Multiple sequence alignment - TraesCS6D01G377800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G377800 chr6D 100.000 7543 0 0 1 7543 460475237 460467695 0.000000e+00 13930.0
1 TraesCS6D01G377800 chr6D 86.614 127 16 1 2829 2955 299890571 299890696 1.020000e-28 139.0
2 TraesCS6D01G377800 chr6D 96.774 31 1 0 2829 2859 410397016 410396986 1.400000e-02 52.8
3 TraesCS6D01G377800 chrUn 95.104 4187 145 17 637 4809 74646791 74650931 0.000000e+00 6541.0
4 TraesCS6D01G377800 chrUn 95.584 3872 135 11 947 4809 229395182 229391338 0.000000e+00 6170.0
5 TraesCS6D01G377800 chrUn 88.011 1785 100 47 5803 7543 74652005 74653719 0.000000e+00 2006.0
6 TraesCS6D01G377800 chrUn 88.011 1785 100 47 5803 7543 229390264 229388550 0.000000e+00 2006.0
7 TraesCS6D01G377800 chrUn 98.039 918 15 1 4889 5803 74650928 74651845 0.000000e+00 1592.0
8 TraesCS6D01G377800 chrUn 97.937 921 16 1 4889 5806 229391341 229390421 0.000000e+00 1592.0
9 TraesCS6D01G377800 chrUn 85.325 477 59 5 1 466 74646216 74646692 4.090000e-132 483.0
10 TraesCS6D01G377800 chr6B 94.197 3705 124 28 1124 4809 701392697 701389065 0.000000e+00 5566.0
11 TraesCS6D01G377800 chr6B 86.564 1563 101 47 5915 7449 701387580 701386099 0.000000e+00 1622.0
12 TraesCS6D01G377800 chr6B 97.574 577 9 2 4889 5460 701389068 701388492 0.000000e+00 983.0
13 TraesCS6D01G377800 chr6B 91.667 672 36 8 268 922 701394148 701393480 0.000000e+00 913.0
14 TraesCS6D01G377800 chr6B 86.184 608 61 6 6869 7471 701384854 701384265 2.970000e-178 636.0
15 TraesCS6D01G377800 chr6B 98.584 353 5 0 5454 5806 701388172 701387820 6.430000e-175 625.0
16 TraesCS6D01G377800 chr6B 85.505 614 64 10 6869 7471 701386076 701385477 1.080000e-172 617.0
17 TraesCS6D01G377800 chr6B 85.179 614 66 10 6869 7471 701385465 701384866 2.330000e-169 606.0
18 TraesCS6D01G377800 chr6B 85.179 614 59 13 6869 7471 701384253 701383661 1.080000e-167 601.0
19 TraesCS6D01G377800 chr6B 90.722 194 15 3 1 192 701394603 701394411 9.710000e-64 255.0
20 TraesCS6D01G377800 chr6B 83.333 120 14 2 2829 2948 464910356 464910469 1.040000e-18 106.0
21 TraesCS6D01G377800 chr6B 100.000 44 0 0 7500 7543 701383371 701383328 1.740000e-11 82.4
22 TraesCS6D01G377800 chr3D 82.138 711 77 24 1947 2645 486540676 486541348 1.420000e-156 564.0
23 TraesCS6D01G377800 chr3D 90.099 202 13 3 3025 3219 486541509 486541710 9.710000e-64 255.0
24 TraesCS6D01G377800 chr3D 90.351 114 5 6 4806 4916 22678597 22678487 2.190000e-30 145.0
25 TraesCS6D01G377800 chr3D 96.552 87 3 0 4806 4892 22768361 22768447 2.190000e-30 145.0
26 TraesCS6D01G377800 chr5D 96.809 94 3 0 4799 4892 34074208 34074115 2.820000e-34 158.0
27 TraesCS6D01G377800 chr5D 95.876 97 4 0 4806 4902 57225961 57226057 2.820000e-34 158.0
28 TraesCS6D01G377800 chr3A 95.876 97 4 0 4801 4897 697782218 697782314 2.820000e-34 158.0
29 TraesCS6D01G377800 chr3A 90.654 107 7 3 4808 4912 516801727 516801832 1.020000e-28 139.0
30 TraesCS6D01G377800 chr2B 93.333 105 3 3 4804 4906 31741628 31741730 1.310000e-32 152.0
31 TraesCS6D01G377800 chr1A 94.059 101 5 1 4804 4903 592316864 592316764 1.310000e-32 152.0
32 TraesCS6D01G377800 chr5A 92.308 104 8 0 4797 4900 19975717 19975820 1.700000e-31 148.0
33 TraesCS6D01G377800 chr5A 80.282 142 9 9 1716 1854 414515665 414515790 1.040000e-13 89.8
34 TraesCS6D01G377800 chr6A 87.097 93 11 1 2829 2921 417639467 417639376 3.720000e-18 104.0
35 TraesCS6D01G377800 chr6A 96.774 31 1 0 2829 2859 555727927 555727897 1.400000e-02 52.8
36 TraesCS6D01G377800 chr4A 100.000 30 0 0 2921 2950 589783278 589783307 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G377800 chr6D 460467695 460475237 7542 True 13930.000000 13930 100.000000 1 7543 1 chr6D.!!$R2 7542
1 TraesCS6D01G377800 chrUn 229388550 229395182 6632 True 3256.000000 6170 93.844000 947 7543 3 chrUn.!!$R1 6596
2 TraesCS6D01G377800 chrUn 74646216 74653719 7503 False 2655.500000 6541 91.619750 1 7543 4 chrUn.!!$F1 7542
3 TraesCS6D01G377800 chr6B 701383328 701394603 11275 True 1136.945455 5566 91.032273 1 7543 11 chr6B.!!$R1 7542
4 TraesCS6D01G377800 chr3D 486540676 486541710 1034 False 409.500000 564 86.118500 1947 3219 2 chr3D.!!$F2 1272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 1168 0.035439 TGACAATTTCCTCCGCCTCC 60.035 55.000 0.00 0.00 0.00 4.30 F
1450 2270 0.248661 CGGTGCTCTCAGTGATACCG 60.249 60.000 17.91 17.91 43.56 4.02 F
1735 2555 0.462047 ATCCGTGAGTGAATTCGGGC 60.462 55.000 0.04 0.00 42.71 6.13 F
1802 2622 0.730265 GTGAACTGAACCAACACGCA 59.270 50.000 0.00 0.00 0.00 5.24 F
1803 2623 0.730265 TGAACTGAACCAACACGCAC 59.270 50.000 0.00 0.00 0.00 5.34 F
1889 2725 1.066143 TGCCTTTCTGCTACCAGCTAC 60.066 52.381 0.00 0.00 42.97 3.58 F
2863 3714 1.224592 CCCGCCTTGGATGCTTAGT 59.775 57.895 0.00 0.00 42.00 2.24 F
4168 5028 0.978667 TTGCACCCCATCTACGGCTA 60.979 55.000 0.00 0.00 0.00 3.93 F
4818 5679 2.026822 CCATGCAAAGTACTCCCTCTGT 60.027 50.000 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 2618 0.888736 TACAGCAAGGCAATGTGCGT 60.889 50.000 0.00 0.0 46.21 5.24 R
2568 3418 1.882623 GCAGAACCTTTTGGACTCCAG 59.117 52.381 0.00 0.0 44.07 3.86 R
3517 4376 3.572642 TCTCATTATAGAGGGCGAACCA 58.427 45.455 0.00 0.0 43.89 3.67 R
3590 4450 4.142071 TGGCAGACAACAGCACAAATTAAA 60.142 37.500 0.00 0.0 0.00 1.52 R
3840 4700 7.011295 GCAAGGTTTTCAGTTCAAAAATGATGA 59.989 33.333 0.00 0.0 0.00 2.92 R
3878 4738 4.789012 AAGCATTTGGAATGTGTACTGG 57.211 40.909 0.00 0.0 0.00 4.00 R
4880 5741 3.395273 AGCTACTTAGATACTCCCTCCGT 59.605 47.826 0.00 0.0 0.00 4.69 R
