463 497890553 5.710000e-28 135.0
63 TraesCS6D01G379000 chrUn 100.000 32 0 0 2470 2501 112553476 112553445 3.530000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G379000 chr6D 460812082 460815360 3278 True 6056.000000 6056 100.000000 1 3279 1 chr6D.!!$R1 3278
1 TraesCS6D01G379000 chr6A 68885024 68889191 4167 False 2085.000000 3024 94.155500 592 3279 2 chr6A.!!$F2 2687
2 TraesCS6D01G379000 chr5B 692427110 692431981 4871 False 1096.333333 2612 90.679333 595 2990 3 chr5B.!!$F2 2395
3 TraesCS6D01G379000 chr6B 620695266 620696326 1060 False 1330.000000 1330 89.756000 1440 2473 1 chr6B.!!$F1 1033
4 TraesCS6D01G379000 chr6B 564052578 564056461 3883 True 1141.833333 2595 93.427667 591 2936 3 chr6B.!!$R1 2345
5 TraesCS6D01G379000 chr2B 646599569 646601512 1943 False 2279.000000 2279 88.424000 587 2473 1 chr2B.!!$F1 1886
6 TraesCS6D01G379000 chr2B 646642122 646642830 708 False 300.050000 527 85.936000 2569 3279 2 chr2B.!!$F2 710
7 TraesCS6D01G379000 chr4D 43370662 43371708 1046 False 1423.000000 1423 91.445000 1440 2473 1 chr4D.!!$F1 1033
8 TraesCS6D01G379000 chr4D 440461139 440465454 4315 True 785.500000 1101 88.306000 592 3279 2 chr4D.!!$R2 2687
9 TraesCS6D01G379000 chr3D 603106927 603109092 2165 True 704.500000 1301 92.270500 1564 2621 2 chr3D.!!$R3 1057
10 TraesCS6D01G379000 chr5D 369012376 369015655 3279 True 864.000000 1251 87.952500 1564 3279 2 chr5D.!!$R1 1715
11 TraesCS6D01G379000 chr5D 443521254 443525634 4380 False 791.000000 1096 88.532000 592 3279 2 chr5D.!!$F2 2687
12 TraesCS6D01G379000 chr3B 85164424 85165360 936 True 754.000000 1240 94.788000 1505 2473 2 chr3B.!!$R2 968
13 TraesCS6D01G379000 chr7A 110524848 110525735 887 False 1205.000000 1205 91.368000 1596 2473 1 chr7A.!!$F1 877
14 TraesCS6D01G379000 chr7A 134465344 134465965 621 False 488.000000 488 81.498000 2647 3279 1 chr7A.!!$F2 632
15 TraesCS6D01G379000 chr7D 530865469 530867461 1992 True 1133.000000 1168 88.083000 587 2473 2 chr7D.!!$R4 1886
16 TraesCS6D01G379000 chr7D 596122139 596123081 942 True 1086.000000 1086 88.080000 592 1503 1 chr7D.!!$R3 911
17 TraesCS6D01G379000 chr7D 11642234 11643293 1059 False 1074.000000 1074 85.915000 592 1593 1 chr7D.!!$F1 1001
18 TraesCS6D01G379000 chr1B 148152747 148153717 970 False 1094.000000 1094 87.513000 592 1537 1 chr1B.!!$F1 945
19 TraesCS6D01G379000 chr1B 141728560 141729068 508 True 357.000000 357 80.755000 2790 3279 1 chr1B.!!$R1 489
20 TraesCS6D01G379000 chr1D 422072811 422073587 776 False 1081.000000 1081 91.784000 592 1368 1 chr1D.!!$F1 776
21 TraesCS6D01G379000 chr3A 23139246 23139867 621 True 488.000000 488 81.498000 2647 3279 1 chr3A.!!$R1 632
22 TraesCS6D01G379000 chr2A 514767317 514767938 621 False 460.000000 460 80.734000 2647 3279 1 chr2A.!!$F1 632
23 TraesCS6D01G379000 chr4B 661148225 661148766 541 True 263.000000 263 76.599000 2703 3279 1 chr4B.!!$R2 576
24 TraesCS6D01G379000 chr4B 621758532 621759073 541 True 257.000000 257 76.860000 2703 3279 1 chr4B.!!$R1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.036732 TGATGTTGCTCCAGTCCACC 59.963 55.000 0.0 0.0 0.00 4.61 F
514 515 0.038166 TGTCTGCCAGGGATTTGGAC 59.962 55.000 0.0 0.0 40.87 4.02 F
937 959 0.178935 CCTCCTCATCCTCTCCCTCC 60.179 65.000 0.0 0.0 0.00 4.30 F
1908 2202 1.893137 GGTGGGCAAGTTAAAGAAGGG 59.107 52.381 0.0 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1168 1199 1.697432 CACACTGTCAGGGGTTTCCTA 59.303 52.381 7.11 0.0 46.12 2.94 R
1918 2212 3.118408 ACTGGCTGTAGTTGTTTGACAGA 60.118 43.478 5.47 0.0 42.65 3.41 R
2176 2470 3.185880 TGCTTAAGTAGGTCCCTGTCT 57.814 47.619 4.02 0.0 0.00 3.41 R
2937 6168 0.819259 GCCAGGTCTTCAACAGCACA 60.819 55.000 0.00 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.392445 TGTCTTAGTCGACTGAGTTCTAGC 59.608 45.833 29.82 17.09 35.00 3.42
28 29 4.632688 GTCTTAGTCGACTGAGTTCTAGCT 59.367 45.833 29.82 4.23 32.14 3.32
29 30 5.811613 GTCTTAGTCGACTGAGTTCTAGCTA 59.188 44.000 29.82 11.15 32.14 3.32
32 33 3.685756 AGTCGACTGAGTTCTAGCTACAC 59.314 47.826 19.30 0.00 0.00 2.90
33 34 3.008330 TCGACTGAGTTCTAGCTACACC 58.992 50.000 0.00 0.00 0.00 4.16
36 37 3.702045 GACTGAGTTCTAGCTACACCCAT 59.298 47.826 0.00 0.00 0.00 4.00
38 39 5.269991 ACTGAGTTCTAGCTACACCCATTA 58.730 41.667 0.00 0.00 0.00 1.90
39 40 5.361285 ACTGAGTTCTAGCTACACCCATTAG 59.639 44.000 0.00 0.00 0.00 1.73
40 41 4.649674 TGAGTTCTAGCTACACCCATTAGG 59.350 45.833 0.00 0.00 43.78 2.69
42 43 5.468658 AGTTCTAGCTACACCCATTAGGAT 58.531 41.667 0.00 0.00 39.89 3.24
43 44 5.305644 AGTTCTAGCTACACCCATTAGGATG 59.694 44.000 0.00 0.00 39.89 3.51
56 57 3.488423 GGATGGATGATCCCCGCT 58.512 61.111 9.36 0.00 44.79 5.52
57 58 2.683916 GGATGGATGATCCCCGCTA 58.316 57.895 9.36 0.00 44.79 4.26
58 59 0.539051 GGATGGATGATCCCCGCTAG 59.461 60.000 9.36 0.00 44.79 3.42
59 60 1.561643 GATGGATGATCCCCGCTAGA 58.438 55.000 9.36 0.00 35.03 2.43
60 61 1.902508 GATGGATGATCCCCGCTAGAA 59.097 52.381 9.36 0.00 35.03 2.10
61 62 1.048601 TGGATGATCCCCGCTAGAAC 58.951 55.000 9.36 0.00 35.03 3.01
62 63 0.321996 GGATGATCCCCGCTAGAACC 59.678 60.000 0.00 0.00 0.00 3.62
63 64 0.038159 GATGATCCCCGCTAGAACCG 60.038 60.000 0.00 0.00 0.00 4.44
64 65 0.469331 ATGATCCCCGCTAGAACCGA 60.469 55.000 0.00 0.00 0.00 4.69
65 66 0.469331 TGATCCCCGCTAGAACCGAT 60.469 55.000 0.00 0.00 0.00 4.18
66 67 0.038159 GATCCCCGCTAGAACCGATG 60.038 60.000 0.00 0.00 0.00 3.84
67 68 0.759436 ATCCCCGCTAGAACCGATGT 60.759 55.000 0.00 0.00 0.00 3.06
68 69 1.067582 CCCCGCTAGAACCGATGTC 59.932 63.158 0.00 0.00 0.00 3.06
69 70 1.392710 CCCCGCTAGAACCGATGTCT 61.393 60.000 0.00 0.00 0.00 3.41
70 71 0.460311 CCCGCTAGAACCGATGTCTT 59.540 55.000 0.00 0.00 0.00 3.01
71 72 1.134788 CCCGCTAGAACCGATGTCTTT 60.135 52.381 0.00 0.00 0.00 2.52
72 73 1.927174 CCGCTAGAACCGATGTCTTTG 59.073 52.381 0.00 0.00 0.00 2.77
73 74 2.607187 CGCTAGAACCGATGTCTTTGT 58.393 47.619 0.00 0.00 0.00 2.83
74 75 2.993899 CGCTAGAACCGATGTCTTTGTT 59.006 45.455 0.00 0.00 0.00 2.83
75 76 3.432252 CGCTAGAACCGATGTCTTTGTTT 59.568 43.478 0.00 0.00 0.00 2.83
76 77 4.084013 CGCTAGAACCGATGTCTTTGTTTT 60.084 41.667 0.00 0.00 0.00 2.43
77 78 5.147162 GCTAGAACCGATGTCTTTGTTTTG 58.853 41.667 0.00 0.00 0.00 2.44
78 79 3.964909 AGAACCGATGTCTTTGTTTTGC 58.035 40.909 0.00 0.00 0.00 3.68
79 80 2.793278 ACCGATGTCTTTGTTTTGCC 57.207 45.000 0.00 0.00 0.00 4.52
80 81 2.306847 ACCGATGTCTTTGTTTTGCCT 58.693 42.857 0.00 0.00 0.00 4.75
81 82 3.482436 ACCGATGTCTTTGTTTTGCCTA 58.518 40.909 0.00 0.00 0.00 3.93
82 83 3.502211 ACCGATGTCTTTGTTTTGCCTAG 59.498 43.478 0.00 0.00 0.00 3.02
83 84 3.502211 CCGATGTCTTTGTTTTGCCTAGT 59.498 43.478 0.00 0.00 0.00 2.57
84 85 4.023193 CCGATGTCTTTGTTTTGCCTAGTT 60.023 41.667 0.00 0.00 0.00 2.24
85 86 5.180492 CCGATGTCTTTGTTTTGCCTAGTTA 59.820 40.000 0.00 0.00 0.00 2.24
86 87 6.293735 CCGATGTCTTTGTTTTGCCTAGTTAA 60.294 38.462 0.00 0.00 0.00 2.01
87 88 6.577427 CGATGTCTTTGTTTTGCCTAGTTAAC 59.423 38.462 0.00 0.00 0.00 2.01
88 89 6.139048 TGTCTTTGTTTTGCCTAGTTAACC 57.861 37.500 0.88 0.00 0.00 2.85
89 90 5.889289 TGTCTTTGTTTTGCCTAGTTAACCT 59.111 36.000 0.88 0.00 0.00 3.50
90 91 6.183360 TGTCTTTGTTTTGCCTAGTTAACCTG 60.183 38.462 0.88 0.00 0.00 4.00
91 92 4.577834 TTGTTTTGCCTAGTTAACCTGC 57.422 40.909 0.88 3.38 0.00 4.85
92 93 3.556999 TGTTTTGCCTAGTTAACCTGCA 58.443 40.909 0.88 6.11 0.00 4.41
93 94 3.954904 TGTTTTGCCTAGTTAACCTGCAA 59.045 39.130 17.89 17.89 39.92 4.08
94 95 4.586841 TGTTTTGCCTAGTTAACCTGCAAT 59.413 37.500 20.76 0.00 41.12 3.56
95 96 5.161358 GTTTTGCCTAGTTAACCTGCAATC 58.839 41.667 20.76 15.26 41.12 2.67
96 97 4.301072 TTGCCTAGTTAACCTGCAATCT 57.699 40.909 17.89 0.00 37.04 2.40
97 98 3.609853 TGCCTAGTTAACCTGCAATCTG 58.390 45.455 10.74 0.00 0.00 2.90
98 99 2.356069 GCCTAGTTAACCTGCAATCTGC 59.644 50.000 0.88 0.00 45.29 4.26
