Multiple sequence alignment - TraesCS6D01G377700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G377700 chr6D 100.000 3563 0 0 1 3563 460465174 460468736 0.000000e+00 6580
1 TraesCS6D01G377700 chr6B 89.990 1948 117 41 671 2565 701381449 701383371 0.000000e+00 2446
2 TraesCS6D01G377700 chr6B 84.520 885 66 31 2616 3489 701386099 701386923 0.000000e+00 809
3 TraesCS6D01G377700 chr6B 86.184 608 61 6 2594 3196 701384265 701384854 1.400000e-178 636
4 TraesCS6D01G377700 chr6B 85.505 614 64 10 2594 3196 701385477 701386076 5.050000e-173 617
5 TraesCS6D01G377700 chr6B 85.179 614 66 10 2594 3196 701384866 701385465 1.090000e-169 606
6 TraesCS6D01G377700 chr6B 85.179 614 59 13 2594 3196 701383661 701384253 5.090000e-168 601
7 TraesCS6D01G377700 chr6B 95.385 65 2 1 205 268 701381180 701381244 6.290000e-18 102
8 TraesCS6D01G377700 chrUn 87.427 1893 116 64 1714 3563 74654530 74652717 0.000000e+00 2065
9 TraesCS6D01G377700 chrUn 87.427 1893 116 64 1714 3563 229387739 229389552 0.000000e+00 2065
10 TraesCS6D01G377700 chrUn 87.911 1034 67 25 641 1628 74655693 74654672 0.000000e+00 1164
11 TraesCS6D01G377700 chrUn 87.911 1034 67 25 641 1628 229386576 229387597 0.000000e+00 1164
12 TraesCS6D01G377700 chrUn 88.364 275 21 10 8 274 74656103 74655832 1.600000e-83 320
13 TraesCS6D01G377700 chrUn 88.364 275 21 10 8 274 229386166 229386437 1.600000e-83 320


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G377700 chr6D 460465174 460468736 3562 False 6580 6580 100.000000 1 3563 1 chr6D.!!$F1 3562
1 TraesCS6D01G377700 chr6B 701381180 701386923 5743 False 831 2446 87.420286 205 3489 7 chr6B.!!$F1 3284
2 TraesCS6D01G377700 chrUn 74652717 74656103 3386 True 1183 2065 87.900667 8 3563 3 chrUn.!!$R1 3555
3 TraesCS6D01G377700 chrUn 229386166 229389552 3386 False 1183 2065 87.900667 8 3563 3 chrUn.!!$F1 3555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 890 0.034059 CTCCAGAGTCCACACACCAC 59.966 60.0 0.00 0.0 0.0 4.16 F
831 930 0.102300 TACGGCGATGGTGAGACATG 59.898 55.0 16.62 0.0 0.0 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1635 1765 0.525311 TGCATGCACCATTTACGTGG 59.475 50.0 18.46 0.0 45.04 4.94 R
2738 4453 0.824109 TATGGACCAAGACAGGAGCG 59.176 55.0 0.00 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.780008 ACTTTTATTTTGGTAAAGTTGGCAC 57.220 32.000 0.00 0.00 38.56 5.01
44 47 5.163754 GGCACTGTACTTGTGGTATGATTTC 60.164 44.000 16.95 2.50 36.08 2.17
47 50 7.333423 GCACTGTACTTGTGGTATGATTTCTTA 59.667 37.037 16.95 0.00 36.08 2.10
48 51 9.383519 CACTGTACTTGTGGTATGATTTCTTAT 57.616 33.333 10.39 0.00 32.56 1.73
49 52 9.383519 ACTGTACTTGTGGTATGATTTCTTATG 57.616 33.333 0.00 0.00 32.56 1.90
50 53 9.599866 CTGTACTTGTGGTATGATTTCTTATGA 57.400 33.333 0.00 0.00 32.56 2.15