5370 6234 1.180029 GCCTAGGTACAACGAGACCA 58.820 55.000 11.31 0.0 38.27 4.02 R
6618 7992 0.179000 AAGCAATCTACCTCGCCCTG 59.821 55.000 0.00 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.203139 CACACCACGTGCTCCCAA 60.203 61.111 10.91 0.00 39.19 4.12
62 63 3.908081 AACCGTCGACCGTGCAGT 61.908 61.111 10.58 0.00 33.66 4.40
83 84 3.379445 ACCCGTAGCTCACACCGG 61.379 66.667 0.00 0.00 40.12 5.28
172 173 2.421619 GGCAGAAGAGGAAGACAACAG 58.578 52.381 0.00 0.00 0.00 3.16
175 176 3.470709 CAGAAGAGGAAGACAACAGCAA 58.529 45.455 0.00 0.00 0.00 3.91
219 223 2.955614 CGAAGCCGTTTCCTTTCTCTA 58.044 47.619 0.00 0.00 31.82 2.43
223 227 2.074576 GCCGTTTCCTTTCTCTACACC 58.925 52.381 0.00 0.00 0.00 4.16
232 236 0.613853 TTCTCTACACCGACCCCCAG 60.614 60.000 0.00 0.00 0.00 4.45
233 237 2.682494 TCTACACCGACCCCCAGC 60.682 66.667 0.00 0.00 0.00 4.85
234 238 4.143333 CTACACCGACCCCCAGCG 62.143 72.222 0.00 0.00 0.00 5.18
247 443 4.722193 CAGCGGTTGGAATGTCCT 57.278 55.556 0.00 0.00 37.46 3.85
249 445 0.804989 CAGCGGTTGGAATGTCCTTC 59.195 55.000 0.00 0.00 37.46 3.46
258 454 0.992802 GAATGTCCTTCGAGACGCAC 59.007 55.000 0.94 0.00 39.77 5.34
260 456 1.532604 ATGTCCTTCGAGACGCACCA 61.533 55.000 0.94 0.00 39.77 4.17
266 462 1.600511 TTCGAGACGCACCATGGCTA 61.601 55.000 13.04 0.00 0.00 3.93
284 480 2.930040 GCTAGAGCAAGCAACACGATTA 59.070 45.455 0.00 0.00 42.30 1.75
295 491 3.991773 GCAACACGATTAAGTACACCTCA 59.008 43.478 0.00 0.00 0.00 3.86
299 495 4.042398 CACGATTAAGTACACCTCATCCG 58.958 47.826 0.00 0.00 0.00 4.18
330 526 4.101430 TCGACCCAAACCTAGTAAACAACT 59.899 41.667 0.00 0.00 42.62 3.16
360 556 4.090057 GCAACGAACCAGCCGCTC 62.090 66.667 0.00 0.00 0.00 5.03
396 592 2.621000 GCGTCCTAAAGCATCGCG 59.379 61.111 0.00 0.00 37.74 5.87
425 621 2.684881 ACATGCCATCATTTTCCGAGAC 59.315 45.455 0.00 0.00 0.00 3.36
433 629 5.525378 CCATCATTTTCCGAGACCTTAGAAG 59.475 44.000 0.00 0.00 0.00 2.85
437 633 1.380524 TCCGAGACCTTAGAAGCTCG 58.619 55.000 0.00 0.00 47.00 5.03
477 673 1.885163 TTCTTCCTCTCGAACCGCCC 61.885 60.000 0.00 0.00 0.00 6.13
528 724 7.076842 ACATTGTAGACATTTATGCTGTGTC 57.923 36.000 0.00 0.00 41.88 3.67
621 825 1.576421 GCAACGCTGAACAAGGAGG 59.424 57.895 0.00 0.00 0.00 4.30
656 880 1.247567 CAAGTGACAATGGGACCCAC 58.752 55.000 17.78 3.20 35.80 4.61
756 982 1.678123 GGGCATCATCCATCTCATCGG 60.678 57.143 0.00 0.00 0.00 4.18
922 1160 4.325344 CCCTACCTCCATTGACAATTTCCT 60.325 45.833 0.00 0.00 0.00 3.36
925 1163 2.684881 CCTCCATTGACAATTTCCTCCG 59.315 50.000 0.00 0.00 0.00 4.63
928 1166 2.094675 CATTGACAATTTCCTCCGCCT 58.905 47.619 0.00 0.00 0.00 5.52
929 1167 1.821216 TTGACAATTTCCTCCGCCTC 58.179 50.000 0.00 0.00 0.00 4.70
930 1168 0.035439 TGACAATTTCCTCCGCCTCC 60.035 55.000 0.00 0.00 0.00 4.30
931 1169 0.748367 GACAATTTCCTCCGCCTCCC 60.748 60.000 0.00 0.00 0.00 4.30
932 1170 1.453928 CAATTTCCTCCGCCTCCCC 60.454 63.158 0.00 0.00 0.00 4.81
933 1171 2.690734 AATTTCCTCCGCCTCCCCC 61.691 63.158 0.00 0.00 0.00 5.40
1086 1324 0.684805 CCAGTAACGCCCTCTCCTCT 60.685 60.000 0.00 0.00 0.00 3.69
1087 1325 1.187087 CAGTAACGCCCTCTCCTCTT 58.813 55.000 0.00 0.00 0.00 2.85
1296 2115 2.489971 GATCGCCGTTTCCCAATCATA 58.510 47.619 0.00 0.00 0.00 2.15
1326 2145 7.595130 TGTCGAATGATTATTTATGTCGAGGAG 59.405 37.037 0.00 0.00 0.00 3.69
1349 2169 3.391382 AGTAGGTGGTCCGCTGGC 61.391 66.667 1.66 0.00 39.05 4.85
1450 2270 0.248661 CGGTGCTCTCAGTGATACCG 60.249 60.000 17.91 17.91 43.56 4.02
1495 2315 6.166279 TCAATCAGTCACAGGTGATTTAGTC 58.834 40.000 5.29 0.00 40.64 2.59
1504 2324 6.072508 TCACAGGTGATTTAGTCTTTTCATGC 60.073 38.462 0.00 0.00 34.14 4.06
1556 2376 1.476085 TGCATACCATTTTTCGCTGGG 59.524 47.619 0.00 0.00 36.82 4.45
1585 2405 5.731263 GGTGAGCGTTTCGTGATTTATTTAC 59.269 40.000 0.00 0.00 0.00 2.01
1586 2406 6.301108 GTGAGCGTTTCGTGATTTATTTACA 58.699 36.000 0.00 0.00 0.00 2.41
1617 2437 5.565834 CGGTTGGTGCCATGTAGTAAAAATT 60.566 40.000 0.00 0.00 0.00 1.82
1655 2475 2.700897 AGGTAGCATAGGTGACATGGAC 59.299 50.000 0.00 0.00 0.00 4.02
1671 2491 1.843206 TGGACGATGGATCAATCCCAA 59.157 47.619 4.42 0.00 46.59 4.12
1724 2544 1.004560 AGGTGTGTGCATCCGTGAG 60.005 57.895 0.00 0.00 0.00 3.51
1731 2551 2.076100 TGTGCATCCGTGAGTGAATTC 58.924 47.619 0.00 0.00 0.00 2.17
1735 2555 0.462047 ATCCGTGAGTGAATTCGGGC 60.462 55.000 0.04 0.00 42.71 6.13
1745 2565 3.694566 AGTGAATTCGGGCATTTAGAACC 59.305 43.478 0.04 0.00 0.00 3.62
1764 2584 2.027377 ACCAAATCTGAGAGCTGACCAG 60.027 50.000 0.00 0.00 0.00 4.00
1788 2608 6.980397 AGATGAAATTGGTGTTTTCTGTGAAC 59.020 34.615 0.00 0.00 34.80 3.18
1795 2615 3.442273 GGTGTTTTCTGTGAACTGAACCA 59.558 43.478 2.63 1.34 34.31 3.67
1798 2618 4.520874 TGTTTTCTGTGAACTGAACCAACA 59.479 37.500 12.51 12.51 34.83 3.33
1802 2622 0.730265 GTGAACTGAACCAACACGCA 59.270 50.000 0.00 0.00 0.00 5.24
1803 2623 0.730265 TGAACTGAACCAACACGCAC 59.270 50.000 0.00 0.00 0.00 5.34
1811 2631 1.363443 CCAACACGCACATTGCCTT 59.637 52.632 0.00 0.00 41.12 4.35
1814 2634 1.737355 AACACGCACATTGCCTTGCT 61.737 50.000 0.00 0.00 41.12 3.91
1855 2691 2.679059 CGACCTCATGTGCTCCTGAAAT 60.679 50.000 0.00 0.00 0.00 2.17
1856 2692 2.941720 GACCTCATGTGCTCCTGAAATC 59.058 50.000 0.00 0.00 0.00 2.17
1883 2719 4.342862 TCAGATATGCCTTTCTGCTACC 57.657 45.455 4.88 0.00 39.36 3.18
1889 2725 1.066143 TGCCTTTCTGCTACCAGCTAC 60.066 52.381 0.00 0.00 42.97 3.58
1915 2751 2.175931 TGGGTGTACATGTTGTCCCTTT 59.824 45.455 23.05 0.00 34.14 3.11
1953 2791 2.035193 AGGCACAGCAGTAGATCATACG 59.965 50.000 0.00 0.00 0.00 3.06
1996 2837 3.066900 TCTCATTCGCTGCTTACTACTCC 59.933 47.826 0.00 0.00 0.00 3.85
