Multiple sequence alignment - TraesCS6D01G378200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G378200 chr6D 100.000 3597 0 0 2443 6039 460719681 460723277 0.000000e+00 6643.0
1 TraesCS6D01G378200 chr6D 100.000 2068 0 0 1 2068 460717239 460719306 0.000000e+00 3819.0
2 TraesCS6D01G378200 chr6D 99.804 511 1 0 1 511 425915067 425914557 0.000000e+00 939.0
3 TraesCS6D01G378200 chr6D 100.000 508 0 0 1 508 460704612 460705119 0.000000e+00 939.0
4 TraesCS6D01G378200 chr6D 99.804 509 1 0 1 509 443172394 443171886 0.000000e+00 935.0
5 TraesCS6D01G378200 chr6D 94.366 71 4 0 3348 3418 460720505 460720575 6.400000e-20 110.0
6 TraesCS6D01G378200 chr6D 94.366 71 4 0 3267 3337 460720586 460720656 6.400000e-20 110.0
7 TraesCS6D01G378200 chr6B 92.945 1956 87 26 3267 5198 701888859 701890787 0.000000e+00 2800.0
8 TraesCS6D01G378200 chr6B 88.986 1607 109 25 509 2068 701886247 701887832 0.000000e+00 1925.0
9 TraesCS6D01G378200 chr6B 92.362 995 52 9 2444 3418 701887939 701888929 0.000000e+00 1395.0
10 TraesCS6D01G378200 chr6B 83.306 617 47 24 5199 5799 701890820 701891396 8.970000e-143 518.0
11 TraesCS6D01G378200 chr6B 95.775 71 3 0 3267 3337 701888940 701889010 1.380000e-21 115.0
12 TraesCS6D01G378200 chr6B 95.652 69 3 0 3348 3416 701888778 701888846 1.780000e-20 111.0
13 TraesCS6D01G378200 chr6A 90.131 1297 51 25 3234 4480 606977780 606979049 0.000000e+00 1615.0
14 TraesCS6D01G378200 chr6A 91.390 1115 67 11 851 1951 606975079 606976178 0.000000e+00 1500.0
15 TraesCS6D01G378200 chr6A 92.317 820 32 12 2444 3236 606976849 606977664 0.000000e+00 1136.0
16 TraesCS6D01G378200 chr6A 87.883 652 31 21 4711 5334 606979345 606979976 0.000000e+00 723.0
17 TraesCS6D01G378200 chr6A 96.104 154 6 0 4488 4641 606979178 606979331 1.000000e-62 252.0
18 TraesCS6D01G378200 chr6A 97.183 71 2 0 3267 3337 606977915 606977985 2.960000e-23 121.0
19 TraesCS6D01G378200 chr6A 92.000 75 3 2 3345 3418 606977809 606977881 1.070000e-17 102.0
20 TraesCS6D01G378200 chr3D 87.739 1044 82 23 3331 4349 507064557 507063535 0.000000e+00 1177.0
21 TraesCS6D01G378200 chr3D 89.613 568 49 5 3784 4350 507112914 507112356 0.000000e+00 713.0
22 TraesCS6D01G378200 chr3D 83.588 524 35 18 2762 3242 507065126 507064611 1.540000e-120 444.0
23 TraesCS6D01G378200 chr3D 84.106 453 51 12 4751 5198 507112234 507111798 9.360000e-113 418.0
24 TraesCS6D01G378200 chr3D 90.823 316 19 2 854 1163 507044503 507044192 1.210000e-111 414.0
25 TraesCS6D01G378200 chr3D 91.549 71 6 0 3267 3337 507064540 507064470 1.390000e-16 99.0
26 TraesCS6D01G378200 chr3D 100.000 32 0 0 864 895 507044542 507044511 6.540000e-05 60.2
27 TraesCS6D01G378200 chr3D 97.059 34 1 0 5491 5524 507042575 507042542 2.350000e-04 58.4
28 TraesCS6D01G378200 chr3D 94.737 38 1 1 5488 5524 507109705 507109668 2.350000e-04 58.4
29 TraesCS6D01G378200 chr2D 99.805 513 1 0 1 513 418869470 418869982 0.000000e+00 942.0
30 TraesCS6D01G378200 chr2D 99.804 510 1 0 1 510 56466300 56466809 0.000000e+00 937.0
31 TraesCS6D01G378200 chr2D 84.615 234 25 8 5565 5795 26456109 26456334 7.880000e-54 222.0
32 TraesCS6D01G378200 chr1D 100.000 508 0 0 1 508 77577503 77578010 0.000000e+00 939.0
33 TraesCS6D01G378200 chr5D 99.804 509 1 0 1 509 49991775 49992283 0.000000e+00 935.0
34 TraesCS6D01G378200 chr5D 99.804 509 1 0 1 509 418119877 418119369 0.000000e+00 935.0
35 TraesCS6D01G378200 chr5D 99.804 509 1 0 1 509 447446555 447446047 0.000000e+00 935.0
36 TraesCS6D01G378200 chr5D 82.833 233 35 3 5565 5795 22868018 22867789 2.850000e-48 204.0
37 TraesCS6D01G378200 chr3A 91.627 418 29 5 3933 4350 645394415 645394004 1.890000e-159 573.0
38 TraesCS6D01G378200 chr3A 81.536 612 67 22 4755 5337 645393870 645393276 4.260000e-126 462.0
39 TraesCS6D01G378200 chr3A 88.690 336 25 3 854 1176 645392856 645392521 1.220000e-106 398.0
40 TraesCS6D01G378200 chr3A 87.536 345 21 6 854 1176 645150231 645149887 4.420000e-101 379.0
41 TraesCS6D01G378200 chr3A 80.984 305 36 16 5591 5880 699835600 699835897 7.880000e-54 222.0
42 TraesCS6D01G378200 chr3A 80.496 282 38 8 5604 5875 531665786 531665512 3.690000e-47 200.0
43 TraesCS6D01G378200 chr3A 90.385 52 2 1 847 895 645392915 645392864 1.400000e-06 65.8
44 TraesCS6D01G378200 chr3A 94.737 38 1 1 5488 5524 645390916 645390879 2.350000e-04 58.4
45 TraesCS6D01G378200 chr3B 90.909 418 28 3 3933 4350 669462439 669462032 2.460000e-153 553.0
46 TraesCS6D01G378200 chr3B 88.596 342 20 3 854 1176 669445184 669444843 1.220000e-106 398.0
47 TraesCS6D01G378200 chr3B 87.324 284 34 2 3563 3845 669510163 669509881 2.100000e-84 324.0
48 TraesCS6D01G378200 chr3B 83.824 204 25 7 5592 5795 706835996 706835801 2.870000e-43 187.0
49 TraesCS6D01G378200 chr3B 92.683 82 5 1 3838 3918 669462589 669462508 3.820000e-22 117.0
50 TraesCS6D01G378200 chr2A 92.832 279 12 4 4065 4343 701774582 701774312 1.220000e-106 398.0
51 TraesCS6D01G378200 chr1A 92.857 224 11 1 3973 4196 571933586 571933368 2.720000e-83 320.0
52 TraesCS6D01G378200 chr1A 97.619 126 3 0 3973 4098 53900882 53900757 3.670000e-52 217.0
53 TraesCS6D01G378200 chr4B 82.203 354 31 16 5547 5875 638357260 638357606 5.960000e-70 276.0
54 TraesCS6D01G378200 chr2B 88.938 226 14 3 3973 4198 80026842 80026628 9.980000e-68 268.0
55 TraesCS6D01G378200 chr4D 84.651 215 28 3 5581 5795 481176839 481177048 6.130000e-50 209.0
56 TraesCS6D01G378200 chr4D 77.352 287 43 17 5581 5861 230471248 230471518 3.770000e-32 150.0
57 TraesCS6D01G378200 chr7B 82.203 236 30 8 5566 5795 485095536 485095765 6.180000e-45 193.0
