Multiple sequence alignment - TraesCS6D01G378500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G378500 chr6D 100.000 7174 0 0 1 7174 460740098 460747271 0.000000e+00 13248.0
1 TraesCS6D01G378500 chr6B 92.980 4074 168 53 811 4819 701982875 701986895 0.000000e+00 5830.0
2 TraesCS6D01G378500 chr6B 94.460 704 39 0 5141 5844 701987300 701988003 0.000000e+00 1085.0
3 TraesCS6D01G378500 chr6B 93.788 499 26 4 5882 6377 701988200 701988696 0.000000e+00 745.0
4 TraesCS6D01G378500 chr6B 85.152 330 24 10 6807 7112 702143302 702143630 1.500000e-81 315.0
5 TraesCS6D01G378500 chr6B 93.077 130 5 2 5003 5128 701987114 701987243 3.420000e-43 187.0
6 TraesCS6D01G378500 chr6B 88.079 151 8 5 607 748 701982702 701982851 3.440000e-38 171.0
7 TraesCS6D01G378500 chr6B 85.470 117 0 5 36 136 701982036 701982151 9.840000e-19 106.0
8 TraesCS6D01G378500 chr6A 93.924 3341 127 38 828 4131 606991409 606994710 0.000000e+00 4975.0
9 TraesCS6D01G378500 chr6A 91.442 1519 80 23 5127 6632 606995605 606997086 0.000000e+00 2039.0
10 TraesCS6D01G378500 chr6A 96.341 656 16 2 4167 4819 606994711 606995361 0.000000e+00 1072.0
11 TraesCS6D01G378500 chr6A 87.815 238 5 11 8 235 606990235 606990458 2.570000e-64 257.0
12 TraesCS6D01G378500 chr6A 90.341 176 16 1 4820 4994 442395545 442395720 5.600000e-56 230.0
13 TraesCS6D01G378500 chr6A 83.756 197 16 14 614 801 606990746 606990935 9.570000e-39 172.0
14 TraesCS6D01G378500 chr6A 87.500 152 6 4 4988 5128 606995362 606995511 5.760000e-36 163.0
15 TraesCS6D01G378500 chr6A 80.952 189 11 10 7001 7170 606997716 606997898 7.560000e-25 126.0
16 TraesCS6D01G378500 chr6A 100.000 54 0 0 6646 6699 606997209 606997262 4.580000e-17 100.0
17 TraesCS6D01G378500 chr5B 89.964 558 38 9 1731 2282 380602723 380603268 0.000000e+00 704.0
18 TraesCS6D01G378500 chr5B 86.041 394 49 4 1307 1699 380602333 380602721 1.110000e-112 418.0
19 TraesCS6D01G378500 chr5B 89.071 183 17 3 4822 5001 318403221 318403039 2.600000e-54 224.0
20 TraesCS6D01G378500 chr5B 100.000 29 0 0 6604 6632 448443020 448443048 4.000000e-03 54.7
21 TraesCS6D01G378500 chr4B 89.711 554 50 7 1732 2281 330287483 330286933 0.000000e+00 701.0
22 TraesCS6D01G378500 chr4B 88.806 402 36 6 1296 1696 136334985 136335378 1.080000e-132 484.0
23 TraesCS6D01G378500 chr4B 91.538 130 8 2 1731 1858 136335383 136335511 7.400000e-40 176.0
24 TraesCS6D01G378500 chr4B 78.882 161 26 6 6475 6632 115882688 115882843 1.270000e-17 102.0
25 TraesCS6D01G378500 chr3B 89.059 393 37 4 1308 1699 186547966 186547579 3.890000e-132 483.0
26 TraesCS6D01G378500 chr3B 90.000 130 10 2 1731 1858 186547577 186547449 1.600000e-36 165.0
27 TraesCS6D01G378500 chr3B 82.873 181 14 7 2112 2285 186547256 186547086 5.800000e-31 147.0
28 TraesCS6D01G378500 chr1B 87.940 398 41 5 1303 1699 150714398 150714007 5.070000e-126 462.0
29 TraesCS6D01G378500 chr1B 91.538 130 8 2 1731 1858 150714005 150713877 7.400000e-40 176.0
30 TraesCS6D01G378500 chr1B 83.889 180 13 7 2112 2285 150713684 150713515 2.680000e-34 158.0
31 TraesCS6D01G378500 chr1B 94.937 79 3 1 1373 1451 103028118 103028195 9.770000e-24 122.0
32 TraesCS6D01G378500 chr1B 81.982 111 14 5 6477 6586 631154644 631154749 9.910000e-14 89.8
33 TraesCS6D01G378500 chr1B 88.710 62 3 4 6488 6549 328831953 328831896 9.980000e-09 73.1
34 TraesCS6D01G378500 chr2B 87.065 402 43 6 1296 1696 744546721 744547114 5.110000e-121 446.0
35 TraesCS6D01G378500 chr2B 91.538 130 8 2 1731 1858 744547119 744547247 7.400000e-40 176.0
36 TraesCS6D01G378500 chr2B 84.699 183 13 6 2106 2282 744547402 744547575 1.240000e-37 169.0
37 TraesCS6D01G378500 chr2B 84.049 163 20 6 6284 6443 773409547 773409706 1.250000e-32 152.0
38 TraesCS6D01G378500 chr2B 91.954 87 5 2 1373 1458 97976099 97976184 3.520000e-23 121.0
39 TraesCS6D01G378500 chr5D 93.252 163 11 0 4829 4991 150835568 150835730 2.590000e-59 241.0
40 TraesCS6D01G378500 chr5D 92.638 163 12 0 4829 4991 461072602 461072764 1.200000e-57 235.0
41 TraesCS6D01G378500 chr5D 100.000 30 0 0 6603 6632 489895470 489895441 1.000000e-03 56.5
42 TraesCS6D01G378500 chr4A 92.308 169 12 1 4829 4997 150653313 150653480 9.300000e-59 239.0
43 TraesCS6D01G378500 chr4A 100.000 28 0 0 6605 6632 231961850 231961877 1.300000e-02 52.8
44 TraesCS6D01G378500 chr4D 91.716 169 13 1 4823 4990 21147900 21147732 4.330000e-57 233.0
45 TraesCS6D01G378500 chr2A 90.286 175 16 1 4818 4991 70985757 70985583 2.010000e-55 228.0
46 TraesCS6D01G378500 chr2A 90.230 174 17 0 4825 4998 184561319 184561146 2.010000e-55 228.0
47 TraesCS6D01G378500 chr2A 90.265 113 10 1 6322 6433 760601781 760601893 5.800000e-31 147.0
48 TraesCS6D01G378500 chr2A 76.647 167 24 13 6475 6632 446566521 446566361 2.150000e-10 78.7
49 TraesCS6D01G378500 chr7D 88.587 184 17 3 4821 5003 549315036 549315216 3.370000e-53 220.0
50 TraesCS6D01G378500 chr7D 79.104 134 18 4 6501 6633 55396962 55396838 4.610000e-12 84.2
51 TraesCS6D01G378500 chr7A 87.059 85 6 5 6477 6560 509466203 509466123 2.760000e-14 91.6
52 TraesCS6D01G378500 chr7A 77.372 137 21 8 6499 6632 732037088 732037217 9.980000e-09 73.1
53 TraesCS6D01G378500 chr2D 88.158 76 5 3 6371 6442 630464822 630464897 3.570000e-13 87.9
54 TraesCS6D01G378500 chr2D 92.500 40 1 1 6592 6631 477994401 477994364 1.000000e-03 56.5
55 TraesCS6D01G378500 chr2D 96.970 33 1 0 6603 6635 620639154 620639122 1.000000e-03 56.5
56 TraesCS6D01G378500 chr7B 95.652 46 2 0 6488 6533 731346206 731346161 2.780000e-09 75.0
57 TraesCS6D01G378500 chr5A 94.286 35 2 0 6496 6530 670572355 670572321 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G378500 chr6D 460740098 460747271 7173 False 13248.000000 13248 100.000000 1 7174 1 chr6D.!!$F1 7173
1 TraesCS6D01G378500 chr6B 701982036 701988696 6660 False 1354.000000 5830 91.309000 36 6377 6 chr6B.!!$F2 6341
2 TraesCS6D01G378500 chr6A 606990235 606997898 7663 False 1113.000000 4975 90.216250 8 7170 8 chr6A.!!$F2 7162
3 TraesCS6D01G378500 chr5B 380602333 380603268 935 False 561.000000 704 88.002500 1307 2282 2 chr5B.!!$F2 975
4 TraesCS6D01G378500 chr4B 330286933 330287483 550 True 701.000000 701 89.711000 1732 2281 1 chr4B.!!$R1 549
5 TraesCS6D01G378500 chr4B 136334985 136335511 526 False 330.000000 484 90.172000 1296 1858 2 chr4B.!!$F2 562
6 TraesCS6D01G378500 chr3B 186547086 186547966 880 True 265.000000 483 87.310667 1308 2285 3 chr3B.!!$R1 977
7 TraesCS6D01G378500 chr1B 150713515 150714398 883 True 265.333333 462 87.789000 1303 2285 3 chr1B.!!$R2 982
8 TraesCS6D01G378500 chr2B 744546721 744547575 854 False 263.666667 446 87.767333 1296 2282 3 chr2B.!!$F3 986

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 746 0.098025 CGTCTCTCTCTCTTCGTGGC 59.902 60.0 0.00 0.0 0.00 5.01 F
602 747 0.454196 GTCTCTCTCTCTTCGTGGCC 59.546 60.0 0.00 0.0 0.00 5.36 F
1931 2597 0.322546 GAGTTGTGGTGGGCCTTAGG 60.323 60.0 4.53 0.0 35.27 2.69 F
3054 3845 0.037419 CCCCACCGGCTTTTCAAATG 60.037 55.0 0.00 0.0 0.00 2.32 F
4491 5321 0.888736 TCCACCATGCACCTTGAACG 60.889 55.0 0.00 0.0 0.00 3.95 F
5667 6819 0.250124 TAACTGCACCTGTGAACCCG 60.250 55.0 0.51 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 2597 0.823356 TCAAGTGCTTCAAGGGGTGC 60.823 55.000 0.00 0.0 0.00 5.01 R
1934 2600 1.612726 CCTCTCAAGTGCTTCAAGGGG 60.613 57.143 0.00 0.0 0.00 4.79 R
3457 4251 1.593196 ATTCATTACCATCACGGCGG 58.407 50.000 13.24 0.0 39.03 6.13 R
4975 5814 0.896226 ACAAGTACTCCCTCCGCTTC 59.104 55.000 0.00 0.0 0.00 3.86 R
6107 7418 0.918983 CCAGGTAATTCAGGCCCTCA 59.081 55.000 0.00 0.0 0.00 3.86 R
6632 7966 0.167689 GCTTGTAGCTCTGCTTGTGC 59.832 55.000 0.00 0.0 40.44 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 112 0.179001 CGTTTTGGGGGAGAAGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
254 271 4.572571 GGTTGGCGTGTGGGGACA 62.573 66.667 0.00 0.00 38.70 4.02
255 272 2.517402 GTTGGCGTGTGGGGACAA 60.517 61.111 0.00 0.00 46.06 3.18
256 273 2.203280 TTGGCGTGTGGGGACAAG 60.203 61.111 0.00 0.00 46.06 3.16
257 274 3.783362 TTGGCGTGTGGGGACAAGG 62.783 63.158 0.00 0.00 46.06 3.61
258 275 3.948719 GGCGTGTGGGGACAAGGA 61.949 66.667 0.00 0.00 46.06 3.36
259 276 2.358737 GCGTGTGGGGACAAGGAG 60.359 66.667 0.00 0.00 46.06 3.69
260 277 2.879233 GCGTGTGGGGACAAGGAGA 61.879 63.158 0.00 0.00 46.06 3.71
261 278 1.293498 CGTGTGGGGACAAGGAGAG 59.707 63.158 0.00 0.00 46.06 3.20
262 279 1.003233 GTGTGGGGACAAGGAGAGC 60.003 63.158 0.00 0.00 46.06 4.09
263 280 1.461268 TGTGGGGACAAGGAGAGCA 60.461 57.895 0.00 0.00 46.06 4.26
264 281 0.842030 TGTGGGGACAAGGAGAGCAT 60.842 55.000 0.00 0.00 46.06 3.79
265 282 0.107459 GTGGGGACAAGGAGAGCATC 60.107 60.000 0.00 0.00 46.06 3.91
266 283 0.252881 TGGGGACAAGGAGAGCATCT 60.253 55.000 0.00 0.00 45.25 2.90
267 284 2.520307 TGGGGACAAGGAGAGCATCTG 61.520 57.143 0.00 0.00 42.74 2.90
278 295 3.885521 GCATCTGGCGGCTTCAGC 61.886 66.667 11.43 5.90 41.14 4.26
279 296 3.570638 CATCTGGCGGCTTCAGCG 61.571 66.667 11.43 0.00 43.26 5.18