2568 3418 1.363744 GTGCAGCTCTATGTGTCCAC 58.636 55.000 0.00 0.00 0.00 4.02
2863 3714 1.224592 CCCGCCTTGGATGCTTAGT 59.775 57.895 0.00 0.00 42.00 2.24
2896 3747 2.163412 CCTGCCAGCGCTTTACAATTAA 59.837 45.455 7.50 0.00 35.36 1.40
3152 4004 7.436118 AGTCGTGTACCTGTTTTGATTAACTA 58.564 34.615 0.00 0.00 0.00 2.24
3207 4066 6.377327 TTGATGAGTGTTTTCTTCTGTTCC 57.623 37.500 0.00 0.00 0.00 3.62
3208 4067 5.684704 TGATGAGTGTTTTCTTCTGTTCCT 58.315 37.500 0.00 0.00 0.00 3.36
3209 4068 5.528690 TGATGAGTGTTTTCTTCTGTTCCTG 59.471 40.000 0.00 0.00 0.00 3.86
3210 4069 3.627577 TGAGTGTTTTCTTCTGTTCCTGC 59.372 43.478 0.00 0.00 0.00 4.85
3211 4070 3.620488 AGTGTTTTCTTCTGTTCCTGCA 58.380 40.909 0.00 0.00 0.00 4.41
3212 4071 4.016444 AGTGTTTTCTTCTGTTCCTGCAA 58.984 39.130 0.00 0.00 0.00 4.08
3213 4072 4.646492 AGTGTTTTCTTCTGTTCCTGCAAT 59.354 37.500 0.00 0.00 0.00 3.56
3214 4073 5.127682 AGTGTTTTCTTCTGTTCCTGCAATT 59.872 36.000 0.00 0.00 0.00 2.32
3215 4074 6.321181 AGTGTTTTCTTCTGTTCCTGCAATTA 59.679 34.615 0.00 0.00 0.00 1.40
3216 4075 7.014615 AGTGTTTTCTTCTGTTCCTGCAATTAT 59.985 33.333 0.00 0.00 0.00 1.28
3217 4076 7.653311 GTGTTTTCTTCTGTTCCTGCAATTATT 59.347 33.333 0.00 0.00 0.00 1.40
3218 4077 7.652909 TGTTTTCTTCTGTTCCTGCAATTATTG 59.347 33.333 0.00 0.00 0.00 1.90
3219 4078 6.899393 TTCTTCTGTTCCTGCAATTATTGT 57.101 33.333 6.81 0.00 0.00 2.71
3220 4079 6.899393 TCTTCTGTTCCTGCAATTATTGTT 57.101 33.333 6.81 0.00 0.00 2.83
3221 4080 7.288810 TCTTCTGTTCCTGCAATTATTGTTT 57.711 32.000 6.81 0.00 0.00 2.83
3222 4081 7.725251 TCTTCTGTTCCTGCAATTATTGTTTT 58.275 30.769 6.81 0.00 0.00 2.43
3223 4082 7.867403 TCTTCTGTTCCTGCAATTATTGTTTTC 59.133 33.333 6.81 0.00 0.00 2.29
3224 4083 7.288810 TCTGTTCCTGCAATTATTGTTTTCT 57.711 32.000 6.81 0.00 0.00 2.52
3225 4084 7.725251 TCTGTTCCTGCAATTATTGTTTTCTT 58.275 30.769 6.81 0.00 0.00 2.52
3226 4085 7.867403 TCTGTTCCTGCAATTATTGTTTTCTTC 59.133 33.333 6.81 0.00 0.00 2.87
3227 4086 7.725251 TGTTCCTGCAATTATTGTTTTCTTCT 58.275 30.769 6.81 0.00 0.00 2.85
3228 4087 7.652909 TGTTCCTGCAATTATTGTTTTCTTCTG 59.347 33.333 6.81 0.00 0.00 3.02
3229 4088 7.288810 TCCTGCAATTATTGTTTTCTTCTGT 57.711 32.000 6.81 0.00 0.00 3.41
3230 4089 7.725251 TCCTGCAATTATTGTTTTCTTCTGTT 58.275 30.769 6.81 0.00 0.00 3.16
3231 4090 7.867403 TCCTGCAATTATTGTTTTCTTCTGTTC 59.133 33.333 6.81 0.00 0.00 3.18
3403 4262 5.814764 GCATAATATCATGCCTCTCCTTG 57.185 43.478 0.00 0.00 44.55 3.61
3590 4450 3.318313 CCCTTATCTGACTGTACCCCAT 58.682 50.000 0.00 0.00 0.00 4.00
3878 4738 5.719173 TGAAAACCTTGCCATTAATACAGC 58.281 37.500 0.00 0.00 0.00 4.40
3996 4856 7.882271 GGAGAGGTATTTGCTATTCATTGATCT 59.118 37.037 0.00 0.00 0.00 2.75
4007 4867 9.399797 TGCTATTCATTGATCTGTTAGTTCATT 57.600 29.630 0.00 0.00 0.00 2.57
4070 4930 8.508875 CAAATCTGCTTGCCAATTTCTTTATTT 58.491 29.630 0.00 0.00 0.00 1.40
4077 4937 7.624134 GCTTGCCAATTTCTTTATTTGCCTTAC 60.624 37.037 0.00 0.00 0.00 2.34
4087 4947 9.733556 TTCTTTATTTGCCTTACAGACTAATGA 57.266 29.630 0.00 0.00 0.00 2.57
4168 5028 0.978667 TTGCACCCCATCTACGGCTA 60.979 55.000 0.00 0.00 0.00 3.93
4332 5193 6.201806 GGACTATGCTTGCAGTGTCTTATTAG 59.798 42.308 20.89 9.98 0.00 1.73
4809 5670 6.016777 CCCTTTGATCTATCCATGCAAAGTAC 60.017 42.308 14.54 0.00 42.17 2.73
4810 5671 6.769822 CCTTTGATCTATCCATGCAAAGTACT 59.230 38.462 14.54 0.00 42.17 2.73
4811 5672 7.041508 CCTTTGATCTATCCATGCAAAGTACTC 60.042 40.741 14.54 0.00 42.17 2.59
4812 5673 5.858381 TGATCTATCCATGCAAAGTACTCC 58.142 41.667 0.00 0.00 0.00 3.85
4813 5674 4.689612 TCTATCCATGCAAAGTACTCCC 57.310 45.455 0.00 0.00 0.00 4.30
4814 5675 4.298626 TCTATCCATGCAAAGTACTCCCT 58.701 43.478 0.00 0.00 0.00 4.20
4815 5676 3.567478 ATCCATGCAAAGTACTCCCTC 57.433 47.619 0.00 0.00 0.00 4.30
4816 5677 2.551270 TCCATGCAAAGTACTCCCTCT 58.449 47.619 0.00 0.00 0.00 3.69
4817 5678 2.237143 TCCATGCAAAGTACTCCCTCTG 59.763 50.000 0.00 0.00 0.00 3.35
4818 5679 2.026822 CCATGCAAAGTACTCCCTCTGT 60.027 50.000 0.00 0.00 0.00 3.41
4819 5680 3.197766 CCATGCAAAGTACTCCCTCTGTA 59.802 47.826 0.00 0.00 0.00 2.74
4820 5681 4.323485 CCATGCAAAGTACTCCCTCTGTAA 60.323 45.833 0.00 0.00 0.00 2.41
4821 5682 4.967084 TGCAAAGTACTCCCTCTGTAAA 57.033 40.909 0.00 0.00 0.00 2.01
4822 5683 4.638304 TGCAAAGTACTCCCTCTGTAAAC 58.362 43.478 0.00 0.00 0.00 2.01
4823 5684 4.347000 TGCAAAGTACTCCCTCTGTAAACT 59.653 41.667 0.00 0.00 0.00 2.66
4824 5685 5.541101 TGCAAAGTACTCCCTCTGTAAACTA 59.459 40.000 0.00 0.00 0.00 2.24
4825 5686 6.042322 TGCAAAGTACTCCCTCTGTAAACTAA 59.958 38.462 0.00 0.00 0.00 2.24
4826 5687 7.104290 GCAAAGTACTCCCTCTGTAAACTAAT 58.896 38.462 0.00 0.00 0.00 1.73
4827 5688 8.255905 GCAAAGTACTCCCTCTGTAAACTAATA 58.744 37.037 0.00 0.00 0.00 0.98
4834 5695 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
4835 5696 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
4836 5697 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
4837 5698 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
4838 5699 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
4853 5714 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
4854 5715 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
4866 5727 5.646577 ACTAAAGTAGTGATCTGAACGCT 57.353 39.130 6.26 6.26 37.69 5.07
4867 5728 5.642686 ACTAAAGTAGTGATCTGAACGCTC 58.357 41.667 4.17 0.00 37.69 5.03
4868 5729 4.792521 AAAGTAGTGATCTGAACGCTCT 57.207 40.909 4.17 0.55 0.00 4.09
4869 5730 4.792521 AAGTAGTGATCTGAACGCTCTT 57.207 40.909 4.17 5.99 0.00 2.85
4870 5731 5.899120 AAGTAGTGATCTGAACGCTCTTA 57.101 39.130 4.17 0.00 0.00 2.10