58 TraesCS6D01G378200 chr5A 100.000 31 0 0 5491 5521 510161340 510161370 2.350000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G378200 chr6D 460717239 460723277 6038 False 2670.500000 6643 97.183000 1 6039 4 chr6D.!!$F2 6038
1 TraesCS6D01G378200 chr6D 425914557 425915067 510 True 939.000000 939 99.804000 1 511 1 chr6D.!!$R1 510
2 TraesCS6D01G378200 chr6D 460704612 460705119 507 False 939.000000 939 100.000000 1 508 1 chr6D.!!$F1 507
3 TraesCS6D01G378200 chr6D 443171886 443172394 508 True 935.000000 935 99.804000 1 509 1 chr6D.!!$R2 508
4 TraesCS6D01G378200 chr6B 701886247 701891396 5149 False 1144.000000 2800 91.504333 509 5799 6 chr6B.!!$F1 5290
5 TraesCS6D01G378200 chr6A 606975079 606979976 4897 False 778.428571 1615 92.429714 851 5334 7 chr6A.!!$F1 4483
6 TraesCS6D01G378200 chr3D 507063535 507065126 1591 True 573.333333 1177 87.625333 2762 4349 3 chr3D.!!$R2 1587
7 TraesCS6D01G378200 chr3D 507109668 507112914 3246 True 396.466667 713 89.485333 3784 5524 3 chr3D.!!$R3 1740
8 TraesCS6D01G378200 chr2D 418869470 418869982 512 False 942.000000 942 99.805000 1 513 1 chr2D.!!$F3 512
9 TraesCS6D01G378200 chr2D 56466300 56466809 509 False 937.000000 937 99.804000 1 510 1 chr2D.!!$F2 509
10 TraesCS6D01G378200 chr1D 77577503 77578010 507 False 939.000000 939 100.000000 1 508 1 chr1D.!!$F1 507
11 TraesCS6D01G378200 chr5D 49991775 49992283 508 False 935.000000 935 99.804000 1 509 1 chr5D.!!$F1 508
12 TraesCS6D01G378200 chr5D 418119369 418119877 508 True 935.000000 935 99.804000 1 509 1 chr5D.!!$R2 508
13 TraesCS6D01G378200 chr5D 447446047 447446555 508 True 935.000000 935 99.804000 1 509 1 chr5D.!!$R3 508
14 TraesCS6D01G378200 chr3A 645390879 645394415 3536 True 311.440000 573 89.395000 847 5524 5 chr3A.!!$R3 4677
15 TraesCS6D01G378200 chr3B 669462032 669462589 557 True 335.000000 553 91.796000 3838 4350 2 chr3B.!!$R4 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 709 0.104304 CGGGCCATATATAGCGGGTC 59.896 60.0 4.39 0.0 0.0 4.46 F
709 710 0.104304 GGGCCATATATAGCGGGTCG 59.896 60.0 4.39 0.0 0.0 4.79 F
1579 1641 0.551396 GGAGGTACAGGGGAAATGGG 59.449 60.0 0.00 0.0 0.0 4.00 F
2544 2793 0.817634 CTTGGCTTCCCGTGAACACA 60.818 55.0 5.80 0.0 0.0 3.72 F
3614 4125 2.225255 GAGTGAAAGAAGCTGCAACTCC 59.775 50.0 1.02 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2198 0.110238 TTGTCTCGCGATTTTGCAGC 60.110 50.0 10.36 0.00 34.15 5.25 R
2526 2775 0.394488 TTGTGTTCACGGGAAGCCAA 60.394 50.0 0.00 3.74 32.62 4.52 R
3112 3406 1.258445 GGAGGAGGACAAGAAGCCGA 61.258 60.0 0.00 0.00 0.00 5.54 R
3807 4321 1.089920 CAATTCTCCTCAACCCTGCG 58.910 55.0 0.00 0.00 0.00 5.18 R
5531 8599 0.323629 TCACCCGGGCTTAGAAACTG 59.676 55.0 24.08 8.18 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
535 536 4.222847 GGGATCGGTCTCGTGGCC 62.223 72.222 0.00 0.00 37.69 5.36
552 553 4.181010 CGGACCTGGCCATGGAGG 62.181 72.222 23.24 17.15 41.84 4.30
576 577 3.882131 ACGGGAGTGATTGGGATTG 57.118 52.632 0.00 0.00 44.82 2.67
577 578 0.255890 ACGGGAGTGATTGGGATTGG 59.744 55.000 0.00 0.00 44.82 3.16
578 579 0.466189 CGGGAGTGATTGGGATTGGG 60.466 60.000 0.00 0.00 0.00 4.12
579 580 0.926293 GGGAGTGATTGGGATTGGGA 59.074 55.000 0.00 0.00 0.00 4.37
588 589 0.421495 TGGGATTGGGAGAGGAAGGA 59.579 55.000 0.00 0.00 0.00 3.36
592 593 2.046292 GATTGGGAGAGGAAGGAGAGG 58.954 57.143 0.00 0.00 0.00 3.69
644 645 4.070009 GACCGATGGTTTGACTAAGGTTT 58.930 43.478 0.00 0.00 35.25 3.27
704 705 2.677971 GCACGGGCCATATATAGCG 58.322 57.895 4.39 0.00 0.00 4.26
705 706 0.810031 GCACGGGCCATATATAGCGG 60.810 60.000 4.39 0.00 0.00 5.52
708 709 0.104304 CGGGCCATATATAGCGGGTC 59.896 60.000 4.39 0.00 0.00 4.46
709 710 0.104304 GGGCCATATATAGCGGGTCG 59.896 60.000 4.39 0.00 0.00 4.79
712 713 1.202382 GCCATATATAGCGGGTCGGTC 60.202 57.143 0.00 0.00 38.83 4.79
714 715 2.376109 CATATATAGCGGGTCGGTCCT 58.624 52.381 0.00 0.00 38.83 3.85
716 717 2.822707 ATATAGCGGGTCGGTCCTAT 57.177 50.000 0.00 0.00 38.83 2.57
728 729 2.442458 TCCTATGTGGCGGCGGTA 60.442 61.111 9.78 0.00 35.26 4.02
751 753 5.339008 TCCGTTGTAGATGCTCTTACATT 57.661 39.130 0.00 0.00 0.00 2.71
752 754 6.459670 TCCGTTGTAGATGCTCTTACATTA 57.540 37.500 0.00 0.00 0.00 1.90
862 866 4.995124 AGACACTAGCACAAATAGTACCG 58.005 43.478 0.00 0.00 32.24 4.02
901 905 5.464069 CCCATTAAGGCCTTAAACCCTAAT 58.536 41.667 35.41 19.44 38.38 1.73
1371 1407 4.686091 TGCTGTGAACGATTAGAAGACTTG 59.314 41.667 0.00 0.00 0.00 3.16
1372 1408 4.434857 GCTGTGAACGATTAGAAGACTTGC 60.435 45.833 0.00 0.00 0.00 4.01
1381 1417 8.136057 ACGATTAGAAGACTTGCTCATTATTG 57.864 34.615 0.00 0.00 0.00 1.90
1384 1420 9.102757 GATTAGAAGACTTGCTCATTATTGTCA 57.897 33.333 0.00 0.00 0.00 3.58
1407 1443 1.160137 GCTAGCATTAATCCAGGGCG 58.840 55.000 10.63 0.00 0.00 6.13
1478 1535 9.671279 ATTTTCTTGATTGTTTTTATCCCATCC 57.329 29.630 0.00 0.00 0.00 3.51
1483 1540 6.934056 TGATTGTTTTTATCCCATCCTGTTG 58.066 36.000 0.00 0.00 0.00 3.33
1513 1575 3.435105 TTTTGCAAGCAAAGTCACGAT 57.565 38.095 18.28 0.00 45.15 3.73
1516 1578 3.811722 TGCAAGCAAAGTCACGATTAG 57.188 42.857 0.00 0.00 0.00 1.73
1517 1579 3.398406 TGCAAGCAAAGTCACGATTAGA 58.602 40.909 0.00 0.00 0.00 2.10
1572 1634 3.385115 ACAAGATAAGGAGGTACAGGGG 58.615 50.000 0.00 0.00 0.00 4.79
1579 1641 0.551396 GGAGGTACAGGGGAAATGGG 59.449 60.000 0.00 0.00 0.00 4.00
1582 1644 1.852965 AGGTACAGGGGAAATGGGATG 59.147 52.381 0.00 0.00 0.00 3.51
1636 1698 1.875514 GCATCTTTATCATGAGCGGCA 59.124 47.619 1.45 0.00 0.00 5.69
1675 1737 6.972328 GTCTGTCTCTAACTATCAAAGCTCAG 59.028 42.308 0.00 0.00 0.00 3.35
1709 1771 2.093973 AGCATGATACTGGCCGTATAGC 60.094 50.000 16.74 18.34 38.90 2.97