280 297 4.845580 ATCTGGCGGCTTCAGCGG 62.846 66.667 11.43 2.08 43.26 5.52
288 305 3.577313 GCTTCAGCGGCGGGAATC 61.577 66.667 9.78 3.71 0.00 2.52
304 321 1.330655 AATCGATCCGGTGTCTGGCT 61.331 55.000 0.00 0.00 0.00 4.75
362 501 7.072263 AGTTGATTGAAGAGGAGAGAAGAAA 57.928 36.000 0.00 0.00 0.00 2.52
363 502 7.512992 AGTTGATTGAAGAGGAGAGAAGAAAA 58.487 34.615 0.00 0.00 0.00 2.29
364 503 7.661027 AGTTGATTGAAGAGGAGAGAAGAAAAG 59.339 37.037 0.00 0.00 0.00 2.27
365 504 6.471146 TGATTGAAGAGGAGAGAAGAAAAGG 58.529 40.000 0.00 0.00 0.00 3.11
366 505 4.278975 TGAAGAGGAGAGAAGAAAAGGC 57.721 45.455 0.00 0.00 0.00 4.35
373 512 1.882623 AGAGAAGAAAAGGCAAAGGCG 59.117 47.619 0.00 0.00 42.47 5.52
408 547 1.327690 CCCTCGAGGTTCGGGAATCA 61.328 60.000 29.25 0.00 44.60 2.57
425 564 2.119832 AGTCAGGTGCGGGGTACT 59.880 61.111 0.00 0.00 0.00 2.73
432 571 3.151710 TGCGGGGTACTGATCGGG 61.152 66.667 6.47 0.00 0.00 5.14
437 576 1.065998 CGGGGTACTGATCGGGAAAAA 60.066 52.381 6.47 0.00 0.00 1.94
438 577 2.640184 GGGGTACTGATCGGGAAAAAG 58.360 52.381 6.47 0.00 0.00 2.27
439 578 2.014857 GGGTACTGATCGGGAAAAAGC 58.985 52.381 6.47 0.00 0.00 3.51
440 579 2.617021 GGGTACTGATCGGGAAAAAGCA 60.617 50.000 6.47 0.00 0.00 3.91
441 580 2.678336 GGTACTGATCGGGAAAAAGCAG 59.322 50.000 6.47 0.00 0.00 4.24
442 581 1.168714 ACTGATCGGGAAAAAGCAGC 58.831 50.000 6.47 0.00 0.00 5.25
443 582 0.453390 CTGATCGGGAAAAAGCAGCC 59.547 55.000 0.00 0.00 0.00 4.85
444 583 0.965363 TGATCGGGAAAAAGCAGCCC 60.965 55.000 0.00 0.00 38.53 5.19
445 584 0.965363 GATCGGGAAAAAGCAGCCCA 60.965 55.000 0.00 0.00 42.14 5.36
446 585 1.250840 ATCGGGAAAAAGCAGCCCAC 61.251 55.000 0.00 0.00 42.14 4.61
447 586 2.931068 CGGGAAAAAGCAGCCCACC 61.931 63.158 0.00 0.00 42.14 4.61
448 587 1.533994 GGGAAAAAGCAGCCCACCT 60.534 57.895 0.00 0.00 41.64 4.00
449 588 1.536073 GGGAAAAAGCAGCCCACCTC 61.536 60.000 0.00 0.00 41.64 3.85
450 589 1.581447 GAAAAAGCAGCCCACCTCG 59.419 57.895 0.00 0.00 0.00 4.63
451 590 1.866853 GAAAAAGCAGCCCACCTCGG 61.867 60.000 0.00 0.00 0.00 4.63
452 591 2.640581 AAAAAGCAGCCCACCTCGGT 62.641 55.000 0.00 0.00 0.00 4.69
453 592 3.553095 AAAGCAGCCCACCTCGGTC 62.553 63.158 0.00 0.00 0.00 4.79
456 595 3.461773 CAGCCCACCTCGGTCGAT 61.462 66.667 0.00 0.00 0.00 3.59
457 596 3.461773 AGCCCACCTCGGTCGATG 61.462 66.667 0.00 0.00 0.00 3.84
479 618 0.904649 TGGATGGACAGCGAATCACT 59.095 50.000 0.00 0.00 0.00 3.41
536 681 2.039084 TCCAGGGAGAAGAAACAAGAGC 59.961 50.000 0.00 0.00 0.00 4.09
537 682 2.224621 CCAGGGAGAAGAAACAAGAGCA 60.225 50.000 0.00 0.00 0.00 4.26
538 683 3.480470 CAGGGAGAAGAAACAAGAGCAA 58.520 45.455 0.00 0.00 0.00 3.91
539 684 3.251972 CAGGGAGAAGAAACAAGAGCAAC 59.748 47.826 0.00 0.00 0.00 4.17
540 685 2.224314 GGGAGAAGAAACAAGAGCAACG 59.776 50.000 0.00 0.00 0.00 4.10
541 686 2.872858 GGAGAAGAAACAAGAGCAACGT 59.127 45.455 0.00 0.00 0.00 3.99
542 687 3.059529 GGAGAAGAAACAAGAGCAACGTC 60.060 47.826 0.00 0.00 0.00 4.34
543 688 2.872858 AGAAGAAACAAGAGCAACGTCC 59.127 45.455 0.00 0.00 0.00 4.79
544 689 2.622064 AGAAACAAGAGCAACGTCCT 57.378 45.000 0.00 0.00 0.00 3.85
545 690 2.919228 AGAAACAAGAGCAACGTCCTT 58.081 42.857 0.00 0.00 0.00 3.36
546 691 2.872858 AGAAACAAGAGCAACGTCCTTC 59.127 45.455 0.00 0.00 0.00 3.46
547 692 2.325583 AACAAGAGCAACGTCCTTCA 57.674 45.000 0.00 0.00 0.00 3.02
548 693 1.871080 ACAAGAGCAACGTCCTTCAG 58.129 50.000 0.00 0.00 0.00 3.02
549 694 1.139058 ACAAGAGCAACGTCCTTCAGT 59.861 47.619 0.00 0.00 0.00 3.41
550 695 2.213499 CAAGAGCAACGTCCTTCAGTT 58.787 47.619 0.00 0.00 0.00 3.16
551 696 2.614057 CAAGAGCAACGTCCTTCAGTTT 59.386 45.455 0.00 0.00 0.00 2.66
552 697 2.213499 AGAGCAACGTCCTTCAGTTTG 58.787 47.619 0.00 0.00 0.00 2.93
553 698 0.663153 AGCAACGTCCTTCAGTTTGC 59.337 50.000 0.00 0.00 0.00 3.68
554 699 0.663153 GCAACGTCCTTCAGTTTGCT 59.337 50.000 0.00 0.00 0.00 3.91
555 700 1.065551 GCAACGTCCTTCAGTTTGCTT 59.934 47.619 0.00 0.00 0.00 3.91
556 701 2.479560 GCAACGTCCTTCAGTTTGCTTT 60.480 45.455 0.00 0.00 0.00 3.51
557 702 3.769536 CAACGTCCTTCAGTTTGCTTTT 58.230 40.909 0.00 0.00 0.00 2.27
583 728 3.708734 AAAAAGCCGGCGTCGTCG 61.709 61.111 23.20 13.24 40.37 5.12
584 729 4.955774 AAAAGCCGGCGTCGTCGT 62.956 61.111 23.20 0.00 39.49 4.34
589 734 4.517703 CCGGCGTCGTCGTCTCTC 62.518 72.222 18.95 0.00 39.73 3.20
590 735 3.488978 CGGCGTCGTCGTCTCTCT 61.489 66.667 11.83 0.00 39.73 3.10
592 737 2.101835 GGCGTCGTCGTCTCTCTCT 61.102 63.158 3.66 0.00 38.74 3.10
593 738 1.345856 GCGTCGTCGTCTCTCTCTC 59.654 63.158 3.66 0.00 39.49 3.20
594 739 1.079875 GCGTCGTCGTCTCTCTCTCT 61.080 60.000 3.66 0.00 39.49 3.10
595 740 1.352114 CGTCGTCGTCTCTCTCTCTT 58.648 55.000 0.00 0.00 0.00 2.85
598 743 1.067706 TCGTCGTCTCTCTCTCTTCGT 60.068 52.381 0.00 0.00 0.00 3.85
599 744 1.059979 CGTCGTCTCTCTCTCTTCGTG 59.940 57.143 0.00 0.00 0.00 4.35
600 745 1.395608 GTCGTCTCTCTCTCTTCGTGG 59.604 57.143 0.00 0.00 0.00 4.94
601 746 0.098025 CGTCTCTCTCTCTTCGTGGC 59.902 60.000 0.00 0.00 0.00 5.01
602 747 0.454196 GTCTCTCTCTCTTCGTGGCC 59.546 60.000 0.00 0.00 0.00 5.36
604 749 1.002502 TCTCTCTCTTCGTGGCCGA 60.003 57.895 0.00 0.00 42.41 5.54
701 886 3.317149 TCCAAACGAACGATCCGATCTAT 59.683 43.478 6.81 0.00 0.00 1.98
705 890 6.347969 CCAAACGAACGATCCGATCTATACTA 60.348 42.308 6.81 0.00 0.00 1.82
801 989 6.680810 TGCAGACTGATATTTTGGACAAAAG 58.319 36.000 14.59 4.57 42.72 2.27
804 992 8.031277 GCAGACTGATATTTTGGACAAAAGAAT 58.969 33.333 14.59 10.74 42.72 2.40
807 995 9.508567 GACTGATATTTTGGACAAAAGAATAGC 57.491 33.333 14.59 7.02 42.72 2.97
808 996 9.247861 ACTGATATTTTGGACAAAAGAATAGCT 57.752 29.630 14.59 0.00 42.72 3.32
809 997 9.727627 CTGATATTTTGGACAAAAGAATAGCTC 57.272 33.333 14.59 6.19 42.72 4.09
825 1013 8.754230 AGAATAGCTCAAAGAAAAAGAAATGC 57.246 30.769 0.00 0.00 0.00 3.56
829 1465 4.450080 GCTCAAAGAAAAAGAAATGCTGGG 59.550 41.667 0.00 0.00 0.00 4.45
920 1556 1.507562 TTCATTTTCGCTCTCGCACA 58.492 45.000 0.00 0.00 35.30 4.57
922 1558 0.519999 CATTTTCGCTCTCGCACAGC 60.520 55.000 0.00 0.00 35.30 4.40
1116 1760 4.977126 CGAGCCGTATCCGTCGCC 62.977 72.222 0.00 0.00 0.00 5.54
1206 1850 4.531426 TGCCCGCACCCCAACTTT 62.531 61.111 0.00 0.00 0.00 2.66
1433 2080 0.471617 CTCGCCTGAATGAATCCCCT 59.528 55.000 0.00 0.00 0.00 4.79
1538 2185 2.826428 CAAGCATACGATGGTAGCACT 58.174 47.619 0.00 0.00 40.65 4.40
1573 2220 7.517614 TTCTGATCTGTCATAGATAGTGGAC 57.482 40.000 0.00 0.00 46.12 4.02
1592 2239 7.664758 AGTGGACGTTCTATGGGTATAATAAC 58.335 38.462 0.00 0.00 0.00 1.89
1624 2272 7.014711 TGCTAGATACTTGTTCTCCCTTATCTG 59.985 40.741 0.00 0.00 30.69 2.90
1636 2284 4.045022 TCCCTTATCTGAACCCCCTAAAG 58.955 47.826 0.00 0.00 0.00 1.85
1644 2292 5.098663 TCTGAACCCCCTAAAGTTCTATGT 58.901 41.667 4.70 0.00 42.32 2.29
1645 2293 6.266080 TCTGAACCCCCTAAAGTTCTATGTA 58.734 40.000 4.70 0.00 42.32 2.29
1646 2294 6.155737 TCTGAACCCCCTAAAGTTCTATGTAC 59.844 42.308 4.70 0.00 42.32 2.90
1715 2363 3.030291 GGTGTGCAAATTGGATCCCATA 58.970 45.455 9.90 0.00 31.53 2.74
1772 2421 3.119743 GCTTGCTTGCATGAACACTGATA 60.120 43.478 11.81 0.00 0.00 2.15
1837 2486 5.657470 TTAGTCATACGCATTCAGATTGC 57.343 39.130 7.16 7.16 36.74 3.56
1839 2488 1.866601 TCATACGCATTCAGATTGCCG 59.133 47.619 10.96 8.89 36.75 5.69
1931 2597 0.322546 GAGTTGTGGTGGGCCTTAGG 60.323 60.000 4.53 0.00 35.27 2.69
2063 2729 9.905713 ACTCTTGGCTTATATGTTAATTCTCAA 57.094 29.630 0.00 0.00 0.00 3.02
2184 2940 8.925700 CCATTTTTAGAAGTGGTTTAGCAATTC 58.074 33.333 12.58 12.58 37.74 2.17
2334 3099 2.848302 GCTTTGTAAGATCATGCGTTGC 59.152 45.455 0.00 0.00 0.00 4.17
2352 3117 4.318903 CGTTGCACGGTTATAGTTTTGTGA 60.319 41.667 0.00 0.00 38.08 3.58
2380 3145 9.283768 TGTGACAGTTGACACTAATGATAAAAT 57.716 29.630 13.99 0.00 40.43 1.82
2381 3146 9.546909 GTGACAGTTGACACTAATGATAAAATG 57.453 33.333 7.34 0.00 37.64 2.32
2456 3225 8.081633 GTCCACTTCTATTGATCTATCTGAGTG 58.918 40.741 14.16 14.16 0.00 3.51
2513 3284 5.886960 AGCATATTGGAAAGAGTGAACAC 57.113 39.130 0.00 0.00 0.00 3.32
2532 3303 7.651304 GTGAACACAAGGACTATATCTGAGATG 59.349 40.741 4.96 0.00 0.00 2.90
2593 3382 4.976864 TGGATATGATGTGCATTGTAGCT 58.023 39.130 0.00 0.00 38.44 3.32
2740 3530 4.823442 CAGCATCCCTACTGAATGCAAATA 59.177 41.667 9.01 0.00 40.41 1.40
3013 3804 6.293790 GGTTACTTAGACTTCGTTTGGCATTT 60.294 38.462 0.00 0.00 0.00 2.32
3054 3845 0.037419 CCCCACCGGCTTTTCAAATG 60.037 55.000 0.00 0.00 0.00 2.32
3457 4251 6.646267 TGTTATAGTTGGTGGGAATACAGTC 58.354 40.000 0.00 0.00 0.00 3.51
3476 4270 1.140052 TCCGCCGTGATGGTAATGAAT 59.860 47.619 0.00 0.00 41.21 2.57
3526 4320 3.066064 TGTTTCACATTGGTGTTCCTTCG 59.934 43.478 0.00 0.00 45.45 3.79
3571 4365 5.657474 TGTGTTGTAGATCCTCGATTAACC 58.343 41.667 0.00 0.00 0.00 2.85
4131 4953 7.062322 TGCCACTACCAAATCTGAATGATATT 58.938 34.615 0.00 0.00 34.45 1.28
4359 5189 9.458727 CATGCTTTATATCAGGGAGAAACATAT 57.541 33.333 0.00 0.00 0.00 1.78
4439 5269 5.337169 GGACTCACAGAATCATAGGGATAGC 60.337 48.000 0.00 0.00 34.28 2.97
4491 5321 0.888736 TCCACCATGCACCTTGAACG 60.889 55.000 0.00 0.00 0.00 3.95