4871 5732 6.458232 AAGTAGTGATCTGAACGCTCTTAT 57.542 37.500 4.17 0.00 0.00 1.73
4872 5733 7.569639 AAGTAGTGATCTGAACGCTCTTATA 57.430 36.000 4.17 0.00 0.00 0.98
4873 5734 7.753309 AGTAGTGATCTGAACGCTCTTATAT 57.247 36.000 4.17 0.00 0.00 0.86
4874 5735 8.172352 AGTAGTGATCTGAACGCTCTTATATT 57.828 34.615 4.17 0.00 0.00 1.28
4875 5736 9.286170 AGTAGTGATCTGAACGCTCTTATATTA 57.714 33.333 4.17 0.00 0.00 0.98
4876 5737 9.549509 GTAGTGATCTGAACGCTCTTATATTAG 57.450 37.037 4.17 0.00 0.00 1.73
4877 5738 8.172352 AGTGATCTGAACGCTCTTATATTAGT 57.828 34.615 0.00 0.00 0.00 2.24
4878 5739 8.634444 AGTGATCTGAACGCTCTTATATTAGTT 58.366 33.333 0.00 0.00 0.00 2.24
4879 5740 9.250624 GTGATCTGAACGCTCTTATATTAGTTT 57.749 33.333 0.00 0.00 0.00 2.66
4882 5743 8.778141 TCTGAACGCTCTTATATTAGTTTACG 57.222 34.615 0.00 0.00 0.00 3.18
4883 5744 7.859377 TCTGAACGCTCTTATATTAGTTTACGG 59.141 37.037 0.00 0.00 0.00 4.02
4884 5745 7.706159 TGAACGCTCTTATATTAGTTTACGGA 58.294 34.615 0.00 0.00 0.00 4.69
4885 5746 7.859377 TGAACGCTCTTATATTAGTTTACGGAG 59.141 37.037 0.00 0.00 0.00 4.63
4886 5747 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
4887 5748 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
4888 5749 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
4889 5750 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
4890 5751 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
4891 5752 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
5092 5953 7.171337 CCTTTTGCTATTGTTTAGTTGCATGTT 59.829 33.333 0.00 0.00 0.00 2.71
5370 6234 5.067023 GCACCTTCAGCTTGCTAATTCTTAT 59.933 40.000 0.00 0.00 33.26 1.73
5500 6692 6.808008 TTTCTCTCATGGACATGTTCTTTC 57.192 37.500 5.55 0.00 39.72 2.62
5559 6751 7.555554 AGGAGTTTTGTCAGATATTTGGATGAG 59.444 37.037 0.00 0.00 0.00 2.90
5862 7214 2.423892 TGCTATGGTCTCGTCTGACTTC 59.576 50.000 6.21 0.00 37.16 3.01
5908 7260 8.463930 TGATGGAAGTAAATTGTCAGTTTTCT 57.536 30.769 0.00 0.00 0.00 2.52
5932 7285 8.910944 TCTGACACTTTGTAGAACTATATACCC 58.089 37.037 0.00 0.00 0.00 3.69
5995 7359 7.286087 TCATTCTGCAATTTTATGGCTACAGAT 59.714 33.333 0.00 0.00 33.32 2.90
6008 7372 3.868077 GGCTACAGATGCTGAAGTTGTAG 59.132 47.826 0.82 5.77 42.42 2.74
6052 7416 6.992063 ACATTTCTTGTAGCTGACATTAGG 57.008 37.500 0.00 0.00 38.07 2.69
6140 7504 0.679321 CTCAGAGGCCCTTGGAAAGC 60.679 60.000 0.00 0.00 44.44 3.51
6148 7512 0.676782 CCCTTGGAAAGCTGTACGGG 60.677 60.000 3.34 0.00 44.44 5.28
6230 7594 2.597305 CACGAGAACTGCATAACGTACC 59.403 50.000 0.00 0.00 32.89 3.34
6245 7609 0.470341 GTACCTCCCTGCTTCCATCC 59.530 60.000 0.00 0.00 0.00 3.51
6247 7611 2.203126 CTCCCTGCTTCCATCCGC 60.203 66.667 0.00 0.00 0.00 5.54
6411 7777 0.907230 GAACTGACCTCTCCTGGCCT 60.907 60.000 3.32 0.00 0.00 5.19
6464 7838 4.076394 TGTTGACACCCCTTTTATACTGC 58.924 43.478 0.00 0.00 0.00 4.40
6467 7841 3.054655 TGACACCCCTTTTATACTGCCTC 60.055 47.826 0.00 0.00 0.00 4.70
6469 7843 4.368067 ACACCCCTTTTATACTGCCTCTA 58.632 43.478 0.00 0.00 0.00 2.43
6471 7845 4.409247 CACCCCTTTTATACTGCCTCTACT 59.591 45.833 0.00 0.00 0.00 2.57
6544 7918 7.959658 ATCACATCACCATTCCAAAATAGAA 57.040 32.000 0.00 0.00 0.00 2.10
6547 7921 6.015918 ACATCACCATTCCAAAATAGAACCA 58.984 36.000 0.00 0.00 0.00 3.67
6548 7922 6.153340 ACATCACCATTCCAAAATAGAACCAG 59.847 38.462 0.00 0.00 0.00 4.00
6551 7925 3.181487 CCATTCCAAAATAGAACCAGCGG 60.181 47.826 0.00 0.00 0.00 5.52
6553 7927 3.644966 TCCAAAATAGAACCAGCGGAT 57.355 42.857 1.50 0.00 0.00 4.18
6554 7928 3.278574 TCCAAAATAGAACCAGCGGATG 58.721 45.455 1.50 0.00 0.00 3.51
6566 7940 4.284860 CGGATGGATGGCGCGAGA 62.285 66.667 12.10 0.00 0.00 4.04
6567 7941 2.345244 GGATGGATGGCGCGAGAT 59.655 61.111 12.10 0.00 0.00 2.75
6568 7942 1.302033 GGATGGATGGCGCGAGATT 60.302 57.895 12.10 0.00 0.00 2.40
6569 7943 1.294659 GGATGGATGGCGCGAGATTC 61.295 60.000 12.10 0.00 0.00 2.52
6570 7944 0.320247 GATGGATGGCGCGAGATTCT 60.320 55.000 12.10 0.00 0.00 2.40
6571 7945 0.602106 ATGGATGGCGCGAGATTCTG 60.602 55.000 12.10 0.00 0.00 3.02
6572 7946 1.958205 GGATGGCGCGAGATTCTGG 60.958 63.158 12.10 0.00 0.00 3.86
6573 7947 1.068083 GATGGCGCGAGATTCTGGA 59.932 57.895 12.10 0.00 0.00 3.86
6574 7948 1.218230 GATGGCGCGAGATTCTGGAC 61.218 60.000 12.10 0.00 0.00 4.02
6765 8143 4.874966 GGGTCTGTCTCTCTGAATTTCATG 59.125 45.833 0.00 0.00 0.00 3.07
6852 8245 2.101917 TCCTCTCCGTGTTCGACTTTTT 59.898 45.455 0.00 0.00 39.71 1.94
6866 8259 7.380065 TGTTCGACTTTTTGCACCATATAAAAC 59.620 33.333 0.00 0.00 0.00 2.43
6867 8260 6.383415 TCGACTTTTTGCACCATATAAAACC 58.617 36.000 0.00 0.00 0.00 3.27
6904 8298 2.031258 TTCGCCCGAATGAATGCTAA 57.969 45.000 0.00 0.00 0.00 3.09
6911 8305 3.188048 CCCGAATGAATGCTAATCTGCTC 59.812 47.826 0.00 0.00 0.00 4.26
6918 8312 1.329913 TGCTAATCTGCTCCGCCTCA 61.330 55.000 0.00 0.00 0.00 3.86
6919 8313 0.179073 GCTAATCTGCTCCGCCTCAA 60.179 55.000 0.00 0.00 0.00 3.02
6922 8316 0.326264 AATCTGCTCCGCCTCAAACT 59.674 50.000 0.00 0.00 0.00 2.66
6939 8333 5.924356 TCAAACTCTCGGCCATGATTATTA 58.076 37.500 2.24 0.00 0.00 0.98
6973 9548 3.801698 CAGACCATCAGTACCAGATTGG 58.198 50.000 0.00 1.81 45.02 3.16
6974 9549 2.171448 AGACCATCAGTACCAGATTGGC 59.829 50.000 0.00 5.16 42.67 4.52
6991 9566 3.039202 GCGATGGAAACTGTGGGCG 62.039 63.158 0.00 0.00 0.00 6.13
7027 9602 2.000447 GTACACGAGGAGGCATGAAAC 59.000 52.381 0.00 0.00 0.00 2.78
7028 9603 0.321653 ACACGAGGAGGCATGAAACC 60.322 55.000 0.00 0.00 0.00 3.27
7029 9604 1.026718 CACGAGGAGGCATGAAACCC 61.027 60.000 0.00 0.00 0.00 4.11
7141 9716 5.178996 CCATCATTCATTCGAGACATTCCTC 59.821 44.000 0.00 0.00 0.00 3.71
7198 9773 4.865865 GCCAAGGGCTAGTAGCTG 57.134 61.111 21.20 11.87 46.69 4.24