1802 1865 8.530269 ACACGAGTCTTTTAACCACTAATTAG 57.470 34.615 11.05 11.05 0.00 1.73
1825 1888 7.052142 AGTGGTAAGATTAATAACCCTCTCG 57.948 40.000 10.19 0.00 0.00 4.04
1867 1930 4.795970 TTTTTCTTCAGCTCGACTTGAC 57.204 40.909 0.00 0.00 0.00 3.18
1881 1944 3.498397 CGACTTGACCTGTACAAAGCAAT 59.502 43.478 0.00 0.00 0.00 3.56
1890 1953 8.134895 TGACCTGTACAAAGCAATTTTCTTTAG 58.865 33.333 0.00 0.00 32.94 1.85
1917 1980 7.173907 ACAGATCTGACCAAATTCACAACTTAG 59.826 37.037 29.27 0.00 0.00 2.18
1979 2157 7.264947 AGGAAATTTCTTTACACAAACACTGG 58.735 34.615 17.42 0.00 0.00 4.00
2497 2739 3.961849 TGCCTGCTACATGACCAATAAA 58.038 40.909 0.00 0.00 0.00 1.40
2526 2775 6.017934 CAGTCACTAACATTAACACAGCAACT 60.018 38.462 0.00 0.00 0.00 3.16
2543 2792 0.818040 ACTTGGCTTCCCGTGAACAC 60.818 55.000 0.00 0.00 0.00 3.32
2544 2793 0.817634 CTTGGCTTCCCGTGAACACA 60.818 55.000 5.80 0.00 0.00 3.72
2599 2848 3.530265 TCCGTTCCGCACAATTAGTAT 57.470 42.857 0.00 0.00 0.00 2.12
2708 2958 8.918202 AGAAAGGGAAATGATAATAATACGCA 57.082 30.769 0.00 0.00 0.00 5.24
2726 2977 2.414481 CGCACACAAGAAGAGAATCAGG 59.586 50.000 0.00 0.00 37.82 3.86
2728 2979 4.067896 GCACACAAGAAGAGAATCAGGAA 58.932 43.478 0.00 0.00 37.82 3.36
2730 2981 5.059161 CACACAAGAAGAGAATCAGGAACA 58.941 41.667 0.00 0.00 37.82 3.18
2731 2982 5.178996 CACACAAGAAGAGAATCAGGAACAG 59.821 44.000 0.00 0.00 37.82 3.16
2752 3003 7.448748 ACAGCGAGGAGTTGTAAATATTTTT 57.551 32.000 5.91 0.00 42.62 1.94
2878 3147 9.189723 GTTTTACACTGACGAAAGACTAGTATT 57.810 33.333 0.00 0.00 0.00 1.89
2990 3282 6.218019 CACAGCAATCTCTCCAATTCAAAAA 58.782 36.000 0.00 0.00 0.00 1.94
3002 3294 9.036671 TCTCCAATTCAAAAATCCGTTAAAAAC 57.963 29.630 0.00 0.00 0.00 2.43
3003 3295 8.718102 TCCAATTCAAAAATCCGTTAAAAACA 57.282 26.923 0.00 0.00 0.00 2.83
3040 3334 2.781174 ACAAGGGTTCCTCAAACTGGTA 59.219 45.455 0.00 0.00 38.02 3.25
3112 3406 4.407296 GGATCAGACCTGTACCTTGAAGAT 59.593 45.833 0.00 0.00 0.00 2.40
3235 3645 9.855361 CGACTTCTGTGAAATGATATTTCATAC 57.145 33.333 17.04 8.43 41.83 2.39
3302 3712 3.567585 TCATTTCACCACTGAATTCGCAA 59.432 39.130 0.04 0.00 36.26 4.85
3304 3714 3.557577 TTCACCACTGAATTCGCAATG 57.442 42.857 0.04 0.00 31.00 2.82
3382 3874 3.411446 TCATTTCACCACTGAATTCGCT 58.589 40.909 0.04 0.00 36.26 4.93
3496 3989 7.548196 TCGTTGGTCAAAGATTATATTGGAC 57.452 36.000 0.00 0.00 0.00 4.02
3538 4031 4.202825 ACCCTTTGATCCTCCCTGAAAAAT 60.203 41.667 0.00 0.00 0.00 1.82
3540 4033 5.337813 CCCTTTGATCCTCCCTGAAAAATTG 60.338 44.000 0.00 0.00 0.00 2.32
3541 4034 4.806640 TTGATCCTCCCTGAAAAATTGC 57.193 40.909 0.00 0.00 0.00 3.56
3543 4036 4.158786 TGATCCTCCCTGAAAAATTGCAA 58.841 39.130 0.00 0.00 0.00 4.08
3545 4038 4.540359 TCCTCCCTGAAAAATTGCAATG 57.460 40.909 13.82 0.00 0.00 2.82
3546 4039 3.903090 TCCTCCCTGAAAAATTGCAATGT 59.097 39.130 13.82 3.97 0.00 2.71
3548 4041 5.541868 TCCTCCCTGAAAAATTGCAATGTTA 59.458 36.000 15.23 0.07 0.00 2.41
3550 4043 6.880529 CCTCCCTGAAAAATTGCAATGTTATT 59.119 34.615 15.23 7.06 0.00 1.40
3551 4044 7.391275 CCTCCCTGAAAAATTGCAATGTTATTT 59.609 33.333 15.23 12.52 0.00 1.40
3552 4045 8.688747 TCCCTGAAAAATTGCAATGTTATTTT 57.311 26.923 15.23 15.60 34.03 1.82
3553 4046 8.782144 TCCCTGAAAAATTGCAATGTTATTTTC 58.218 29.630 26.06 26.06 37.31 2.29
3554 4047 8.566260 CCCTGAAAAATTGCAATGTTATTTTCA 58.434 29.630 29.78 29.78 41.68 2.69
3614 4125 2.225255 GAGTGAAAGAAGCTGCAACTCC 59.775 50.000 1.02 0.00 0.00 3.85
3631 4142 2.641815 ACTCCTTGGCTCTCACTGAAAT 59.358 45.455 0.00 0.00 0.00 2.17
3677 4190 8.607713 TGAAATCCTCAAATAACTACCCAGTAA 58.392 33.333 0.00 0.00 33.48 2.24
3712 4225 4.823989 GCATCCAGCCTATAGTTTGAACAT 59.176 41.667 0.00 0.00 37.23 2.71
3741 4254 2.513753 CAGTATTCAAACCAGGGTGCA 58.486 47.619 0.00 0.00 0.00 4.57
3807 4321 1.942657 TGAACTGCACAGAAAGCACTC 59.057 47.619 4.31 0.00 37.02 3.51
4147 4720 8.545472 ACAGGGTTAGTAATTCTAGCAAATACA 58.455 33.333 0.00 0.00 32.60 2.29
4148 4721 9.046296 CAGGGTTAGTAATTCTAGCAAATACAG 57.954 37.037 0.00 0.00 32.60 2.74
4149 4722 8.769359 AGGGTTAGTAATTCTAGCAAATACAGT 58.231 33.333 0.00 0.00 32.60 3.55
4482 5088 5.447683 GCATATTCGTGTTGAATCTTCTGCA 60.448 40.000 0.00 0.00 44.01 4.41
4608 5335 7.657354 GCCATGACATGTCAGTCTGTATAATAA 59.343 37.037 30.63 5.03 43.61 1.40
4656 5383 2.285220 CCATGTGCACTATGTTACTCGC 59.715 50.000 19.41 0.00 0.00 5.03
4683 5410 4.355437 TGTTTAAGTTTGCGTGGTCAATG 58.645 39.130 0.00 0.00 0.00 2.82
4686 5413 5.950758 TTAAGTTTGCGTGGTCAATGTAT 57.049 34.783 0.00 0.00 0.00 2.29
4687 5414 3.829886 AGTTTGCGTGGTCAATGTATG 57.170 42.857 0.00 0.00 0.00 2.39
4825 5557 1.556911 TCCTGCTTGATTCTCCAGGAC 59.443 52.381 13.10 0.00 46.50 3.85
4969 5701 4.579869 TGATAAGGGCACAGAAGAAAGAC 58.420 43.478 0.00 0.00 0.00 3.01
5053 5787 2.286294 CGCATAAGTCACCTTCAGATGC 59.714 50.000 0.00 0.00 37.05 3.91
5062 5796 1.021390 CCTTCAGATGCGTGTGGACC 61.021 60.000 2.85 0.00 0.00 4.46
5212 5980 4.577875 AGAATCTTCTGAGAAGCCTGTTG 58.422 43.478 17.14 0.00 35.89 3.33
5231 6001 4.893524 TGTTGAGTTGAGTTGAGTAGAGGA 59.106 41.667 0.00 0.00 0.00 3.71
5263 6035 2.100605 AACGCTCAACTCCTCATTCC 57.899 50.000 0.00 0.00 0.00 3.01
5271 6043 3.932710 TCAACTCCTCATTCCGAATTTCG 59.067 43.478 11.81 11.81 40.07 3.46
5306 6078 8.294577 CCTAAACCTGTAACTGGAATTTTGTAC 58.705 37.037 0.00 0.00 0.00 2.90
5521 8589 6.863126 GTGAGGTTATGAAAAACACCATCTTG 59.137 38.462 0.00 0.00 0.00 3.02
5539 8607 3.599412 GTGGGACGCACAGTTTCTA 57.401 52.632 17.08 0.00 39.55 2.10
5552 8622 1.162698 GTTTCTAAGCCCGGGTGAAC 58.837 55.000 24.63 13.64 0.00 3.18
5562 8632 2.785562 CCCGGGTGAACAGTAAAATCA 58.214 47.619 14.18 0.00 0.00 2.57