4610 5440 3.533606 ACGATTGAGCTCTGCTTACAT 57.466 42.857 16.19 0.00 39.88 2.29
4728 5561 5.053978 ACCTAGGGATGAATCAAATGACC 57.946 43.478 14.81 0.00 0.00 4.02
4782 5615 7.696992 TGAACAGGTTAATTCCTTATGTTCC 57.303 36.000 11.38 0.00 37.29 3.62
4783 5616 7.235079 TGAACAGGTTAATTCCTTATGTTCCA 58.765 34.615 11.38 0.01 37.29 3.53
4784 5617 7.726291 TGAACAGGTTAATTCCTTATGTTCCAA 59.274 33.333 11.38 0.00 37.29 3.53
4801 5640 8.899427 ATGTTCCAATCTAGTTCTCATATGTG 57.101 34.615 1.90 0.00 0.00 3.21
4839 5678 9.931698 TTATATCATTATATGTACTCCCTCCGT 57.068 33.333 0.00 0.00 30.72 4.69
4840 5679 8.840200 ATATCATTATATGTACTCCCTCCGTT 57.160 34.615 0.00 0.00 0.00 4.44
4841 5680 6.585695 TCATTATATGTACTCCCTCCGTTC 57.414 41.667 0.00 0.00 0.00 3.95
4842 5681 5.479375 TCATTATATGTACTCCCTCCGTTCC 59.521 44.000 0.00 0.00 0.00 3.62
4843 5682 3.614568 ATATGTACTCCCTCCGTTCCT 57.385 47.619 0.00 0.00 0.00 3.36
4844 5683 4.736611 ATATGTACTCCCTCCGTTCCTA 57.263 45.455 0.00 0.00 0.00 2.94
4845 5684 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
4846 5685 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
4847 5686 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
4848 5687 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
4849 5688 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
4850 5689 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
4851 5690 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
4852 5691 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4853 5692 5.011840 ACTCCCTCCGTTCCTAAATATAAGC 59.988 44.000 0.00 0.00 0.00 3.09
4854 5693 4.285260 TCCCTCCGTTCCTAAATATAAGCC 59.715 45.833 0.00 0.00 0.00 4.35
4855 5694 4.286291 CCCTCCGTTCCTAAATATAAGCCT 59.714 45.833 0.00 0.00 0.00 4.58
4856 5695 5.221864 CCCTCCGTTCCTAAATATAAGCCTT 60.222 44.000 0.00 0.00 0.00 4.35
4857 5696 6.296803 CCTCCGTTCCTAAATATAAGCCTTT 58.703 40.000 0.00 0.00 0.00 3.11
4858 5697 6.771267 CCTCCGTTCCTAAATATAAGCCTTTT 59.229 38.462 0.00 0.00 0.00 2.27
4859 5698 7.284716 CCTCCGTTCCTAAATATAAGCCTTTTT 59.715 37.037 0.00 0.00 0.00 1.94
4860 5699 9.333724 CTCCGTTCCTAAATATAAGCCTTTTTA 57.666 33.333 0.00 0.00 0.00 1.52
4861 5700 9.333724 TCCGTTCCTAAATATAAGCCTTTTTAG 57.666 33.333 1.71 1.71 33.47 1.85
4862 5701 9.333724 CCGTTCCTAAATATAAGCCTTTTTAGA 57.666 33.333 8.15 0.00 34.90 2.10
4876 5715 8.554490 AGCCTTTTTAGAGACTCTAATATGGA 57.446 34.615 30.76 15.97 38.60 3.41
4877 5716 8.425703 AGCCTTTTTAGAGACTCTAATATGGAC 58.574 37.037 30.76 24.75 38.60 4.02
4878 5717 8.425703 GCCTTTTTAGAGACTCTAATATGGACT 58.574 37.037 30.76 5.62 38.60 3.85
4885 5724 8.780846 AGAGACTCTAATATGGACTACATACG 57.219 38.462 2.19 0.00 44.41 3.06
4886 5725 7.825270 AGAGACTCTAATATGGACTACATACGG 59.175 40.741 2.19 0.00 44.41 4.02
4887 5726 7.687388 AGACTCTAATATGGACTACATACGGA 58.313 38.462 0.00 0.00 44.41 4.69
4888 5727 7.825270 AGACTCTAATATGGACTACATACGGAG 59.175 40.741 0.00 0.00 44.41 4.63
4889 5728 6.374894 ACTCTAATATGGACTACATACGGAGC 59.625 42.308 0.00 0.00 44.41 4.70
4890 5729 6.243148 TCTAATATGGACTACATACGGAGCA 58.757 40.000 0.00 0.00 44.41 4.26
4891 5730 5.801531 AATATGGACTACATACGGAGCAA 57.198 39.130 0.00 0.00 44.41 3.91
4892 5731 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
4893 5732 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
4894 5733 3.592059 TGGACTACATACGGAGCAAAAC 58.408 45.455 0.00 0.00 0.00 2.43
4895 5734 2.601763 GGACTACATACGGAGCAAAACG 59.398 50.000 0.00 0.00 0.00 3.60
4896 5735 3.504863 GACTACATACGGAGCAAAACGA 58.495 45.455 0.00 0.00 0.00 3.85
4897 5736 3.508762 ACTACATACGGAGCAAAACGAG 58.491 45.455 0.00 0.00 0.00 4.18
4898 5737 2.450609 ACATACGGAGCAAAACGAGT 57.549 45.000 0.00 0.00 0.00 4.18
4899 5738 2.066262 ACATACGGAGCAAAACGAGTG 58.934 47.619 0.00 0.00 0.00 3.51
4900 5739 2.288579 ACATACGGAGCAAAACGAGTGA 60.289 45.455 0.00 0.00 0.00 3.41
4901 5740 2.512485 TACGGAGCAAAACGAGTGAA 57.488 45.000 0.00 0.00 0.00 3.18
4902 5741 1.878953 ACGGAGCAAAACGAGTGAAT 58.121 45.000 0.00 0.00 0.00 2.57
4903 5742 1.798813 ACGGAGCAAAACGAGTGAATC 59.201 47.619 0.00 0.00 0.00 2.52
4904 5743 2.069273 CGGAGCAAAACGAGTGAATCT 58.931 47.619 0.00 0.00 0.00 2.40
4905 5744 2.159787 CGGAGCAAAACGAGTGAATCTG 60.160 50.000 0.00 0.00 0.00 2.90
4906 5745 2.413371 GGAGCAAAACGAGTGAATCTGC 60.413 50.000 0.00 0.00 0.00 4.26
4907 5746 2.221169 AGCAAAACGAGTGAATCTGCA 58.779 42.857 0.00 0.00 0.00 4.41
4908 5747 2.031682 AGCAAAACGAGTGAATCTGCAC 60.032 45.455 0.00 0.00 39.05 4.57
4943 5782 7.627298 ATCTATGTACATCCGTATGTAGTCC 57.373 40.000 12.68 0.00 46.68 3.85
4944 5783 4.761235 ATGTACATCCGTATGTAGTCCG 57.239 45.455 1.41 0.00 46.68 4.79
4945 5784 3.544684 TGTACATCCGTATGTAGTCCGT 58.455 45.455 0.46 0.00 46.68 4.69
4946 5785 4.702831 TGTACATCCGTATGTAGTCCGTA 58.297 43.478 0.46 0.00 46.68 4.02
4947 5786 5.308014 TGTACATCCGTATGTAGTCCGTAT 58.692 41.667 0.46 0.00 46.68 3.06
4948 5787 5.764686 TGTACATCCGTATGTAGTCCGTATT 59.235 40.000 0.46 0.00 46.68 1.89
4949 5788 5.117355 ACATCCGTATGTAGTCCGTATTG 57.883 43.478 0.00 0.00 44.66 1.90
4950 5789 4.823442 ACATCCGTATGTAGTCCGTATTGA 59.177 41.667 0.00 0.00 44.66 2.57
4951 5790 5.300034 ACATCCGTATGTAGTCCGTATTGAA 59.700 40.000 0.00 0.00 44.66 2.69
4952 5791 5.833406 TCCGTATGTAGTCCGTATTGAAA 57.167 39.130 0.00 0.00 0.00 2.69
4953 5792 6.395426 TCCGTATGTAGTCCGTATTGAAAT 57.605 37.500 0.00 0.00 0.00 2.17
4954 5793 6.441274 TCCGTATGTAGTCCGTATTGAAATC 58.559 40.000 0.00 0.00 0.00 2.17
4955 5794 6.263842 TCCGTATGTAGTCCGTATTGAAATCT 59.736 38.462 0.00 0.00 0.00 2.40
4956 5795 6.581542 CCGTATGTAGTCCGTATTGAAATCTC 59.418 42.308 0.00 0.00 0.00 2.75
4957 5796 7.361127 CGTATGTAGTCCGTATTGAAATCTCT 58.639 38.462 0.00 0.00 0.00 3.10
4958 5797 8.501580 CGTATGTAGTCCGTATTGAAATCTCTA 58.498 37.037 0.00 0.00 0.00 2.43
4962 5801 9.582431 TGTAGTCCGTATTGAAATCTCTAAAAG 57.418 33.333 0.00 0.00 0.00 2.27
4963 5802 9.032420 GTAGTCCGTATTGAAATCTCTAAAAGG 57.968 37.037 0.00 0.00 0.00 3.11
4964 5803 7.048512 AGTCCGTATTGAAATCTCTAAAAGGG 58.951 38.462 0.00 0.00 0.00 3.95
4965 5804 5.820947 TCCGTATTGAAATCTCTAAAAGGGC 59.179 40.000 0.00 0.00 0.00 5.19
4966 5805 5.823045 CCGTATTGAAATCTCTAAAAGGGCT 59.177 40.000 0.00 0.00 0.00 5.19
4967 5806 6.318900 CCGTATTGAAATCTCTAAAAGGGCTT 59.681 38.462 0.00 0.00 0.00 4.35
4968 5807 7.497909 CCGTATTGAAATCTCTAAAAGGGCTTA 59.502 37.037 0.00 0.00 0.00 3.09
4969 5808 9.057089 CGTATTGAAATCTCTAAAAGGGCTTAT 57.943 33.333 0.00 0.00 0.00 1.73
4979 5818 9.780186 TCTCTAAAAGGGCTTATATTTAGAAGC 57.220 33.333 8.14 8.14 46.62 3.86
4986 5825 5.148651 GCTTATATTTAGAAGCGGAGGGA 57.851 43.478 1.59 0.00 40.18 4.20
5006 6051 7.015389 GGAGGGAGTACTTGTTAGTTGCTATAT 59.985 40.741 0.00 0.00 35.78 0.86
5007 6052 8.320338 AGGGAGTACTTGTTAGTTGCTATATT 57.680 34.615 0.00 0.00 35.78 1.28
5008 6053 9.430399 AGGGAGTACTTGTTAGTTGCTATATTA 57.570 33.333 0.00 0.00 35.78 0.98
5009 6054 9.473640 GGGAGTACTTGTTAGTTGCTATATTAC 57.526 37.037 0.00 0.00 35.78 1.89
5102 6158 3.356529 ACCAGTTCCAGCTTTGGATAG 57.643 47.619 0.00 0.00 37.87 2.08
5177 6328 5.693104 TCGGAGTAACTGTTTGTGAATGTAC 59.307 40.000 0.00 0.00 0.00 2.90
5179 6330 5.464389 GGAGTAACTGTTTGTGAATGTACGT 59.536 40.000 0.00 0.00 0.00 3.57
5180 6331 6.281848 AGTAACTGTTTGTGAATGTACGTG 57.718 37.500 0.00 0.00 0.00 4.49
5188 6339 8.312896 TGTTTGTGAATGTACGTGTATGTATT 57.687 30.769 0.00 0.00 0.00 1.89
5343 6494 6.077993 TCTATCACCTGTAATACCATCTGCT 58.922 40.000 0.00 0.00 0.00 4.24
5376 6527 5.104735 ACCTTCAGTTGATCCAGAAGTATCC 60.105 44.000 0.00 0.00 36.60 2.59
5391 6542 7.201821 CCAGAAGTATCCCCATATGAAACAAAC 60.202 40.741 3.65 0.00 0.00 2.93
5466 6617 1.684983 CCTCATCCAATTGACATGCCC 59.315 52.381 7.12 0.00 0.00 5.36
5529 6680 5.938125 GCACTATTACCAGGTTTCTCTTTCA 59.062 40.000 0.00 0.00 0.00 2.69
5579 6731 7.862372 GTGTCATTCTCTGTGCTTTGAAAATAA 59.138 33.333 0.00 0.00 0.00 1.40
5598 6750 5.936686 ATAAATTCTGGATCATGACGCAG 57.063 39.130 0.00 3.11 0.00 5.18
5660 6812 2.795231 AGCATGATAACTGCACCTGT 57.205 45.000 0.00 0.00 42.15 4.00
5667 6819 0.250124 TAACTGCACCTGTGAACCCG 60.250 55.000 0.51 0.00 0.00 5.28
5716 6868 5.288804 GCACATAAGTTTGTTGGTGTTGAT 58.711 37.500 0.00 0.00 0.00 2.57
5730 6882 5.076182 TGGTGTTGATAATCCTCAAGCAAA 58.924 37.500 0.00 0.00 35.88 3.68
5868 7020 6.761731 TTTTCTGAACATTTACCATTTGCG 57.238 33.333 0.00 0.00 0.00 4.85
5869 7021 5.446143 TTCTGAACATTTACCATTTGCGT 57.554 34.783 0.00 0.00 0.00 5.24
5888 7199 3.728864 GCGTGCTCTTGATTGGTTATGTG 60.729 47.826 0.00 0.00 0.00 3.21
5924 7235 9.793259 AGTTCTGTCACTCCTTTTAATTGATTA 57.207 29.630 0.00 0.00 0.00 1.75
6066 7377 2.041686 GGCTCTGTCCTCGTCGAGT 61.042 63.158 20.37 0.00 0.00 4.18
6068 7379 1.984321 GCTCTGTCCTCGTCGAGTCC 61.984 65.000 20.37 10.84 0.00 3.85
6128 7439 1.455773 GGGCCTGAATTACCTGGGC 60.456 63.158 0.84 7.74 45.65 5.36
6171 7482 2.637872 TCAGAGATTCTGGGAACGGTTT 59.362 45.455 6.27 0.00 44.39 3.27
6216 7527 2.283532 AGGCGTGAGGTCTCTGCT 60.284 61.111 12.72 0.00 34.01 4.24
6274 7586 3.055530 ACACCAAATTTTGTCAAGCCACA 60.056 39.130 8.26 0.00 0.00 4.17