99 100 2.945668 CCTAGTTAACCTGCAATCTGCC 59.054 50.000 0.88 0.00 44.23 4.85
100 101 1.839424 AGTTAACCTGCAATCTGCCC 58.161 50.000 0.88 0.00 44.23 5.36
101 102 0.451783 GTTAACCTGCAATCTGCCCG 59.548 55.000 0.00 0.00 44.23 6.13
102 103 0.037590 TTAACCTGCAATCTGCCCGT 59.962 50.000 0.00 0.00 44.23 5.28
103 104 0.392461 TAACCTGCAATCTGCCCGTC 60.392 55.000 0.00 0.00 44.23 4.79
104 105 2.046023 CCTGCAATCTGCCCGTCA 60.046 61.111 0.00 0.00 44.23 4.35
105 106 1.452651 CCTGCAATCTGCCCGTCAT 60.453 57.895 0.00 0.00 44.23 3.06
106 107 1.033746 CCTGCAATCTGCCCGTCATT 61.034 55.000 0.00 0.00 44.23 2.57
107 108 0.379669 CTGCAATCTGCCCGTCATTC 59.620 55.000 0.00 0.00 44.23 2.67
108 109 1.353103 GCAATCTGCCCGTCATTCG 59.647 57.895 0.00 0.00 37.42 3.34
109 110 1.353103 CAATCTGCCCGTCATTCGC 59.647 57.895 0.00 0.00 38.35 4.70
110 111 1.078497 AATCTGCCCGTCATTCGCA 60.078 52.632 0.00 0.00 38.35 5.10
111 112 0.676466 AATCTGCCCGTCATTCGCAA 60.676 50.000 0.00 0.00 38.35 4.85
112 113 0.676466 ATCTGCCCGTCATTCGCAAA 60.676 50.000 0.00 0.00 38.35 3.68
113 114 0.886938 TCTGCCCGTCATTCGCAAAA 60.887 50.000 0.00 0.00 38.35 2.44
114 115 0.039617 CTGCCCGTCATTCGCAAAAA 60.040 50.000 0.00 0.00 38.35 1.94
135 136 6.825944 AAAAGAAGAAGAAACTATCTGCCC 57.174 37.500 0.00 0.00 38.79 5.36
136 137 4.130286 AGAAGAAGAAACTATCTGCCCG 57.870 45.455 0.00 0.00 38.79 6.13
137 138 3.515901 AGAAGAAGAAACTATCTGCCCGT 59.484 43.478 0.00 0.00 38.79 5.28
138 139 4.710375 AGAAGAAGAAACTATCTGCCCGTA 59.290 41.667 0.00 0.00 38.79 4.02
139 140 5.187186 AGAAGAAGAAACTATCTGCCCGTAA 59.813 40.000 0.00 0.00 38.79 3.18
140 141 4.756502 AGAAGAAACTATCTGCCCGTAAC 58.243 43.478 0.00 0.00 38.79 2.50
141 142 3.538634 AGAAACTATCTGCCCGTAACC 57.461 47.619 0.00 0.00 36.88 2.85
142 143 2.835764 AGAAACTATCTGCCCGTAACCA 59.164 45.455 0.00 0.00 36.88 3.67
143 144 2.685850 AACTATCTGCCCGTAACCAC 57.314 50.000 0.00 0.00 0.00 4.16
144 145 1.563924 ACTATCTGCCCGTAACCACA 58.436 50.000 0.00 0.00 0.00 4.17
145 146 1.903860 ACTATCTGCCCGTAACCACAA 59.096 47.619 0.00 0.00 0.00 3.33
146 147 2.277084 CTATCTGCCCGTAACCACAAC 58.723 52.381 0.00 0.00 0.00 3.32
147 148 0.398696 ATCTGCCCGTAACCACAACA 59.601 50.000 0.00 0.00 0.00 3.33
148 149 0.533308 TCTGCCCGTAACCACAACAC 60.533 55.000 0.00 0.00 0.00 3.32
149 150 0.816018 CTGCCCGTAACCACAACACA 60.816 55.000 0.00 0.00 0.00 3.72
150 151 0.179015 TGCCCGTAACCACAACACAT 60.179 50.000 0.00 0.00 0.00 3.21
151 152 0.955905 GCCCGTAACCACAACACATT 59.044 50.000 0.00 0.00 0.00 2.71
152 153 2.152830 GCCCGTAACCACAACACATTA 58.847 47.619 0.00 0.00 0.00 1.90
153 154 2.553172 GCCCGTAACCACAACACATTAA 59.447 45.455 0.00 0.00 0.00 1.40
154 155 3.365565 GCCCGTAACCACAACACATTAAG 60.366 47.826 0.00 0.00 0.00 1.85
155 156 3.365565 CCCGTAACCACAACACATTAAGC 60.366 47.826 0.00 0.00 0.00 3.09
156 157 3.475242 CGTAACCACAACACATTAAGCG 58.525 45.455 0.00 0.00 0.00 4.68
157 158 3.184783 CGTAACCACAACACATTAAGCGA 59.815 43.478 0.00 0.00 0.00 4.93
158 159 4.318903 CGTAACCACAACACATTAAGCGAA 60.319 41.667 0.00 0.00 0.00 4.70
159 160 4.640789 AACCACAACACATTAAGCGAAA 57.359 36.364 0.00 0.00 0.00 3.46
160 161 4.640789 ACCACAACACATTAAGCGAAAA 57.359 36.364 0.00 0.00 0.00 2.29
161 162 4.606961 ACCACAACACATTAAGCGAAAAG 58.393 39.130 0.00 0.00 0.00 2.27
162 163 4.097286 ACCACAACACATTAAGCGAAAAGT 59.903 37.500 0.00 0.00 0.00 2.66
163 164 4.440758 CCACAACACATTAAGCGAAAAGTG 59.559 41.667 7.58 7.58 34.80 3.16
164 165 5.270083 CACAACACATTAAGCGAAAAGTGA 58.730 37.500 13.82 0.00 33.58 3.41
165 166 5.914635 CACAACACATTAAGCGAAAAGTGAT 59.085 36.000 13.82 2.56 33.58 3.06
166 167 5.914635 ACAACACATTAAGCGAAAAGTGATG 59.085 36.000 13.82 13.82 36.67 3.07
167 168 5.689383 ACACATTAAGCGAAAAGTGATGT 57.311 34.783 13.82 0.00 33.58 3.06
168 169 6.072112 ACACATTAAGCGAAAAGTGATGTT 57.928 33.333 13.82 0.00 33.58 2.71
169 170 5.914635 ACACATTAAGCGAAAAGTGATGTTG 59.085 36.000 13.82 0.00 33.58 3.33
170 171 4.917415 ACATTAAGCGAAAAGTGATGTTGC 59.083 37.500 0.00 0.00 0.00 4.17
171 172 4.829064 TTAAGCGAAAAGTGATGTTGCT 57.171 36.364 0.00 0.00 0.00 3.91
172 173 2.977405 AGCGAAAAGTGATGTTGCTC 57.023 45.000 0.00 0.00 0.00 4.26
173 174 1.537202 AGCGAAAAGTGATGTTGCTCC 59.463 47.619 0.00 0.00 0.00 4.70
174 175 1.266718 GCGAAAAGTGATGTTGCTCCA 59.733 47.619 0.00 0.00 0.00 3.86
175 176 2.666619 GCGAAAAGTGATGTTGCTCCAG 60.667 50.000 0.00 0.00 0.00 3.86
176 177 2.549754 CGAAAAGTGATGTTGCTCCAGT 59.450 45.455 0.00 0.00 0.00 4.00
177 178 3.364366 CGAAAAGTGATGTTGCTCCAGTC 60.364 47.826 0.00 0.00 0.00 3.51
178 179 2.191128 AAGTGATGTTGCTCCAGTCC 57.809 50.000 0.00 0.00 0.00 3.85
179 180 1.059098 AGTGATGTTGCTCCAGTCCA 58.941 50.000 0.00 0.00 0.00 4.02
180 181 1.160137 GTGATGTTGCTCCAGTCCAC 58.840 55.000 0.00 0.00 0.00 4.02
181 182 0.036732 TGATGTTGCTCCAGTCCACC 59.963 55.000 0.00 0.00 0.00 4.61
182 183 0.678048 GATGTTGCTCCAGTCCACCC 60.678 60.000 0.00 0.00 0.00 4.61
183 184 2.034221 GTTGCTCCAGTCCACCCC 59.966 66.667 0.00 0.00 0.00 4.95
184 185 2.449518 TTGCTCCAGTCCACCCCA 60.450 61.111 0.00 0.00 0.00 4.96
185 186 2.829384 TTGCTCCAGTCCACCCCAC 61.829 63.158 0.00 0.00 0.00 4.61
186 187 4.035102 GCTCCAGTCCACCCCACC 62.035 72.222 0.00 0.00 0.00 4.61
187 188 2.529136 CTCCAGTCCACCCCACCA 60.529 66.667 0.00 0.00 0.00 4.17
188 189 2.852075 TCCAGTCCACCCCACCAC 60.852 66.667 0.00 0.00 0.00 4.16
189 190 3.966543 CCAGTCCACCCCACCACC 61.967 72.222 0.00 0.00 0.00 4.61
190 191 2.854032 CAGTCCACCCCACCACCT 60.854 66.667 0.00 0.00 0.00 4.00
191 192 2.529389 AGTCCACCCCACCACCTC 60.529 66.667 0.00 0.00 0.00 3.85
192 193 2.529389 GTCCACCCCACCACCTCT 60.529 66.667 0.00 0.00 0.00 3.69
193 194 2.529136 TCCACCCCACCACCTCTG 60.529 66.667 0.00 0.00 0.00 3.35
194 195 2.529136 CCACCCCACCACCTCTGA 60.529 66.667 0.00 0.00 0.00 3.27
195 196 2.153401 CCACCCCACCACCTCTGAA 61.153 63.158 0.00 0.00 0.00 3.02
196 197 1.073199 CACCCCACCACCTCTGAAC 59.927 63.158 0.00 0.00 0.00 3.18
197 198 1.073706 ACCCCACCACCTCTGAACT 60.074 57.895 0.00 0.00 0.00 3.01
198 199 1.128188 ACCCCACCACCTCTGAACTC 61.128 60.000 0.00 0.00 0.00 3.01
199 200 1.127567 CCCCACCACCTCTGAACTCA 61.128 60.000 0.00 0.00 0.00 3.41
200 201 0.322975 CCCACCACCTCTGAACTCAG 59.677 60.000 0.00 0.00 45.08 3.35
201 202 0.321122 CCACCACCTCTGAACTCAGC 60.321 60.000 1.61 0.00 43.46 4.26
202 203 0.683973 CACCACCTCTGAACTCAGCT 59.316 55.000 1.61 0.00 43.46 4.24
203 204 0.972883 ACCACCTCTGAACTCAGCTC 59.027 55.000 1.61 0.00 43.46 4.09
204 205 0.108898 CCACCTCTGAACTCAGCTCG 60.109 60.000 1.61 0.00 43.46 5.03
205 206 0.108898 CACCTCTGAACTCAGCTCGG 60.109 60.000 1.61 5.22 43.46 4.63
206 207 1.153667 CCTCTGAACTCAGCTCGGC 60.154 63.158 1.61 0.00 43.46 5.54
207 208 1.588597 CTCTGAACTCAGCTCGGCA 59.411 57.895 1.61 0.00 43.46 5.69
208 209 0.735632 CTCTGAACTCAGCTCGGCAC 60.736 60.000 1.61 0.00 43.46 5.01
209 210 1.005748 CTGAACTCAGCTCGGCACA 60.006 57.895 0.00 0.00 37.15 4.57
210 211 1.005748 TGAACTCAGCTCGGCACAG 60.006 57.895 0.00 0.00 0.00 3.66
211 212 2.358003 AACTCAGCTCGGCACAGC 60.358 61.111 0.00 0.00 39.99 4.40
212 213 3.169155 AACTCAGCTCGGCACAGCA 62.169 57.895 8.69 0.00 42.40 4.41
213 214 2.814341 CTCAGCTCGGCACAGCAG 60.814 66.667 8.69 0.96 42.40 4.24
214 215 3.292500 CTCAGCTCGGCACAGCAGA 62.293 63.158 8.69 5.19 42.40 4.26
215 216 2.357881 CAGCTCGGCACAGCAGAA 60.358 61.111 8.69 0.00 42.40 3.02
216 217 2.358003 AGCTCGGCACAGCAGAAC 60.358 61.111 8.69 0.00 42.40 3.01
217 218 2.358003 GCTCGGCACAGCAGAACT 60.358 61.111 1.33 0.00 39.43 3.01
229 230 2.659428 AGCAGAACTGAATAATGGCCC 58.341 47.619 0.00 0.00 0.00 5.80
230 231 2.243221 AGCAGAACTGAATAATGGCCCT 59.757 45.455 0.00 0.00 0.00 5.19
231 232 2.360165 GCAGAACTGAATAATGGCCCTG 59.640 50.000 0.00 0.00 0.00 4.45
232 233 2.360165 CAGAACTGAATAATGGCCCTGC 59.640 50.000 0.00 0.00 0.00 4.85