7201 9776 0.105778 CCAAGGGCTAGTAGCTGCTC 59.894 60.000 21.20 0.00 41.99 4.26
7203 9778 1.068434 CAAGGGCTAGTAGCTGCTCTC 59.932 57.143 21.20 0.85 39.36 3.20
7216 9795 1.443363 GCTCTCGCTTTGCTTTGCC 60.443 57.895 0.00 0.00 0.00 4.52
7225 9804 1.406860 TTTGCTTTGCCCCCAAGGAC 61.407 55.000 0.00 0.00 38.24 3.85
7280 9860 1.753930 TCCACAAGCGTCTCGGTATA 58.246 50.000 0.00 0.00 36.27 1.47
7282 9862 1.269102 CCACAAGCGTCTCGGTATAGG 60.269 57.143 0.00 0.00 36.27 2.57
7310 10491 1.956170 GCGGTGCTCGGTCATATGG 60.956 63.158 2.13 0.00 39.69 2.74
7325 10506 0.824109 TATGGACCAAGACAGGAGCG 59.176 55.000 0.00 0.00 0.00 5.03
7328 10509 4.379243 ACCAAGACAGGAGCGGCG 62.379 66.667 0.51 0.51 0.00 6.46
7393 10574 7.115947 ACAAAAGCAAATCGTACTGAGTACTAC 59.884 37.037 19.42 0.00 36.93 2.73
7394 10575 4.906423 AGCAAATCGTACTGAGTACTACG 58.094 43.478 19.42 10.32 36.93 3.51
7395 10576 4.394300 AGCAAATCGTACTGAGTACTACGT 59.606 41.667 19.42 8.39 36.93 3.57
7397 10578 6.092670 AGCAAATCGTACTGAGTACTACGTAA 59.907 38.462 19.42 0.00 36.93 3.18
7398 10579 6.410337 GCAAATCGTACTGAGTACTACGTAAG 59.590 42.308 19.42 11.41 36.93 2.34
7472 11260 6.808321 ACATGGGTGATGTAACAGTATAGT 57.192 37.500 0.00 0.00 43.96 2.12
7473 11261 7.907841 ACATGGGTGATGTAACAGTATAGTA 57.092 36.000 0.00 0.00 43.96 1.82
7478 11266 9.816787 TGGGTGATGTAACAGTATAGTATATCA 57.183 33.333 0.00 0.00 0.00 2.15
7489 11277 9.462606 ACAGTATAGTATATCATGTCCAATCGA 57.537 33.333 0.00 0.00 0.00 3.59
7494 11282 9.952188 ATAGTATATCATGTCCAATCGATTACG 57.048 33.333 10.97 4.20 41.26 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.301401 GTGTGAGCTACGGGTGCAA 60.301 57.895 0.00 0.00 0.00 4.08
145 146 2.032528 CCTCTTCTGCCGCACCAA 59.967 61.111 0.00 0.00 0.00 3.67
172 173 1.689243 GGGGGAATTGGAGCCATTGC 61.689 60.000 0.00 0.00 37.95 3.56
196 199 0.309612 GAAAGGAAACGGCTTCGCAA 59.690 50.000 0.00 0.00 37.41 4.85
205 209 2.985139 GTCGGTGTAGAGAAAGGAAACG 59.015 50.000 0.00 0.00 0.00 3.60
206 210 3.324117 GGTCGGTGTAGAGAAAGGAAAC 58.676 50.000 0.00 0.00 0.00 2.78
232 236 0.672401 TCGAAGGACATTCCAACCGC 60.672 55.000 0.00 0.00 39.61 5.68
233 237 1.067142 TCTCGAAGGACATTCCAACCG 60.067 52.381 0.00 0.00 39.61 4.44
234 238 2.347731 GTCTCGAAGGACATTCCAACC 58.652 52.381 0.22 0.00 39.61 3.77
235 239 1.993370 CGTCTCGAAGGACATTCCAAC 59.007 52.381 5.74 0.00 39.61 3.77
236 240 1.671850 GCGTCTCGAAGGACATTCCAA 60.672 52.381 5.74 0.00 39.61 3.53
237 241 0.108804 GCGTCTCGAAGGACATTCCA 60.109 55.000 5.74 0.00 39.61 3.53
238 242 0.108804 TGCGTCTCGAAGGACATTCC 60.109 55.000 5.74 0.00 36.12 3.01
239 243 0.992802 GTGCGTCTCGAAGGACATTC 59.007 55.000 5.74 0.00 36.12 2.67
240 244 0.389948 GGTGCGTCTCGAAGGACATT 60.390 55.000 5.74 0.00 36.12 2.71
241 245 1.215647 GGTGCGTCTCGAAGGACAT 59.784 57.895 5.74 0.00 36.12 3.06
242 246 1.532604 ATGGTGCGTCTCGAAGGACA 61.533 55.000 5.74 0.00 36.12 4.02
243 247 1.078759 CATGGTGCGTCTCGAAGGAC 61.079 60.000 0.00 0.00 0.00 3.85
247 443 1.600511 TAGCCATGGTGCGTCTCGAA 61.601 55.000 14.67 0.00 36.02 3.71
249 445 1.589993 CTAGCCATGGTGCGTCTCG 60.590 63.158 14.67 0.00 36.02 4.04
258 454 0.737219 GTTGCTTGCTCTAGCCATGG 59.263 55.000 7.63 7.63 40.49 3.66
260 456 1.457346 GTGTTGCTTGCTCTAGCCAT 58.543 50.000 0.00 0.00 40.49 4.40
266 462 3.403038 ACTTAATCGTGTTGCTTGCTCT 58.597 40.909 0.00 0.00 0.00 4.09
295 491 3.217231 GGTCGACCCACATCGGAT 58.783 61.111 24.75 0.00 42.50 4.18
330 526 2.316867 CGTTGCATGTGCTCGGTCA 61.317 57.895 6.55 0.00 42.66 4.02
360 556 0.604578 CACTCTTGGGCCCATTTGTG 59.395 55.000 29.23 27.35 0.00 3.33
413 609 4.508662 AGCTTCTAAGGTCTCGGAAAATG 58.491 43.478 0.00 0.00 29.15 2.32
425 621 4.909696 TGAATCTCTCGAGCTTCTAAGG 57.090 45.455 7.81 0.00 35.31 2.69
433 629 7.881643 AACATATTGTATGAATCTCTCGAGC 57.118 36.000 7.81 0.00 0.00 5.03
477 673 6.088824 CAGAAAAATTCACTTCGAATCCCAG 58.911 40.000 0.00 0.00 43.83 4.45
522 718 9.112725 TGGAATCAATTCAATACATAGACACAG 57.887 33.333 5.19 0.00 38.53 3.66
554 750 1.208535 ACACCTGTTCGGAGTTTGTGA 59.791 47.619 0.00 0.00 32.13 3.58
897 1133 4.946160 AATTGTCAATGGAGGTAGGGAA 57.054 40.909 0.00 0.00 0.00 3.97
898 1134 4.325030 GGAAATTGTCAATGGAGGTAGGGA 60.325 45.833 0.00 0.00 0.00 4.20
1086 1324 4.332543 AGGGTGCGGGAGGAGGAA 62.333 66.667 0.00 0.00 0.00 3.36
1087 1325 4.779733 GAGGGTGCGGGAGGAGGA 62.780 72.222 0.00 0.00 0.00 3.71
1226 2045 0.529992 CCCTGAAATCGACGCCTACC 60.530 60.000 0.00 0.00 0.00 3.18
1230 2049 3.564027 CGCCCTGAAATCGACGCC 61.564 66.667 0.00 0.00 0.00 5.68
1237 2056 1.421646 CCTAGGAATCCGCCCTGAAAT 59.578 52.381 1.05 0.00 35.30 2.17
1238 2057 0.837272 CCTAGGAATCCGCCCTGAAA 59.163 55.000 1.05 0.00 35.30 2.69
1296 2115 7.655732 TCGACATAAATAATCATTCGACATGGT 59.344 33.333 0.00 0.00 0.00 3.55
1326 2145 1.814527 CGGACCACCTACTGGCTAC 59.185 63.158 0.00 0.00 45.32 3.58
1450 2270 7.490962 TTGATTGAATGTACCATCCGAATAC 57.509 36.000 0.00 0.00 0.00 1.89
1504 2324 3.244700 ACAGATGTGAGAGGGGTTTCAAG 60.245 47.826 0.00 0.00 0.00 3.02
1542 2362 1.134729 CCATTCCCCAGCGAAAAATGG 60.135 52.381 0.00 0.00 40.13 3.16
1556 2376 0.165944 CACGAAACGCTCACCATTCC 59.834 55.000 0.00 0.00 0.00 3.01
1585 2405 3.357079 GCACCAACCGACAGCCTG 61.357 66.667 0.00 0.00 0.00 4.85
1586 2406 4.643387 GGCACCAACCGACAGCCT 62.643 66.667 0.00 0.00 42.01 4.58
1617 2437 4.382685 GCTACCTCAATACAGTAACAGGCA 60.383 45.833 3.63 0.00 0.00 4.75
1671 2491 4.743348 GCCAACATGAAAATCCAAACCACT 60.743 41.667 0.00 0.00 0.00 4.00
1720 2540 3.938963 TCTAAATGCCCGAATTCACTCAC 59.061 43.478 6.22 0.00 0.00 3.51
1724 2544 3.442273 TGGTTCTAAATGCCCGAATTCAC 59.558 43.478 6.22 0.00 0.00 3.18