6276 7588 3.197549 ACCAAATTTTGTCAAGCCACAGT 59.802 39.130 8.26 0.00 0.00 3.55
6367 7682 0.706433 AAGGGGGTTCAGATGCACAT 59.294 50.000 0.00 0.00 0.00 3.21
6381 7696 1.271488 TGCACATGTGATGCTCTTCCA 60.271 47.619 29.80 11.18 43.77 3.53
6436 7751 5.508200 TGTTGACCATTTGAGGTAACAAC 57.492 39.130 9.48 9.48 43.38 3.32
6447 7762 6.867519 TTGAGGTAACAACTGATAGATCCA 57.132 37.500 0.00 0.00 41.41 3.41
6452 7767 8.567285 AGGTAACAACTGATAGATCCAAAAAG 57.433 34.615 0.00 0.00 41.41 2.27
6465 7789 0.238289 CAAAAAGCATCCACGACGCT 59.762 50.000 0.00 0.00 30.35 5.07
6471 7795 1.407618 AGCATCCACGACGCTAATACA 59.592 47.619 0.00 0.00 26.10 2.29
6502 7826 5.183331 AGTGTTGCTAATCTTAGTCGACTGA 59.817 40.000 28.12 19.13 33.32 3.41
6503 7827 5.513495 GTGTTGCTAATCTTAGTCGACTGAG 59.487 44.000 26.80 26.80 33.32 3.35
6504 7828 5.414765 TGTTGCTAATCTTAGTCGACTGAGA 59.585 40.000 33.88 33.88 41.83 3.27
6505 7829 5.487153 TGCTAATCTTAGTCGACTGAGAC 57.513 43.478 34.32 23.99 40.68 3.36
6515 7839 4.175787 GTCGACTGAGACTTGGTTATGT 57.824 45.455 8.70 0.00 38.09 2.29
6516 7840 4.167268 GTCGACTGAGACTTGGTTATGTC 58.833 47.826 8.70 0.00 38.09 3.06
6517 7841 4.079970 TCGACTGAGACTTGGTTATGTCT 58.920 43.478 0.00 0.00 42.18 3.41
6518 7842 4.523173 TCGACTGAGACTTGGTTATGTCTT 59.477 41.667 0.00 0.00 40.30 3.01
6519 7843 5.708697 TCGACTGAGACTTGGTTATGTCTTA 59.291 40.000 0.00 0.00 40.30 2.10
6520 7844 6.030849 CGACTGAGACTTGGTTATGTCTTAG 58.969 44.000 11.56 11.56 43.95 2.18
6521 7845 6.919775 ACTGAGACTTGGTTATGTCTTAGT 57.080 37.500 12.59 12.59 45.17 2.24
6522 7846 7.304497 ACTGAGACTTGGTTATGTCTTAGTT 57.696 36.000 12.59 1.55 46.48 2.24
6523 7847 7.155328 ACTGAGACTTGGTTATGTCTTAGTTG 58.845 38.462 12.59 0.00 46.48 3.16
6524 7848 7.015292 ACTGAGACTTGGTTATGTCTTAGTTGA 59.985 37.037 12.59 0.00 46.48 3.18
6525 7849 7.907389 TGAGACTTGGTTATGTCTTAGTTGAT 58.093 34.615 0.00 0.00 40.30 2.57
6526 7850 7.819415 TGAGACTTGGTTATGTCTTAGTTGATG 59.181 37.037 0.00 0.00 40.30 3.07
6527 7851 6.595716 AGACTTGGTTATGTCTTAGTTGATGC 59.404 38.462 0.00 0.00 37.89 3.91
6528 7852 6.476378 ACTTGGTTATGTCTTAGTTGATGCT 58.524 36.000 0.00 0.00 0.00 3.79
6529 7853 7.620880 ACTTGGTTATGTCTTAGTTGATGCTA 58.379 34.615 0.00 0.00 0.00 3.49
6530 7854 8.267894 ACTTGGTTATGTCTTAGTTGATGCTAT 58.732 33.333 0.00 0.00 0.00 2.97
6531 7855 9.764363 CTTGGTTATGTCTTAGTTGATGCTATA 57.236 33.333 0.00 0.00 0.00 1.31
6550 7874 8.171164 TGCTATATATATCCGTGAGATCTTGG 57.829 38.462 0.00 0.00 36.33 3.61
6560 7884 3.465871 GTGAGATCTTGGCTGGAGATTC 58.534 50.000 0.00 2.76 34.13 2.52
6573 7897 4.320202 GCTGGAGATTCGTGCAAAACTTTA 60.320 41.667 0.00 0.00 0.00 1.85
6575 7899 6.403200 GCTGGAGATTCGTGCAAAACTTTATA 60.403 38.462 0.00 0.00 0.00 0.98
6576 7900 7.624360 TGGAGATTCGTGCAAAACTTTATAT 57.376 32.000 0.00 0.00 0.00 0.86
6577 7901 8.050778 TGGAGATTCGTGCAAAACTTTATATT 57.949 30.769 0.00 0.00 0.00 1.28
6578 7902 8.519526 TGGAGATTCGTGCAAAACTTTATATTT 58.480 29.630 0.00 0.00 0.00 1.40
6579 7903 9.997482 GGAGATTCGTGCAAAACTTTATATTTA 57.003 29.630 0.00 0.00 0.00 1.40
6581 7905 9.503427 AGATTCGTGCAAAACTTTATATTTAGC 57.497 29.630 0.00 0.00 0.00 3.09
6582 7906 8.628882 ATTCGTGCAAAACTTTATATTTAGCC 57.371 30.769 0.00 0.00 0.00 3.93
6639 7973 1.602377 ACTTGGTTAAGTCGCACAAGC 59.398 47.619 0.00 0.00 43.53 4.01
6640 7974 1.601903 CTTGGTTAAGTCGCACAAGCA 59.398 47.619 0.00 0.00 42.27 3.91
6641 7975 1.225855 TGGTTAAGTCGCACAAGCAG 58.774 50.000 0.00 0.00 42.27 4.24
6642 7976 1.202592 TGGTTAAGTCGCACAAGCAGA 60.203 47.619 0.00 0.00 42.27 4.26
6643 7977 1.461127 GGTTAAGTCGCACAAGCAGAG 59.539 52.381 0.00 0.00 42.27 3.35
6644 7978 1.136224 GTTAAGTCGCACAAGCAGAGC 60.136 52.381 0.00 0.00 42.27 4.09
6699 8142 3.272574 AGCACAGGTGATACTTGATGG 57.727 47.619 3.10 0.00 0.00 3.51
6738 8198 3.070734 ACATGTTCAAGAGCAGACTGAGT 59.929 43.478 6.65 0.00 0.00 3.41
6753 8213 5.599999 GACTGAGTAGTCCATTATGGTGT 57.400 43.478 11.39 2.45 46.14 4.16
6755 8215 5.023452 ACTGAGTAGTCCATTATGGTGTGA 58.977 41.667 11.39 0.00 39.03 3.58
6757 8217 5.023452 TGAGTAGTCCATTATGGTGTGACT 58.977 41.667 11.39 9.53 39.03 3.41
6758 8218 5.127194 TGAGTAGTCCATTATGGTGTGACTC 59.873 44.000 20.44 20.44 39.03 3.36
6759 8219 5.023452 AGTAGTCCATTATGGTGTGACTCA 58.977 41.667 11.39 0.00 39.03 3.41
6761 8221 5.028549 AGTCCATTATGGTGTGACTCATC 57.971 43.478 11.39 0.00 39.03 2.92
6762 8222 4.471025 AGTCCATTATGGTGTGACTCATCA 59.529 41.667 11.39 0.00 41.73 3.07
6764 8224 5.237996 GTCCATTATGGTGTGACTCATCATG 59.762 44.000 11.39 0.00 46.10 3.07
6765 8225 4.023450 CCATTATGGTGTGACTCATCATGC 60.023 45.833 12.48 0.00 46.10 4.06
6766 8226 1.660167 ATGGTGTGACTCATCATGCG 58.340 50.000 2.50 0.00 45.07 4.73
6768 8228 1.709147 GGTGTGACTCATCATGCGGC 61.709 60.000 0.00 0.00 37.14 6.53
6769 8229 1.020861 GTGTGACTCATCATGCGGCA 61.021 55.000 4.58 4.58 37.14 5.69
6783 8243 2.110213 GGCACGAGTGGTTCACCA 59.890 61.111 5.32 0.00 45.30 4.17
6791 8251 4.454948 TGGTTCACCAGCAAGACG 57.545 55.556 0.00 0.00 42.01 4.18
6792 8252 1.826709 TGGTTCACCAGCAAGACGA 59.173 52.632 0.00 0.00 42.01 4.20
6793 8253 0.249868 TGGTTCACCAGCAAGACGAG 60.250 55.000 0.00 0.00 42.01 4.18
6794 8254 0.951040 GGTTCACCAGCAAGACGAGG 60.951 60.000 0.00 0.00 35.64 4.63
6795 8255 0.951040 GTTCACCAGCAAGACGAGGG 60.951 60.000 0.00 0.00 0.00 4.30
6796 8256 1.118965 TTCACCAGCAAGACGAGGGA 61.119 55.000 0.00 0.00 0.00 4.20
6797 8257 1.118965 TCACCAGCAAGACGAGGGAA 61.119 55.000 0.00 0.00 0.00 3.97
6798 8258 0.951040 CACCAGCAAGACGAGGGAAC 60.951 60.000 0.00 0.00 0.00 3.62
6828 8289 5.428496 TCAGCACTGAAATCTCAACAAAG 57.572 39.130 0.00 0.00 36.53 2.77
6846 8307 6.300354 ACAAAGATTTGAGTACCAAAGTCG 57.700 37.500 12.07 5.16 46.72 4.18
6855 8316 2.007608 GTACCAAAGTCGCTTCATCCC 58.992 52.381 0.00 0.00 0.00 3.85
6858 8319 1.533625 CAAAGTCGCTTCATCCCCAA 58.466 50.000 0.00 0.00 0.00 4.12
6874 8335 5.136068 TCCCCAATGAAAGGCACATATTA 57.864 39.130 0.00 0.00 0.00 0.98
6887 8348 9.643693 AAAGGCACATATTATCTTCAACTTTTG 57.356 29.630 0.00 0.00 0.00 2.44
6888 8349 7.260603 AGGCACATATTATCTTCAACTTTTGC 58.739 34.615 0.00 0.00 0.00 3.68
6889 8350 6.476706 GGCACATATTATCTTCAACTTTTGCC 59.523 38.462 0.00 0.00 36.78 4.52
6891 8352 7.631377 GCACATATTATCTTCAACTTTTGCCCT 60.631 37.037 0.00 0.00 0.00 5.19
6892 8353 7.703621 CACATATTATCTTCAACTTTTGCCCTG 59.296 37.037 0.00 0.00 0.00 4.45
6893 8354 7.615365 ACATATTATCTTCAACTTTTGCCCTGA 59.385 33.333 0.00 0.00 0.00 3.86
6906 8368 3.726557 TGCCCTGAGATTCAAGAACAT 57.273 42.857 0.00 0.00 0.00 2.71
6907 8369 4.038271 TGCCCTGAGATTCAAGAACATT 57.962 40.909 0.00 0.00 0.00 2.71
6936 8398 9.463443 GCTGTTCTGTTTTCATATTTTGTTACT 57.537 29.630 0.00 0.00 0.00 2.24
6997 8596 4.898370 GTGGAACTCACAGATTATTTCGC 58.102 43.478 0.00 0.00 45.39 4.70
6998 8597 4.391830 GTGGAACTCACAGATTATTTCGCA 59.608 41.667 0.00 0.00 45.39 5.10
6999 8598 4.631377 TGGAACTCACAGATTATTTCGCAG 59.369 41.667 0.00 0.00 0.00 5.18
7000 8599 4.631813 GGAACTCACAGATTATTTCGCAGT 59.368 41.667 0.00 0.00 0.00 4.40
7002 8601 6.019479 GGAACTCACAGATTATTTCGCAGTAG 60.019 42.308 0.00 0.00 0.00 2.57
7004 8603 7.096884 ACTCACAGATTATTTCGCAGTAGTA 57.903 36.000 0.00 0.00 0.00 1.82
7005 8604 7.544622 ACTCACAGATTATTTCGCAGTAGTAA 58.455 34.615 0.00 0.00 0.00 2.24
7006 8605 7.702772 ACTCACAGATTATTTCGCAGTAGTAAG 59.297 37.037 0.00 0.00 0.00 2.34
7007 8606 6.475727 TCACAGATTATTTCGCAGTAGTAAGC 59.524 38.462 0.00 0.00 0.00 3.09
7008 8607 6.255670 CACAGATTATTTCGCAGTAGTAAGCA 59.744 38.462 0.00 0.00 0.00 3.91
7009 8608 6.986817 ACAGATTATTTCGCAGTAGTAAGCAT 59.013 34.615 0.00 0.00 0.00 3.79
7010 8609 7.169982 ACAGATTATTTCGCAGTAGTAAGCATC 59.830 37.037 0.00 0.00 0.00 3.91
7011 8610 7.169813 CAGATTATTTCGCAGTAGTAAGCATCA 59.830 37.037 0.00 0.00 0.00 3.07
7012 8611 7.875041 AGATTATTTCGCAGTAGTAAGCATCAT 59.125 33.333 0.00 0.00 0.00 2.45
7013 8612 5.663795 ATTTCGCAGTAGTAAGCATCATG 57.336 39.130 0.00 0.00 0.00 3.07
7014 8613 4.385358 TTCGCAGTAGTAAGCATCATGA 57.615 40.909 0.00 0.00 0.00 3.07
7019 8641 4.269603 GCAGTAGTAAGCATCATGAGTGTG 59.730 45.833 0.09 0.00 0.00 3.82
7025 8647 4.494350 AAGCATCATGAGTGTGTTTCAC 57.506 40.909 0.09 0.00 46.46 3.18
7031 8653 7.031372 GCATCATGAGTGTGTTTCACATAAAT 58.969 34.615 0.09 0.00 46.32 1.40
7036 8658 7.809546 TGAGTGTGTTTCACATAAATACCAA 57.190 32.000 5.88 0.00 46.32 3.67
7056 8678 5.183904 ACCAAGATCAAGTAATTCAAGTGCC 59.816 40.000 0.00 0.00 0.00 5.01
7088 8710 8.816640 AAAACAAAAGTATTCAAGTGCCATAG 57.183 30.769 0.00 0.00 0.00 2.23
7090 8712 7.944729 ACAAAAGTATTCAAGTGCCATAGAT 57.055 32.000 0.00 0.00 0.00 1.98
7094 8716 8.854614 AAAGTATTCAAGTGCCATAGATATCC 57.145 34.615 0.00 0.00 0.00 2.59
7112 8738 6.893005 AGATATCCTATGCAGTTCCTACCTAC 59.107 42.308 0.00 0.00 0.00 3.18
7113 8739 4.259933 TCCTATGCAGTTCCTACCTACA 57.740 45.455 0.00 0.00 0.00 2.74
7114 8740 4.215908 TCCTATGCAGTTCCTACCTACAG 58.784 47.826 0.00 0.00 0.00 2.74
7115 8741 3.961408 CCTATGCAGTTCCTACCTACAGT 59.039 47.826 0.00 0.00 0.00 3.55
7116 8742 5.103813 TCCTATGCAGTTCCTACCTACAGTA 60.104 44.000 0.00 0.00 0.00 2.74