252 253 1.735360 CCATGCAAATGGGGCTACG 59.265 57.895 0.00 0.00 38.04 3.51
253 254 1.066257 CATGCAAATGGGGCTACGC 59.934 57.895 0.00 0.00 0.00 4.42
263 264 3.590824 GGCTACGCCTGCATTGTT 58.409 55.556 0.00 0.00 46.69 2.83
264 265 1.429423 GGCTACGCCTGCATTGTTC 59.571 57.895 0.00 0.00 46.69 3.18
265 266 1.305219 GGCTACGCCTGCATTGTTCA 61.305 55.000 0.00 0.00 46.69 3.18
266 267 0.734889 GCTACGCCTGCATTGTTCAT 59.265 50.000 0.00 0.00 0.00 2.57
267 268 1.133025 GCTACGCCTGCATTGTTCATT 59.867 47.619 0.00 0.00 0.00 2.57
268 269 2.792542 GCTACGCCTGCATTGTTCATTC 60.793 50.000 0.00 0.00 0.00 2.67
269 270 0.168788 ACGCCTGCATTGTTCATTCG 59.831 50.000 0.00 0.00 0.00 3.34
270 271 0.168788 CGCCTGCATTGTTCATTCGT 59.831 50.000 0.00 0.00 0.00 3.85
271 272 1.396648 CGCCTGCATTGTTCATTCGTA 59.603 47.619 0.00 0.00 0.00 3.43
272 273 2.785679 GCCTGCATTGTTCATTCGTAC 58.214 47.619 0.00 0.00 0.00 3.67
273 274 2.420022 GCCTGCATTGTTCATTCGTACT 59.580 45.455 0.00 0.00 0.00 2.73
274 275 3.119849 GCCTGCATTGTTCATTCGTACTT 60.120 43.478 0.00 0.00 0.00 2.24
275 276 4.615912 GCCTGCATTGTTCATTCGTACTTT 60.616 41.667 0.00 0.00 0.00 2.66
276 277 5.088739 CCTGCATTGTTCATTCGTACTTTC 58.911 41.667 0.00 0.00 0.00 2.62
277 278 4.707563 TGCATTGTTCATTCGTACTTTCG 58.292 39.130 0.00 0.00 0.00 3.46
278 279 3.538392 GCATTGTTCATTCGTACTTTCGC 59.462 43.478 0.00 0.00 0.00 4.70
279 280 3.427516 TTGTTCATTCGTACTTTCGCG 57.572 42.857 0.00 0.00 0.00 5.87
280 281 2.396601 TGTTCATTCGTACTTTCGCGT 58.603 42.857 5.77 0.00 0.00 6.01
281 282 3.563508 TGTTCATTCGTACTTTCGCGTA 58.436 40.909 5.77 0.00 0.00 4.42
282 283 3.361644 TGTTCATTCGTACTTTCGCGTAC 59.638 43.478 5.77 0.00 37.10 3.67
283 284 2.518949 TCATTCGTACTTTCGCGTACC 58.481 47.619 5.77 0.00 37.13 3.34
284 285 1.585214 CATTCGTACTTTCGCGTACCC 59.415 52.381 5.77 0.00 37.13 3.69
285 286 0.881118 TTCGTACTTTCGCGTACCCT 59.119 50.000 5.77 0.00 37.13 4.34
286 287 0.447801 TCGTACTTTCGCGTACCCTC 59.552 55.000 5.77 0.00 37.13 4.30
287 288 0.168788 CGTACTTTCGCGTACCCTCA 59.831 55.000 5.77 0.00 37.13 3.86
288 289 1.622232 GTACTTTCGCGTACCCTCAC 58.378 55.000 5.77 0.00 34.97 3.51
289 290 0.527565 TACTTTCGCGTACCCTCACC 59.472 55.000 5.77 0.00 0.00 4.02
290 291 1.804326 CTTTCGCGTACCCTCACCG 60.804 63.158 5.77 0.00 0.00 4.94
291 292 3.285523 TTTCGCGTACCCTCACCGG 62.286 63.158 5.77 0.00 0.00 5.28
294 295 4.509737 GCGTACCCTCACCGGCTC 62.510 72.222 0.00 0.00 0.00 4.70
295 296 2.754658 CGTACCCTCACCGGCTCT 60.755 66.667 0.00 0.00 0.00 4.09
296 297 2.893398 GTACCCTCACCGGCTCTG 59.107 66.667 0.00 0.00 0.00 3.35
297 298 1.982938 GTACCCTCACCGGCTCTGT 60.983 63.158 0.00 0.00 0.00 3.41
298 299 1.681327 TACCCTCACCGGCTCTGTC 60.681 63.158 0.00 0.00 0.00 3.51
299 300 4.135153 CCCTCACCGGCTCTGTCG 62.135 72.222 0.00 0.00 0.00 4.35
300 301 3.374402 CCTCACCGGCTCTGTCGT 61.374 66.667 0.00 0.00 0.00 4.34
301 302 2.179517 CTCACCGGCTCTGTCGTC 59.820 66.667 0.00 0.00 0.00 4.20
302 303 2.282251 TCACCGGCTCTGTCGTCT 60.282 61.111 0.00 0.00 0.00 4.18
303 304 2.179517 CACCGGCTCTGTCGTCTC 59.820 66.667 0.00 0.00 0.00 3.36
304 305 3.063084 ACCGGCTCTGTCGTCTCC 61.063 66.667 0.00 0.00 0.00 3.71
305 306 3.827898 CCGGCTCTGTCGTCTCCC 61.828 72.222 0.00 0.00 0.00 4.30
306 307 3.062466 CGGCTCTGTCGTCTCCCA 61.062 66.667 0.00 0.00 0.00 4.37
307 308 2.574399 GGCTCTGTCGTCTCCCAC 59.426 66.667 0.00 0.00 0.00 4.61
308 309 1.979693 GGCTCTGTCGTCTCCCACT 60.980 63.158 0.00 0.00 0.00 4.00
309 310 1.509004 GCTCTGTCGTCTCCCACTC 59.491 63.158 0.00 0.00 0.00 3.51
310 311 1.244697 GCTCTGTCGTCTCCCACTCA 61.245 60.000 0.00 0.00 0.00 3.41
311 312 1.468985 CTCTGTCGTCTCCCACTCAT 58.531 55.000 0.00 0.00 0.00 2.90
312 313 1.403679 CTCTGTCGTCTCCCACTCATC 59.596 57.143 0.00 0.00 0.00 2.92
313 314 1.177401 CTGTCGTCTCCCACTCATCA 58.823 55.000 0.00 0.00 0.00 3.07
314 315 1.546029 CTGTCGTCTCCCACTCATCAA 59.454 52.381 0.00 0.00 0.00 2.57
315 316 1.967779 TGTCGTCTCCCACTCATCAAA 59.032 47.619 0.00 0.00 0.00 2.69
316 317 2.567169 TGTCGTCTCCCACTCATCAAAT 59.433 45.455 0.00 0.00 0.00 2.32
317 318 2.932614 GTCGTCTCCCACTCATCAAATG 59.067 50.000 0.00 0.00 0.00 2.32
318 319 2.093500 TCGTCTCCCACTCATCAAATGG 60.093 50.000 0.00 0.00 0.00 3.16
319 320 2.019984 GTCTCCCACTCATCAAATGGC 58.980 52.381 0.00 0.00 31.66 4.40
320 321 1.634973 TCTCCCACTCATCAAATGGCA 59.365 47.619 0.00 0.00 31.66 4.92
321 322 2.041485 TCTCCCACTCATCAAATGGCAA 59.959 45.455 0.00 0.00 31.66 4.52
322 323 2.165030 CTCCCACTCATCAAATGGCAAC 59.835 50.000 0.00 0.00 31.66 4.17
344 345 7.513371 AACACAAGGTTGACGGATTTATTAA 57.487 32.000 0.00 0.00 38.60 1.40
345 346 7.696992 ACACAAGGTTGACGGATTTATTAAT 57.303 32.000 0.00 0.00 0.00 1.40
346 347 8.117813 ACACAAGGTTGACGGATTTATTAATT 57.882 30.769 0.00 0.00 0.00 1.40
347 348 9.233649 ACACAAGGTTGACGGATTTATTAATTA 57.766 29.630 0.00 0.00 0.00 1.40
376 377 9.322773 ACTCCCTTCGTAAACTAATATAAAAGC 57.677 33.333 0.00 0.00 0.00 3.51
377 378 8.356533 TCCCTTCGTAAACTAATATAAAAGCG 57.643 34.615 0.00 0.00 0.00 4.68
378 379 7.981225 TCCCTTCGTAAACTAATATAAAAGCGT 59.019 33.333 0.00 0.00 0.00 5.07
379 380 8.606602 CCCTTCGTAAACTAATATAAAAGCGTT 58.393 33.333 0.00 0.00 0.00 4.84
380 381 9.977762 CCTTCGTAAACTAATATAAAAGCGTTT 57.022 29.630 2.53 2.53 0.00 3.60
438 439 9.819267 ATATTAGTTTACAGAGGAAGTAGTTGC 57.181 33.333 0.00 0.00 0.00 4.17
439 440 4.895961 AGTTTACAGAGGAAGTAGTTGCC 58.104 43.478 0.00 0.00 0.00 4.52
440 441 4.347000 AGTTTACAGAGGAAGTAGTTGCCA 59.653 41.667 0.00 0.00 0.00 4.92
441 442 4.537135 TTACAGAGGAAGTAGTTGCCAG 57.463 45.455 0.00 0.00 0.00 4.85
442 443 2.609747 ACAGAGGAAGTAGTTGCCAGA 58.390 47.619 0.00 0.00 0.00 3.86
443 444 2.300437 ACAGAGGAAGTAGTTGCCAGAC 59.700 50.000 0.00 0.00 0.00 3.51
444 445 2.564947 CAGAGGAAGTAGTTGCCAGACT 59.435 50.000 0.00 0.00 0.00 3.24
445 446 3.007398 CAGAGGAAGTAGTTGCCAGACTT 59.993 47.826 0.00 0.00 36.14 3.01
446 447 4.220821 CAGAGGAAGTAGTTGCCAGACTTA 59.779 45.833 0.00 0.00 33.61 2.24
447 448 4.464597 AGAGGAAGTAGTTGCCAGACTTAG 59.535 45.833 0.00 0.00 33.61 2.18
448 449 4.417437 AGGAAGTAGTTGCCAGACTTAGA 58.583 43.478 0.00 0.00 33.61 2.10
449 450 4.838986 AGGAAGTAGTTGCCAGACTTAGAA 59.161 41.667 0.00 0.00 33.61 2.10
450 451 5.485708 AGGAAGTAGTTGCCAGACTTAGAAT 59.514 40.000 0.00 0.00 33.61 2.40
451 452 5.813157 GGAAGTAGTTGCCAGACTTAGAATC 59.187 44.000 0.00 0.00 33.61 2.52
452 453 6.360370 AAGTAGTTGCCAGACTTAGAATCA 57.640 37.500 0.00 0.00 31.69 2.57
453 454 6.552445 AGTAGTTGCCAGACTTAGAATCAT 57.448 37.500 0.00 0.00 0.00 2.45
454 455 6.951971 AGTAGTTGCCAGACTTAGAATCATT 58.048 36.000 0.00 0.00 0.00 2.57
455 456 6.820656 AGTAGTTGCCAGACTTAGAATCATTG 59.179 38.462 0.00 0.00 0.00 2.82
456 457 4.397417 AGTTGCCAGACTTAGAATCATTGC 59.603 41.667 0.00 0.00 0.00 3.56
457 458 3.954200 TGCCAGACTTAGAATCATTGCA 58.046 40.909 0.00 0.00 0.00 4.08
458 459 3.691118 TGCCAGACTTAGAATCATTGCAC 59.309 43.478 0.00 0.00 0.00 4.57
459 460 3.944015 GCCAGACTTAGAATCATTGCACT 59.056 43.478 0.00 0.00 0.00 4.40
460 461 5.118990 GCCAGACTTAGAATCATTGCACTA 58.881 41.667 0.00 0.00 0.00 2.74
461 462 5.236047 GCCAGACTTAGAATCATTGCACTAG 59.764 44.000 0.00 0.00 0.00 2.57
462 463 5.757320 CCAGACTTAGAATCATTGCACTAGG 59.243 44.000 0.00 0.00 0.00 3.02
463 464 6.407412 CCAGACTTAGAATCATTGCACTAGGA 60.407 42.308 0.00 0.00 0.00 2.94
464 465 7.215789 CAGACTTAGAATCATTGCACTAGGAT 58.784 38.462 0.00 0.00 0.00 3.24
465 466 7.171167 CAGACTTAGAATCATTGCACTAGGATG 59.829 40.741 0.00 0.00 0.00 3.51
466 467 7.070447 AGACTTAGAATCATTGCACTAGGATGA 59.930 37.037 0.69 0.69 34.61 2.92
467 468 6.989169 ACTTAGAATCATTGCACTAGGATGAC 59.011 38.462 0.19 0.00 33.08 3.06
468 469 5.363562 AGAATCATTGCACTAGGATGACA 57.636 39.130 0.19 0.00 33.08 3.58
469 470 5.748402 AGAATCATTGCACTAGGATGACAA 58.252 37.500 0.19 0.00 33.08 3.18
470 471 6.182627 AGAATCATTGCACTAGGATGACAAA 58.817 36.000 0.19 0.00 33.08 2.83