1731 2551 3.694072 TCAGATTTGGTTCTAAATGCCCG 59.306 43.478 0.00 0.00 30.78 6.13
1735 2555 6.596888 TCAGCTCTCAGATTTGGTTCTAAATG 59.403 38.462 0.00 0.00 30.78 2.32
1745 2565 3.606595 TCTGGTCAGCTCTCAGATTTG 57.393 47.619 6.19 0.00 33.21 2.32
1764 2584 6.980397 AGTTCACAGAAAACACCAATTTCATC 59.020 34.615 2.32 0.00 38.86 2.92
1788 2608 1.757574 CAATGTGCGTGTTGGTTCAG 58.242 50.000 0.00 0.00 0.00 3.02
1795 2615 1.300080 GCAAGGCAATGTGCGTGTT 60.300 52.632 0.00 0.00 46.21 3.32
1798 2618 0.888736 TACAGCAAGGCAATGTGCGT 60.889 50.000 0.00 0.00 46.21 5.24
1802 2622 3.828451 ACAGAATTACAGCAAGGCAATGT 59.172 39.130 0.00 0.00 0.00 2.71
1803 2623 4.445452 ACAGAATTACAGCAAGGCAATG 57.555 40.909 0.00 0.00 0.00 2.82
1811 2631 4.635765 GTGATAGGCAACAGAATTACAGCA 59.364 41.667 0.00 0.00 41.41 4.41
1814 2634 4.868171 GTCGTGATAGGCAACAGAATTACA 59.132 41.667 0.00 0.00 41.41 2.41
1855 2691 5.668471 CAGAAAGGCATATCTGAAGACTGA 58.332 41.667 8.07 0.00 44.64 3.41
1856 2692 4.272991 GCAGAAAGGCATATCTGAAGACTG 59.727 45.833 15.53 0.00 44.64 3.51
1889 2725 1.167851 CAACATGTACACCCAGCAGG 58.832 55.000 0.00 0.00 43.78 4.85
1915 2751 4.590647 TGTGCCTTTTCCCATGAACAATTA 59.409 37.500 0.00 0.00 0.00 1.40
1953 2791 6.317140 TGAGATTTTGTCATTACAGGCAGATC 59.683 38.462 0.00 0.00 36.83 2.75
2211 3054 5.282055 TGAGAAGAAAGAGACAGCTCAAA 57.718 39.130 0.00 0.00 43.81 2.69
2568 3418 1.882623 GCAGAACCTTTTGGACTCCAG 59.117 52.381 0.00 0.00 44.07 3.86
2728 3579 5.319043 TGGGAGACAAGTTTTCATAACCT 57.681 39.130 0.00 0.00 0.00 3.50
2886 3737 5.404096 GCTTAAAGCGGGCTTAATTGTAAA 58.596 37.500 6.31 0.00 34.84 2.01
2975 3826 5.570320 AGTGTGAGGCATTGTTTATAAGGT 58.430 37.500 0.00 0.00 0.00 3.50
3152 4004 7.378181 CACTGGGCATAACTAATTGAAAAACT 58.622 34.615 0.00 0.00 0.00 2.66
3207 4066 8.578308 TGAACAGAAGAAAACAATAATTGCAG 57.422 30.769 0.00 0.00 0.00 4.41
3208 4067 8.980610 CATGAACAGAAGAAAACAATAATTGCA 58.019 29.630 0.00 0.00 0.00 4.08
3209 4068 7.953710 GCATGAACAGAAGAAAACAATAATTGC 59.046 33.333 0.00 0.00 0.00 3.56
3210 4069 8.980610 TGCATGAACAGAAGAAAACAATAATTG 58.019 29.630 0.00 0.00 0.00 2.32
3211 4070 9.545105 TTGCATGAACAGAAGAAAACAATAATT 57.455 25.926 0.00 0.00 0.00 1.40
3212 4071 9.715121 ATTGCATGAACAGAAGAAAACAATAAT 57.285 25.926 0.00 0.00 0.00 1.28
3213 4072 9.545105 AATTGCATGAACAGAAGAAAACAATAA 57.455 25.926 0.00 0.00 0.00 1.40
3215 4074 9.715121 ATAATTGCATGAACAGAAGAAAACAAT 57.285 25.926 0.00 0.00 0.00 2.71
3216 4075 9.545105 AATAATTGCATGAACAGAAGAAAACAA 57.455 25.926 0.00 0.00 0.00 2.83
3217 4076 8.980610 CAATAATTGCATGAACAGAAGAAAACA 58.019 29.630 0.00 0.00 0.00 2.83
3218 4077 9.195411 TCAATAATTGCATGAACAGAAGAAAAC 57.805 29.630 0.00 0.00 0.00 2.43
3219 4078 9.761504 TTCAATAATTGCATGAACAGAAGAAAA 57.238 25.926 0.00 0.00 0.00 2.29
3220 4079 9.414295 CTTCAATAATTGCATGAACAGAAGAAA 57.586 29.630 0.00 0.00 32.67 2.52
3221 4080 8.579006 ACTTCAATAATTGCATGAACAGAAGAA 58.421 29.630 17.64 2.98 34.47 2.52
3222 4081 8.114331 ACTTCAATAATTGCATGAACAGAAGA 57.886 30.769 17.64 0.00 34.47 2.87
3223 4082 8.644619 CAACTTCAATAATTGCATGAACAGAAG 58.355 33.333 0.00 12.15 35.96 2.85
3224 4083 8.358895 TCAACTTCAATAATTGCATGAACAGAA 58.641 29.630 0.00 0.00 0.00 3.02
3225 4084 7.884257 TCAACTTCAATAATTGCATGAACAGA 58.116 30.769 0.00 0.00 0.00 3.41
3226 4085 8.592155 CATCAACTTCAATAATTGCATGAACAG 58.408 33.333 0.00 0.00 0.00 3.16
3227 4086 8.089597 ACATCAACTTCAATAATTGCATGAACA 58.910 29.630 0.00 0.00 0.00 3.18
3228 4087 8.377681 CACATCAACTTCAATAATTGCATGAAC 58.622 33.333 0.00 0.00 0.00 3.18
3229 4088 8.089597 ACACATCAACTTCAATAATTGCATGAA 58.910 29.630 0.00 0.14 0.00 2.57
3230 4089 7.604549 ACACATCAACTTCAATAATTGCATGA 58.395 30.769 0.00 0.00 0.00 3.07
3231 4090 7.542824 TGACACATCAACTTCAATAATTGCATG 59.457 33.333 0.00 0.00 0.00 4.06
3403 4262 8.844244 ACTGATGATTATGCTCAAATTACTTCC 58.156 33.333 0.00 0.00 0.00 3.46
3493 4352 7.989741 CCACATATGATCTTTTTCACTACTCCT 59.010 37.037 10.38 0.00 0.00 3.69
3517 4376 3.572642 TCTCATTATAGAGGGCGAACCA 58.427 45.455 0.00 0.00 43.89 3.67
3590 4450 4.142071 TGGCAGACAACAGCACAAATTAAA 60.142 37.500 0.00 0.00 0.00 1.52
3839 4699 8.545420 CAAGGTTTTCAGTTCAAAAATGATGAG 58.455 33.333 0.00 0.00 0.00 2.90
3840 4700 7.011295 GCAAGGTTTTCAGTTCAAAAATGATGA 59.989 33.333 0.00 0.00 0.00 2.92
3844 4704 5.353678 TGGCAAGGTTTTCAGTTCAAAAATG 59.646 36.000 0.00 0.00 0.00 2.32
3878 4738 4.789012 AAGCATTTGGAATGTGTACTGG 57.211 40.909 0.00 0.00 0.00 4.00
3996 4856 8.892723 CAAGGAACAGCATATAATGAACTAACA 58.107 33.333 0.00 0.00 0.00 2.41
4007 4867 4.235079 ACTTGCCAAGGAACAGCATATA 57.765 40.909 9.64 0.00 36.20 0.86
4070 4930 4.191544 GCATGTCATTAGTCTGTAAGGCA 58.808 43.478 0.00 0.00 44.82 4.75
4077 4937 5.735892 CGTTCAATTGCATGTCATTAGTCTG 59.264 40.000 0.00 0.00 0.00 3.51
4332 5193 6.469275 GCAACTTAACAAGAAAGAACACAGAC 59.531 38.462 0.00 0.00 0.00 3.51
4697 5558 7.756395 AACCAATCATAATCTCATTAGCCTG 57.244 36.000 0.00 0.00 0.00 4.85
4809 5670 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
4810 5671 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
4811 5672 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
4812 5673 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
4827 5688 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
4828 5689 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
4829 5690 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
4830 5691 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
4844 5705 5.416326 AGAGCGTTCAGATCACTACTTTAGT 59.584 40.000 1.01 0.00 37.82 2.24