7117 8743 5.241949 CCTATGCAGTTCCTACCTACAGTAG 59.758 48.000 0.00 0.00 46.99 2.57
7127 8753 6.192773 TCCTACCTACAGTAGTTACAATGCT 58.807 40.000 6.84 0.00 46.15 3.79
7129 8755 4.504858 ACCTACAGTAGTTACAATGCTGC 58.495 43.478 6.84 0.00 0.00 5.25
7133 8759 5.407407 ACAGTAGTTACAATGCTGCTAGT 57.593 39.130 0.00 0.00 0.00 2.57
7138 8764 3.515502 AGTTACAATGCTGCTAGTCCTCA 59.484 43.478 0.00 0.00 0.00 3.86
7170 8809 2.229792 AGATTTCAGTTTTGAGCGGCA 58.770 42.857 1.45 0.00 34.15 5.69
7171 8810 2.227388 AGATTTCAGTTTTGAGCGGCAG 59.773 45.455 1.45 0.00 34.15 4.85
7172 8811 0.030638 TTTCAGTTTTGAGCGGCAGC 59.969 50.000 0.00 0.00 45.58 5.25
7173 8812 1.795170 TTCAGTTTTGAGCGGCAGCC 61.795 55.000 4.82 0.00 46.67 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.044352 CCGAAACCCATCCCCCAC 60.044 66.667 0.00 0.00 0.00 4.61
37 38 0.845543 TAACCGAAACCCATCCCCCA 60.846 55.000 0.00 0.00 0.00 4.96
38 39 0.106868 CTAACCGAAACCCATCCCCC 60.107 60.000 0.00 0.00 0.00 5.40
39 40 0.913924 TCTAACCGAAACCCATCCCC 59.086 55.000 0.00 0.00 0.00 4.81
40 41 2.438392 AGATCTAACCGAAACCCATCCC 59.562 50.000 0.00 0.00 0.00 3.85
41 42 3.118371 ACAGATCTAACCGAAACCCATCC 60.118 47.826 0.00 0.00 0.00 3.51
42 43 3.871594 CACAGATCTAACCGAAACCCATC 59.128 47.826 0.00 0.00 0.00 3.51
43 44 3.263425 ACACAGATCTAACCGAAACCCAT 59.737 43.478 0.00 0.00 0.00 4.00
101 112 1.905839 ATACCCACATCCACATCCCA 58.094 50.000 0.00 0.00 0.00 4.37
203 220 1.536418 CCTGTCCCTCCCACTGACA 60.536 63.158 0.00 0.00 37.45 3.58
237 254 4.572571 TGTCCCCACACGCCAACC 62.573 66.667 0.00 0.00 0.00 3.77
238 255 2.517402 TTGTCCCCACACGCCAAC 60.517 61.111 0.00 0.00 29.76 3.77
239 256 2.203280 CTTGTCCCCACACGCCAA 60.203 61.111 0.00 0.00 29.76 4.52
240 257 4.263572 CCTTGTCCCCACACGCCA 62.264 66.667 0.00 0.00 29.76 5.69
241 258 3.901797 CTCCTTGTCCCCACACGCC 62.902 68.421 0.00 0.00 29.76 5.68
242 259 2.358737 CTCCTTGTCCCCACACGC 60.359 66.667 0.00 0.00 29.76 5.34
243 260 1.293498 CTCTCCTTGTCCCCACACG 59.707 63.158 0.00 0.00 29.76 4.49
244 261 1.003233 GCTCTCCTTGTCCCCACAC 60.003 63.158 0.00 0.00 29.76 3.82
245 262 0.842030 ATGCTCTCCTTGTCCCCACA 60.842 55.000 0.00 0.00 0.00 4.17
246 263 0.107459 GATGCTCTCCTTGTCCCCAC 60.107 60.000 0.00 0.00 0.00 4.61
247 264 0.252881 AGATGCTCTCCTTGTCCCCA 60.253 55.000 0.00 0.00 0.00 4.96
248 265 0.179936 CAGATGCTCTCCTTGTCCCC 59.820 60.000 0.00 0.00 0.00 4.81
249 266 0.179936 CCAGATGCTCTCCTTGTCCC 59.820 60.000 0.00 0.00 0.00 4.46
250 267 0.463474 GCCAGATGCTCTCCTTGTCC 60.463 60.000 0.00 0.00 36.87 4.02
251 268 0.809241 CGCCAGATGCTCTCCTTGTC 60.809 60.000 0.00 0.00 38.05 3.18
252 269 1.220206 CGCCAGATGCTCTCCTTGT 59.780 57.895 0.00 0.00 38.05 3.16
253 270 1.523258 CCGCCAGATGCTCTCCTTG 60.523 63.158 0.00 0.00 38.05 3.61
254 271 2.906458 CCGCCAGATGCTCTCCTT 59.094 61.111 0.00 0.00 38.05 3.36
255 272 3.859414 GCCGCCAGATGCTCTCCT 61.859 66.667 0.00 0.00 38.05 3.69
256 273 3.397613 AAGCCGCCAGATGCTCTCC 62.398 63.158 0.00 0.00 36.66 3.71
257 274 1.886777 GAAGCCGCCAGATGCTCTC 60.887 63.158 0.00 0.00 36.66 3.20
258 275 2.188994 GAAGCCGCCAGATGCTCT 59.811 61.111 0.00 0.00 36.66 4.09
259 276 2.124983 TGAAGCCGCCAGATGCTC 60.125 61.111 0.00 0.00 36.66 4.26
260 277 2.124819 CTGAAGCCGCCAGATGCT 60.125 61.111 0.00 0.00 40.17 3.79
261 278 3.885521 GCTGAAGCCGCCAGATGC 61.886 66.667 1.21 0.00 33.65 3.91
262 279 3.570638 CGCTGAAGCCGCCAGATG 61.571 66.667 1.21 0.00 37.91 2.90
263 280 4.845580 CCGCTGAAGCCGCCAGAT 62.846 66.667 1.21 0.00 37.91 2.90
271 288 3.577313 GATTCCCGCCGCTGAAGC 61.577 66.667 0.00 0.00 37.78 3.86
272 289 2.978452 ATCGATTCCCGCCGCTGAAG 62.978 60.000 0.00 0.00 38.37 3.02
273 290 2.971428 GATCGATTCCCGCCGCTGAA 62.971 60.000 0.00 0.00 38.37 3.02
274 291 3.499929 GATCGATTCCCGCCGCTGA 62.500 63.158 0.00 0.00 38.37 4.26
275 292 3.038417 GATCGATTCCCGCCGCTG 61.038 66.667 0.00 0.00 38.37 5.18
276 293 4.301027 GGATCGATTCCCGCCGCT 62.301 66.667 0.00 0.00 38.75 5.52
279 296 3.925090 ACCGGATCGATTCCCGCC 61.925 66.667 17.67 5.16 44.07 6.13
280 297 2.661866 CACCGGATCGATTCCCGC 60.662 66.667 17.67 0.00 44.07 6.13
281 298 1.299926 GACACCGGATCGATTCCCG 60.300 63.158 9.46 16.48 42.06 5.14
282 299 0.249489 CAGACACCGGATCGATTCCC 60.249 60.000 9.46 0.00 42.06 3.97
283 300 0.249489 CCAGACACCGGATCGATTCC 60.249 60.000 9.46 1.43 41.59 3.01
284 301 0.876342 GCCAGACACCGGATCGATTC 60.876 60.000 9.46 0.00 0.00 2.52
285 302 1.144057 GCCAGACACCGGATCGATT 59.856 57.895 9.46 0.00 0.00 3.34
286 303 1.758514 AGCCAGACACCGGATCGAT 60.759 57.895 9.46 0.00 0.00 3.59
287 304 2.362503 AGCCAGACACCGGATCGA 60.363 61.111 9.46 0.00 0.00 3.59
288 305 2.202797 CAGCCAGACACCGGATCG 60.203 66.667 9.46 0.00 0.00 3.69
335 352 8.372877 TCTTCTCTCCTCTTCAATCAACTAAT 57.627 34.615 0.00 0.00 0.00 1.73
340 357 6.939163 CCTTTTCTTCTCTCCTCTTCAATCAA 59.061 38.462 0.00 0.00 0.00 2.57
341 358 6.471146 CCTTTTCTTCTCTCCTCTTCAATCA 58.529 40.000 0.00 0.00 0.00 2.57
342 359 5.353956 GCCTTTTCTTCTCTCCTCTTCAATC 59.646 44.000 0.00 0.00 0.00 2.67
343 360 5.222007 TGCCTTTTCTTCTCTCCTCTTCAAT 60.222 40.000 0.00 0.00 0.00 2.57
357 374 2.803133 GCTTTCGCCTTTGCCTTTTCTT 60.803 45.455 0.00 0.00 0.00 2.52
362 501 2.644992 CGCTTTCGCCTTTGCCTT 59.355 55.556 0.00 0.00 0.00 4.35
363 502 3.365265 CCGCTTTCGCCTTTGCCT 61.365 61.111 0.00 0.00 0.00 4.75
364 503 2.598619 GATCCGCTTTCGCCTTTGCC 62.599 60.000 0.00 0.00 0.00 4.52
365 504 1.226407 GATCCGCTTTCGCCTTTGC 60.226 57.895 0.00 0.00 0.00 3.68
366 505 1.305219 TGGATCCGCTTTCGCCTTTG 61.305 55.000 7.39 0.00 0.00 2.77
397 536 1.726853 CACCTGACTGATTCCCGAAC 58.273 55.000 0.00 0.00 0.00 3.95
408 547 2.119832 AGTACCCCGCACCTGACT 59.880 61.111 0.00 0.00 0.00 3.41
425 564 0.965363 GGGCTGCTTTTTCCCGATCA 60.965 55.000 0.00 0.00 0.00 2.92
432 571 1.581447 CGAGGTGGGCTGCTTTTTC 59.419 57.895 0.00 0.00 0.00 2.29
441 580 4.530857 CCATCGACCGAGGTGGGC 62.531 72.222 0.00 0.00 45.45 5.36
442 581 2.134287 ATCCATCGACCGAGGTGGG 61.134 63.158 10.91 4.65 44.64 4.61
443 582 1.068083 CATCCATCGACCGAGGTGG 59.932 63.158 0.00 0.00 46.41 4.61
444 583 1.068083 CCATCCATCGACCGAGGTG 59.932 63.158 0.00 0.00 0.00 4.00
445 584 0.470080 ATCCATCCATCGACCGAGGT 60.470 55.000 0.00 0.00 0.00 3.85
446 585 0.037882 CATCCATCCATCGACCGAGG 60.038 60.000 0.00 0.00 0.00 4.63
447 586 0.037882 CCATCCATCCATCGACCGAG 60.038 60.000 0.00 0.00 0.00 4.63
448 587 0.469144 TCCATCCATCCATCGACCGA 60.469 55.000 0.00 0.00 0.00 4.69
449 588 0.319900 GTCCATCCATCCATCGACCG 60.320 60.000 0.00 0.00 0.00 4.79
450 589 0.758734 TGTCCATCCATCCATCGACC 59.241 55.000 0.00 0.00 0.00 4.79
451 590 1.875576 GCTGTCCATCCATCCATCGAC 60.876 57.143 0.00 0.00 0.00 4.20
452 591 0.394192 GCTGTCCATCCATCCATCGA 59.606 55.000 0.00 0.00 0.00 3.59
453 592 0.947660 CGCTGTCCATCCATCCATCG 60.948 60.000 0.00 0.00 0.00 3.84
454 593 0.394192 TCGCTGTCCATCCATCCATC 59.606 55.000 0.00 0.00 0.00 3.51
455 594 0.839277 TTCGCTGTCCATCCATCCAT 59.161 50.000 0.00 0.00 0.00 3.41
456 595 0.839277 ATTCGCTGTCCATCCATCCA 59.161 50.000 0.00 0.00 0.00 3.41
457 596 1.202687 TGATTCGCTGTCCATCCATCC 60.203 52.381 0.00 0.00 0.00 3.51
521 666 3.059529 GGACGTTGCTCTTGTTTCTTCTC 60.060 47.826 0.00 0.00 0.00 2.87
536 681 3.420839 AAAGCAAACTGAAGGACGTTG 57.579 42.857 0.00 0.00 0.00 4.10
537 682 4.450082 AAAAAGCAAACTGAAGGACGTT 57.550 36.364 0.00 0.00 0.00 3.99
566 711 3.708734 CGACGACGCCGGCTTTTT 61.709 61.111 26.68 5.83 42.92 1.94
572 717 4.517703 GAGAGACGACGACGCCGG 62.518 72.222 8.74 0.00 43.96 6.13
576 721 1.322338 GAAGAGAGAGAGACGACGACG 59.678 57.143 5.58 5.58 45.75 5.12
577 722 1.322338 CGAAGAGAGAGAGACGACGAC 59.678 57.143 0.00 0.00 0.00 4.34
578 723 1.067706 ACGAAGAGAGAGAGACGACGA 60.068 52.381 0.00 0.00 0.00 4.20
579 724 1.059979 CACGAAGAGAGAGAGACGACG 59.940 57.143 0.00 0.00 0.00 5.12
580 725 1.395608 CCACGAAGAGAGAGAGACGAC 59.604 57.143 0.00 0.00 0.00 4.34
581 726 1.728068 CCACGAAGAGAGAGAGACGA 58.272 55.000 0.00 0.00 0.00 4.20
582 727 0.098025 GCCACGAAGAGAGAGAGACG 59.902 60.000 0.00 0.00 0.00 4.18
583 728 0.454196 GGCCACGAAGAGAGAGAGAC 59.546 60.000 0.00 0.00 0.00 3.36
584 729 1.027255 CGGCCACGAAGAGAGAGAGA 61.027 60.000 2.24 0.00 44.60 3.10
586 731 3.592070 CGGCCACGAAGAGAGAGA 58.408 61.111 2.24 0.00 44.60 3.10
600 745 3.134127 ATTTTGGCTCGGCTCGGC 61.134 61.111 0.00 0.00 0.00 5.54
601 746 2.040544 ACATTTTGGCTCGGCTCGG 61.041 57.895 0.00 0.00 0.00 4.63
602 747 1.135315 CACATTTTGGCTCGGCTCG 59.865 57.895 0.00 0.00 0.00 5.03
604 749 1.074775 TCCACATTTTGGCTCGGCT 59.925 52.632 0.00 0.00 46.47 5.52
679 861 1.475280 AGATCGGATCGTTCGTTTGGA 59.525 47.619 12.08 0.00 31.85 3.53
761 949 4.753662 CATGCCTGCCTGCTGGGT 62.754 66.667 15.64 0.00 37.43 4.51
789 977 8.006298 TCTTTGAGCTATTCTTTTGTCCAAAA 57.994 30.769 5.20 5.20 37.90 2.44
801 989 8.645487 CAGCATTTCTTTTTCTTTGAGCTATTC 58.355 33.333 0.00 0.00 0.00 1.75
804 992 6.449698 CCAGCATTTCTTTTTCTTTGAGCTA 58.550 36.000 0.00 0.00 0.00 3.32
806 994 4.450080 CCCAGCATTTCTTTTTCTTTGAGC 59.550 41.667 0.00 0.00 0.00 4.26
807 995 4.450080 GCCCAGCATTTCTTTTTCTTTGAG 59.550 41.667 0.00 0.00 0.00 3.02