54 57 7.497249 ACTTGTGGTATGATTTCTTATGAGCTC 59.503 37.037 6.82 6.82 0.00 4.09
57 60 6.989169 GTGGTATGATTTCTTATGAGCTCTGT 59.011 38.462 16.19 6.35 0.00 3.41
67 70 5.361285 TCTTATGAGCTCTGTCTACCCTTTC 59.639 44.000 16.19 0.00 0.00 2.62
76 79 4.021016 TCTGTCTACCCTTTCTCTTGAAGC 60.021 45.833 0.00 0.00 33.28 3.86
92 96 2.771372 TGAAGCCTTTTTGCCTTTCCTT 59.229 40.909 0.00 0.00 0.00 3.36
145 150 3.123050 ACAAATTCAACCTTTTGAGCGC 58.877 40.909 0.00 0.00 42.79 5.92
147 152 2.997485 ATTCAACCTTTTGAGCGCTC 57.003 45.000 30.42 30.42 42.79 5.03
151 156 0.465460 AACCTTTTGAGCGCTCCACA 60.465 50.000 33.23 15.89 0.00 4.17
157 162 1.089112 TTGAGCGCTCCACATGAATG 58.911 50.000 33.23 0.00 0.00 2.67
292 303 5.904984 ATAGGTATACCATGCCAGAAACA 57.095 39.130 23.87 0.00 37.52 2.83
293 304 4.156455 AGGTATACCATGCCAGAAACAG 57.844 45.455 23.87 0.00 37.52 3.16
294 305 3.523564 AGGTATACCATGCCAGAAACAGT 59.476 43.478 23.87 0.00 37.52 3.55
295 306 3.627577 GGTATACCATGCCAGAAACAGTG 59.372 47.826 17.44 0.00 34.86 3.66
296 307 3.719268 ATACCATGCCAGAAACAGTGA 57.281 42.857 0.00 0.00 0.00 3.41
297 308 2.592102 ACCATGCCAGAAACAGTGAT 57.408 45.000 0.00 0.00 0.00 3.06
298 309 2.880443 ACCATGCCAGAAACAGTGATT 58.120 42.857 0.00 0.00 0.00 2.57
299 310 4.032960 ACCATGCCAGAAACAGTGATTA 57.967 40.909 0.00 0.00 0.00 1.75
300 311 4.603131 ACCATGCCAGAAACAGTGATTAT 58.397 39.130 0.00 0.00 0.00 1.28
301 312 5.018809 ACCATGCCAGAAACAGTGATTATT 58.981 37.500 0.00 0.00 0.00 1.40
302 313 6.186957 ACCATGCCAGAAACAGTGATTATTA 58.813 36.000 0.00 0.00 0.00 0.98
303 314 6.319658 ACCATGCCAGAAACAGTGATTATTAG 59.680 38.462 0.00 0.00 0.00 1.73
304 315 6.319658 CCATGCCAGAAACAGTGATTATTAGT 59.680 38.462 0.00 0.00 0.00 2.24
305 316 7.148018 CCATGCCAGAAACAGTGATTATTAGTT 60.148 37.037 0.00 0.00 0.00 2.24
306 317 8.892723 CATGCCAGAAACAGTGATTATTAGTTA 58.107 33.333 0.00 0.00 0.00 2.24
307 318 8.263940 TGCCAGAAACAGTGATTATTAGTTAC 57.736 34.615 0.00 0.00 0.00 2.50
308 319 7.880713 TGCCAGAAACAGTGATTATTAGTTACA 59.119 33.333 0.00 0.00 0.00 2.41
309 320 8.726988 GCCAGAAACAGTGATTATTAGTTACAA 58.273 33.333 0.00 0.00 0.00 2.41
376 387 8.677148 ATAACTTCTTTCTACACTTTTGCAGA 57.323 30.769 0.00 0.00 0.00 4.26
377 388 7.391148 AACTTCTTTCTACACTTTTGCAGAA 57.609 32.000 0.00 0.00 0.00 3.02
378 389 6.786207 ACTTCTTTCTACACTTTTGCAGAAC 58.214 36.000 0.00 0.00 0.00 3.01
379 390 6.599638 ACTTCTTTCTACACTTTTGCAGAACT 59.400 34.615 0.00 0.00 0.00 3.01
380 391 7.121315 ACTTCTTTCTACACTTTTGCAGAACTT 59.879 33.333 0.00 0.00 0.00 2.66
381 392 7.016361 TCTTTCTACACTTTTGCAGAACTTC 57.984 36.000 0.00 0.00 0.00 3.01
382 393 6.597672 TCTTTCTACACTTTTGCAGAACTTCA 59.402 34.615 0.00 0.00 0.00 3.02