4845 5706 5.885881 AGAGCGTTCAGATCACTACTTTAG 58.114 41.667 1.01 0.00 37.82 1.85
4846 5707 5.899120 AGAGCGTTCAGATCACTACTTTA 57.101 39.130 1.01 0.00 37.82 1.85
4847 5708 4.792521 AGAGCGTTCAGATCACTACTTT 57.207 40.909 1.01 0.00 37.82 2.66
4848 5709 4.792521 AAGAGCGTTCAGATCACTACTT 57.207 40.909 1.01 0.00 37.82 2.24
4849 5710 7.753309 ATATAAGAGCGTTCAGATCACTACT 57.247 36.000 1.01 0.00 37.82 2.57
4850 5711 9.549509 CTAATATAAGAGCGTTCAGATCACTAC 57.450 37.037 1.01 0.00 37.82 2.73
4851 5712 9.286170 ACTAATATAAGAGCGTTCAGATCACTA 57.714 33.333 1.01 0.00 37.82 2.74
4852 5713 8.172352 ACTAATATAAGAGCGTTCAGATCACT 57.828 34.615 1.01 0.00 37.82 3.41
4853 5714 8.804688 AACTAATATAAGAGCGTTCAGATCAC 57.195 34.615 1.01 0.00 37.82 3.06
4856 5717 9.395707 CGTAAACTAATATAAGAGCGTTCAGAT 57.604 33.333 1.01 0.00 0.00 2.90
4857 5718 7.859377 CCGTAAACTAATATAAGAGCGTTCAGA 59.141 37.037 1.01 0.00 0.00 3.27
4858 5719 7.859377 TCCGTAAACTAATATAAGAGCGTTCAG 59.141 37.037 1.01 0.00 0.00 3.02
4859 5720 7.706159 TCCGTAAACTAATATAAGAGCGTTCA 58.294 34.615 1.01 0.00 0.00 3.18
4860 5721 7.325579 CCTCCGTAAACTAATATAAGAGCGTTC 59.674 40.741 0.00 0.00 0.00 3.95
4861 5722 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
4862 5723 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
4863 5724 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
4864 5725 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4865 5726 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4871 5732 9.512588 CTTAGATACTCCCTCCGTAAACTAATA 57.487 37.037 0.00 0.00 0.00 0.98
4872 5733 8.003629 ACTTAGATACTCCCTCCGTAAACTAAT 58.996 37.037 0.00 0.00 0.00 1.73
4873 5734 7.349598 ACTTAGATACTCCCTCCGTAAACTAA 58.650 38.462 0.00 0.00 0.00 2.24
4874 5735 6.904626 ACTTAGATACTCCCTCCGTAAACTA 58.095 40.000 0.00 0.00 0.00 2.24
4875 5736 5.764432 ACTTAGATACTCCCTCCGTAAACT 58.236 41.667 0.00 0.00 0.00 2.66
4876 5737 6.293900 GCTACTTAGATACTCCCTCCGTAAAC 60.294 46.154 0.00 0.00 0.00 2.01
4877 5738 5.767168 GCTACTTAGATACTCCCTCCGTAAA 59.233 44.000 0.00 0.00 0.00 2.01
4878 5739 5.072872 AGCTACTTAGATACTCCCTCCGTAA 59.927 44.000 0.00 0.00 0.00 3.18
4879 5740 4.596643 AGCTACTTAGATACTCCCTCCGTA 59.403 45.833 0.00 0.00 0.00 4.02
4880 5741 3.395273 AGCTACTTAGATACTCCCTCCGT 59.605 47.826 0.00 0.00 0.00 4.69
4881 5742 3.754323 CAGCTACTTAGATACTCCCTCCG 59.246 52.174 0.00 0.00 0.00 4.63
4882 5743 3.508402 GCAGCTACTTAGATACTCCCTCC 59.492 52.174 0.00 0.00 0.00 4.30
4883 5744 4.145807 TGCAGCTACTTAGATACTCCCTC 58.854 47.826 0.00 0.00 0.00 4.30
4884 5745 4.141135 TCTGCAGCTACTTAGATACTCCCT 60.141 45.833 9.47 0.00 0.00 4.20
4885 5746 4.145807 TCTGCAGCTACTTAGATACTCCC 58.854 47.826 9.47 0.00 0.00 4.30
4886 5747 5.975693 ATCTGCAGCTACTTAGATACTCC 57.024 43.478 9.47 0.00 0.00 3.85
4887 5748 6.015856 TGGAATCTGCAGCTACTTAGATACTC 60.016 42.308 9.47 0.00 30.19 2.59
4888 5749 5.835819 TGGAATCTGCAGCTACTTAGATACT 59.164 40.000 9.47 0.00 30.19 2.12
4889 5750 6.090483 TGGAATCTGCAGCTACTTAGATAC 57.910 41.667 9.47 0.00 30.19 2.24
4890 5751 6.695429 CATGGAATCTGCAGCTACTTAGATA 58.305 40.000 9.47 0.00 30.19 1.98
4891 5752 5.549347 CATGGAATCTGCAGCTACTTAGAT 58.451 41.667 9.47 0.00 0.00 1.98
5092 5953 8.578448 TCAATTAATGAAATGTGGAGATCACA 57.422 30.769 1.18 1.18 46.91 3.58
5257 6118 5.869753 TGAAGAGAAAGTGCAGCTAATTC 57.130 39.130 0.00 0.00 0.00 2.17
5370 6234 1.180029 GCCTAGGTACAACGAGACCA 58.820 55.000 11.31 0.00 38.27 4.02
5415 6279 9.143155 ACCCTGAACTTTAATTAGTGTCATTTT 57.857 29.630 0.00 0.00 0.00 1.82
5559 6751 6.231211 TGAAGTTGATGGAGTAACTTTCCTC 58.769 40.000 0.00 0.00 44.59 3.71
5755 6947 5.049474 TCTCACACTCATGCACACATAAAAC 60.049 40.000 0.00 0.00 33.67 2.43
5862 7214 7.381408 CCATCATTAAAAATCAGCAGCATACAG 59.619 37.037 0.00 0.00 0.00 2.74
5908 7260 8.692710 CAGGGTATATAGTTCTACAAAGTGTCA 58.307 37.037 0.00 0.00 0.00 3.58
5911 7263 8.915036 ACTCAGGGTATATAGTTCTACAAAGTG 58.085 37.037 0.00 0.00 0.00 3.16
5912 7264 9.490083 AACTCAGGGTATATAGTTCTACAAAGT 57.510 33.333 0.00 0.00 0.00 2.66
5932 7285 2.988010 TATAGCAGGCACCAACTCAG 57.012 50.000 0.00 0.00 0.00 3.35
5995 7359 1.961394 ACGGTCTCTACAACTTCAGCA 59.039 47.619 0.00 0.00 0.00 4.41
6008 7372 2.814280 TCTTTCTTCCACACGGTCTC 57.186 50.000 0.00 0.00 0.00 3.36
6047 7411 6.605119 ACAAAGATGTTAGCATAGCCCTAAT 58.395 36.000 0.00 0.00 35.91 1.73
6109 7473 2.008329 GCCTCTGAGAGCTGAAACATG 58.992 52.381 6.17 0.00 0.00 3.21
6140 7504 1.883084 GCCTCGATTGCCCGTACAG 60.883 63.158 0.00 0.00 0.00 2.74
6148 7512 2.464459 CGACCCTTGCCTCGATTGC 61.464 63.158 0.38 0.38 31.24 3.56
6230 7594 2.203126 GCGGATGGAAGCAGGGAG 60.203 66.667 0.00 0.00 0.00 4.30
6245 7609 0.318614 ACGGCAAAATGGTGAAAGCG 60.319 50.000 0.00 0.00 36.92 4.68
6247 7611 3.369546 AGAACGGCAAAATGGTGAAAG 57.630 42.857 0.00 0.00 0.00 2.62
6426 7792 5.700832 GTGTCAACACATCCTTCAGACATTA 59.299 40.000 8.37 0.00 45.75 1.90
6427 7793 4.516698 GTGTCAACACATCCTTCAGACATT 59.483 41.667 8.37 0.00 45.75 2.71
6428 7794 4.067896 GTGTCAACACATCCTTCAGACAT 58.932 43.478 8.37 0.00 45.75 3.06
6464 7838 2.623889 CCCTACATCCACGAAGTAGAGG 59.376 54.545 5.79 2.80 41.61 3.69
6467 7841 2.032620 AGCCCTACATCCACGAAGTAG 58.967 52.381 0.00 0.00 41.61 2.57
6471 7845 0.616395 TCCAGCCCTACATCCACGAA 60.616 55.000 0.00 0.00 0.00 3.85
6544 7918 4.552365 CGCCATCCATCCGCTGGT 62.552 66.667 2.61 0.00 46.08 4.00
6551 7925 0.320247 AGAATCTCGCGCCATCCATC 60.320 55.000 0.00 0.00 0.00 3.51
6553 7927 1.227350 CAGAATCTCGCGCCATCCA 60.227 57.895 0.00 0.00 0.00 3.41
6554 7928 1.958205 CCAGAATCTCGCGCCATCC 60.958 63.158 0.00 0.00 0.00 3.51
6555 7929 1.068083 TCCAGAATCTCGCGCCATC 59.932 57.895 0.00 0.00 0.00 3.51