808 996 4.379652 GCCCAGCATTTCTTTTTCTTTGA 58.620 39.130 0.00 0.00 0.00 2.69
809 997 3.499537 GGCCCAGCATTTCTTTTTCTTTG 59.500 43.478 0.00 0.00 0.00 2.77
862 1498 2.190488 GAGTGGAAGTGGAGGCCCAG 62.190 65.000 0.00 0.00 44.55 4.45
924 1560 4.338710 TGGAAAAGGGGGCGACGG 62.339 66.667 0.00 0.00 0.00 4.79
1433 2080 2.287977 TCGAAGGGAGACAGTGAAGA 57.712 50.000 0.00 0.00 0.00 2.87
1512 2159 2.826428 ACCATCGTATGCTTGCAGTAG 58.174 47.619 0.87 0.00 0.00 2.57
1571 2218 7.436118 TGTGGTTATTATACCCATAGAACGTC 58.564 38.462 0.00 0.00 37.39 4.34
1573 2220 8.717821 CATTGTGGTTATTATACCCATAGAACG 58.282 37.037 0.00 0.00 37.39 3.95
1592 2239 5.525378 GGAGAACAAGTATCTAGCATTGTGG 59.475 44.000 0.00 0.00 36.09 4.17
1594 2241 5.426833 AGGGAGAACAAGTATCTAGCATTGT 59.573 40.000 0.00 0.00 37.47 2.71
1595 2242 5.923204 AGGGAGAACAAGTATCTAGCATTG 58.077 41.667 0.00 0.00 0.00 2.82
1624 2272 6.556974 AGTACATAGAACTTTAGGGGGTTC 57.443 41.667 0.00 0.00 41.24 3.62
1636 2284 5.006746 GCCACTGCAACATAGTACATAGAAC 59.993 44.000 0.00 0.00 37.47 3.01
1686 2334 6.294731 GGATCCAATTTGCACACCCTTATATC 60.295 42.308 6.95 0.00 0.00 1.63
1837 2486 6.932901 TCTTTTTACACGACTATACAACGG 57.067 37.500 0.00 0.00 0.00 4.44
1839 2488 8.378421 GGACATCTTTTTACACGACTATACAAC 58.622 37.037 0.00 0.00 0.00 3.32
1931 2597 0.823356 TCAAGTGCTTCAAGGGGTGC 60.823 55.000 0.00 0.00 0.00 5.01
1934 2600 1.612726 CCTCTCAAGTGCTTCAAGGGG 60.613 57.143 0.00 0.00 0.00 4.79
2127 2874 4.763793 AGAAAATGATGCAACAGCACTACT 59.236 37.500 2.25 0.00 41.80 2.57
2178 2934 8.785468 AACAAATATTTGCACTTTTGAATTGC 57.215 26.923 24.82 0.00 41.79 3.56
2184 2940 7.408123 TGCAGAAACAAATATTTGCACTTTTG 58.592 30.769 24.82 19.79 41.79 2.44
2334 3099 6.795114 GTCACATTCACAAAACTATAACCGTG 59.205 38.462 0.00 0.00 0.00 4.94
2352 3117 8.846943 TTATCATTAGTGTCAACTGTCACATT 57.153 30.769 9.26 0.00 37.19 2.71
2417 3186 5.209818 AGAAGTGGACACTACGAAATTCA 57.790 39.130 5.25 0.00 41.58 2.57
2422 3191 5.970317 TCAATAGAAGTGGACACTACGAA 57.030 39.130 5.25 0.00 41.58 3.85
2513 3284 6.932947 TGCATCATCTCAGATATAGTCCTTG 58.067 40.000 0.00 0.00 0.00 3.61
2810 3600 2.752903 AGGTGGTATTAAAAAGCTGCCG 59.247 45.455 0.00 0.00 0.00 5.69
2913 3704 8.594550 TCTGAGATGCTTACTAGGTTAAACTTT 58.405 33.333 0.00 0.00 0.00 2.66
2915 3706 7.719871 TCTGAGATGCTTACTAGGTTAAACT 57.280 36.000 0.00 0.00 0.00 2.66
3013 3804 7.018449 TGGGGAATGATAACCATGATCTATTGA 59.982 37.037 0.00 0.00 35.24 2.57
3054 3845 4.994852 TGGTTACTGCACTGTAATGTTCTC 59.005 41.667 2.28 0.00 35.27 2.87
3457 4251 1.593196 ATTCATTACCATCACGGCGG 58.407 50.000 13.24 0.00 39.03 6.13
3526 4320 7.084486 CACAACTAAAAGCCTTTCAATCCTAC 58.916 38.462 0.00 0.00 0.00 3.18
3571 4365 2.703798 CCCCTTCACATGCCTTGCG 61.704 63.158 0.00 0.00 0.00 4.85
3885 4679 3.687698 ACACGGCAACCATATAGTGAAAC 59.312 43.478 0.19 0.00 34.16 2.78
4131 4953 9.581289 TTCTTTTTGGAAAGGATATAGTTGTGA 57.419 29.630 0.00 0.00 42.05 3.58
4359 5189 5.636123 TCCCCAAAAGTCACTAAGCAATAA 58.364 37.500 0.00 0.00 0.00 1.40
4439 5269 1.064166 AGGGAAGTGAATGCAGATGGG 60.064 52.381 0.00 0.00 0.00 4.00
4441 5271 4.701651 TGTTTAGGGAAGTGAATGCAGATG 59.298 41.667 0.00 0.00 0.00 2.90
4491 5321 2.743183 GCACATATGGGGACTGACTGAC 60.743 54.545 7.18 0.00 0.00 3.51
4728 5561 5.835257 ACATCAATTAAATCAATCGCCTGG 58.165 37.500 0.00 0.00 0.00 4.45
4761 5594 8.116026 AGATTGGAACATAAGGAATTAACCTGT 58.884 33.333 0.00 0.00 38.25 4.00
4780 5613 8.311395 AGAACACATATGAGAACTAGATTGGA 57.689 34.615 10.38 0.00 0.00 3.53
4781 5614 7.655328 GGAGAACACATATGAGAACTAGATTGG 59.345 40.741 10.38 0.00 0.00 3.16
4782 5615 8.200120 TGGAGAACACATATGAGAACTAGATTG 58.800 37.037 10.38 0.00 0.00 2.67
4783 5616 8.311395 TGGAGAACACATATGAGAACTAGATT 57.689 34.615 10.38 0.00 0.00 2.40
4784 5617 7.904558 TGGAGAACACATATGAGAACTAGAT 57.095 36.000 10.38 0.00 0.00 1.98
4819 5658 5.480772 AGGAACGGAGGGAGTACATATAATG 59.519 44.000 0.00 0.00 0.00 1.90
4820 5659 5.652324 AGGAACGGAGGGAGTACATATAAT 58.348 41.667 0.00 0.00 0.00 1.28
4821 5660 5.070823 AGGAACGGAGGGAGTACATATAA 57.929 43.478 0.00 0.00 0.00 0.98
4822 5661 4.736611 AGGAACGGAGGGAGTACATATA 57.263 45.455 0.00 0.00 0.00 0.86
4823 5662 3.614568 AGGAACGGAGGGAGTACATAT 57.385 47.619 0.00 0.00 0.00 1.78
4824 5663 4.524802 TTAGGAACGGAGGGAGTACATA 57.475 45.455 0.00 0.00 0.00 2.29
4825 5664 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
4826 5665 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
4827 5666 7.530426 TTATATTTAGGAACGGAGGGAGTAC 57.470 40.000 0.00 0.00 0.00 2.73
4828 5667 6.210185 GCTTATATTTAGGAACGGAGGGAGTA 59.790 42.308 0.00 0.00 0.00 2.59
4829 5668 5.011840 GCTTATATTTAGGAACGGAGGGAGT 59.988 44.000 0.00 0.00 0.00 3.85
4830 5669 5.480205 GCTTATATTTAGGAACGGAGGGAG 58.520 45.833 0.00 0.00 0.00 4.30
4831 5670 4.285260 GGCTTATATTTAGGAACGGAGGGA 59.715 45.833 0.00 0.00 0.00 4.20
4832 5671 4.286291 AGGCTTATATTTAGGAACGGAGGG 59.714 45.833 0.00 0.00 0.00 4.30
4833 5672 5.485209 AGGCTTATATTTAGGAACGGAGG 57.515 43.478 0.00 0.00 0.00 4.30
4834 5673 7.803279 AAAAGGCTTATATTTAGGAACGGAG 57.197 36.000 0.00 0.00 0.00 4.63
4835 5674 9.333724 CTAAAAAGGCTTATATTTAGGAACGGA 57.666 33.333 16.77 0.00 33.69 4.69
4836 5675 9.333724 TCTAAAAAGGCTTATATTTAGGAACGG 57.666 33.333 21.19 4.97 36.48 4.44
4850 5689 8.993424 TCCATATTAGAGTCTCTAAAAAGGCTT 58.007 33.333 23.01 9.83 41.72 4.35
4851 5690 8.425703 GTCCATATTAGAGTCTCTAAAAAGGCT 58.574 37.037 23.01 10.45 41.72 4.58
4852 5691 8.425703 AGTCCATATTAGAGTCTCTAAAAAGGC 58.574 37.037 23.01 17.98 41.72 4.35
4859 5698 9.872721 CGTATGTAGTCCATATTAGAGTCTCTA 57.127 37.037 5.41 5.41 38.29 2.43
4860 5699 7.825270 CCGTATGTAGTCCATATTAGAGTCTCT 59.175 40.741 7.68 7.68 38.29 3.10
4861 5700 7.823310 TCCGTATGTAGTCCATATTAGAGTCTC 59.177 40.741 0.00 0.00 38.29 3.36
4862 5701 7.687388 TCCGTATGTAGTCCATATTAGAGTCT 58.313 38.462 0.00 0.00 38.29 3.24
4863 5702 7.414319 GCTCCGTATGTAGTCCATATTAGAGTC 60.414 44.444 0.00 0.00 38.29 3.36
4864 5703 6.374894 GCTCCGTATGTAGTCCATATTAGAGT 59.625 42.308 0.00 0.00 38.29 3.24
4865 5704 6.374613 TGCTCCGTATGTAGTCCATATTAGAG 59.625 42.308 0.00 0.00 38.29 2.43
4866 5705 6.243148 TGCTCCGTATGTAGTCCATATTAGA 58.757 40.000 0.00 0.00 38.29 2.10
4867 5706 6.510879 TGCTCCGTATGTAGTCCATATTAG 57.489 41.667 0.00 0.00 38.29 1.73
4868 5707 6.904463 TTGCTCCGTATGTAGTCCATATTA 57.096 37.500 0.00 0.00 38.29 0.98
4869 5708 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
4870 5709 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
4871 5710 5.353938 GTTTTGCTCCGTATGTAGTCCATA 58.646 41.667 0.00 0.00 34.86 2.74
4872 5711 4.189231 GTTTTGCTCCGTATGTAGTCCAT 58.811 43.478 0.00 0.00 37.58 3.41
4873 5712 3.592059 GTTTTGCTCCGTATGTAGTCCA 58.408 45.455 0.00 0.00 0.00 4.02
4874 5713 2.601763 CGTTTTGCTCCGTATGTAGTCC 59.398 50.000 0.00 0.00 0.00 3.85
4875 5714 3.504863 TCGTTTTGCTCCGTATGTAGTC 58.495 45.455 0.00 0.00 0.00 2.59
4876 5715 3.057033 ACTCGTTTTGCTCCGTATGTAGT 60.057 43.478 0.00 0.00 0.00 2.73
4877 5716 3.303495 CACTCGTTTTGCTCCGTATGTAG 59.697 47.826 0.00 0.00 0.00 2.74
4878 5717 3.057386 TCACTCGTTTTGCTCCGTATGTA 60.057 43.478 0.00 0.00 0.00 2.29
4879 5718 2.066262 CACTCGTTTTGCTCCGTATGT 58.934 47.619 0.00 0.00 0.00 2.29
4880 5719 2.333926 TCACTCGTTTTGCTCCGTATG 58.666 47.619 0.00 0.00 0.00 2.39
4881 5720 2.736144 TCACTCGTTTTGCTCCGTAT 57.264 45.000 0.00 0.00 0.00 3.06
4882 5721 2.512485 TTCACTCGTTTTGCTCCGTA 57.488 45.000 0.00 0.00 0.00 4.02
4883 5722 1.798813 GATTCACTCGTTTTGCTCCGT 59.201 47.619 0.00 0.00 0.00 4.69
4884 5723 2.069273 AGATTCACTCGTTTTGCTCCG 58.931 47.619 0.00 0.00 0.00 4.63
4885 5724 2.413371 GCAGATTCACTCGTTTTGCTCC 60.413 50.000 0.00 0.00 0.00 4.70
4886 5725 2.224079 TGCAGATTCACTCGTTTTGCTC 59.776 45.455 0.00 0.00 0.00 4.26
4887 5726 2.031682 GTGCAGATTCACTCGTTTTGCT 60.032 45.455 0.00 0.00 34.29 3.91
4888 5727 2.031682 AGTGCAGATTCACTCGTTTTGC 60.032 45.455 0.00 0.00 43.28 3.68
4889 5728 3.885484 AGTGCAGATTCACTCGTTTTG 57.115 42.857 0.00 0.00 43.28 2.44
4917 5756 9.339850 GGACTACATACGGATGTACATAGATAT 57.660 37.037 16.71 4.09 44.77 1.63
4918 5757 7.493645 CGGACTACATACGGATGTACATAGATA 59.506 40.741 16.71 1.75 44.77 1.98
4919 5758 6.315642 CGGACTACATACGGATGTACATAGAT 59.684 42.308 16.71 0.43 44.77 1.98
4920 5759 5.640783 CGGACTACATACGGATGTACATAGA 59.359 44.000 16.71 0.00 44.77 1.98
4921 5760 5.410746 ACGGACTACATACGGATGTACATAG 59.589 44.000 16.71 11.29 44.77 2.23
4922 5761 5.308014 ACGGACTACATACGGATGTACATA 58.692 41.667 16.71 0.00 44.77 2.29
4923 5762 4.139786 ACGGACTACATACGGATGTACAT 58.860 43.478 16.71 8.43 44.77 2.29
4924 5763 3.544684 ACGGACTACATACGGATGTACA 58.455 45.455 16.71 0.00 44.77 2.90
4925 5764 5.869753 ATACGGACTACATACGGATGTAC 57.130 43.478 16.71 8.04 44.77 2.90
4926 5765 5.997129 TCAATACGGACTACATACGGATGTA 59.003 40.000 19.32 19.32 44.77 2.29
4928 5767 5.366829 TCAATACGGACTACATACGGATG 57.633 43.478 5.94 5.94 39.16 3.51
4929 5768 6.395426 TTTCAATACGGACTACATACGGAT 57.605 37.500 0.00 0.00 31.40 4.18