471 472 6.832384 AGAATCATTGCACTAGGATGACAAAT 59.168 34.615 0.19 0.00 33.08 2.32
472 473 7.994911 AGAATCATTGCACTAGGATGACAAATA 59.005 33.333 0.19 0.00 33.08 1.40
473 474 7.741027 ATCATTGCACTAGGATGACAAATAG 57.259 36.000 0.19 0.00 33.08 1.73
474 475 6.653020 TCATTGCACTAGGATGACAAATAGT 58.347 36.000 0.00 0.00 0.00 2.12
475 476 6.539826 TCATTGCACTAGGATGACAAATAGTG 59.460 38.462 15.53 15.53 45.07 2.74
479 480 6.111768 CACTAGGATGACAAATAGTGCAAC 57.888 41.667 10.39 0.00 38.86 4.17
480 481 5.065218 CACTAGGATGACAAATAGTGCAACC 59.935 44.000 10.39 0.00 38.86 3.77
481 482 3.356290 AGGATGACAAATAGTGCAACCC 58.644 45.455 0.00 0.00 37.80 4.11
482 483 2.427095 GGATGACAAATAGTGCAACCCC 59.573 50.000 0.00 0.00 37.80 4.95
483 484 1.917872 TGACAAATAGTGCAACCCCC 58.082 50.000 0.00 0.00 37.80 5.40
484 485 1.427368 TGACAAATAGTGCAACCCCCT 59.573 47.619 0.00 0.00 37.80 4.79
485 486 1.818674 GACAAATAGTGCAACCCCCTG 59.181 52.381 0.00 0.00 37.80 4.45
486 487 1.146982 ACAAATAGTGCAACCCCCTGT 59.853 47.619 0.00 0.00 37.80 4.00
487 488 1.545582 CAAATAGTGCAACCCCCTGTG 59.454 52.381 0.00 0.00 37.80 3.66
488 489 0.777446 AATAGTGCAACCCCCTGTGT 59.223 50.000 0.00 0.00 37.80 3.72
489 490 0.777446 ATAGTGCAACCCCCTGTGTT 59.223 50.000 0.00 0.00 37.80 3.32
490 491 0.179004 TAGTGCAACCCCCTGTGTTG 60.179 55.000 0.00 0.00 44.60 3.33
493 494 3.447040 CAACCCCCTGTGTTGCTG 58.553 61.111 0.00 0.00 36.95 4.41
494 495 2.521708 AACCCCCTGTGTTGCTGC 60.522 61.111 0.00 0.00 0.00 5.25
495 496 3.073599 AACCCCCTGTGTTGCTGCT 62.074 57.895 0.00 0.00 0.00 4.24
496 497 2.987547 CCCCCTGTGTTGCTGCTG 60.988 66.667 0.00 0.00 0.00 4.41
497 498 2.203394 CCCCTGTGTTGCTGCTGT 60.203 61.111 0.00 0.00 0.00 4.40
498 499 2.263741 CCCCTGTGTTGCTGCTGTC 61.264 63.158 0.00 0.00 0.00 3.51
499 500 1.228063 CCCTGTGTTGCTGCTGTCT 60.228 57.895 0.00 0.00 0.00 3.41
500 501 1.512996 CCCTGTGTTGCTGCTGTCTG 61.513 60.000 0.00 0.00 0.00 3.51
501 502 1.281960 CTGTGTTGCTGCTGTCTGC 59.718 57.895 0.00 0.00 43.25 4.26
502 503 2.126417 CTGTGTTGCTGCTGTCTGCC 62.126 60.000 0.00 0.00 42.00 4.85
503 504 2.188829 GTGTTGCTGCTGTCTGCCA 61.189 57.895 0.00 0.00 42.00 4.92
504 505 1.895231 TGTTGCTGCTGTCTGCCAG 60.895 57.895 0.00 0.00 44.53 4.85
505 506 2.281970 TTGCTGCTGTCTGCCAGG 60.282 61.111 0.00 0.00 41.81 4.45
506 507 3.855503 TTGCTGCTGTCTGCCAGGG 62.856 63.158 0.00 0.00 41.81 4.45
507 508 4.025858 GCTGCTGTCTGCCAGGGA 62.026 66.667 0.00 0.00 41.81 4.20
508 509 2.996395 CTGCTGTCTGCCAGGGAT 59.004 61.111 0.00 0.00 41.81 3.85
509 510 1.302285 CTGCTGTCTGCCAGGGATT 59.698 57.895 0.00 0.00 41.81 3.01
510 511 0.323178 CTGCTGTCTGCCAGGGATTT 60.323 55.000 0.00 0.00 41.81 2.17
511 512 0.609957 TGCTGTCTGCCAGGGATTTG 60.610 55.000 0.00 0.00 41.81 2.32
512 513 1.318158 GCTGTCTGCCAGGGATTTGG 61.318 60.000 0.00 0.00 41.81 3.28
513 514 0.329261 CTGTCTGCCAGGGATTTGGA 59.671 55.000 0.00 0.00 40.87 3.53
514 515 0.038166 TGTCTGCCAGGGATTTGGAC 59.962 55.000 0.00 0.00 40.87 4.02
515 516 0.681243 GTCTGCCAGGGATTTGGACC 60.681 60.000 0.00 0.00 40.87 4.46
521 522 3.735725 GGGATTTGGACCCCGAGA 58.264 61.111 0.00 0.00 41.38 4.04
522 523 1.996086 GGGATTTGGACCCCGAGAA 59.004 57.895 0.00 0.00 41.38 2.87
523 524 0.330267 GGGATTTGGACCCCGAGAAA 59.670 55.000 0.00 0.00 41.38 2.52
524 525 1.460504 GGATTTGGACCCCGAGAAAC 58.539 55.000 0.00 0.00 0.00 2.78
525 526 1.271707 GGATTTGGACCCCGAGAAACA 60.272 52.381 0.00 0.00 0.00 2.83
526 527 2.510613 GATTTGGACCCCGAGAAACAA 58.489 47.619 0.00 0.00 0.00 2.83
527 528 2.438800 TTTGGACCCCGAGAAACAAA 57.561 45.000 0.00 0.00 0.00 2.83
528 529 2.438800 TTGGACCCCGAGAAACAAAA 57.561 45.000 0.00 0.00 0.00 2.44
529 530 2.668144 TGGACCCCGAGAAACAAAAT 57.332 45.000 0.00 0.00 0.00 1.82
530 531 3.791953 TGGACCCCGAGAAACAAAATA 57.208 42.857 0.00 0.00 0.00 1.40
531 532 4.101645 TGGACCCCGAGAAACAAAATAA 57.898 40.909 0.00 0.00 0.00 1.40
532 533 3.822167 TGGACCCCGAGAAACAAAATAAC 59.178 43.478 0.00 0.00 0.00 1.89
533 534 3.192001 GGACCCCGAGAAACAAAATAACC 59.808 47.826 0.00 0.00 0.00 2.85
534 535 4.077108 GACCCCGAGAAACAAAATAACCT 58.923 43.478 0.00 0.00 0.00 3.50
535 536 4.476297 ACCCCGAGAAACAAAATAACCTT 58.524 39.130 0.00 0.00 0.00 3.50
536 537 4.897076 ACCCCGAGAAACAAAATAACCTTT 59.103 37.500 0.00 0.00 0.00 3.11
537 538 5.221362 ACCCCGAGAAACAAAATAACCTTTG 60.221 40.000 0.00 0.00 41.24 2.77
538 539 5.010213 CCCCGAGAAACAAAATAACCTTTGA 59.990 40.000 3.23 0.00 38.35 2.69
539 540 6.149633 CCCGAGAAACAAAATAACCTTTGAG 58.850 40.000 3.23 0.00 38.35 3.02
540 541 6.016610 CCCGAGAAACAAAATAACCTTTGAGA 60.017 38.462 3.23 0.00 38.35 3.27
541 542 7.422399 CCGAGAAACAAAATAACCTTTGAGAA 58.578 34.615 3.23 0.00 38.35 2.87
542 543 8.082242 CCGAGAAACAAAATAACCTTTGAGAAT 58.918 33.333 3.23 0.00 38.35 2.40
543 544 9.118236 CGAGAAACAAAATAACCTTTGAGAATC 57.882 33.333 3.23 0.00 38.35 2.52
557 558 4.062677 TGAGAATCATGTGATGCGATCA 57.937 40.909 0.00 0.00 42.56 2.92
558 559 4.638304 TGAGAATCATGTGATGCGATCAT 58.362 39.130 0.00 0.00 42.56 2.45
559 560 4.451096 TGAGAATCATGTGATGCGATCATG 59.549 41.667 0.00 0.00 42.56 3.07
560 561 4.386711 AGAATCATGTGATGCGATCATGT 58.613 39.130 0.00 0.00 42.04 3.21
561 562 4.213482 AGAATCATGTGATGCGATCATGTG 59.787 41.667 0.00 8.20 42.04 3.21
562 563 1.600485 TCATGTGATGCGATCATGTGC 59.400 47.619 0.00 0.00 42.04 4.57
563 564 1.602377 CATGTGATGCGATCATGTGCT 59.398 47.619 8.37 0.00 42.04 4.40
564 565 1.011333 TGTGATGCGATCATGTGCTG 58.989 50.000 8.37 0.00 42.04 4.41
565 566 1.292992 GTGATGCGATCATGTGCTGA 58.707 50.000 8.37 0.00 42.04 4.26
566 567 1.260825 GTGATGCGATCATGTGCTGAG 59.739 52.381 8.37 0.00 42.04 3.35
567 568 1.134610 TGATGCGATCATGTGCTGAGT 60.135 47.619 8.37 0.00 37.28 3.41
568 569 1.526041 GATGCGATCATGTGCTGAGTC 59.474 52.381 8.37 0.00 37.28 3.36
569 570 0.533951 TGCGATCATGTGCTGAGTCT 59.466 50.000 8.37 0.00 37.28 3.24
570 571 1.750778 TGCGATCATGTGCTGAGTCTA 59.249 47.619 8.37 0.00 37.28 2.59
571 572 2.363359 TGCGATCATGTGCTGAGTCTAT 59.637 45.455 8.37 0.00 37.28 1.98
572 573 2.985809 GCGATCATGTGCTGAGTCTATC 59.014 50.000 0.00 0.00 37.28 2.08
573 574 3.305267 GCGATCATGTGCTGAGTCTATCT 60.305 47.826 0.00 0.00 37.28 1.98
574 575 4.795635 GCGATCATGTGCTGAGTCTATCTT 60.796 45.833 0.00 0.00 37.28 2.40
575 576 4.916831 CGATCATGTGCTGAGTCTATCTTC 59.083 45.833 0.00 0.00 37.28 2.87
576 577 5.506982 CGATCATGTGCTGAGTCTATCTTCA 60.507 44.000 0.00 0.00 37.28 3.02
577 578 5.866159 TCATGTGCTGAGTCTATCTTCAT 57.134 39.130 0.00 0.00 0.00 2.57
578 579 5.598769 TCATGTGCTGAGTCTATCTTCATG 58.401 41.667 0.00 0.00 33.74 3.07
579 580 5.128335 TCATGTGCTGAGTCTATCTTCATGT 59.872 40.000 0.00 0.00 34.02 3.21
580 581 5.411831 TGTGCTGAGTCTATCTTCATGTT 57.588 39.130 0.00 0.00 0.00 2.71
581 582 5.798132 TGTGCTGAGTCTATCTTCATGTTT 58.202 37.500 0.00 0.00 0.00 2.83
582 583 5.640783 TGTGCTGAGTCTATCTTCATGTTTG 59.359 40.000 0.00 0.00 0.00 2.93
583 584 5.641209 GTGCTGAGTCTATCTTCATGTTTGT 59.359 40.000 0.00 0.00 0.00 2.83
584 585 6.148480 GTGCTGAGTCTATCTTCATGTTTGTT 59.852 38.462 0.00 0.00 0.00 2.83
585 586 6.369890 TGCTGAGTCTATCTTCATGTTTGTTC 59.630 38.462 0.00 0.00 0.00 3.18
586 587 6.593382 GCTGAGTCTATCTTCATGTTTGTTCT 59.407 38.462 0.00 0.00 0.00 3.01
587 588 7.118971 GCTGAGTCTATCTTCATGTTTGTTCTT 59.881 37.037 0.00 0.00 0.00 2.52
588 589 8.908786 TGAGTCTATCTTCATGTTTGTTCTTT 57.091 30.769 0.00 0.00 0.00 2.52
589 590 9.342308 TGAGTCTATCTTCATGTTTGTTCTTTT 57.658 29.630 0.00 0.00 0.00 2.27
666 667 3.185797 ACTCTACGATTTTGTGCGGAAAC 59.814 43.478 0.00 0.00 0.00 2.78
937 959 0.178935 CCTCCTCATCCTCTCCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
1168 1199 6.626302 TGGTTTGATTCGAAGTTTCTTTTGT 58.374 32.000 3.35 0.00 0.00 2.83
1853 2147 4.256110 CATGTACCATGAGCAGAACTTGA 58.744 43.478 0.00 0.00 0.00 3.02
1908 2202 1.893137 GGTGGGCAAGTTAAAGAAGGG 59.107 52.381 0.00 0.00 0.00 3.95