5564 8634 3.570550 CCCGGGTGAACAGTAAAATCAAA 59.429 43.478 14.18 0.00 0.00 2.69
5565 8635 4.038162 CCCGGGTGAACAGTAAAATCAAAA 59.962 41.667 14.18 0.00 0.00 2.44
5566 8636 5.452077 CCCGGGTGAACAGTAAAATCAAAAA 60.452 40.000 14.18 0.00 0.00 1.94
5608 8678 7.344910 TGTGACAAACATTGACAAAAGTTTC 57.655 32.000 15.26 9.10 35.58 2.78
5627 8697 4.775440 TTCAAGTGCTTGCAAAAATTCG 57.225 36.364 0.00 0.00 40.24 3.34
5633 8703 3.735240 GTGCTTGCAAAAATTCGTCATGA 59.265 39.130 0.00 0.00 0.00 3.07
5634 8704 3.982701 TGCTTGCAAAAATTCGTCATGAG 59.017 39.130 0.00 0.00 0.00 2.90
5635 8705 3.365820 GCTTGCAAAAATTCGTCATGAGG 59.634 43.478 9.16 9.16 0.00 3.86
5644 8714 2.672961 TCGTCATGAGGTCACATTCC 57.327 50.000 14.67 0.00 0.00 3.01
5646 8716 3.361786 TCGTCATGAGGTCACATTCCTA 58.638 45.455 14.67 0.00 35.20 2.94
5647 8717 3.381590 TCGTCATGAGGTCACATTCCTAG 59.618 47.826 14.67 0.00 35.20 3.02
5652 8722 3.791320 TGAGGTCACATTCCTAGAAGGT 58.209 45.455 0.00 0.00 36.53 3.50
5659 8729 2.026822 ACATTCCTAGAAGGTGTGGCAG 60.027 50.000 0.00 0.00 36.53 4.85
5661 8731 2.024176 TCCTAGAAGGTGTGGCAGAA 57.976 50.000 0.00 0.00 36.53 3.02
5721 8791 2.825861 AAAGCATTTTGGAGCACTGG 57.174 45.000 0.00 0.00 31.62 4.00
5722 8792 1.999648 AAGCATTTTGGAGCACTGGA 58.000 45.000 0.00 0.00 0.00 3.86
5723 8793 2.226962 AGCATTTTGGAGCACTGGAT 57.773 45.000 0.00 0.00 0.00 3.41
5724 8794 2.532843 AGCATTTTGGAGCACTGGATT 58.467 42.857 0.00 0.00 0.00 3.01
5725 8795 2.901839 AGCATTTTGGAGCACTGGATTT 59.098 40.909 0.00 0.00 0.00 2.17
5726 8796 2.997986 GCATTTTGGAGCACTGGATTTG 59.002 45.455 0.00 0.00 0.00 2.32
5731 8801 5.860941 TTTGGAGCACTGGATTTGTTTTA 57.139 34.783 0.00 0.00 0.00 1.52
5742 8812 3.584834 GATTTGTTTTATGCCACGCCTT 58.415 40.909 0.00 0.00 0.00 4.35
5757 8827 3.063997 CACGCCTTACAGGAATGTGATTC 59.936 47.826 0.00 0.00 37.67 2.52
5776 8846 9.473007 TGTGATTCCATGACTAATTTATCCAAA 57.527 29.630 0.00 0.00 0.00 3.28
5795 8865 7.876896 TCCAAACACTTAAAAGTTTTGTCAC 57.123 32.000 11.18 0.00 37.08 3.67
5798 8868 8.552034 CCAAACACTTAAAAGTTTTGTCACAAA 58.448 29.630 11.18 0.00 37.08 2.83
5799 8869 9.922305 CAAACACTTAAAAGTTTTGTCACAAAA 57.078 25.926 11.83 11.83 37.08 2.44
5865 8935 2.680312 CTCATTTGAGCTCGGGAGAA 57.320 50.000 9.64 0.00 35.13 2.87
5866 8936 2.548875 CTCATTTGAGCTCGGGAGAAG 58.451 52.381 9.64 0.00 35.13 2.85
5867 8937 1.208052 TCATTTGAGCTCGGGAGAAGG 59.792 52.381 9.64 1.06 39.18 3.46
5868 8938 1.208052 CATTTGAGCTCGGGAGAAGGA 59.792 52.381 9.64 0.00 39.18 3.36
5869 8939 0.608640 TTTGAGCTCGGGAGAAGGAC 59.391 55.000 9.64 0.00 39.18 3.85
5870 8940 0.541998 TTGAGCTCGGGAGAAGGACA 60.542 55.000 9.64 0.00 39.18 4.02
5871 8941 1.251527 TGAGCTCGGGAGAAGGACAC 61.252 60.000 9.64 0.00 39.18 3.67
5872 8942 0.968393 GAGCTCGGGAGAAGGACACT 60.968 60.000 0.00 0.00 39.18 3.55
5873 8943 0.543174 AGCTCGGGAGAAGGACACTT 60.543 55.000 0.00 0.00 40.34 3.16
5874 8944 0.321996 GCTCGGGAGAAGGACACTTT 59.678 55.000 0.00 0.00 36.97 2.66
5875 8945 1.270893 GCTCGGGAGAAGGACACTTTT 60.271 52.381 0.00 0.00 36.97 2.27
5876 8946 2.417719 CTCGGGAGAAGGACACTTTTG 58.582 52.381 0.00 0.00 36.97 2.44
5877 8947 1.766496 TCGGGAGAAGGACACTTTTGT 59.234 47.619 0.00 0.00 36.97 2.83
5878 8948 2.967201 TCGGGAGAAGGACACTTTTGTA 59.033 45.455 0.00 0.00 36.97 2.41
5879 8949 3.581332 TCGGGAGAAGGACACTTTTGTAT 59.419 43.478 0.00 0.00 36.97 2.29
5880 8950 4.773674 TCGGGAGAAGGACACTTTTGTATA 59.226 41.667 0.00 0.00 36.97 1.47
5881 8951 4.868734 CGGGAGAAGGACACTTTTGTATAC 59.131 45.833 0.00 0.00 36.97 1.47
5882 8952 5.337330 CGGGAGAAGGACACTTTTGTATACT 60.337 44.000 4.17 0.00 36.97 2.12
5883 8953 6.473758 GGGAGAAGGACACTTTTGTATACTT 58.526 40.000 4.17 0.00 36.97 2.24
5884 8954 6.371825 GGGAGAAGGACACTTTTGTATACTTG 59.628 42.308 4.17 0.00 36.97 3.16
5885 8955 6.935208 GGAGAAGGACACTTTTGTATACTTGT 59.065 38.462 4.17 0.06 36.97 3.16
5886 8956 7.117956 GGAGAAGGACACTTTTGTATACTTGTC 59.882 40.741 4.17 8.51 36.97 3.18
5887 8957 7.736893 AGAAGGACACTTTTGTATACTTGTCT 58.263 34.615 4.17 0.00 36.97 3.41
5888 8958 7.657761 AGAAGGACACTTTTGTATACTTGTCTG 59.342 37.037 4.17 0.00 36.97 3.51
5889 8959 6.827727 AGGACACTTTTGTATACTTGTCTGT 58.172 36.000 4.17 0.63 35.47 3.41
5890 8960 6.706270 AGGACACTTTTGTATACTTGTCTGTG 59.294 38.462 4.17 8.18 35.47 3.66
5891 8961 6.482308 GGACACTTTTGTATACTTGTCTGTGT 59.518 38.462 4.17 10.91 35.47 3.72
5892 8962 7.246674 ACACTTTTGTATACTTGTCTGTGTG 57.753 36.000 4.17 5.46 34.31 3.82
5893 8963 6.136071 CACTTTTGTATACTTGTCTGTGTGC 58.864 40.000 4.17 0.00 0.00 4.57
5894 8964 6.017934 CACTTTTGTATACTTGTCTGTGTGCT 60.018 38.462 4.17 0.00 0.00 4.40
5895 8965 5.922739 TTTGTATACTTGTCTGTGTGCTG 57.077 39.130 4.17 0.00 0.00 4.41
5896 8966 4.600692 TGTATACTTGTCTGTGTGCTGT 57.399 40.909 4.17 0.00 0.00 4.40
5897 8967 4.956085 TGTATACTTGTCTGTGTGCTGTT 58.044 39.130 4.17 0.00 0.00 3.16
5898 8968 6.091718 TGTATACTTGTCTGTGTGCTGTTA 57.908 37.500 4.17 0.00 0.00 2.41
5899 8969 6.156519 TGTATACTTGTCTGTGTGCTGTTAG 58.843 40.000 4.17 0.00 0.00 2.34
5900 8970 3.819564 ACTTGTCTGTGTGCTGTTAGA 57.180 42.857 0.00 0.00 0.00 2.10
5901 8971 4.342862 ACTTGTCTGTGTGCTGTTAGAT 57.657 40.909 0.00 0.00 0.00 1.98
5902 8972 4.060900 ACTTGTCTGTGTGCTGTTAGATG 58.939 43.478 0.00 0.00 0.00 2.90
5903 8973 3.044235 TGTCTGTGTGCTGTTAGATGG 57.956 47.619 0.00 0.00 0.00 3.51
5904 8974 2.368548 TGTCTGTGTGCTGTTAGATGGT 59.631 45.455 0.00 0.00 0.00 3.55
5905 8975 3.576550 TGTCTGTGTGCTGTTAGATGGTA 59.423 43.478 0.00 0.00 0.00 3.25
5906 8976 4.039852 TGTCTGTGTGCTGTTAGATGGTAA 59.960 41.667 0.00 0.00 0.00 2.85
5907 8977 4.994852 GTCTGTGTGCTGTTAGATGGTAAA 59.005 41.667 0.00 0.00 0.00 2.01