6556 7930 1.227380 GTCCAGAATCTCGCGCCAT 60.227 57.895 0.00 0.00 0.00 4.40
6557 7931 2.184322 GTCCAGAATCTCGCGCCA 59.816 61.111 0.00 0.00 0.00 5.69
6558 7932 2.956964 CGTCCAGAATCTCGCGCC 60.957 66.667 0.00 0.00 0.00 6.53
6559 7933 2.956964 CCGTCCAGAATCTCGCGC 60.957 66.667 0.00 0.00 0.00 6.86
6560 7934 2.956964 GCCGTCCAGAATCTCGCG 60.957 66.667 0.00 0.00 0.00 5.87
6561 7935 2.956964 CGCCGTCCAGAATCTCGC 60.957 66.667 0.00 0.00 0.00 5.03
6562 7936 2.278857 CCGCCGTCCAGAATCTCG 60.279 66.667 0.00 0.00 0.00 4.04
6563 7937 2.107141 CCCGCCGTCCAGAATCTC 59.893 66.667 0.00 0.00 0.00 2.75
6564 7938 4.162690 GCCCGCCGTCCAGAATCT 62.163 66.667 0.00 0.00 0.00 2.40
6618 7992 0.179000 AAGCAATCTACCTCGCCCTG 59.821 55.000 0.00 0.00 0.00 4.45
6619 7993 1.789523 TAAGCAATCTACCTCGCCCT 58.210 50.000 0.00 0.00 0.00 5.19
6620 7994 2.841442 ATAAGCAATCTACCTCGCCC 57.159 50.000 0.00 0.00 0.00 6.13
6621 7995 5.500645 AAAAATAAGCAATCTACCTCGCC 57.499 39.130 0.00 0.00 0.00 5.54
6742 8120 4.543590 TGAAATTCAGAGAGACAGACCC 57.456 45.455 0.00 0.00 0.00 4.46
6743 8121 5.728471 TCATGAAATTCAGAGAGACAGACC 58.272 41.667 1.10 0.00 0.00 3.85
6747 8125 8.096414 TGTTACATCATGAAATTCAGAGAGACA 58.904 33.333 0.00 4.36 0.00 3.41
6748 8126 8.386606 GTGTTACATCATGAAATTCAGAGAGAC 58.613 37.037 0.00 2.24 0.00 3.36
6821 8210 2.669240 GGAGAGGAACGGGGGTTG 59.331 66.667 0.00 0.00 0.00 3.77
6822 8211 3.001406 CGGAGAGGAACGGGGGTT 61.001 66.667 0.00 0.00 0.00 4.11
6823 8212 4.312152 ACGGAGAGGAACGGGGGT 62.312 66.667 0.00 0.00 0.00 4.95
6824 8213 3.771160 CACGGAGAGGAACGGGGG 61.771 72.222 0.00 0.00 0.00 5.40
6825 8214 2.502692 GAACACGGAGAGGAACGGGG 62.503 65.000 0.00 0.00 37.93 5.73
6826 8215 1.080025 GAACACGGAGAGGAACGGG 60.080 63.158 0.00 0.00 39.87 5.28
6829 8218 0.597072 AGTCGAACACGGAGAGGAAC 59.403 55.000 0.00 0.00 0.00 3.62
6867 8260 0.834261 AATTCCAAACCAACCGGGGG 60.834 55.000 6.32 10.02 42.91 5.40
6874 8267 0.537600 TCGGGCGAATTCCAAACCAA 60.538 50.000 0.00 0.00 0.00 3.67
6911 8305 2.815647 GCCGAGAGTTTGAGGCGG 60.816 66.667 0.00 0.00 44.47 6.13
6918 8312 6.357367 ACTTAATAATCATGGCCGAGAGTTT 58.643 36.000 0.00 0.00 0.00 2.66
6919 8313 5.930135 ACTTAATAATCATGGCCGAGAGTT 58.070 37.500 0.00 0.00 0.00 3.01
6922 8316 5.063204 CCAACTTAATAATCATGGCCGAGA 58.937 41.667 0.00 0.00 0.00 4.04
6939 8333 1.352622 TGGTCTGCAGGTCCCAACTT 61.353 55.000 15.13 0.00 0.00 2.66
6973 9548 2.877691 GCCCACAGTTTCCATCGC 59.122 61.111 0.00 0.00 0.00 4.58
6974 9549 0.744414 ATCGCCCACAGTTTCCATCG 60.744 55.000 0.00 0.00 0.00 3.84
7012 9587 1.815421 CGGGTTTCATGCCTCCTCG 60.815 63.158 0.00 0.00 0.00 4.63
7074 9649 4.996434 GAGCATGGGGATCGGCGG 62.996 72.222 7.21 0.00 0.00 6.13
7201 9776 2.259511 GGGGCAAAGCAAAGCGAG 59.740 61.111 0.00 0.00 0.00 5.03
7203 9778 3.162505 TTGGGGGCAAAGCAAAGCG 62.163 57.895 0.00 0.00 0.00 4.68
7216 9795 4.335647 AGCACTGCGTCCTTGGGG 62.336 66.667 0.00 0.00 0.00 4.96
7238 9817 0.530288 TGCATGTACTCTGTGCGCTA 59.470 50.000 9.73 0.00 41.61 4.26
7240 9819 0.516877 TTTGCATGTACTCTGTGCGC 59.483 50.000 0.00 0.00 41.61 6.09
7242 9821 3.191162 TGGATTTTGCATGTACTCTGTGC 59.809 43.478 0.00 0.49 39.26 4.57
7246 9825 4.082571 GCTTGTGGATTTTGCATGTACTCT 60.083 41.667 0.00 0.00 0.00 3.24
7247 9826 4.168760 GCTTGTGGATTTTGCATGTACTC 58.831 43.478 0.00 0.00 0.00 2.59
7294 9874 3.290776 GTCCATATGACCGAGCACC 57.709 57.895 3.65 0.00 38.09 5.01
7306 10487 0.824109 CGCTCCTGTCTTGGTCCATA 59.176 55.000 0.00 0.00 0.00 2.74
7310 10491 2.435059 GCCGCTCCTGTCTTGGTC 60.435 66.667 0.00 0.00 0.00 4.02
7325 10506 1.812571 ACATGAACCAATCAGAACGCC 59.187 47.619 0.00 0.00 42.53 5.68
7328 10509 6.642540 GGAAAGAAACATGAACCAATCAGAAC 59.357 38.462 0.00 0.00 42.53 3.01
7397 10578 7.038516 AGCCCAAGTAGTAGTGTGTTAAATACT 60.039 37.037 0.00 0.00 33.27 2.12
7398 10579 7.101700 AGCCCAAGTAGTAGTGTGTTAAATAC 58.898 38.462 0.00 0.00 0.00 1.89
7471 11259 7.968956 ACTCGTAATCGATTGGACATGATATAC 59.031 37.037 20.87 5.18 45.21 1.47
7472 11260 8.051901 ACTCGTAATCGATTGGACATGATATA 57.948 34.615 20.87 0.00 45.21 0.86
7473 11261 6.925211 ACTCGTAATCGATTGGACATGATAT 58.075 36.000 20.87 0.89 45.21 1.63
7476 11264 4.649088 ACTCGTAATCGATTGGACATGA 57.351 40.909 20.87 10.18 45.21 3.07
7477 11265 5.758924 TCTACTCGTAATCGATTGGACATG 58.241 41.667 20.87 6.23 45.21 3.21
7478 11266 6.576662 ATCTACTCGTAATCGATTGGACAT 57.423 37.500 20.87 8.93 45.21 3.06
7479 11267 6.387041 AATCTACTCGTAATCGATTGGACA 57.613 37.500 20.87 0.00 45.21 4.02
7480 11268 7.804712 TCTAATCTACTCGTAATCGATTGGAC 58.195 38.462 20.87 10.68 45.21 4.02
7484 11272 7.148052 CCCCATCTAATCTACTCGTAATCGATT 60.148 40.741 16.15 16.15 45.21 3.34
7485 11273 6.319152 CCCCATCTAATCTACTCGTAATCGAT 59.681 42.308 0.00 0.00 45.21 3.59
7487 11275 5.676584 GCCCCATCTAATCTACTCGTAATCG 60.677 48.000 0.00 0.00 38.55 3.34
7488 11276 5.419471 AGCCCCATCTAATCTACTCGTAATC 59.581 44.000 0.00 0.00 0.00 1.75
7489 11277 5.186021 CAGCCCCATCTAATCTACTCGTAAT 59.814 44.000 0.00 0.00 0.00 1.89
7490 11278 4.523173 CAGCCCCATCTAATCTACTCGTAA 59.477 45.833 0.00 0.00 0.00 3.18
7492 11280 2.894126 CAGCCCCATCTAATCTACTCGT 59.106 50.000 0.00 0.00 0.00 4.18
7493 11281 2.353208 GCAGCCCCATCTAATCTACTCG 60.353 54.545 0.00 0.00 0.00 4.18
7494 11282 2.027653 GGCAGCCCCATCTAATCTACTC 60.028 54.545 0.00 0.00 0.00 2.59
7495 11283 1.981495 GGCAGCCCCATCTAATCTACT 59.019 52.381 0.00 0.00 0.00 2.57
7496 11284 1.338200 CGGCAGCCCCATCTAATCTAC 60.338 57.143 5.63 0.00 0.00 2.59
7498 11286 0.764369 TCGGCAGCCCCATCTAATCT 60.764 55.000 5.63 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.