1918 2212 7.210174 GCAAGTTAAAGAAGGGAATTGAGTTT 58.790 34.615 0.00 0.00 0.00 2.66
2038 2332 8.195436 CAGGCAATCAATGAACTAAATGAGAAT 58.805 33.333 0.00 0.00 0.00 2.40
2176 2470 1.289160 CCATGAAGGAAGTGGAGGGA 58.711 55.000 0.00 0.00 41.22 4.20
2227 2521 4.967036 AGAAGCTGGAGTATCTTATTGCC 58.033 43.478 0.00 0.00 33.73 4.52
2276 2570 6.402828 AGCAAAGATAAGCTGGAGAGGATCT 61.403 44.000 0.00 0.00 44.94 2.75
2325 2619 6.859508 GGTTGCTGTGTTGGTTAAGTAATTAC 59.140 38.462 7.57 7.57 0.00 1.89
2667 4943 2.878406 ACATTCAGGTAGCACAACACAC 59.122 45.455 0.00 0.00 0.00 3.82
2692 4968 6.986231 CACATAGTAGCATACAGTCCAAATCA 59.014 38.462 0.00 0.00 46.26 2.57
2694 4970 7.712639 ACATAGTAGCATACAGTCCAAATCAAG 59.287 37.037 0.00 0.00 46.26 3.02
2695 4971 6.054860 AGTAGCATACAGTCCAAATCAAGT 57.945 37.500 0.00 0.00 46.26 3.16
2697 4973 5.633830 AGCATACAGTCCAAATCAAGTTG 57.366 39.130 0.00 0.00 0.00 3.16
2698 4974 5.072741 AGCATACAGTCCAAATCAAGTTGT 58.927 37.500 2.11 0.00 0.00 3.32
2699 4975 6.237901 AGCATACAGTCCAAATCAAGTTGTA 58.762 36.000 2.11 0.00 0.00 2.41
2764 5041 3.496884 ACACAAACTTATAGGTGCACACG 59.503 43.478 20.43 0.00 34.69 4.49
2854 5131 2.304470 GAGGTTTCCTCTTCCTCTTGCT 59.696 50.000 8.38 0.00 46.41 3.91
2879 6086 5.491078 TGTTAATATCCCAGGTTCTCCAGTT 59.509 40.000 0.00 0.00 35.89 3.16
3081 6324 1.317613 TTGGTGTTGATGTGGTGCTC 58.682 50.000 0.00 0.00 0.00 4.26
3117 6363 0.618968 AGCACTAGAGGAACCCCTGG 60.619 60.000 0.00 0.00 44.53 4.45
3187 6437 4.247258 CAGTTAGTAAATGTACCGCACCA 58.753 43.478 2.15 0.00 0.00 4.17
3204 6454 8.384607 ACCGCACCAAAAATAATTAAACAAAT 57.615 26.923 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.844254 AGAACTCAGTCGACTAAGACAATAC 58.156 40.000 22.79 6.60 43.24 1.89
6 7 4.834534 AGCTAGAACTCAGTCGACTAAGA 58.165 43.478 22.79 13.60 0.00 2.10
7 8 5.581479 TGTAGCTAGAACTCAGTCGACTAAG 59.419 44.000 19.57 16.88 0.00 2.18
9 10 4.869297 GTGTAGCTAGAACTCAGTCGACTA 59.131 45.833 19.57 6.17 0.00 2.59
10 11 3.685756 GTGTAGCTAGAACTCAGTCGACT 59.314 47.826 13.58 13.58 0.00 4.18
11 12 3.181508 GGTGTAGCTAGAACTCAGTCGAC 60.182 52.174 7.70 7.70 0.00 4.20
12 13 3.008330 GGTGTAGCTAGAACTCAGTCGA 58.992 50.000 0.00 0.00 0.00 4.20
13 14 2.097791 GGGTGTAGCTAGAACTCAGTCG 59.902 54.545 5.83 0.00 0.00 4.18
14 15 3.090037 TGGGTGTAGCTAGAACTCAGTC 58.910 50.000 5.83 0.00 0.00 3.51
17 18 4.649674 CCTAATGGGTGTAGCTAGAACTCA 59.350 45.833 10.69 10.69 0.00 3.41
18 19 4.894114 TCCTAATGGGTGTAGCTAGAACTC 59.106 45.833 5.83 2.75 36.25 3.01
20 21 5.542779 CATCCTAATGGGTGTAGCTAGAAC 58.457 45.833 0.00 0.00 39.59 3.01
21 22 5.808366 CATCCTAATGGGTGTAGCTAGAA 57.192 43.478 0.00 0.00 39.59 2.10
40 41 1.561643 TCTAGCGGGGATCATCCATC 58.438 55.000 5.89 0.00 38.64 3.51
42 43 1.048601 GTTCTAGCGGGGATCATCCA 58.951 55.000 5.89 0.00 38.64 3.41
43 44 0.321996 GGTTCTAGCGGGGATCATCC 59.678 60.000 0.00 0.00 35.23 3.51
44 45 0.038159 CGGTTCTAGCGGGGATCATC 60.038 60.000 0.00 0.00 35.16 2.92
45 46 0.469331 TCGGTTCTAGCGGGGATCAT 60.469 55.000 0.00 0.00 39.89 2.45
46 47 0.469331 ATCGGTTCTAGCGGGGATCA 60.469 55.000 0.00 0.00 39.89 2.92
47 48 0.038159 CATCGGTTCTAGCGGGGATC 60.038 60.000 0.00 0.00 39.89 3.36
48 49 0.759436 ACATCGGTTCTAGCGGGGAT 60.759 55.000 0.00 0.00 39.89 3.85
49 50 1.380785 ACATCGGTTCTAGCGGGGA 60.381 57.895 0.00 0.00 39.89 4.81
50 51 1.067582 GACATCGGTTCTAGCGGGG 59.932 63.158 0.00 0.00 39.89 5.73
51 52 0.460311 AAGACATCGGTTCTAGCGGG 59.540 55.000 0.00 0.00 39.89 6.13
52 53 1.927174 CAAAGACATCGGTTCTAGCGG 59.073 52.381 0.00 0.00 39.89 5.52
53 54 2.607187 ACAAAGACATCGGTTCTAGCG 58.393 47.619 0.00 0.00 40.97 4.26
54 55 5.147162 CAAAACAAAGACATCGGTTCTAGC 58.853 41.667 0.00 0.00 0.00 3.42
55 56 5.147162 GCAAAACAAAGACATCGGTTCTAG 58.853 41.667 0.00 0.00 0.00 2.43
56 57 4.023536 GGCAAAACAAAGACATCGGTTCTA 60.024 41.667 0.00 0.00 0.00 2.10
57 58 3.243401 GGCAAAACAAAGACATCGGTTCT 60.243 43.478 0.00 0.00 0.00 3.01
58 59 3.049912 GGCAAAACAAAGACATCGGTTC 58.950 45.455 0.00 0.00 0.00 3.62
59 60 2.693074 AGGCAAAACAAAGACATCGGTT 59.307 40.909 0.00 0.00 0.00 4.44
60 61 2.306847 AGGCAAAACAAAGACATCGGT 58.693 42.857 0.00 0.00 0.00 4.69
61 62 3.502211 ACTAGGCAAAACAAAGACATCGG 59.498 43.478 0.00 0.00 0.00 4.18
62 63 4.749245 ACTAGGCAAAACAAAGACATCG 57.251 40.909 0.00 0.00 0.00 3.84
63 64 6.861572 GGTTAACTAGGCAAAACAAAGACATC 59.138 38.462 5.42 0.00 0.00 3.06
64 65 6.549736 AGGTTAACTAGGCAAAACAAAGACAT 59.450 34.615 5.42 0.00 0.00 3.06
65 66 5.889289 AGGTTAACTAGGCAAAACAAAGACA 59.111 36.000 5.42 0.00 0.00 3.41
66 67 6.206498 CAGGTTAACTAGGCAAAACAAAGAC 58.794 40.000 5.42 0.00 0.00 3.01
67 68 5.221165 GCAGGTTAACTAGGCAAAACAAAGA 60.221 40.000 5.42 0.00 0.00 2.52
68 69 4.982295 GCAGGTTAACTAGGCAAAACAAAG 59.018 41.667 5.42 0.00 0.00 2.77
69 70 4.402793 TGCAGGTTAACTAGGCAAAACAAA 59.597 37.500 14.05 0.00 0.00 2.83
70 71 3.954904 TGCAGGTTAACTAGGCAAAACAA 59.045 39.130 14.05 0.00 0.00 2.83
71 72 3.556999 TGCAGGTTAACTAGGCAAAACA 58.443 40.909 14.05 0.00 0.00 2.83
72 73 4.577834 TTGCAGGTTAACTAGGCAAAAC 57.422 40.909 21.21 0.00 41.05 2.43
73 74 5.048083 CAGATTGCAGGTTAACTAGGCAAAA 60.048 40.000 24.63 12.02 46.15 2.44
74 75 4.458989 CAGATTGCAGGTTAACTAGGCAAA 59.541 41.667 24.63 14.59 46.15 3.68
75 76 4.009675 CAGATTGCAGGTTAACTAGGCAA 58.990 43.478 23.74 23.74 46.95 4.52
76 77 3.609853 CAGATTGCAGGTTAACTAGGCA 58.390 45.455 5.42 9.99 0.00 4.75
77 78 2.356069 GCAGATTGCAGGTTAACTAGGC 59.644 50.000 5.42 7.54 44.26 3.93
90 91 1.353103 CGAATGACGGGCAGATTGC 59.647 57.895 0.00 0.00 44.08 3.56
91 92 1.353103 GCGAATGACGGGCAGATTG 59.647 57.895 0.00 0.00 42.83 2.67
92 93 0.676466 TTGCGAATGACGGGCAGATT 60.676 50.000 0.00 0.00 42.83 2.40
93 94 0.676466 TTTGCGAATGACGGGCAGAT 60.676 50.000 0.00 0.00 42.83 2.90
94 95 0.886938 TTTTGCGAATGACGGGCAGA 60.887 50.000 0.00 0.00 42.83 4.26
95 96 0.039617 TTTTTGCGAATGACGGGCAG 60.040 50.000 0.00 0.00 42.83 4.85
96 97 2.033793 TTTTTGCGAATGACGGGCA 58.966 47.368 0.00 0.00 42.83 5.36
97 98 4.955089 TTTTTGCGAATGACGGGC 57.045 50.000 0.00 0.00 42.83 6.13
111 112 6.072452 CGGGCAGATAGTTTCTTCTTCTTTTT 60.072 38.462 0.00 0.00 29.93 1.94
112 113 5.412904 CGGGCAGATAGTTTCTTCTTCTTTT 59.587 40.000 0.00 0.00 29.93 2.27
113 114 4.938226 CGGGCAGATAGTTTCTTCTTCTTT 59.062 41.667 0.00 0.00 29.93 2.52
114 115 4.020128 ACGGGCAGATAGTTTCTTCTTCTT 60.020 41.667 0.00 0.00 29.93 2.52
115 116 3.515901 ACGGGCAGATAGTTTCTTCTTCT 59.484 43.478 0.00 0.00 29.93 2.85
116 117 3.863041 ACGGGCAGATAGTTTCTTCTTC 58.137 45.455 0.00 0.00 29.93 2.87
117 118 3.983044 ACGGGCAGATAGTTTCTTCTT 57.017 42.857 0.00 0.00 29.93 2.52
118 119 4.382793 GGTTACGGGCAGATAGTTTCTTCT 60.383 45.833 0.00 0.00 29.93 2.85
119 120 3.869832 GGTTACGGGCAGATAGTTTCTTC 59.130 47.826 0.00 0.00 29.93 2.87
120 121 3.262405 TGGTTACGGGCAGATAGTTTCTT 59.738 43.478 0.00 0.00 29.93 2.52
121 122 2.835764 TGGTTACGGGCAGATAGTTTCT 59.164 45.455 0.00 0.00 33.90 2.52
122 123 2.934553 GTGGTTACGGGCAGATAGTTTC 59.065 50.000 0.00 0.00 0.00 2.78
123 124 2.303600 TGTGGTTACGGGCAGATAGTTT 59.696 45.455 0.00 0.00 0.00 2.66
124 125 1.903860 TGTGGTTACGGGCAGATAGTT 59.096 47.619 0.00 0.00 0.00 2.24
125 126 1.563924 TGTGGTTACGGGCAGATAGT 58.436 50.000 0.00 0.00 0.00 2.12
126 127 2.277084 GTTGTGGTTACGGGCAGATAG 58.723 52.381 0.00 0.00 0.00 2.08
127 128 1.624312 TGTTGTGGTTACGGGCAGATA 59.376 47.619 0.00 0.00 0.00 1.98
128 129 0.398696 TGTTGTGGTTACGGGCAGAT 59.601 50.000 0.00 0.00 0.00 2.90
129 130 0.533308 GTGTTGTGGTTACGGGCAGA 60.533 55.000 0.00 0.00 0.00 4.26
130 131 0.816018 TGTGTTGTGGTTACGGGCAG 60.816 55.000 0.00 0.00 0.00 4.85
131 132 0.179015 ATGTGTTGTGGTTACGGGCA 60.179 50.000 0.00 0.00 0.00 5.36
132 133 0.955905 AATGTGTTGTGGTTACGGGC 59.044 50.000 0.00 0.00 0.00 6.13
133 134 3.365565 GCTTAATGTGTTGTGGTTACGGG 60.366 47.826 0.00 0.00 0.00 5.28
134 135 3.665848 CGCTTAATGTGTTGTGGTTACGG 60.666 47.826 0.00 0.00 0.00 4.02