5908 8978 5.468746 GTCTGTGTGCTGTTAGATGGTAAAA 59.531 40.000 0.00 0.00 0.00 1.52
5909 8979 6.149474 GTCTGTGTGCTGTTAGATGGTAAAAT 59.851 38.462 0.00 0.00 0.00 1.82
5910 8980 7.333423 GTCTGTGTGCTGTTAGATGGTAAAATA 59.667 37.037 0.00 0.00 0.00 1.40
5911 8981 7.880713 TCTGTGTGCTGTTAGATGGTAAAATAA 59.119 33.333 0.00 0.00 0.00 1.40
5912 8982 8.574251 TGTGTGCTGTTAGATGGTAAAATAAT 57.426 30.769 0.00 0.00 0.00 1.28
5913 8983 9.674068 TGTGTGCTGTTAGATGGTAAAATAATA 57.326 29.630 0.00 0.00 0.00 0.98
5917 8987 8.717821 TGCTGTTAGATGGTAAAATAATATCGC 58.282 33.333 0.00 0.00 0.00 4.58
5918 8988 8.717821 GCTGTTAGATGGTAAAATAATATCGCA 58.282 33.333 0.00 0.00 0.00 5.10
5946 9016 7.591006 ATTATATTATACAAACGCTGGACCG 57.409 36.000 0.00 0.00 0.00 4.79
5947 9017 2.012937 TTATACAAACGCTGGACCGG 57.987 50.000 0.00 0.00 0.00 5.28
5948 9018 0.460635 TATACAAACGCTGGACCGGC 60.461 55.000 15.94 15.94 0.00 6.13
5958 9028 4.856801 GGACCGGCGGTGATGCAT 62.857 66.667 39.41 10.13 35.25 3.96
5959 9029 2.108157 GACCGGCGGTGATGCATA 59.892 61.111 39.41 0.00 35.25 3.14
5960 9030 1.301716 GACCGGCGGTGATGCATAT 60.302 57.895 39.41 8.25 35.25 1.78
5961 9031 0.884704 GACCGGCGGTGATGCATATT 60.885 55.000 39.41 7.31 35.25 1.28
5962 9032 0.465460 ACCGGCGGTGATGCATATTT 60.465 50.000 33.71 0.00 32.98 1.40
5963 9033 0.040157 CCGGCGGTGATGCATATTTG 60.040 55.000 19.97 0.00 36.28 2.32
5964 9034 0.943673 CGGCGGTGATGCATATTTGA 59.056 50.000 0.00 0.00 36.28 2.69
5965 9035 1.536766 CGGCGGTGATGCATATTTGAT 59.463 47.619 0.00 0.00 36.28 2.57
5966 9036 2.413239 CGGCGGTGATGCATATTTGATC 60.413 50.000 0.00 0.00 36.28 2.92
5967 9037 2.816087 GGCGGTGATGCATATTTGATCT 59.184 45.455 0.00 0.00 36.28 2.75
5968 9038 3.254166 GGCGGTGATGCATATTTGATCTT 59.746 43.478 0.00 0.00 36.28 2.40
5969 9039 4.224433 GCGGTGATGCATATTTGATCTTG 58.776 43.478 0.00 0.00 34.15 3.02
5970 9040 4.790878 CGGTGATGCATATTTGATCTTGG 58.209 43.478 0.00 0.00 0.00 3.61
5971 9041 4.276678 CGGTGATGCATATTTGATCTTGGT 59.723 41.667 0.00 0.00 0.00 3.67
5972 9042 5.469760 CGGTGATGCATATTTGATCTTGGTA 59.530 40.000 0.00 0.00 0.00 3.25
5973 9043 6.347969 CGGTGATGCATATTTGATCTTGGTAG 60.348 42.308 0.00 0.00 0.00 3.18
5974 9044 6.488006 GGTGATGCATATTTGATCTTGGTAGT 59.512 38.462 0.00 0.00 0.00 2.73
5975 9045 7.661437 GGTGATGCATATTTGATCTTGGTAGTA 59.339 37.037 0.00 0.00 0.00 1.82
5976 9046 8.715998 GTGATGCATATTTGATCTTGGTAGTAG 58.284 37.037 0.00 0.00 0.00 2.57
5977 9047 8.650490 TGATGCATATTTGATCTTGGTAGTAGA 58.350 33.333 0.00 0.00 0.00 2.59
5978 9048 9.494271 GATGCATATTTGATCTTGGTAGTAGAA 57.506 33.333 0.00 0.00 0.00 2.10
5979 9049 8.662781 TGCATATTTGATCTTGGTAGTAGAAC 57.337 34.615 0.00 0.00 0.00 3.01
5980 9050 7.715249 TGCATATTTGATCTTGGTAGTAGAACC 59.285 37.037 0.00 0.00 40.19 3.62
5989 9059 4.803098 TGGTAGTAGAACCAAGAGCTTC 57.197 45.455 0.00 0.00 46.55 3.86
5990 9060 3.514309 TGGTAGTAGAACCAAGAGCTTCC 59.486 47.826 0.00 0.00 46.55 3.46
5991 9061 3.514309 GGTAGTAGAACCAAGAGCTTCCA 59.486 47.826 0.00 0.00 39.50 3.53
5992 9062 4.020485 GGTAGTAGAACCAAGAGCTTCCAA 60.020 45.833 0.00 0.00 39.50 3.53
5993 9063 4.706842 AGTAGAACCAAGAGCTTCCAAA 57.293 40.909 0.00 0.00 0.00 3.28
5994 9064 5.048846 AGTAGAACCAAGAGCTTCCAAAA 57.951 39.130 0.00 0.00 0.00 2.44
5995 9065 5.445964 AGTAGAACCAAGAGCTTCCAAAAA 58.554 37.500 0.00 0.00 0.00 1.94
6020 9090 8.533569 AAAAAGTAGAACCAAGAGAATTTCCA 57.466 30.769 0.00 0.00 0.00 3.53
6021 9091 8.712228 AAAAGTAGAACCAAGAGAATTTCCAT 57.288 30.769 0.00 0.00 0.00 3.41
6022 9092 7.693969 AAGTAGAACCAAGAGAATTTCCATG 57.306 36.000 0.00 0.00 0.00 3.66
6023 9093 6.784031 AGTAGAACCAAGAGAATTTCCATGT 58.216 36.000 0.00 0.00 0.00 3.21
6024 9094 7.918076 AGTAGAACCAAGAGAATTTCCATGTA 58.082 34.615 0.00 0.00 0.00 2.29
6025 9095 8.552296 AGTAGAACCAAGAGAATTTCCATGTAT 58.448 33.333 0.00 0.00 0.00 2.29
6026 9096 9.178758 GTAGAACCAAGAGAATTTCCATGTATT 57.821 33.333 0.00 0.00 0.00 1.89
6027 9097 8.655935 AGAACCAAGAGAATTTCCATGTATTT 57.344 30.769 0.00 0.00 0.00 1.40
6028 9098 9.093458 AGAACCAAGAGAATTTCCATGTATTTT 57.907 29.630 0.00 0.00 0.00 1.82
6029 9099 9.710900 GAACCAAGAGAATTTCCATGTATTTTT 57.289 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
535 536 4.181010 CCTCCATGGCCAGGTCCG 62.181 72.222 17.55 0.63 0.00 4.79
550 551 2.182858 AATCACTCCCGTCCCCTCCT 62.183 60.000 0.00 0.00 0.00 3.69
552 553 1.522569 CAATCACTCCCGTCCCCTC 59.477 63.158 0.00 0.00 0.00 4.30
565 566 2.285275 TCCTCTCCCAATCCCAATCA 57.715 50.000 0.00 0.00 0.00 2.57
574 575 1.007721 CTCCTCTCCTTCCTCTCCCAA 59.992 57.143 0.00 0.00 0.00 4.12
575 576 0.633921 CTCCTCTCCTTCCTCTCCCA 59.366 60.000 0.00 0.00 0.00 4.37
576 577 0.930726 TCTCCTCTCCTTCCTCTCCC 59.069 60.000 0.00 0.00 0.00 4.30
577 578 1.749286 CGTCTCCTCTCCTTCCTCTCC 60.749 61.905 0.00 0.00 0.00 3.71
578 579 1.675552 CGTCTCCTCTCCTTCCTCTC 58.324 60.000 0.00 0.00 0.00 3.20
579 580 0.257616 CCGTCTCCTCTCCTTCCTCT 59.742 60.000 0.00 0.00 0.00 3.69
588 589 2.617538 TCCCCTCCCGTCTCCTCT 60.618 66.667 0.00 0.00 0.00 3.69
592 593 4.862823 CCCCTCCCCTCCCGTCTC 62.863 77.778 0.00 0.00 0.00 3.36
626 627 4.083484 CCGACAAACCTTAGTCAAACCATC 60.083 45.833 0.00 0.00 34.48 3.51
690 691 0.104304 CGACCCGCTATATATGGCCC 59.896 60.000 14.72 2.33 0.00 5.80
691 692 0.104304 CCGACCCGCTATATATGGCC 59.896 60.000 14.72 0.00 0.00 5.36
695 696 2.822707 AGGACCGACCCGCTATATAT 57.177 50.000 0.00 0.00 40.05 0.86
704 705 2.504519 GCCACATAGGACCGACCC 59.495 66.667 0.00 0.00 41.22 4.46
705 706 2.106332 CGCCACATAGGACCGACC 59.894 66.667 0.00 0.00 41.22 4.79
709 710 4.910585 CCGCCGCCACATAGGACC 62.911 72.222 0.00 0.00 41.22 4.46