383 394 6.751514 TTCTACACTTTTGCAGAACTTCAA 57.248 33.333 0.00 0.00 0.00 2.69
384 395 6.363577 TCTACACTTTTGCAGAACTTCAAG 57.636 37.500 0.00 0.00 0.00 3.02
385 396 6.112734 TCTACACTTTTGCAGAACTTCAAGA 58.887 36.000 0.00 0.00 0.00 3.02
386 397 5.841957 ACACTTTTGCAGAACTTCAAGAT 57.158 34.783 0.00 0.00 0.00 2.40
387 398 6.942532 ACACTTTTGCAGAACTTCAAGATA 57.057 33.333 0.00 0.00 0.00 1.98
388 399 6.729187 ACACTTTTGCAGAACTTCAAGATAC 58.271 36.000 0.00 0.00 0.00 2.24
389 400 6.145535 CACTTTTGCAGAACTTCAAGATACC 58.854 40.000 0.00 0.00 0.00 2.73
390 401 5.241728 ACTTTTGCAGAACTTCAAGATACCC 59.758 40.000 0.00 0.00 0.00 3.69
391 402 2.972625 TGCAGAACTTCAAGATACCCG 58.027 47.619 0.00 0.00 0.00 5.28
392 403 2.565391 TGCAGAACTTCAAGATACCCGA 59.435 45.455 0.00 0.00 0.00 5.14
393 404 2.930682 GCAGAACTTCAAGATACCCGAC 59.069 50.000 0.00 0.00 0.00 4.79
394 405 3.522553 CAGAACTTCAAGATACCCGACC 58.477 50.000 0.00 0.00 0.00 4.79
395 406 3.195825 CAGAACTTCAAGATACCCGACCT 59.804 47.826 0.00 0.00 0.00 3.85
396 407 3.447944 AGAACTTCAAGATACCCGACCTC 59.552 47.826 0.00 0.00 0.00 3.85
397 408 3.103080 ACTTCAAGATACCCGACCTCT 57.897 47.619 0.00 0.00 0.00 3.69
398 409 2.761208 ACTTCAAGATACCCGACCTCTG 59.239 50.000 0.00 0.00 0.00 3.35
399 410 1.112113 TCAAGATACCCGACCTCTGC 58.888 55.000 0.00 0.00 0.00 4.26
400 411 0.824109 CAAGATACCCGACCTCTGCA 59.176 55.000 0.00 0.00 0.00 4.41
401 412 1.414181 CAAGATACCCGACCTCTGCAT 59.586 52.381 0.00 0.00 0.00 3.96
402 413 1.333177 AGATACCCGACCTCTGCATC 58.667 55.000 0.00 0.00 0.00 3.91
403 414 0.318762 GATACCCGACCTCTGCATCC 59.681 60.000 0.00 0.00 0.00 3.51
404 415 0.398522 ATACCCGACCTCTGCATCCA 60.399 55.000 0.00 0.00 0.00 3.41
405 416 0.616395 TACCCGACCTCTGCATCCAA 60.616 55.000 0.00 0.00 0.00 3.53
406 417 1.274703 ACCCGACCTCTGCATCCAAT 61.275 55.000 0.00 0.00 0.00 3.16
407 418 0.107017 CCCGACCTCTGCATCCAATT 60.107 55.000 0.00 0.00 0.00 2.32
408 419 1.019673 CCGACCTCTGCATCCAATTG 58.980 55.000 0.00 0.00 0.00 2.32
409 420 1.407299 CCGACCTCTGCATCCAATTGA 60.407 52.381 7.12 0.00 0.00 2.57
410 421 2.569059 CGACCTCTGCATCCAATTGAT 58.431 47.619 7.12 0.00 0.00 2.57
418 429 2.502213 CATCCAATTGATGCACGCAT 57.498 45.000 7.12 3.71 44.16 4.73
419 430 2.816689 CATCCAATTGATGCACGCATT 58.183 42.857 7.12 0.00 44.16 3.56
420 431 2.565210 TCCAATTGATGCACGCATTC 57.435 45.000 7.12 0.77 36.70 2.67
421 432 1.817447 TCCAATTGATGCACGCATTCA 59.183 42.857 7.12 3.34 36.70 2.57
422 433 2.427812 TCCAATTGATGCACGCATTCAT 59.572 40.909 7.12 0.00 36.70 2.57
423 434 3.631227 TCCAATTGATGCACGCATTCATA 59.369 39.130 7.12 0.00 36.70 2.15
424 435 4.278919 TCCAATTGATGCACGCATTCATAT 59.721 37.500 7.12 0.00 36.70 1.78
425 436 5.472820 TCCAATTGATGCACGCATTCATATA 59.527 36.000 7.12 0.00 36.70 0.86