135 136 3.184783 TCGCTTAATGTGTTGTGGTTACG 59.815 43.478 0.00 0.00 0.00 3.18
136 137 4.735662 TCGCTTAATGTGTTGTGGTTAC 57.264 40.909 0.00 0.00 0.00 2.50
137 138 5.752892 TTTCGCTTAATGTGTTGTGGTTA 57.247 34.783 0.00 0.00 0.00 2.85
138 139 4.640789 TTTCGCTTAATGTGTTGTGGTT 57.359 36.364 0.00 0.00 0.00 3.67
139 140 4.097286 ACTTTTCGCTTAATGTGTTGTGGT 59.903 37.500 0.00 0.00 0.00 4.16
140 141 4.440758 CACTTTTCGCTTAATGTGTTGTGG 59.559 41.667 0.00 0.00 31.90 4.17
141 142 5.270083 TCACTTTTCGCTTAATGTGTTGTG 58.730 37.500 11.04 0.00 35.69 3.33
142 143 5.493133 TCACTTTTCGCTTAATGTGTTGT 57.507 34.783 11.04 0.00 35.69 3.32
143 144 5.914635 ACATCACTTTTCGCTTAATGTGTTG 59.085 36.000 15.43 15.43 38.05 3.33
144 145 6.072112 ACATCACTTTTCGCTTAATGTGTT 57.928 33.333 11.04 3.93 35.69 3.32
145 146 5.689383 ACATCACTTTTCGCTTAATGTGT 57.311 34.783 11.04 0.00 35.69 3.72
146 147 5.164158 GCAACATCACTTTTCGCTTAATGTG 60.164 40.000 7.12 7.12 35.59 3.21
147 148 4.917415 GCAACATCACTTTTCGCTTAATGT 59.083 37.500 0.00 0.00 0.00 2.71
148 149 5.156355 AGCAACATCACTTTTCGCTTAATG 58.844 37.500 0.00 0.00 0.00 1.90
149 150 5.376854 AGCAACATCACTTTTCGCTTAAT 57.623 34.783 0.00 0.00 0.00 1.40
150 151 4.320202 GGAGCAACATCACTTTTCGCTTAA 60.320 41.667 0.00 0.00 0.00 1.85
151 152 3.188460 GGAGCAACATCACTTTTCGCTTA 59.812 43.478 0.00 0.00 0.00 3.09
152 153 2.030805 GGAGCAACATCACTTTTCGCTT 60.031 45.455 0.00 0.00 0.00 4.68
153 154 1.537202 GGAGCAACATCACTTTTCGCT 59.463 47.619 0.00 0.00 0.00 4.93
154 155 1.266718 TGGAGCAACATCACTTTTCGC 59.733 47.619 0.00 0.00 0.00 4.70
155 156 2.549754 ACTGGAGCAACATCACTTTTCG 59.450 45.455 0.00 0.00 0.00 3.46
156 157 3.057946 GGACTGGAGCAACATCACTTTTC 60.058 47.826 0.00 0.00 0.00 2.29
157 158 2.887152 GGACTGGAGCAACATCACTTTT 59.113 45.455 0.00 0.00 0.00 2.27
158 159 2.158623 TGGACTGGAGCAACATCACTTT 60.159 45.455 0.00 0.00 0.00 2.66
159 160 1.421268 TGGACTGGAGCAACATCACTT 59.579 47.619 0.00 0.00 0.00 3.16
160 161 1.059098 TGGACTGGAGCAACATCACT 58.941 50.000 0.00 0.00 0.00 3.41
161 162 1.160137 GTGGACTGGAGCAACATCAC 58.840 55.000 0.00 0.00 0.00 3.06
162 163 0.036732 GGTGGACTGGAGCAACATCA 59.963 55.000 0.00 0.00 0.00 3.07
163 164 0.678048 GGGTGGACTGGAGCAACATC 60.678 60.000 0.00 0.00 0.00 3.06
164 165 1.380302 GGGTGGACTGGAGCAACAT 59.620 57.895 0.00 0.00 0.00 2.71
165 166 2.829384 GGGGTGGACTGGAGCAACA 61.829 63.158 0.00 0.00 0.00 3.33
166 167 2.034221 GGGGTGGACTGGAGCAAC 59.966 66.667 0.00 0.00 0.00 4.17
167 168 2.449518 TGGGGTGGACTGGAGCAA 60.450 61.111 0.00 0.00 0.00 3.91
168 169 3.249189 GTGGGGTGGACTGGAGCA 61.249 66.667 0.00 0.00 0.00 4.26
169 170 4.035102 GGTGGGGTGGACTGGAGC 62.035 72.222 0.00 0.00 0.00 4.70
170 171 2.529136 TGGTGGGGTGGACTGGAG 60.529 66.667 0.00 0.00 0.00 3.86
171 172 2.852075 GTGGTGGGGTGGACTGGA 60.852 66.667 0.00 0.00 0.00 3.86
172 173 3.966543 GGTGGTGGGGTGGACTGG 61.967 72.222 0.00 0.00 0.00 4.00
173 174 2.854032 AGGTGGTGGGGTGGACTG 60.854 66.667 0.00 0.00 0.00 3.51
174 175 2.529389 GAGGTGGTGGGGTGGACT 60.529 66.667 0.00 0.00 0.00 3.85
175 176 2.529389 AGAGGTGGTGGGGTGGAC 60.529 66.667 0.00 0.00 0.00 4.02
176 177 2.529136 CAGAGGTGGTGGGGTGGA 60.529 66.667 0.00 0.00 0.00 4.02
177 178 2.153401 TTCAGAGGTGGTGGGGTGG 61.153 63.158 0.00 0.00 0.00 4.61
178 179 1.073199 GTTCAGAGGTGGTGGGGTG 59.927 63.158 0.00 0.00 0.00 4.61
179 180 1.073706 AGTTCAGAGGTGGTGGGGT 60.074 57.895 0.00 0.00 0.00 4.95
180 181 1.127567 TGAGTTCAGAGGTGGTGGGG 61.128 60.000 0.00 0.00 0.00 4.96
181 182 0.322975 CTGAGTTCAGAGGTGGTGGG 59.677 60.000 2.97 0.00 46.59 4.61
182 183 0.321122 GCTGAGTTCAGAGGTGGTGG 60.321 60.000 13.13 0.00 46.59 4.61
183 184 0.683973 AGCTGAGTTCAGAGGTGGTG 59.316 55.000 13.13 0.00 46.59 4.17
184 185 0.972883 GAGCTGAGTTCAGAGGTGGT 59.027 55.000 13.13 0.00 46.59 4.16
185 186 0.108898 CGAGCTGAGTTCAGAGGTGG 60.109 60.000 13.13 0.00 46.59 4.61
186 187 0.108898 CCGAGCTGAGTTCAGAGGTG 60.109 60.000 13.13 0.00 46.59 4.00
187 188 1.882989 GCCGAGCTGAGTTCAGAGGT 61.883 60.000 13.13 0.00 46.59 3.85
188 189 1.153667 GCCGAGCTGAGTTCAGAGG 60.154 63.158 13.13 12.29 46.59 3.69
189 190 0.735632 GTGCCGAGCTGAGTTCAGAG 60.736 60.000 13.13 3.57 46.59 3.35
190 191 1.290324 GTGCCGAGCTGAGTTCAGA 59.710 57.895 13.13 0.00 46.59 3.27
191 192 1.005748 TGTGCCGAGCTGAGTTCAG 60.006 57.895 4.77 4.77 46.40 3.02
192 193 1.005748 CTGTGCCGAGCTGAGTTCA 60.006 57.895 0.00 0.00 0.00 3.18
193 194 2.386660 GCTGTGCCGAGCTGAGTTC 61.387 63.158 0.00 0.00 35.95 3.01
194 195 2.358003 GCTGTGCCGAGCTGAGTT 60.358 61.111 0.00 0.00 35.95 3.01
195 196 3.586461 CTGCTGTGCCGAGCTGAGT 62.586 63.158 0.00 0.00 39.58 3.41
196 197 2.776670 TTCTGCTGTGCCGAGCTGAG 62.777 60.000 11.71 1.01 44.66 3.35
197 198 2.871253 TTCTGCTGTGCCGAGCTGA 61.871 57.895 8.90 8.90 43.01 4.26
198 199 2.357881 TTCTGCTGTGCCGAGCTG 60.358 61.111 0.00 5.34 39.90 4.24
199 200 2.358003 GTTCTGCTGTGCCGAGCT 60.358 61.111 5.72 0.00 39.90 4.09
200 201 2.358003 AGTTCTGCTGTGCCGAGC 60.358 61.111 0.00 0.00 39.62 5.03
201 202 0.601046 TTCAGTTCTGCTGTGCCGAG 60.601 55.000 0.00 0.00 45.23 4.63
202 203 0.035317 ATTCAGTTCTGCTGTGCCGA 59.965 50.000 0.00 0.00 45.23 5.54
203 204 1.725641 TATTCAGTTCTGCTGTGCCG 58.274 50.000 0.00 0.00 45.23 5.69
204 205 3.181493 CCATTATTCAGTTCTGCTGTGCC 60.181 47.826 0.00 0.00 45.23 5.01
205 206 3.733077 GCCATTATTCAGTTCTGCTGTGC 60.733 47.826 0.00 0.00 45.23 4.57
206 207 3.181493 GGCCATTATTCAGTTCTGCTGTG 60.181 47.826 0.00 0.00 45.23 3.66
207 208 3.019564 GGCCATTATTCAGTTCTGCTGT 58.980 45.455 0.00 0.00 45.23 4.40
208 209 2.360165 GGGCCATTATTCAGTTCTGCTG 59.640 50.000 4.39 0.00 46.34 4.41
209 210 2.243221 AGGGCCATTATTCAGTTCTGCT 59.757 45.455 6.18 0.00 0.00 4.24
210 211 2.360165 CAGGGCCATTATTCAGTTCTGC 59.640 50.000 6.18 0.00 0.00 4.26
211 212 2.360165 GCAGGGCCATTATTCAGTTCTG 59.640 50.000 6.18 0.00 0.00 3.02
212 213 2.659428 GCAGGGCCATTATTCAGTTCT 58.341 47.619 6.18 0.00 0.00 3.01
248 249 2.537529 CGAATGAACAATGCAGGCGTAG 60.538 50.000 0.00 0.00 0.00 3.51
249 250 1.396648 CGAATGAACAATGCAGGCGTA 59.603 47.619 0.00 0.00 0.00 4.42
250 251 0.168788 CGAATGAACAATGCAGGCGT 59.831 50.000 0.00 0.00 0.00 5.68
251 252 0.168788 ACGAATGAACAATGCAGGCG 59.831 50.000 0.00 0.00 0.00 5.52
252 253 2.420022 AGTACGAATGAACAATGCAGGC 59.580 45.455 0.00 0.00 0.00 4.85
253 254 4.685169 AAGTACGAATGAACAATGCAGG 57.315 40.909 0.00 0.00 0.00 4.85
254 255 4.783036 CGAAAGTACGAATGAACAATGCAG 59.217 41.667 0.00 0.00 35.09 4.41
255 256 4.707563 CGAAAGTACGAATGAACAATGCA 58.292 39.130 0.00 0.00 35.09 3.96
256 257 3.538392 GCGAAAGTACGAATGAACAATGC 59.462 43.478 0.00 0.00 35.09 3.56
257 258 3.773549 CGCGAAAGTACGAATGAACAATG 59.226 43.478 0.00 0.00 35.09 2.82
258 259 3.430895 ACGCGAAAGTACGAATGAACAAT 59.569 39.130 15.93 0.00 35.09 2.71
259 260 2.796031 ACGCGAAAGTACGAATGAACAA 59.204 40.909 15.93 0.00 35.09 2.83
260 261 2.396601 ACGCGAAAGTACGAATGAACA 58.603 42.857 15.93 0.00 35.09 3.18
261 262 3.241458 GGTACGCGAAAGTACGAATGAAC 60.241 47.826 15.93 0.00 45.76 3.18
262 263 2.916716 GGTACGCGAAAGTACGAATGAA 59.083 45.455 15.93 0.00 45.76 2.57
263 264 2.518949 GGTACGCGAAAGTACGAATGA 58.481 47.619 15.93 0.00 45.76 2.57
264 265 1.585214 GGGTACGCGAAAGTACGAATG 59.415 52.381 15.93 0.00 45.76 2.67
265 266 1.474077 AGGGTACGCGAAAGTACGAAT 59.526 47.619 15.93 0.00 45.76 3.34
266 267 0.881118 AGGGTACGCGAAAGTACGAA 59.119 50.000 15.93 0.00 45.76 3.85
267 268 0.447801 GAGGGTACGCGAAAGTACGA 59.552 55.000 15.93 0.00 45.76 3.43
268 269 0.168788 TGAGGGTACGCGAAAGTACG 59.831 55.000 15.93 0.00 45.76 3.67
269 270 1.622232 GTGAGGGTACGCGAAAGTAC 58.378 55.000 15.93 4.26 44.50 2.73
270 271 0.527565 GGTGAGGGTACGCGAAAGTA 59.472 55.000 15.93 0.00 0.00 2.24
271 272 1.291272 GGTGAGGGTACGCGAAAGT 59.709 57.895 15.93 0.00 0.00 2.66