712 713 1.374252 GATACCGCCGCCACATAGG 60.374 63.158 0.00 0.00 41.84 2.57
714 715 2.738480 GGATACCGCCGCCACATA 59.262 61.111 0.00 0.00 0.00 2.29
751 753 2.000701 CACCCAGGCCTGTCCCATA 61.001 63.158 30.63 0.00 34.51 2.74
752 754 3.341629 CACCCAGGCCTGTCCCAT 61.342 66.667 30.63 8.72 34.51 4.00
862 866 2.058001 GGGCTATTGTTGGGCCACC 61.058 63.158 5.23 0.00 46.93 4.61
1110 1123 2.685380 CGGGAGAGAAGGCCTGGT 60.685 66.667 5.69 0.00 0.00 4.00
1114 1127 2.188207 GAAGCGGGAGAGAAGGCC 59.812 66.667 0.00 0.00 0.00 5.19
1164 1183 4.779733 GACGAGGGAGGGGAGGCA 62.780 72.222 0.00 0.00 0.00 4.75
1349 1382 4.434857 GCAAGTCTTCTAATCGTTCACAGC 60.435 45.833 0.00 0.00 0.00 4.40
1371 1407 4.333649 TGCTAGCAACTGACAATAATGAGC 59.666 41.667 16.84 0.00 0.00 4.26
1372 1408 6.615264 ATGCTAGCAACTGACAATAATGAG 57.385 37.500 23.54 0.00 0.00 2.90
1381 1417 4.274459 CCTGGATTAATGCTAGCAACTGAC 59.726 45.833 23.54 13.02 0.00 3.51
1384 1420 3.825328 CCCTGGATTAATGCTAGCAACT 58.175 45.455 23.54 14.49 0.00 3.16
1462 1516 6.098982 ACAACAACAGGATGGGATAAAAACAA 59.901 34.615 0.00 0.00 43.62 2.83
1478 1535 5.958949 GCTTGCAAAATGTAAACAACAACAG 59.041 36.000 0.00 0.00 42.70 3.16
1483 1540 6.541969 ACTTTGCTTGCAAAATGTAAACAAC 58.458 32.000 19.29 0.00 30.13 3.32
1572 1634 2.340337 GCTGTTGTTGCATCCCATTTC 58.660 47.619 0.00 0.00 0.00 2.17
1579 1641 0.665369 GCACTGGCTGTTGTTGCATC 60.665 55.000 0.00 0.00 36.96 3.91
1582 1644 0.249573 AATGCACTGGCTGTTGTTGC 60.250 50.000 0.00 0.00 41.91 4.17
1636 1698 2.636893 AGACAGACAGCCTGATTGTTCT 59.363 45.455 0.00 0.19 45.78 3.01
1675 1737 3.764885 ATCATGCTTAACCTTGTTCGC 57.235 42.857 0.00 0.00 0.00 4.70
1735 1797 8.231692 TGAGAGATGAGAATTGACCTAGTAAG 57.768 38.462 0.00 0.00 0.00 2.34
1802 1865 7.047460 TCGAGAGGGTTATTAATCTTACCAC 57.953 40.000 13.33 8.50 32.20 4.16
1804 1867 7.668492 ACATCGAGAGGGTTATTAATCTTACC 58.332 38.462 0.00 0.00 0.00 2.85
1867 1930 8.134895 TGTCTAAAGAAAATTGCTTTGTACAGG 58.865 33.333 9.15 0.00 36.35 4.00
1881 1944 8.924511 ATTTGGTCAGATCTGTCTAAAGAAAA 57.075 30.769 26.22 15.88 34.21 2.29
1890 1953 5.471456 AGTTGTGAATTTGGTCAGATCTGTC 59.529 40.000 21.92 16.39 0.00 3.51
1917 1980 7.551035 AGTTGAGCTGAAGAACAATATGATC 57.449 36.000 0.00 0.00 0.00 2.92
1979 2157 9.294030 CTCATAGATTTAAGTTGTGAATTTGGC 57.706 33.333 0.00 0.00 0.00 4.52
2020 2198 0.110238 TTGTCTCGCGATTTTGCAGC 60.110 50.000 10.36 0.00 34.15 5.25
2464 2705 1.570803 AGCAGGCATGAGAGAGAACT 58.429 50.000 0.62 0.00 0.00 3.01
2497 2739 7.148154 TGCTGTGTTAATGTTAGTGACTGTTTT 60.148 33.333 0.00 0.00 0.00 2.43
2500 2742 5.364778 TGCTGTGTTAATGTTAGTGACTGT 58.635 37.500 0.00 0.00 0.00 3.55
2526 2775 0.394488 TTGTGTTCACGGGAAGCCAA 60.394 50.000 0.00 3.74 32.62 4.52
2599 2848 8.892723 CAATGAAGCTGGTAGTATTTGTTGATA 58.107 33.333 0.00 0.00 0.00 2.15
2702 2952 4.820897 TGATTCTCTTCTTGTGTGCGTAT 58.179 39.130 0.00 0.00 0.00 3.06
2708 2958 5.296151 TGTTCCTGATTCTCTTCTTGTGT 57.704 39.130 0.00 0.00 0.00 3.72
2726 2977 6.663944 AATATTTACAACTCCTCGCTGTTC 57.336 37.500 0.00 0.00 0.00 3.18
2728 2979 7.361799 GGAAAAATATTTACAACTCCTCGCTGT 60.362 37.037 0.01 0.00 29.12 4.40
2730 2981 6.095021 GGGAAAAATATTTACAACTCCTCGCT 59.905 38.462 0.01 0.00 30.32 4.93
2731 2982 6.127842 TGGGAAAAATATTTACAACTCCTCGC 60.128 38.462 0.01 0.00 30.32 5.03
2752 3003 2.054021 TCACCAACAGATCACTTGGGA 58.946 47.619 20.10 13.57 38.82 4.37
2990 3282 8.851541 TCCTGTAATAAGTGTTTTTAACGGAT 57.148 30.769 0.00 0.00 0.00 4.18
3002 3294 5.768164 ACCCTTGTGTTTCCTGTAATAAGTG 59.232 40.000 0.00 0.00 0.00 3.16
3003 3295 5.948842 ACCCTTGTGTTTCCTGTAATAAGT 58.051 37.500 0.00 0.00 0.00 2.24
3040 3334 7.124901 TCTCAGCTAGAACCTATGAATGTTCTT 59.875 37.037 9.84 0.00 46.77 2.52
3112 3406 1.258445 GGAGGAGGACAAGAAGCCGA 61.258 60.000 0.00 0.00 0.00 5.54
3123 3417 2.840203 AATCCGGCAAGGGAGGAGGA 62.840 60.000 0.00 0.00 40.02 3.71
3302 3712 9.407380 TCCATGAACAAGTTACTAAATATGCAT 57.593 29.630 3.79 3.79 0.00 3.96
3412 3904 4.155099 TGTCAGGGTAACATATTTTGCACG 59.845 41.667 0.00 0.00 39.74 5.34
3496 3989 2.483491 GGTTGCAGCTTCTTTCTCTCAG 59.517 50.000 0.00 0.00 0.00 3.35
3557 4050 7.012704 GCTGGATGCAAGAAAGATTCATACTAA 59.987 37.037 0.00 0.00 42.31 2.24
3558 4051 6.484643 GCTGGATGCAAGAAAGATTCATACTA 59.515 38.462 0.00 0.00 42.31 1.82
3614 4125 6.373774 AGTTTCATATTTCAGTGAGAGCCAAG 59.626 38.462 0.00 0.00 0.00 3.61
3677 4190 2.652590 GCTGGATGCAGGAAAGATTCT 58.347 47.619 16.65 0.00 42.31 2.40
3735 4248 4.511826 GCTAGTAATTCACATACTGCACCC 59.488 45.833 0.00 0.00 35.34 4.61
3741 4254 6.070767 ACCACTGTGCTAGTAATTCACATACT 60.071 38.462 1.29 0.00 39.62 2.12
3807 4321 1.089920 CAATTCTCCTCAACCCTGCG 58.910 55.000 0.00 0.00 0.00 5.18
4440 5046 7.800380 CGAATATGCATACAGAAATCCAACTTC 59.200 37.037 8.99 3.43 0.00 3.01
4608 5335 6.512415 CGAACTTCTCTCATGACTTTTGCTTT 60.512 38.462 0.00 0.00 0.00 3.51
4621 5348 2.610479 GCACATGGACGAACTTCTCTCA 60.610 50.000 0.00 0.00 0.00 3.27
4656 5383 3.033185 CCACGCAAACTTAAACAAGACG 58.967 45.455 0.00 0.00 0.00 4.18
4683 5410 8.184192 CCATGAACAGATTGGTTAACTTCATAC 58.816 37.037 13.48 0.00 0.00 2.39
4686 5413 6.016360 CACCATGAACAGATTGGTTAACTTCA 60.016 38.462 5.42 6.15 41.77 3.02
4687 5414 6.381801 CACCATGAACAGATTGGTTAACTTC 58.618 40.000 5.42 0.34 41.77 3.01
4746 5473 9.553064 TGCATGTTAAATGGTAATTTCAAAACT 57.447 25.926 0.00 0.00 37.23 2.66
4825 5557 1.403814 TCCTCAGCTTACGATCCCTG 58.596 55.000 0.00 0.00 0.00 4.45
4969 5701 1.001641 CTTGGCTTCCCTGTCCTGG 60.002 63.158 0.00 0.00 0.00 4.45
5053 5787 1.079127 GGTCTCCATGGTCCACACG 60.079 63.158 12.58 0.00 0.00 4.49
5062 5796 3.332919 GAATCATCCATCGGTCTCCATG 58.667 50.000 0.00 0.00 0.00 3.66