4930 5769 5.833406 TTTCAATACGGACTACATACGGA 57.167 39.130 0.00 0.00 0.00 4.69
4931 5770 6.444633 AGATTTCAATACGGACTACATACGG 58.555 40.000 0.00 0.00 0.00 4.02
4932 5771 7.361127 AGAGATTTCAATACGGACTACATACG 58.639 38.462 0.00 0.00 0.00 3.06
4936 5775 9.582431 CTTTTAGAGATTTCAATACGGACTACA 57.418 33.333 0.00 0.00 0.00 2.74
4937 5776 9.032420 CCTTTTAGAGATTTCAATACGGACTAC 57.968 37.037 0.00 0.00 0.00 2.73
4938 5777 8.202137 CCCTTTTAGAGATTTCAATACGGACTA 58.798 37.037 0.00 0.00 0.00 2.59
4939 5778 7.048512 CCCTTTTAGAGATTTCAATACGGACT 58.951 38.462 0.00 0.00 0.00 3.85
4940 5779 6.238402 GCCCTTTTAGAGATTTCAATACGGAC 60.238 42.308 0.00 0.00 0.00 4.79
4941 5780 5.820947 GCCCTTTTAGAGATTTCAATACGGA 59.179 40.000 0.00 0.00 0.00 4.69
4942 5781 5.823045 AGCCCTTTTAGAGATTTCAATACGG 59.177 40.000 0.00 0.00 0.00 4.02
4943 5782 6.927294 AGCCCTTTTAGAGATTTCAATACG 57.073 37.500 0.00 0.00 0.00 3.06
4953 5792 9.780186 GCTTCTAAATATAAGCCCTTTTAGAGA 57.220 33.333 0.00 0.00 41.80 3.10
4954 5793 8.713271 CGCTTCTAAATATAAGCCCTTTTAGAG 58.287 37.037 0.00 0.00 44.17 2.43
4955 5794 7.660208 CCGCTTCTAAATATAAGCCCTTTTAGA 59.340 37.037 0.00 0.00 44.17 2.10
4956 5795 7.660208 TCCGCTTCTAAATATAAGCCCTTTTAG 59.340 37.037 0.00 0.00 44.17 1.85
4957 5796 7.511268 TCCGCTTCTAAATATAAGCCCTTTTA 58.489 34.615 0.00 0.00 44.17 1.52
4958 5797 6.362248 TCCGCTTCTAAATATAAGCCCTTTT 58.638 36.000 0.00 0.00 44.17 2.27
4959 5798 5.937111 TCCGCTTCTAAATATAAGCCCTTT 58.063 37.500 0.00 0.00 44.17 3.11
4960 5799 5.513267 CCTCCGCTTCTAAATATAAGCCCTT 60.513 44.000 0.00 0.00 44.17 3.95
4961 5800 4.020128 CCTCCGCTTCTAAATATAAGCCCT 60.020 45.833 0.00 0.00 44.17 5.19
4962 5801 4.254492 CCTCCGCTTCTAAATATAAGCCC 58.746 47.826 0.00 0.00 44.17 5.19
4963 5802 4.020485 TCCCTCCGCTTCTAAATATAAGCC 60.020 45.833 0.00 0.00 44.17 4.35
4964 5803 5.148651 TCCCTCCGCTTCTAAATATAAGC 57.851 43.478 0.00 0.00 43.71 3.09
4965 5804 6.347859 ACTCCCTCCGCTTCTAAATATAAG 57.652 41.667 0.00 0.00 0.00 1.73
4966 5805 7.008941 AGTACTCCCTCCGCTTCTAAATATAA 58.991 38.462 0.00 0.00 0.00 0.98
4967 5806 6.550163 AGTACTCCCTCCGCTTCTAAATATA 58.450 40.000 0.00 0.00 0.00 0.86
4968 5807 5.395611 AGTACTCCCTCCGCTTCTAAATAT 58.604 41.667 0.00 0.00 0.00 1.28
4969 5808 4.801164 AGTACTCCCTCCGCTTCTAAATA 58.199 43.478 0.00 0.00 0.00 1.40
4970 5809 3.644335 AGTACTCCCTCCGCTTCTAAAT 58.356 45.455 0.00 0.00 0.00 1.40
4971 5810 3.097342 AGTACTCCCTCCGCTTCTAAA 57.903 47.619 0.00 0.00 0.00 1.85
4972 5811 2.758979 CAAGTACTCCCTCCGCTTCTAA 59.241 50.000 0.00 0.00 0.00 2.10
4973 5812 2.291411 ACAAGTACTCCCTCCGCTTCTA 60.291 50.000 0.00 0.00 0.00 2.10
4974 5813 1.187087 CAAGTACTCCCTCCGCTTCT 58.813 55.000 0.00 0.00 0.00 2.85
4975 5814 0.896226 ACAAGTACTCCCTCCGCTTC 59.104 55.000 0.00 0.00 0.00 3.86
4976 5815 1.349067 AACAAGTACTCCCTCCGCTT 58.651 50.000 0.00 0.00 0.00 4.68
4977 5816 2.100989 CTAACAAGTACTCCCTCCGCT 58.899 52.381 0.00 0.00 0.00 5.52
4978 5817 1.823610 ACTAACAAGTACTCCCTCCGC 59.176 52.381 0.00 0.00 0.00 5.54
4979 5818 3.846360 CAACTAACAAGTACTCCCTCCG 58.154 50.000 0.00 0.00 0.00 4.63
4980 5819 3.261137 AGCAACTAACAAGTACTCCCTCC 59.739 47.826 0.00 0.00 0.00 4.30
4981 5820 4.538746 AGCAACTAACAAGTACTCCCTC 57.461 45.455 0.00 0.00 0.00 4.30
4982 5821 7.916077 ATATAGCAACTAACAAGTACTCCCT 57.084 36.000 0.00 0.00 0.00 4.20
4983 5822 9.473640 GTAATATAGCAACTAACAAGTACTCCC 57.526 37.037 0.00 0.00 0.00 4.30
5148 6299 3.813166 CACAAACAGTTACTCCGATGGTT 59.187 43.478 0.00 0.00 0.00 3.67
5149 6300 3.070446 TCACAAACAGTTACTCCGATGGT 59.930 43.478 0.00 0.00 0.00 3.55
5177 6328 9.440784 ACTACAACAAAACAAAATACATACACG 57.559 29.630 0.00 0.00 0.00 4.49
5188 6339 7.651304 CAGATGCCATTACTACAACAAAACAAA 59.349 33.333 0.00 0.00 0.00 2.83
5207 6358 1.350351 AGAGGGACATATGCAGATGCC 59.650 52.381 20.90 20.37 41.18 4.40
5262 6413 3.871006 TGTCACGGTCAATCTGCAATATC 59.129 43.478 0.00 0.00 0.00 1.63
5343 6494 6.720309 TGGATCAACTGAAGGTATTTCATCA 58.280 36.000 0.00 0.00 44.48 3.07
5360 6511 6.090870 TCATATGGGGATACTTCTGGATCAA 58.909 40.000 2.13 0.00 0.00 2.57
5391 6542 9.627123 TCCCAAGTCTTGTAAAAGGATATAATG 57.373 33.333 11.61 0.00 0.00 1.90
5466 6617 4.904154 GTCAAACAATCTCCTTTTTCGTCG 59.096 41.667 0.00 0.00 0.00 5.12
5579 6731 3.272574 ACTGCGTCATGATCCAGAATT 57.727 42.857 24.02 6.86 0.00 2.17
5619 6771 6.807720 TGCTAATGTAACATTTGCAGATGTTG 59.192 34.615 34.03 21.92 46.60 3.33
5632 6784 6.038161 GGTGCAGTTATCATGCTAATGTAACA 59.962 38.462 0.00 0.00 44.17 2.41
5660 6812 1.122632 TGGGCTTACTGACGGGTTCA 61.123 55.000 0.00 0.00 0.00 3.18
5667 6819 4.270084 GCAAAAACTTTTGGGCTTACTGAC 59.730 41.667 14.92 0.00 45.73 3.51
5716 6868 4.759693 ACAATGTCGTTTGCTTGAGGATTA 59.240 37.500 0.00 0.00 0.00 1.75
5730 6882 4.917415 GCTTTATTTCTTGCACAATGTCGT 59.083 37.500 0.00 0.00 0.00 4.34
5856 7008 2.881513 TCAAGAGCACGCAAATGGTAAA 59.118 40.909 0.00 0.00 0.00 2.01
5858 7010 2.177394 TCAAGAGCACGCAAATGGTA 57.823 45.000 0.00 0.00 0.00 3.25
5863 7015 1.317613 ACCAATCAAGAGCACGCAAA 58.682 45.000 0.00 0.00 0.00 3.68
5866 7018 2.420022 ACATAACCAATCAAGAGCACGC 59.580 45.455 0.00 0.00 0.00 5.34
5867 7019 3.684305 TCACATAACCAATCAAGAGCACG 59.316 43.478 0.00 0.00 0.00 5.34
5868 7020 5.393962 GTTCACATAACCAATCAAGAGCAC 58.606 41.667 0.00 0.00 0.00 4.40
5869 7021 4.458989 GGTTCACATAACCAATCAAGAGCA 59.541 41.667 2.06 0.00 40.03 4.26
5888 7199 3.279434 AGTGACAGAACTGGTTTGGTTC 58.721 45.455 6.76 0.00 42.15 3.62
5924 7235 6.525629 CCGTATCTGACAGGGAAAGAAATAT 58.474 40.000 1.81 0.00 0.00 1.28
5925 7236 5.684030 GCCGTATCTGACAGGGAAAGAAATA 60.684 44.000 1.81 0.00 0.00 1.40
5972 7283 4.019174 TCAGAGCTCTGTACATCACATCA 58.981 43.478 36.32 15.16 44.12 3.07
6066 7377 1.351017 GAACAAGTCATGGGGTGAGGA 59.649 52.381 0.00 0.00 37.56 3.71
6068 7379 2.430465 CAGAACAAGTCATGGGGTGAG 58.570 52.381 0.00 0.00 37.56 3.51
6107 7418 0.918983 CCAGGTAATTCAGGCCCTCA 59.081 55.000 0.00 0.00 0.00 3.86
6171 7482 3.876589 GAGCCTCAACGCCCGTTCA 62.877 63.158 2.68 0.00 36.00 3.18
6216 7527 7.581213 ACAAAATGGACACTATCAAGAACAA 57.419 32.000 0.00 0.00 0.00 2.83
6274 7586 4.439057 TCTCTAAACAGAAACGCAACACT 58.561 39.130 0.00 0.00 0.00 3.55
6276 7588 4.689071 TCTCTCTAAACAGAAACGCAACA 58.311 39.130 0.00 0.00 0.00 3.33
6367 7682 1.814394 GCATGTTGGAAGAGCATCACA 59.186 47.619 0.00 0.00 37.82 3.58
6381 7696 4.837085 AGCAAGGCTCTGCATGTT 57.163 50.000 19.03 0.00 45.18 2.71
6421 7736 7.770433 TGGATCTATCAGTTGTTACCTCAAATG 59.230 37.037 0.00 0.00 42.32 2.32
6430 7745 7.994425 TGCTTTTTGGATCTATCAGTTGTTA 57.006 32.000 0.00 0.00 0.00 2.41
6436 7751 5.277683 CGTGGATGCTTTTTGGATCTATCAG 60.278 44.000 0.00 0.00 42.27 2.90
6452 7767 1.521423 GTGTATTAGCGTCGTGGATGC 59.479 52.381 1.64 1.64 44.07 3.91
6465 7789 7.601130 AGATTAGCAACACTGTTTCGTGTATTA 59.399 33.333 0.00 0.00 46.71 0.98
6471 7795 5.989777 ACTAAGATTAGCAACACTGTTTCGT 59.010 36.000 0.00 0.00 34.09 3.85
6502 7826 6.595716 GCATCAACTAAGACATAACCAAGTCT 59.404 38.462 0.00 0.00 46.45 3.24
6503 7827 6.595716 AGCATCAACTAAGACATAACCAAGTC 59.404 38.462 0.00 0.00 35.02 3.01
6504 7828 6.476378 AGCATCAACTAAGACATAACCAAGT 58.524 36.000 0.00 0.00 0.00 3.16
6505 7829 6.992063 AGCATCAACTAAGACATAACCAAG 57.008 37.500 0.00 0.00 0.00 3.61
6518 7842 9.847224 TCTCACGGATATATATAGCATCAACTA 57.153 33.333 10.05 0.00 0.00 2.24
6519 7843 8.753497 TCTCACGGATATATATAGCATCAACT 57.247 34.615 10.05 0.00 0.00 3.16
6520 7844 9.619316 GATCTCACGGATATATATAGCATCAAC 57.381 37.037 10.05 0.00 34.33 3.18
6521 7845 9.579932 AGATCTCACGGATATATATAGCATCAA 57.420 33.333 10.05 0.00 34.33 2.57
6522 7846 9.579932 AAGATCTCACGGATATATATAGCATCA 57.420 33.333 10.05 0.00 34.33 3.07
6523 7847 9.838975 CAAGATCTCACGGATATATATAGCATC 57.161 37.037 10.05 3.63 34.33 3.91
6524 7848 8.801299 CCAAGATCTCACGGATATATATAGCAT 58.199 37.037 10.05 0.00 34.33 3.79
6525 7849 7.255625 GCCAAGATCTCACGGATATATATAGCA 60.256 40.741 10.05 0.00 34.33 3.49
6526 7850 7.040062 AGCCAAGATCTCACGGATATATATAGC 60.040 40.741 9.41 0.00 34.33 2.97
6527 7851 8.296000 CAGCCAAGATCTCACGGATATATATAG 58.704 40.741 9.41 0.00 34.33 1.31
6528 7852 7.231519 CCAGCCAAGATCTCACGGATATATATA 59.768 40.741 9.41 0.00 34.33 0.86
6529 7853 6.041409 CCAGCCAAGATCTCACGGATATATAT 59.959 42.308 9.41 0.00 34.33 0.86
6530 7854 5.360999 CCAGCCAAGATCTCACGGATATATA 59.639 44.000 9.41 0.00 34.33 0.86
6531 7855 4.161189 CCAGCCAAGATCTCACGGATATAT 59.839 45.833 9.41 0.00 34.33 0.86
6538 7862 0.820226 TCTCCAGCCAAGATCTCACG 59.180 55.000 0.00 0.00 0.00 4.35
6550 7874 1.537202 AGTTTTGCACGAATCTCCAGC 59.463 47.619 0.00 0.00 0.00 4.85
6560 7884 8.460831 AAAGGCTAAATATAAAGTTTTGCACG 57.539 30.769 0.00 0.00 38.47 5.34
6602 7936 6.114187 ACCAAGTCTCAATCAAGTGACATA 57.886 37.500 0.00 0.00 35.17 2.29
6603 7937 4.978099 ACCAAGTCTCAATCAAGTGACAT 58.022 39.130 0.00 0.00 35.17 3.06
6604 7938 4.422073 ACCAAGTCTCAATCAAGTGACA 57.578 40.909 0.00 0.00 35.17 3.58
6605 7939 6.483640 ACTTAACCAAGTCTCAATCAAGTGAC 59.516 38.462 0.00 0.00 41.25 3.67
6606 7940 6.591935 ACTTAACCAAGTCTCAATCAAGTGA 58.408 36.000 0.00 0.00 41.25 3.41