272 273 1.804326 CGGTGAGGGTACGCGAAAG 60.804 63.158 15.93 0.00 0.00 2.62
273 274 2.259204 CGGTGAGGGTACGCGAAA 59.741 61.111 15.93 0.00 0.00 3.46
274 275 3.751246 CCGGTGAGGGTACGCGAA 61.751 66.667 15.93 0.00 35.97 4.70
282 283 4.135153 CGACAGAGCCGGTGAGGG 62.135 72.222 1.90 0.00 41.48 4.30
283 284 3.343788 GACGACAGAGCCGGTGAGG 62.344 68.421 1.90 0.00 44.97 3.86
284 285 2.179517 GACGACAGAGCCGGTGAG 59.820 66.667 1.90 0.00 0.00 3.51
285 286 2.282251 AGACGACAGAGCCGGTGA 60.282 61.111 1.90 0.00 0.00 4.02
286 287 2.179517 GAGACGACAGAGCCGGTG 59.820 66.667 1.90 0.00 0.00 4.94
287 288 3.063084 GGAGACGACAGAGCCGGT 61.063 66.667 1.90 0.00 0.00 5.28
288 289 3.827898 GGGAGACGACAGAGCCGG 61.828 72.222 0.00 0.00 0.00 6.13
289 290 3.062466 TGGGAGACGACAGAGCCG 61.062 66.667 0.00 0.00 0.00 5.52
290 291 1.939769 GAGTGGGAGACGACAGAGCC 61.940 65.000 0.00 0.00 42.21 4.70
291 292 1.244697 TGAGTGGGAGACGACAGAGC 61.245 60.000 0.00 0.00 42.21 4.09
292 293 1.403679 GATGAGTGGGAGACGACAGAG 59.596 57.143 0.00 0.00 42.21 3.35
293 294 1.271926 TGATGAGTGGGAGACGACAGA 60.272 52.381 0.00 0.00 42.21 3.41
294 295 1.177401 TGATGAGTGGGAGACGACAG 58.823 55.000 0.00 0.00 42.21 3.51
295 296 1.627864 TTGATGAGTGGGAGACGACA 58.372 50.000 0.00 0.00 42.21 4.35
296 297 2.743636 TTTGATGAGTGGGAGACGAC 57.256 50.000 0.00 0.00 39.69 4.34
297 298 2.093500 CCATTTGATGAGTGGGAGACGA 60.093 50.000 0.00 0.00 0.00 4.20
298 299 2.283298 CCATTTGATGAGTGGGAGACG 58.717 52.381 0.00 0.00 0.00 4.18
299 300 2.019984 GCCATTTGATGAGTGGGAGAC 58.980 52.381 0.00 0.00 33.58 3.36
300 301 1.634973 TGCCATTTGATGAGTGGGAGA 59.365 47.619 0.00 0.00 33.58 3.71
301 302 2.133281 TGCCATTTGATGAGTGGGAG 57.867 50.000 0.00 0.00 33.58 4.30
302 303 2.170166 GTTGCCATTTGATGAGTGGGA 58.830 47.619 0.00 0.00 33.58 4.37
303 304 1.894466 TGTTGCCATTTGATGAGTGGG 59.106 47.619 0.00 0.00 33.58 4.61
304 305 2.296752 TGTGTTGCCATTTGATGAGTGG 59.703 45.455 0.00 0.00 36.09 4.00
305 306 3.646611 TGTGTTGCCATTTGATGAGTG 57.353 42.857 0.00 0.00 0.00 3.51
306 307 3.006110 CCTTGTGTTGCCATTTGATGAGT 59.994 43.478 0.00 0.00 0.00 3.41
307 308 3.006110 ACCTTGTGTTGCCATTTGATGAG 59.994 43.478 0.00 0.00 0.00 2.90
308 309 2.964464 ACCTTGTGTTGCCATTTGATGA 59.036 40.909 0.00 0.00 0.00 2.92
309 310 3.389925 ACCTTGTGTTGCCATTTGATG 57.610 42.857 0.00 0.00 0.00 3.07
320 321 7.513371 TTAATAAATCCGTCAACCTTGTGTT 57.487 32.000 0.00 0.00 37.80 3.32
321 322 7.696992 ATTAATAAATCCGTCAACCTTGTGT 57.303 32.000 0.00 0.00 0.00 3.72
350 351 9.322773 GCTTTTATATTAGTTTACGAAGGGAGT 57.677 33.333 0.00 0.00 0.00 3.85
351 352 8.485591 CGCTTTTATATTAGTTTACGAAGGGAG 58.514 37.037 0.00 0.00 0.00 4.30
352 353 7.981225 ACGCTTTTATATTAGTTTACGAAGGGA 59.019 33.333 0.00 0.00 0.00 4.20
353 354 8.134905 ACGCTTTTATATTAGTTTACGAAGGG 57.865 34.615 0.00 0.00 0.00 3.95
354 355 9.977762 AAACGCTTTTATATTAGTTTACGAAGG 57.022 29.630 0.00 0.00 31.14 3.46
412 413 9.819267 GCAACTACTTCCTCTGTAAACTAATAT 57.181 33.333 0.00 0.00 0.00 1.28
413 414 8.255905 GGCAACTACTTCCTCTGTAAACTAATA 58.744 37.037 0.00 0.00 0.00 0.98
414 415 7.104290 GGCAACTACTTCCTCTGTAAACTAAT 58.896 38.462 0.00 0.00 0.00 1.73
415 416 6.042322 TGGCAACTACTTCCTCTGTAAACTAA 59.958 38.462 0.00 0.00 37.61 2.24
416 417 5.541101 TGGCAACTACTTCCTCTGTAAACTA 59.459 40.000 0.00 0.00 37.61 2.24
417 418 4.347000 TGGCAACTACTTCCTCTGTAAACT 59.653 41.667 0.00 0.00 37.61 2.66
418 419 4.638304 TGGCAACTACTTCCTCTGTAAAC 58.362 43.478 0.00 0.00 37.61 2.01
419 420 4.591498 TCTGGCAACTACTTCCTCTGTAAA 59.409 41.667 0.00 0.00 37.61 2.01
420 421 4.021368 GTCTGGCAACTACTTCCTCTGTAA 60.021 45.833 0.00 0.00 37.61 2.41
421 422 3.510360 GTCTGGCAACTACTTCCTCTGTA 59.490 47.826 0.00 0.00 37.61 2.74
422 423 2.300437 GTCTGGCAACTACTTCCTCTGT 59.700 50.000 0.00 0.00 37.61 3.41
423 424 2.564947 AGTCTGGCAACTACTTCCTCTG 59.435 50.000 0.00 0.00 30.65 3.35
424 425 2.896039 AGTCTGGCAACTACTTCCTCT 58.104 47.619 0.00 0.00 30.65 3.69
425 426 3.686916 AAGTCTGGCAACTACTTCCTC 57.313 47.619 4.27 0.00 38.57 3.71
426 427 4.417437 TCTAAGTCTGGCAACTACTTCCT 58.583 43.478 11.47 0.00 41.61 3.36
427 428 4.803098 TCTAAGTCTGGCAACTACTTCC 57.197 45.455 11.47 0.00 41.61 3.46
428 429 6.398918 TGATTCTAAGTCTGGCAACTACTTC 58.601 40.000 11.47 1.20 41.61 3.01
429 430 6.360370 TGATTCTAAGTCTGGCAACTACTT 57.640 37.500 12.43 12.43 43.13 2.24
430 431 6.552445 ATGATTCTAAGTCTGGCAACTACT 57.448 37.500 3.37 0.00 35.41 2.57
431 432 6.457528 GCAATGATTCTAAGTCTGGCAACTAC 60.458 42.308 3.37 0.00 37.61 2.73
432 433 5.586243 GCAATGATTCTAAGTCTGGCAACTA 59.414 40.000 3.37 0.00 37.61 2.24
433 434 4.397417 GCAATGATTCTAAGTCTGGCAACT 59.603 41.667 0.00 0.00 37.61 3.16
434 435 4.156556 TGCAATGATTCTAAGTCTGGCAAC 59.843 41.667 0.00 0.00 0.00 4.17
435 436 4.156556 GTGCAATGATTCTAAGTCTGGCAA 59.843 41.667 0.00 0.00 0.00 4.52
436 437 3.691118 GTGCAATGATTCTAAGTCTGGCA 59.309 43.478 0.00 0.00 0.00 4.92
437 438 3.944015 AGTGCAATGATTCTAAGTCTGGC 59.056 43.478 0.00 0.00 0.00 4.85
438 439 5.757320 CCTAGTGCAATGATTCTAAGTCTGG 59.243 44.000 0.00 0.00 0.00 3.86
439 440 6.577103 TCCTAGTGCAATGATTCTAAGTCTG 58.423 40.000 0.00 0.00 0.00 3.51
440 441 6.798427 TCCTAGTGCAATGATTCTAAGTCT 57.202 37.500 0.00 0.00 0.00 3.24
441 442 7.170658 GTCATCCTAGTGCAATGATTCTAAGTC 59.829 40.741 0.00 0.00 32.45 3.01
442 443 6.989169 GTCATCCTAGTGCAATGATTCTAAGT 59.011 38.462 0.00 0.00 32.45 2.24
443 444 6.988580 TGTCATCCTAGTGCAATGATTCTAAG 59.011 38.462 0.00 0.00 32.45 2.18
444 445 6.888105 TGTCATCCTAGTGCAATGATTCTAA 58.112 36.000 0.00 0.00 32.45 2.10
445 446 6.484364 TGTCATCCTAGTGCAATGATTCTA 57.516 37.500 0.00 0.00 32.45 2.10
446 447 5.363562 TGTCATCCTAGTGCAATGATTCT 57.636 39.130 0.00 0.00 32.45 2.40
447 448 6.441093 TTTGTCATCCTAGTGCAATGATTC 57.559 37.500 0.00 0.00 32.45 2.52
448 449 7.776969 ACTATTTGTCATCCTAGTGCAATGATT 59.223 33.333 0.00 0.00 32.45 2.57
449 450 7.228108 CACTATTTGTCATCCTAGTGCAATGAT 59.772 37.037 0.00 0.00 35.95 2.45
450 451 6.539826 CACTATTTGTCATCCTAGTGCAATGA 59.460 38.462 0.00 0.00 35.95 2.57
451 452 6.722301 CACTATTTGTCATCCTAGTGCAATG 58.278 40.000 0.00 0.00 35.95 2.82
452 453 6.932356 CACTATTTGTCATCCTAGTGCAAT 57.068 37.500 0.00 0.00 35.95 3.56
456 457 5.065218 GGTTGCACTATTTGTCATCCTAGTG 59.935 44.000 10.45 10.45 42.44 2.74
457 458 5.186198 GGTTGCACTATTTGTCATCCTAGT 58.814 41.667 0.00 0.00 0.00 2.57
458 459 4.576463 GGGTTGCACTATTTGTCATCCTAG 59.424 45.833 0.00 0.00 0.00 3.02
459 460 4.523083 GGGTTGCACTATTTGTCATCCTA 58.477 43.478 0.00 0.00 0.00 2.94
460 461 3.356290 GGGTTGCACTATTTGTCATCCT 58.644 45.455 0.00 0.00 0.00 3.24
461 462 2.427095 GGGGTTGCACTATTTGTCATCC 59.573 50.000 0.00 0.00 0.00 3.51
462 463 2.427095 GGGGGTTGCACTATTTGTCATC 59.573 50.000 0.00 0.00 0.00 2.92
463 464 2.042979 AGGGGGTTGCACTATTTGTCAT 59.957 45.455 0.00 0.00 0.00 3.06
464 465 1.427368 AGGGGGTTGCACTATTTGTCA 59.573 47.619 0.00 0.00 0.00 3.58
465 466 1.818674 CAGGGGGTTGCACTATTTGTC 59.181 52.381 0.00 0.00 0.00 3.18
466 467 1.146982 ACAGGGGGTTGCACTATTTGT 59.853 47.619 0.00 0.00 0.00 2.83
467 468 1.545582 CACAGGGGGTTGCACTATTTG 59.454 52.381 0.00 0.00 0.00 2.32
468 469 1.146982 ACACAGGGGGTTGCACTATTT 59.853 47.619 0.00 0.00 0.00 1.40
469 470 0.777446 ACACAGGGGGTTGCACTATT 59.223 50.000 0.00 0.00 0.00 1.73
470 471 0.777446 AACACAGGGGGTTGCACTAT 59.223 50.000 0.00 0.00 0.00 2.12
471 472 0.179004 CAACACAGGGGGTTGCACTA 60.179 55.000 0.00 0.00 39.16 2.74
472 473 1.455587 CAACACAGGGGGTTGCACT 60.456 57.895 0.00 0.00 39.16 4.40
473 474 3.128375 CAACACAGGGGGTTGCAC 58.872 61.111 0.00 0.00 39.16 4.57
476 477 2.859981 GCAGCAACACAGGGGGTTG 61.860 63.158 6.98 6.98 46.41 3.77
477 478 2.521708 GCAGCAACACAGGGGGTT 60.522 61.111 0.00 0.00 0.00 4.11
478 479 3.501911 AGCAGCAACACAGGGGGT 61.502 61.111 0.00 0.00 0.00 4.95
479 480 2.987547 CAGCAGCAACACAGGGGG 60.988 66.667 0.00 0.00 0.00 5.40