5161 5896 5.010282 ACCCTGTCTATGAAATTCAACACC 58.990 41.667 0.00 0.00 0.00 4.16
5212 5980 5.715434 AGTTCCTCTACTCAACTCAACTC 57.285 43.478 0.00 0.00 0.00 3.01
5231 6001 3.202829 TGAGCGTTTCCAGGTTTAGTT 57.797 42.857 0.00 0.00 0.00 2.24
5271 6043 6.128363 CCAGTTACAGGTTTAGGATCGAAAAC 60.128 42.308 11.26 11.26 35.34 2.43
5306 6078 7.849026 GCATAATGCATTGAGTTTTATTTGCAG 59.151 33.333 22.27 0.00 44.26 4.41
5338 6110 8.893219 TCAAGATATGAATGTGAACCTACATC 57.107 34.615 0.00 0.00 40.24 3.06
5367 6139 3.069586 TCGACCTGATAAATCATCCGCTT 59.930 43.478 0.00 0.00 36.02 4.68
5371 6143 4.264460 AGCTCGACCTGATAAATCATCC 57.736 45.455 0.00 0.00 36.02 3.51
5521 8589 1.798813 CTTAGAAACTGTGCGTCCCAC 59.201 52.381 0.00 0.00 44.90 4.61
5527 8595 1.635663 CCGGGCTTAGAAACTGTGCG 61.636 60.000 0.00 0.00 0.00 5.34
5531 8599 0.323629 TCACCCGGGCTTAGAAACTG 59.676 55.000 24.08 8.18 0.00 3.16
5539 8607 0.475044 TTTACTGTTCACCCGGGCTT 59.525 50.000 24.08 0.00 0.00 4.35
5585 8655 7.344910 TGAAACTTTTGTCAATGTTTGTCAC 57.655 32.000 16.75 7.52 39.28 3.67
5586 8656 7.655328 ACTTGAAACTTTTGTCAATGTTTGTCA 59.345 29.630 16.75 10.10 39.28 3.58
5587 8657 7.951565 CACTTGAAACTTTTGTCAATGTTTGTC 59.048 33.333 16.75 8.35 39.28 3.18
5588 8658 7.571059 GCACTTGAAACTTTTGTCAATGTTTGT 60.571 33.333 16.75 9.44 39.28 2.83
5589 8659 6.737750 GCACTTGAAACTTTTGTCAATGTTTG 59.262 34.615 16.75 9.00 39.28 2.93
5590 8660 6.650390 AGCACTTGAAACTTTTGTCAATGTTT 59.350 30.769 13.57 13.57 40.94 2.83
5591 8661 6.165577 AGCACTTGAAACTTTTGTCAATGTT 58.834 32.000 0.00 0.00 33.45 2.71
5592 8662 5.723295 AGCACTTGAAACTTTTGTCAATGT 58.277 33.333 0.00 0.00 33.45 2.71
5593 8663 6.471839 CAAGCACTTGAAACTTTTGTCAATG 58.528 36.000 4.31 0.00 42.93 2.82
5594 8664 5.063817 GCAAGCACTTGAAACTTTTGTCAAT 59.936 36.000 14.44 0.00 42.93 2.57
5595 8665 4.388469 GCAAGCACTTGAAACTTTTGTCAA 59.612 37.500 14.44 0.00 42.93 3.18
5608 8678 3.551082 TGACGAATTTTTGCAAGCACTTG 59.449 39.130 6.01 6.01 43.14 3.16
5627 8697 5.344743 TTCTAGGAATGTGACCTCATGAC 57.655 43.478 0.00 0.00 38.76 3.06
5633 8703 3.261897 CACACCTTCTAGGAATGTGACCT 59.738 47.826 17.67 0.00 42.02 3.85
5634 8704 3.600388 CACACCTTCTAGGAATGTGACC 58.400 50.000 17.67 0.00 42.02 4.02
5635 8705 3.600388 CCACACCTTCTAGGAATGTGAC 58.400 50.000 17.67 0.00 42.02 3.67
5706 8776 4.261578 ACAAATCCAGTGCTCCAAAATG 57.738 40.909 0.00 0.00 0.00 2.32
5708 8778 4.751767 AAACAAATCCAGTGCTCCAAAA 57.248 36.364 0.00 0.00 0.00 2.44
5712 8782 4.176271 GCATAAAACAAATCCAGTGCTCC 58.824 43.478 0.00 0.00 0.00 4.70
5713 8783 4.176271 GGCATAAAACAAATCCAGTGCTC 58.824 43.478 0.00 0.00 0.00 4.26
5714 8784 3.577848 TGGCATAAAACAAATCCAGTGCT 59.422 39.130 0.00 0.00 0.00 4.40
5715 8785 3.679502 GTGGCATAAAACAAATCCAGTGC 59.320 43.478 0.00 0.00 0.00 4.40
5716 8786 3.919804 CGTGGCATAAAACAAATCCAGTG 59.080 43.478 0.00 0.00 0.00 3.66
5717 8787 3.613910 GCGTGGCATAAAACAAATCCAGT 60.614 43.478 0.00 0.00 0.00 4.00
5718 8788 2.923020 GCGTGGCATAAAACAAATCCAG 59.077 45.455 0.00 0.00 0.00 3.86
5719 8789 2.353208 GGCGTGGCATAAAACAAATCCA 60.353 45.455 0.00 0.00 0.00 3.41
5720 8790 2.094234 AGGCGTGGCATAAAACAAATCC 60.094 45.455 0.00 0.00 0.00 3.01
5721 8791 3.230743 AGGCGTGGCATAAAACAAATC 57.769 42.857 0.00 0.00 0.00 2.17
5722 8792 3.676291 AAGGCGTGGCATAAAACAAAT 57.324 38.095 0.00 0.00 0.00 2.32
5723 8793 3.318275 TGTAAGGCGTGGCATAAAACAAA 59.682 39.130 0.00 0.00 0.00 2.83
5724 8794 2.885266 TGTAAGGCGTGGCATAAAACAA 59.115 40.909 0.00 0.00 0.00 2.83
5725 8795 2.486203 CTGTAAGGCGTGGCATAAAACA 59.514 45.455 0.00 0.00 0.00 2.83
5726 8796 3.131240 CTGTAAGGCGTGGCATAAAAC 57.869 47.619 0.00 0.00 0.00 2.43
5770 8840 8.091449 TGTGACAAAACTTTTAAGTGTTTGGAT 58.909 29.630 20.88 10.63 39.07 3.41
5772 8842 7.644986 TGTGACAAAACTTTTAAGTGTTTGG 57.355 32.000 20.88 7.91 39.07 3.28
5829 8899 7.830934 CTCAAATGAGCTCGTTCAAACGATAAA 60.831 37.037 21.19 5.70 45.22 1.40
5830 8900 6.401047 CTCAAATGAGCTCGTTCAAACGATAA 60.401 38.462 21.19 5.40 45.22 1.75
5831 8901 5.062183 CTCAAATGAGCTCGTTCAAACGATA 59.938 40.000 21.19 6.35 45.22 2.92
5832 8902 4.143030 CTCAAATGAGCTCGTTCAAACGAT 60.143 41.667 21.19 4.88 45.22 3.73
5833 8903 3.184379 CTCAAATGAGCTCGTTCAAACGA 59.816 43.478 21.19 16.27 45.75 3.85
5834 8904 3.473367 CTCAAATGAGCTCGTTCAAACG 58.527 45.455 21.19 8.93 43.32 3.60
5846 8916 2.548875 CTTCTCCCGAGCTCAAATGAG 58.451 52.381 15.40 12.62 44.75 2.90
5847 8917 1.208052 CCTTCTCCCGAGCTCAAATGA 59.792 52.381 15.40 3.50 0.00 2.57
5848 8918 1.208052 TCCTTCTCCCGAGCTCAAATG 59.792 52.381 15.40 0.94 0.00 2.32
5849 8919 1.208293 GTCCTTCTCCCGAGCTCAAAT 59.792 52.381 15.40 0.00 0.00 2.32
5850 8920 0.608640 GTCCTTCTCCCGAGCTCAAA 59.391 55.000 15.40 0.00 0.00 2.69
5851 8921 0.541998 TGTCCTTCTCCCGAGCTCAA 60.542 55.000 15.40 0.00 0.00 3.02
5852 8922 1.076727 TGTCCTTCTCCCGAGCTCA 59.923 57.895 15.40 0.00 0.00 4.26
5853 8923 0.968393 AGTGTCCTTCTCCCGAGCTC 60.968 60.000 2.73 2.73 0.00 4.09
5854 8924 0.543174 AAGTGTCCTTCTCCCGAGCT 60.543 55.000 0.00 0.00 0.00 4.09
5855 8925 0.321996 AAAGTGTCCTTCTCCCGAGC 59.678 55.000 0.00 0.00 0.00 5.03
5856 8926 2.224305 ACAAAAGTGTCCTTCTCCCGAG 60.224 50.000 0.00 0.00 29.49 4.63
5857 8927 1.766496 ACAAAAGTGTCCTTCTCCCGA 59.234 47.619 0.00 0.00 29.49 5.14
5858 8928 2.256117 ACAAAAGTGTCCTTCTCCCG 57.744 50.000 0.00 0.00 29.49 5.14
5859 8929 6.051179 AGTATACAAAAGTGTCCTTCTCCC 57.949 41.667 5.50 0.00 39.30 4.30
5860 8930 6.935208 ACAAGTATACAAAAGTGTCCTTCTCC 59.065 38.462 5.50 0.00 39.30 3.71
5861 8931 7.873505 AGACAAGTATACAAAAGTGTCCTTCTC 59.126 37.037 5.50 0.00 39.30 2.87
5862 8932 7.657761 CAGACAAGTATACAAAAGTGTCCTTCT 59.342 37.037 5.50 0.00 39.30 2.85