6607 7941 6.867662 ACTTAACCAAGTCTCAATCAAGTG 57.132 37.500 0.00 0.00 41.25 3.16
6619 7953 3.002929 TGCTTGTGCGACTTAACCAAGT 61.003 45.455 0.00 0.00 41.48 3.16
6632 7966 0.167689 GCTTGTAGCTCTGCTTGTGC 59.832 55.000 0.00 0.00 40.44 4.57
6635 7969 1.135746 GCTTGCTTGTAGCTCTGCTTG 60.136 52.381 0.00 0.00 42.97 4.01
6636 7970 1.163554 GCTTGCTTGTAGCTCTGCTT 58.836 50.000 0.00 0.00 42.97 3.91
6637 7971 0.676151 GGCTTGCTTGTAGCTCTGCT 60.676 55.000 0.00 0.00 42.97 4.24
6639 7973 1.818642 AAGGCTTGCTTGTAGCTCTG 58.181 50.000 0.00 0.00 42.97 3.35
6640 7974 2.431454 GAAAGGCTTGCTTGTAGCTCT 58.569 47.619 0.00 0.00 42.97 4.09
6641 7975 1.470494 GGAAAGGCTTGCTTGTAGCTC 59.530 52.381 4.95 0.00 42.97 4.09
6642 7976 1.539157 GGAAAGGCTTGCTTGTAGCT 58.461 50.000 4.95 0.00 42.97 3.32
6643 7977 0.528017 GGGAAAGGCTTGCTTGTAGC 59.472 55.000 4.95 0.00 42.82 3.58
6644 7978 1.815003 CAGGGAAAGGCTTGCTTGTAG 59.185 52.381 4.95 0.00 0.00 2.74
6699 8142 4.770795 ACATGTTAATAGACAGGACAGGC 58.229 43.478 0.00 0.00 35.09 4.85
6738 8198 5.660864 TGATGAGTCACACCATAATGGACTA 59.339 40.000 0.00 0.00 40.96 2.59
6742 8202 4.023450 GCATGATGAGTCACACCATAATGG 60.023 45.833 0.00 0.00 39.49 3.16
6743 8203 4.319261 CGCATGATGAGTCACACCATAATG 60.319 45.833 0.00 4.07 37.14 1.90
6744 8204 3.811497 CGCATGATGAGTCACACCATAAT 59.189 43.478 0.00 0.00 37.14 1.28
6745 8205 3.197265 CGCATGATGAGTCACACCATAA 58.803 45.455 0.00 0.00 37.14 1.90
6746 8206 2.483538 CCGCATGATGAGTCACACCATA 60.484 50.000 0.00 0.00 37.14 2.74
6749 8209 1.709147 GCCGCATGATGAGTCACACC 61.709 60.000 0.00 0.00 37.14 4.16
6750 8210 1.020861 TGCCGCATGATGAGTCACAC 61.021 55.000 0.00 0.00 37.14 3.82
6751 8211 1.020861 GTGCCGCATGATGAGTCACA 61.021 55.000 5.50 0.00 37.14 3.58
6752 8212 1.717937 GTGCCGCATGATGAGTCAC 59.282 57.895 0.00 0.00 37.14 3.67
6753 8213 1.810853 CGTGCCGCATGATGAGTCA 60.811 57.895 6.76 0.00 39.04 3.41
6755 8215 1.520120 CTCGTGCCGCATGATGAGT 60.520 57.895 15.60 0.00 0.00 3.41
6757 8217 1.810853 CACTCGTGCCGCATGATGA 60.811 57.895 15.60 2.04 0.00 2.92
6758 8218 2.705220 CACTCGTGCCGCATGATG 59.295 61.111 15.60 11.82 0.00 3.07
6759 8219 2.512286 CCACTCGTGCCGCATGAT 60.512 61.111 15.60 4.06 0.00 2.45
6761 8221 3.027170 GAACCACTCGTGCCGCATG 62.027 63.158 6.21 6.21 0.00 4.06
6762 8222 2.742372 GAACCACTCGTGCCGCAT 60.742 61.111 0.00 0.00 0.00 4.73
6763 8223 4.228567 TGAACCACTCGTGCCGCA 62.229 61.111 0.00 0.00 0.00 5.69
6764 8224 3.712881 GTGAACCACTCGTGCCGC 61.713 66.667 0.00 0.00 0.00 6.53
6765 8225 3.041940 GGTGAACCACTCGTGCCG 61.042 66.667 0.00 0.00 34.40 5.69
6766 8226 1.961277 CTGGTGAACCACTCGTGCC 60.961 63.158 0.00 0.00 42.01 5.01
6768 8228 0.813610 TTGCTGGTGAACCACTCGTG 60.814 55.000 0.00 0.00 42.01 4.35
6769 8229 0.532862 CTTGCTGGTGAACCACTCGT 60.533 55.000 0.00 0.00 42.01 4.18
6773 8233 0.531974 TCGTCTTGCTGGTGAACCAC 60.532 55.000 0.00 0.00 42.01 4.16
6774 8234 0.249868 CTCGTCTTGCTGGTGAACCA 60.250 55.000 1.48 1.48 45.30 3.67
6775 8235 0.951040 CCTCGTCTTGCTGGTGAACC 60.951 60.000 0.00 0.00 0.00 3.62
6776 8236 0.951040 CCCTCGTCTTGCTGGTGAAC 60.951 60.000 0.00 0.00 0.00 3.18
6777 8237 1.118965 TCCCTCGTCTTGCTGGTGAA 61.119 55.000 0.00 0.00 0.00 3.18
6778 8238 1.118965 TTCCCTCGTCTTGCTGGTGA 61.119 55.000 0.00 0.00 0.00 4.02
6779 8239 0.951040 GTTCCCTCGTCTTGCTGGTG 60.951 60.000 0.00 0.00 0.00 4.17
6782 8242 0.318441 TGAGTTCCCTCGTCTTGCTG 59.682 55.000 0.00 0.00 40.85 4.41
6783 8243 1.066573 CATGAGTTCCCTCGTCTTGCT 60.067 52.381 0.00 0.00 40.85 3.91
6784 8244 1.066858 TCATGAGTTCCCTCGTCTTGC 60.067 52.381 0.00 0.00 40.85 4.01
6785 8245 3.533606 ATCATGAGTTCCCTCGTCTTG 57.466 47.619 0.09 0.00 40.85 3.02
6786 8246 3.515502 TGAATCATGAGTTCCCTCGTCTT 59.484 43.478 0.09 0.00 40.85 3.01
6787 8247 3.099905 TGAATCATGAGTTCCCTCGTCT 58.900 45.455 0.09 0.00 40.85 4.18
6788 8248 3.452474 CTGAATCATGAGTTCCCTCGTC 58.548 50.000 0.09 0.00 40.85 4.20
6789 8249 2.419297 GCTGAATCATGAGTTCCCTCGT 60.419 50.000 0.09 0.00 40.85 4.18
6790 8250 2.208431 GCTGAATCATGAGTTCCCTCG 58.792 52.381 0.09 0.00 40.85 4.63
6791 8251 2.941720 GTGCTGAATCATGAGTTCCCTC 59.058 50.000 0.09 0.00 38.27 4.30
6792 8252 2.575279 AGTGCTGAATCATGAGTTCCCT 59.425 45.455 0.09 0.00 0.00 4.20
6793 8253 2.681848 CAGTGCTGAATCATGAGTTCCC 59.318 50.000 0.09 1.39 0.00 3.97
6794 8254 3.603532 TCAGTGCTGAATCATGAGTTCC 58.396 45.455 0.09 0.00 36.53 3.62
6805 8265 5.589855 TCTTTGTTGAGATTTCAGTGCTGAA 59.410 36.000 10.26 10.26 46.72 3.02
6806 8266 5.125356 TCTTTGTTGAGATTTCAGTGCTGA 58.875 37.500 0.00 0.00 37.91 4.26
6807 8267 5.428496 TCTTTGTTGAGATTTCAGTGCTG 57.572 39.130 0.00 0.00 34.15 4.41
6826 8287 4.642429 AGCGACTTTGGTACTCAAATCTT 58.358 39.130 9.14 0.26 43.57 2.40
6828 8289 4.451096 TGAAGCGACTTTGGTACTCAAATC 59.549 41.667 9.14 8.44 43.57 2.17
6855 8316 7.944061 TGAAGATAATATGTGCCTTTCATTGG 58.056 34.615 0.00 0.00 0.00 3.16
6858 8319 8.757982 AGTTGAAGATAATATGTGCCTTTCAT 57.242 30.769 0.00 0.00 0.00 2.57
6862 8323 7.761249 GCAAAAGTTGAAGATAATATGTGCCTT 59.239 33.333 0.00 0.00 0.00 4.35
6865 8326 6.476706 GGGCAAAAGTTGAAGATAATATGTGC 59.523 38.462 0.00 0.00 0.00 4.57
6874 8335 4.104383 TCTCAGGGCAAAAGTTGAAGAT 57.896 40.909 0.00 0.00 0.00 2.40
6887 8348 3.760684 ACAATGTTCTTGAATCTCAGGGC 59.239 43.478 0.00 0.00 0.00 5.19
6888 8349 4.380233 GCACAATGTTCTTGAATCTCAGGG 60.380 45.833 0.00 0.00 0.00 4.45
6889 8350 4.458295 AGCACAATGTTCTTGAATCTCAGG 59.542 41.667 0.00 0.00 0.00 3.86
6891 8352 4.823442 ACAGCACAATGTTCTTGAATCTCA 59.177 37.500 0.00 0.00 0.00 3.27
6892 8353 5.368256 ACAGCACAATGTTCTTGAATCTC 57.632 39.130 0.00 0.00 0.00 2.75
6893 8354 5.779529 AACAGCACAATGTTCTTGAATCT 57.220 34.783 0.00 0.00 39.13 2.40
6906 8368 7.763528 ACAAAATATGAAAACAGAACAGCACAA 59.236 29.630 0.00 0.00 0.00 3.33
6907 8369 7.264221 ACAAAATATGAAAACAGAACAGCACA 58.736 30.769 0.00 0.00 0.00 4.57
6917 8379 9.959749 GAGACCAAGTAACAAAATATGAAAACA 57.040 29.630 0.00 0.00 0.00 2.83
6950 8412 1.446465 CGTGCGTGCACATTGTAAAAC 59.554 47.619 23.26 1.82 46.47 2.43
6951 8413 1.330829 TCGTGCGTGCACATTGTAAAA 59.669 42.857 23.26 0.00 46.47 1.52
6954 8553 1.856688 GTCGTGCGTGCACATTGTA 59.143 52.632 23.26 0.00 46.47 2.41
6956 8555 2.497419 CGTCGTGCGTGCACATTG 60.497 61.111 23.26 8.65 46.47 2.82
6978 8577 5.786401 ACTGCGAAATAATCTGTGAGTTC 57.214 39.130 0.00 0.00 0.00 3.01
6985 8584 6.828502 TGCTTACTACTGCGAAATAATCTG 57.171 37.500 0.00 0.00 0.00 2.90
6988 8587 7.657354 TCATGATGCTTACTACTGCGAAATAAT 59.343 33.333 0.00 0.00 0.00 1.28
6989 8588 6.983890 TCATGATGCTTACTACTGCGAAATAA 59.016 34.615 0.00 0.00 0.00 1.40
6990 8589 6.512297 TCATGATGCTTACTACTGCGAAATA 58.488 36.000 0.00 0.00 0.00 1.40
6992 8591 4.754322 TCATGATGCTTACTACTGCGAAA 58.246 39.130 0.00 0.00 0.00 3.46
6993 8592 4.142160 ACTCATGATGCTTACTACTGCGAA 60.142 41.667 0.00 0.00 0.00 4.70
6994 8593 3.381590 ACTCATGATGCTTACTACTGCGA 59.618 43.478 0.00 0.00 0.00 5.10
6995 8594 3.488678 CACTCATGATGCTTACTACTGCG 59.511 47.826 0.00 0.00 0.00 5.18
6996 8595 4.269603 CACACTCATGATGCTTACTACTGC 59.730 45.833 0.00 0.00 0.00 4.40
6997 8596 5.414360 ACACACTCATGATGCTTACTACTG 58.586 41.667 0.00 0.00 0.00 2.74
6998 8597 5.667539 ACACACTCATGATGCTTACTACT 57.332 39.130 0.00 0.00 0.00 2.57
6999 8598 6.368791 TGAAACACACTCATGATGCTTACTAC 59.631 38.462 0.00 0.00 0.00 2.73
7000 8599 6.368791 GTGAAACACACTCATGATGCTTACTA 59.631 38.462 0.00 0.00 45.13 1.82
7002 8601 5.049474 TGTGAAACACACTCATGATGCTTAC 60.049 40.000 0.00 0.00 45.67 2.34
7004 8603 3.884693 TGTGAAACACACTCATGATGCTT 59.115 39.130 0.00 0.00 45.67 3.91
7005 8604 3.479489 TGTGAAACACACTCATGATGCT 58.521 40.909 0.00 0.00 45.67 3.79
7006 8605 3.902261 TGTGAAACACACTCATGATGC 57.098 42.857 0.00 0.00 45.67 3.91
7031 8653 6.374333 GGCACTTGAATTACTTGATCTTGGTA 59.626 38.462 0.00 0.00 0.00 3.25
7036 8658 5.189180 GGAGGCACTTGAATTACTTGATCT 58.811 41.667 0.00 0.00 41.55 2.75
7046 8668 3.181423 TGTTTTAGGGGAGGCACTTGAAT 60.181 43.478 0.00 0.00 41.55 2.57
7056 8678 8.082242 CACTTGAATACTTTTGTTTTAGGGGAG 58.918 37.037 0.00 0.00 0.00 4.30
7088 8710 6.663953 TGTAGGTAGGAACTGCATAGGATATC 59.336 42.308 0.00 0.00 44.97 1.63
7090 8712 5.960704 TGTAGGTAGGAACTGCATAGGATA 58.039 41.667 0.00 0.00 44.97 2.59
7093 8715 3.961408 ACTGTAGGTAGGAACTGCATAGG 59.039 47.826 0.00 0.00 44.97 2.57
7094 8716 6.320494 CTACTGTAGGTAGGAACTGCATAG 57.680 45.833 6.95 0.00 44.97 2.23
7112 8738 4.806247 GGACTAGCAGCATTGTAACTACTG 59.194 45.833 0.00 0.00 0.00 2.74
7113 8739 4.712337 AGGACTAGCAGCATTGTAACTACT 59.288 41.667 0.00 0.00 0.00 2.57
7114 8740 5.012328 AGGACTAGCAGCATTGTAACTAC 57.988 43.478 0.00 0.00 0.00 2.73
7115 8741 4.709886 TGAGGACTAGCAGCATTGTAACTA 59.290 41.667 0.00 0.00 0.00 2.24
7116 8742 3.515502 TGAGGACTAGCAGCATTGTAACT 59.484 43.478 0.00 0.00 0.00 2.24
7117 8743 3.861840 TGAGGACTAGCAGCATTGTAAC 58.138 45.455 0.00 0.00 0.00 2.50
7127 8753 3.173151 TGGTGAGATTTGAGGACTAGCA 58.827 45.455 0.00 0.00 0.00 3.49
7129 8755 6.042638 TCTTTGGTGAGATTTGAGGACTAG 57.957 41.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.