480 481 2.203394 ACAGCAGCAACACAGGGG 60.203 61.111 0.00 0.00 0.00 4.79
481 482 1.228063 AGACAGCAGCAACACAGGG 60.228 57.895 0.00 0.00 0.00 4.45
482 483 1.947013 CAGACAGCAGCAACACAGG 59.053 57.895 0.00 0.00 0.00 4.00
483 484 1.281960 GCAGACAGCAGCAACACAG 59.718 57.895 0.00 0.00 44.79 3.66
484 485 3.424300 GCAGACAGCAGCAACACA 58.576 55.556 0.00 0.00 44.79 3.72
493 494 1.318158 CCAAATCCCTGGCAGACAGC 61.318 60.000 17.94 0.00 46.14 4.40
495 496 0.038166 GTCCAAATCCCTGGCAGACA 59.962 55.000 17.94 1.33 36.32 3.41
496 497 0.681243 GGTCCAAATCCCTGGCAGAC 60.681 60.000 17.94 3.19 36.32 3.51
497 498 1.691219 GGTCCAAATCCCTGGCAGA 59.309 57.895 17.94 0.00 36.32 4.26
498 499 1.380380 GGGTCCAAATCCCTGGCAG 60.380 63.158 7.75 7.75 41.58 4.85
499 500 2.770130 GGGTCCAAATCCCTGGCA 59.230 61.111 0.00 0.00 41.58 4.92
500 501 2.042944 GGGGTCCAAATCCCTGGC 60.043 66.667 0.96 0.00 44.07 4.85
501 502 2.275418 CGGGGTCCAAATCCCTGG 59.725 66.667 2.15 0.00 45.18 4.45
503 504 0.549169 TTCTCGGGGTCCAAATCCCT 60.549 55.000 0.96 0.00 44.07 4.20
504 505 0.330267 TTTCTCGGGGTCCAAATCCC 59.670 55.000 0.00 0.00 43.90 3.85
505 506 1.271707 TGTTTCTCGGGGTCCAAATCC 60.272 52.381 0.00 0.00 0.00 3.01
506 507 2.194201 TGTTTCTCGGGGTCCAAATC 57.806 50.000 0.00 0.00 0.00 2.17
507 508 2.668144 TTGTTTCTCGGGGTCCAAAT 57.332 45.000 0.00 0.00 0.00 2.32
508 509 2.438800 TTTGTTTCTCGGGGTCCAAA 57.561 45.000 0.00 0.00 0.00 3.28
509 510 2.438800 TTTTGTTTCTCGGGGTCCAA 57.561 45.000 0.00 0.00 0.00 3.53
510 511 2.668144 ATTTTGTTTCTCGGGGTCCA 57.332 45.000 0.00 0.00 0.00 4.02
511 512 3.192001 GGTTATTTTGTTTCTCGGGGTCC 59.808 47.826 0.00 0.00 0.00 4.46
512 513 4.077108 AGGTTATTTTGTTTCTCGGGGTC 58.923 43.478 0.00 0.00 0.00 4.46
513 514 4.108501 AGGTTATTTTGTTTCTCGGGGT 57.891 40.909 0.00 0.00 0.00 4.95
514 515 5.010213 TCAAAGGTTATTTTGTTTCTCGGGG 59.990 40.000 0.00 0.00 38.77 5.73
515 516 6.016610 TCTCAAAGGTTATTTTGTTTCTCGGG 60.017 38.462 0.00 0.00 38.77 5.14
516 517 6.966021 TCTCAAAGGTTATTTTGTTTCTCGG 58.034 36.000 0.00 0.00 38.77 4.63
517 518 9.118236 GATTCTCAAAGGTTATTTTGTTTCTCG 57.882 33.333 0.00 0.00 38.77 4.04
518 519 9.965824 TGATTCTCAAAGGTTATTTTGTTTCTC 57.034 29.630 0.00 0.00 38.77 2.87
522 523 9.480053 CACATGATTCTCAAAGGTTATTTTGTT 57.520 29.630 0.00 0.00 38.77 2.83
523 524 8.859090 TCACATGATTCTCAAAGGTTATTTTGT 58.141 29.630 0.00 0.00 38.77 2.83
524 525 9.865321 ATCACATGATTCTCAAAGGTTATTTTG 57.135 29.630 0.00 0.00 38.97 2.44
525 526 9.865321 CATCACATGATTCTCAAAGGTTATTTT 57.135 29.630 0.00 0.00 31.21 1.82
526 527 7.977853 GCATCACATGATTCTCAAAGGTTATTT 59.022 33.333 0.00 0.00 31.21 1.40
527 528 7.486647 GCATCACATGATTCTCAAAGGTTATT 58.513 34.615 0.00 0.00 31.21 1.40
528 529 6.238566 CGCATCACATGATTCTCAAAGGTTAT 60.239 38.462 0.00 0.00 31.21 1.89
529 530 5.065090 CGCATCACATGATTCTCAAAGGTTA 59.935 40.000 0.00 0.00 31.21 2.85
530 531 4.142534 CGCATCACATGATTCTCAAAGGTT 60.143 41.667 0.00 0.00 31.21 3.50
531 532 3.376234 CGCATCACATGATTCTCAAAGGT 59.624 43.478 0.00 0.00 31.21 3.50
532 533 3.624410 TCGCATCACATGATTCTCAAAGG 59.376 43.478 0.00 0.00 31.21 3.11
533 534 4.870221 TCGCATCACATGATTCTCAAAG 57.130 40.909 0.00 0.00 31.21 2.77
534 535 4.877251 TGATCGCATCACATGATTCTCAAA 59.123 37.500 0.00 0.00 33.59 2.69
535 536 4.444536 TGATCGCATCACATGATTCTCAA 58.555 39.130 0.00 0.00 33.59 3.02
536 537 4.062677 TGATCGCATCACATGATTCTCA 57.937 40.909 0.00 0.00 33.59 3.27
537 538 4.451435 ACATGATCGCATCACATGATTCTC 59.549 41.667 12.24 0.00 43.01 2.87
538 539 4.213482 CACATGATCGCATCACATGATTCT 59.787 41.667 12.24 0.00 43.01 2.40
539 540 4.464112 CACATGATCGCATCACATGATTC 58.536 43.478 12.24 0.00 43.01 2.52
540 541 3.304458 GCACATGATCGCATCACATGATT 60.304 43.478 12.24 0.00 43.01 2.57
541 542 2.225727 GCACATGATCGCATCACATGAT 59.774 45.455 12.24 0.00 43.01 2.45
542 543 1.600485 GCACATGATCGCATCACATGA 59.400 47.619 12.24 0.00 43.01 3.07
543 544 1.602377 AGCACATGATCGCATCACATG 59.398 47.619 0.00 0.00 43.01 3.21
544 545 1.602377 CAGCACATGATCGCATCACAT 59.398 47.619 0.00 0.00 43.01 3.21
545 546 1.011333 CAGCACATGATCGCATCACA 58.989 50.000 0.00 0.00 43.01 3.58
546 547 1.260825 CTCAGCACATGATCGCATCAC 59.739 52.381 0.00 0.00 43.01 3.06
547 548 1.134610 ACTCAGCACATGATCGCATCA 60.135 47.619 0.00 2.05 44.55 3.07
548 549 1.526041 GACTCAGCACATGATCGCATC 59.474 52.381 0.00 0.00 37.28 3.91
549 550 1.138464 AGACTCAGCACATGATCGCAT 59.862 47.619 0.00 0.00 37.28 4.73
550 551 0.533951 AGACTCAGCACATGATCGCA 59.466 50.000 0.00 0.00 37.28 5.10
551 552 2.498807 TAGACTCAGCACATGATCGC 57.501 50.000 0.00 0.00 37.28 4.58
552 553 4.502171 AGATAGACTCAGCACATGATCG 57.498 45.455 0.00 0.00 37.28 3.69
553 554 5.840715 TGAAGATAGACTCAGCACATGATC 58.159 41.667 0.00 0.00 37.28 2.92
554 555 5.866159 TGAAGATAGACTCAGCACATGAT 57.134 39.130 0.00 0.00 37.28 2.45
555 556 5.128335 ACATGAAGATAGACTCAGCACATGA 59.872 40.000 0.00 0.00 36.92 3.07
556 557 5.358090 ACATGAAGATAGACTCAGCACATG 58.642 41.667 0.00 0.00 38.59 3.21
557 558 5.611128 ACATGAAGATAGACTCAGCACAT 57.389 39.130 0.00 0.00 0.00 3.21
558 559 5.411831 AACATGAAGATAGACTCAGCACA 57.588 39.130 0.00 0.00 0.00 4.57
559 560 5.641209 ACAAACATGAAGATAGACTCAGCAC 59.359 40.000 0.00 0.00 0.00 4.40
560 561 5.798132 ACAAACATGAAGATAGACTCAGCA 58.202 37.500 0.00 0.00 0.00 4.41
561 562 6.593382 AGAACAAACATGAAGATAGACTCAGC 59.407 38.462 0.00 0.00 0.00 4.26
562 563 8.545229 AAGAACAAACATGAAGATAGACTCAG 57.455 34.615 0.00 0.00 0.00 3.35
563 564 8.908786 AAAGAACAAACATGAAGATAGACTCA 57.091 30.769 0.00 0.00 0.00 3.41
614 615 3.010624 TCGTCACGTTTCCGTCAAATA 57.989 42.857 0.00 0.00 46.28 1.40
666 667 3.749609 CGGTTTAGGACAAAAGTGGTAGG 59.250 47.826 0.00 0.00 0.00 3.18
1168 1199 1.697432 CACACTGTCAGGGGTTTCCTA 59.303 52.381 7.11 0.00 46.12 2.94
1204 1235 4.556233 TCAGATTCAGTGTAAGAACCACG 58.444 43.478 0.00 0.00 37.88 4.94
1333 1364 5.050837 CCAGCAAAGCAAATAAGTGTTCAAC 60.051 40.000 0.00 0.00 0.00 3.18
1487 1585 6.205464 CAGTTAACATGTGTTCTCAGGTTCAT 59.795 38.462 8.61 0.00 40.59 2.57
1853 2147 3.747708 GCTTGTTTGTCCTTCACCCTACT 60.748 47.826 0.00 0.00 0.00 2.57
1908 2202 8.181573 TGTAGTTGTTTGACAGAAACTCAATTC 58.818 33.333 0.00 0.00 34.76 2.17
1918 2212 3.118408 ACTGGCTGTAGTTGTTTGACAGA 60.118 43.478 5.47 0.00 42.65 3.41
2038 2332 4.836825 CCTGATCCTCAAGTTGCTTCTTA 58.163 43.478 0.00 0.00 0.00 2.10
2176 2470 3.185880 TGCTTAAGTAGGTCCCTGTCT 57.814 47.619 4.02 0.00 0.00 3.41
2251 2545 4.290093 TCCTCTCCAGCTTATCTTTGCTA 58.710 43.478 0.00 0.00 37.81 3.49
2276 2570 6.543465 CCACTTCACTCATTCATTATTGCCTA 59.457 38.462 0.00 0.00 0.00 3.93
2325 2619 6.498538 AGGCCAGCTATATATATAGGCCTAG 58.501 44.000 32.51 17.89 43.46 3.02
2667 4943 6.986231 TGATTTGGACTGTATGCTACTATGTG 59.014 38.462 0.00 0.00 0.00 3.21
2697 4973 8.314143 TGTATGCTACTAAGTTTGTGGTTTAC 57.686 34.615 0.00 4.84 0.00 2.01
2698 4974 8.905660 TTGTATGCTACTAAGTTTGTGGTTTA 57.094 30.769 0.00 0.00 0.00 2.01
2699 4975 7.811117 TTGTATGCTACTAAGTTTGTGGTTT 57.189 32.000 0.00 0.00 0.00 3.27
2702 4978 6.597672 TGGATTGTATGCTACTAAGTTTGTGG 59.402 38.462 0.00 0.00 0.00 4.17
2704 4980 8.630054 TTTGGATTGTATGCTACTAAGTTTGT 57.370 30.769 0.00 0.00 0.00 2.83
2764 5041 3.393800 TCTGTGCTGCTACTTGAAGTTC 58.606 45.455 1.97 0.00 0.00 3.01
2854 5131 5.491078 ACTGGAGAACCTGGGATATTAACAA 59.509 40.000 0.00 0.00 39.06 2.83
2879 6086 4.322123 CCATTCAATGCACCAAGAACATCA 60.322 41.667 0.00 0.00 0.00 3.07
2937 6168 0.819259 GCCAGGTCTTCAACAGCACA 60.819 55.000 0.00 0.00 0.00 4.57
2944 6175 1.130054 AGGAGCAGCCAGGTCTTCAA 61.130 55.000 6.01 0.00 44.16 2.69
3081 6324 1.361668 GCTACACATGTGCCTCCACG 61.362 60.000 25.68 7.36 45.04 4.94
3117 6363 7.281774 TGTCATGCAGGAGAATAGAGAAATTTC 59.718 37.037 10.33 10.33 0.00 2.17
3215 6465 6.407202 ACACCAGGTCTTGAGATATACAAAC 58.593 40.000 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.