5863 8933 7.441458 ACAGACAAGTATACAAAAGTGTCCTTC 59.559 37.037 5.50 0.00 39.30 3.46
5864 8934 7.226720 CACAGACAAGTATACAAAAGTGTCCTT 59.773 37.037 5.50 0.00 39.30 3.36
5865 8935 6.706270 CACAGACAAGTATACAAAAGTGTCCT 59.294 38.462 5.50 0.00 39.30 3.85
5866 8936 6.482308 ACACAGACAAGTATACAAAAGTGTCC 59.518 38.462 5.50 0.00 39.30 4.02
5867 8937 7.345192 CACACAGACAAGTATACAAAAGTGTC 58.655 38.462 5.50 9.83 39.30 3.67
5868 8938 6.238374 GCACACAGACAAGTATACAAAAGTGT 60.238 38.462 5.50 8.89 42.09 3.55
5869 8939 6.017934 AGCACACAGACAAGTATACAAAAGTG 60.018 38.462 5.50 8.31 0.00 3.16
5870 8940 6.017934 CAGCACACAGACAAGTATACAAAAGT 60.018 38.462 5.50 0.00 0.00 2.66
5871 8941 6.017934 ACAGCACACAGACAAGTATACAAAAG 60.018 38.462 5.50 0.00 0.00 2.27
5872 8942 5.820423 ACAGCACACAGACAAGTATACAAAA 59.180 36.000 5.50 0.00 0.00 2.44
5873 8943 5.364778 ACAGCACACAGACAAGTATACAAA 58.635 37.500 5.50 0.00 0.00 2.83
5874 8944 4.956085 ACAGCACACAGACAAGTATACAA 58.044 39.130 5.50 0.00 0.00 2.41
5875 8945 4.600692 ACAGCACACAGACAAGTATACA 57.399 40.909 5.50 0.00 0.00 2.29
5876 8946 6.387465 TCTAACAGCACACAGACAAGTATAC 58.613 40.000 0.00 0.00 0.00 1.47
5877 8947 6.584185 TCTAACAGCACACAGACAAGTATA 57.416 37.500 0.00 0.00 0.00 1.47
5878 8948 5.468540 TCTAACAGCACACAGACAAGTAT 57.531 39.130 0.00 0.00 0.00 2.12
5879 8949 4.929819 TCTAACAGCACACAGACAAGTA 57.070 40.909 0.00 0.00 0.00 2.24
5880 8950 3.819564 TCTAACAGCACACAGACAAGT 57.180 42.857 0.00 0.00 0.00 3.16
5881 8951 3.434641 CCATCTAACAGCACACAGACAAG 59.565 47.826 0.00 0.00 0.00 3.16
5882 8952 3.181455 ACCATCTAACAGCACACAGACAA 60.181 43.478 0.00 0.00 0.00 3.18
5883 8953 2.368548 ACCATCTAACAGCACACAGACA 59.631 45.455 0.00 0.00 0.00 3.41
5884 8954 3.045601 ACCATCTAACAGCACACAGAC 57.954 47.619 0.00 0.00 0.00 3.51
5885 8955 4.882842 TTACCATCTAACAGCACACAGA 57.117 40.909 0.00 0.00 0.00 3.41
5886 8956 5.940192 TTTTACCATCTAACAGCACACAG 57.060 39.130 0.00 0.00 0.00 3.66
5887 8957 7.987750 TTATTTTACCATCTAACAGCACACA 57.012 32.000 0.00 0.00 0.00 3.72
5891 8961 8.717821 GCGATATTATTTTACCATCTAACAGCA 58.282 33.333 0.00 0.00 0.00 4.41
5892 8962 8.717821 TGCGATATTATTTTACCATCTAACAGC 58.282 33.333 0.00 0.00 0.00 4.40
5920 8990 9.142515 CGGTCCAGCGTTTGTATAATATAATAA 57.857 33.333 0.00 0.00 0.00 1.40
5921 8991 7.760794 CCGGTCCAGCGTTTGTATAATATAATA 59.239 37.037 0.00 0.00 0.00 0.98
5922 8992 6.592607 CCGGTCCAGCGTTTGTATAATATAAT 59.407 38.462 0.00 0.00 0.00 1.28
5923 8993 5.927689 CCGGTCCAGCGTTTGTATAATATAA 59.072 40.000 0.00 0.00 0.00 0.98
5924 8994 5.472148 CCGGTCCAGCGTTTGTATAATATA 58.528 41.667 0.00 0.00 0.00 0.86
5925 8995 4.312443 CCGGTCCAGCGTTTGTATAATAT 58.688 43.478 0.00 0.00 0.00 1.28
5926 8996 3.719924 CCGGTCCAGCGTTTGTATAATA 58.280 45.455 0.00 0.00 0.00 0.98
5927 8997 2.557317 CCGGTCCAGCGTTTGTATAAT 58.443 47.619 0.00 0.00 0.00 1.28
5928 8998 2.008045 GCCGGTCCAGCGTTTGTATAA 61.008 52.381 1.90 0.00 0.00 0.98
5929 8999 0.460635 GCCGGTCCAGCGTTTGTATA 60.461 55.000 1.90 0.00 0.00 1.47
5930 9000 1.743995 GCCGGTCCAGCGTTTGTAT 60.744 57.895 1.90 0.00 0.00 2.29
5931 9001 2.357760 GCCGGTCCAGCGTTTGTA 60.358 61.111 1.90 0.00 0.00 2.41
5941 9011 2.731691 ATATGCATCACCGCCGGTCC 62.732 60.000 5.41 0.00 31.02 4.46
5942 9012 0.884704 AATATGCATCACCGCCGGTC 60.885 55.000 5.41 0.00 31.02 4.79
5943 9013 0.465460 AAATATGCATCACCGCCGGT 60.465 50.000 1.02 1.02 35.62 5.28
5944 9014 0.040157 CAAATATGCATCACCGCCGG 60.040 55.000 0.19 0.00 0.00 6.13
5945 9015 0.943673 TCAAATATGCATCACCGCCG 59.056 50.000 0.19 0.00 0.00 6.46
5946 9016 2.816087 AGATCAAATATGCATCACCGCC 59.184 45.455 0.19 0.00 0.00 6.13
5947 9017 4.224433 CAAGATCAAATATGCATCACCGC 58.776 43.478 0.19 0.00 0.00 5.68
5948 9018 4.276678 ACCAAGATCAAATATGCATCACCG 59.723 41.667 0.19 0.00 0.00 4.94
5949 9019 5.779529 ACCAAGATCAAATATGCATCACC 57.220 39.130 0.19 0.00 0.00 4.02
5950 9020 7.502120 ACTACCAAGATCAAATATGCATCAC 57.498 36.000 0.19 0.00 0.00 3.06
5951 9021 8.650490 TCTACTACCAAGATCAAATATGCATCA 58.350 33.333 0.19 0.00 0.00 3.07
5952 9022 9.494271 TTCTACTACCAAGATCAAATATGCATC 57.506 33.333 0.19 0.00 0.00 3.91
5953 9023 9.277783 GTTCTACTACCAAGATCAAATATGCAT 57.722 33.333 3.79 3.79 0.00 3.96
5954 9024 7.715249 GGTTCTACTACCAAGATCAAATATGCA 59.285 37.037 0.00 0.00 38.12 3.96
5955 9025 7.715249 TGGTTCTACTACCAAGATCAAATATGC 59.285 37.037 0.00 0.00 44.97 3.14
5968 9038 3.514309 GGAAGCTCTTGGTTCTACTACCA 59.486 47.826 7.69 0.00 46.47 3.25
5969 9039 3.514309 TGGAAGCTCTTGGTTCTACTACC 59.486 47.826 7.69 0.00 46.47 3.18
5970 9040 4.803098 TGGAAGCTCTTGGTTCTACTAC 57.197 45.455 7.69 0.00 46.47 2.73
5971 9041 5.818678 TTTGGAAGCTCTTGGTTCTACTA 57.181 39.130 7.69 0.00 46.47 1.82
5972 9042 4.706842 TTTGGAAGCTCTTGGTTCTACT 57.293 40.909 7.69 0.00 46.47 2.57
5973 9043 5.767816 TTTTTGGAAGCTCTTGGTTCTAC 57.232 39.130 7.69 0.00 46.47 2.59
5995 9065 8.533569 TGGAAATTCTCTTGGTTCTACTTTTT 57.466 30.769 0.00 0.00 0.00 1.94
5996 9066 8.579863 CATGGAAATTCTCTTGGTTCTACTTTT 58.420 33.333 0.00 0.00 0.00 2.27
5997 9067 7.725844 ACATGGAAATTCTCTTGGTTCTACTTT 59.274 33.333 0.00 0.00 0.00 2.66
5998 9068 7.234355 ACATGGAAATTCTCTTGGTTCTACTT 58.766 34.615 0.00 0.00 0.00 2.24
5999 9069 6.784031 ACATGGAAATTCTCTTGGTTCTACT 58.216 36.000 0.00 0.00 0.00 2.57
6000 9070 8.738645 ATACATGGAAATTCTCTTGGTTCTAC 57.261 34.615 0.00 0.00 0.00 2.59
6001 9071 9.753674 AAATACATGGAAATTCTCTTGGTTCTA 57.246 29.630 0.00 0.00 0.00 2.10
6002 9072 8.655935 AAATACATGGAAATTCTCTTGGTTCT 57.344 30.769 0.00 0.00 0.00 3.01
6003 9073 9.710900 AAAAATACATGGAAATTCTCTTGGTTC 57.289 29.630 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.