426 437 6.151480 TCCAATTGATGCACGCATTCATATAT 59.849 34.615 7.12 0.00 36.70 0.86
427 438 6.471198 CCAATTGATGCACGCATTCATATATC 59.529 38.462 7.12 0.00 36.70 1.63
428 439 4.845621 TGATGCACGCATTCATATATCG 57.154 40.909 5.89 0.00 36.70 2.92
429 440 4.493547 TGATGCACGCATTCATATATCGA 58.506 39.130 5.89 0.00 36.70 3.59
430 441 4.327087 TGATGCACGCATTCATATATCGAC 59.673 41.667 5.89 0.00 36.70 4.20
431 442 2.993220 TGCACGCATTCATATATCGACC 59.007 45.455 0.00 0.00 0.00 4.79
432 443 2.993220 GCACGCATTCATATATCGACCA 59.007 45.455 0.00 0.00 0.00 4.02
433 444 3.431912 GCACGCATTCATATATCGACCAA 59.568 43.478 0.00 0.00 0.00 3.67
434 445 4.093408 GCACGCATTCATATATCGACCAAT 59.907 41.667 0.00 0.00 0.00 3.16
435 446 5.390885 GCACGCATTCATATATCGACCAATT 60.391 40.000 0.00 0.00 0.00 2.32
436 447 6.602179 CACGCATTCATATATCGACCAATTT 58.398 36.000 0.00 0.00 0.00 1.82
437 448 6.520790 CACGCATTCATATATCGACCAATTTG 59.479 38.462 0.00 0.00 0.00 2.32
438 449 6.023435 CGCATTCATATATCGACCAATTTGG 58.977 40.000 14.02 14.02 45.02 3.28
439 450 5.801947 GCATTCATATATCGACCAATTTGGC 59.198 40.000 15.49 7.46 42.67 4.52
440 451 5.957842 TTCATATATCGACCAATTTGGCC 57.042 39.130 15.49 3.24 42.67 5.36
441 452 4.000325 TCATATATCGACCAATTTGGCCG 59.000 43.478 16.94 16.94 45.07 6.13
442 453 0.951558 ATATCGACCAATTTGGCCGC 59.048 50.000 18.06 6.40 43.33 6.53
443 454 0.393132 TATCGACCAATTTGGCCGCA 60.393 50.000 18.06 8.60 43.33 5.69
444 455 1.656818 ATCGACCAATTTGGCCGCAG 61.657 55.000 18.06 4.89 43.33 5.18
445 456 2.331893 CGACCAATTTGGCCGCAGA 61.332 57.895 15.49 0.00 42.67 4.26
446 457 1.656818 CGACCAATTTGGCCGCAGAT 61.657 55.000 15.49 0.00 42.67 2.90
447 458 0.179129 GACCAATTTGGCCGCAGATG 60.179 55.000 15.49 0.00 42.67 2.90
448 459 1.519898 CCAATTTGGCCGCAGATGC 60.520 57.895 1.71 0.00 37.78 3.91
449 460 1.215912 CAATTTGGCCGCAGATGCA 59.784 52.632 5.55 0.00 42.21 3.96
450 461 0.390078 CAATTTGGCCGCAGATGCAA 60.390 50.000 5.55 0.00 42.21 4.08
451 462 0.390209 AATTTGGCCGCAGATGCAAC 60.390 50.000 5.55 0.00 42.21 4.17
452 463 2.546645 ATTTGGCCGCAGATGCAACG 62.547 55.000 5.55 0.00 42.21 4.10
456 467 3.853330 CCGCAGATGCAACGGTCG 61.853 66.667 11.38 7.91 42.01 4.79
457 468 2.809174 CGCAGATGCAACGGTCGA 60.809 61.111 5.55 0.00 42.21 4.20
458 469 2.792290 CGCAGATGCAACGGTCGAG 61.792 63.158 5.55 0.00 42.21 4.04
459 470 1.738099 GCAGATGCAACGGTCGAGT 60.738 57.895 0.00 0.00 41.59 4.18
460 471 0.457853 GCAGATGCAACGGTCGAGTA 60.458 55.000 0.00 0.00 41.59 2.59
461 472 1.550065 CAGATGCAACGGTCGAGTAG 58.450 55.000 0.00 0.00 0.00 2.57
462 473 0.179134 AGATGCAACGGTCGAGTAGC 60.179 55.000 0.00 0.00 0.00 3.58
463 474 0.179134 GATGCAACGGTCGAGTAGCT 60.179 55.000 0.00 0.00 0.00 3.32
464 475 0.246635 ATGCAACGGTCGAGTAGCTT 59.753 50.000 0.00 0.00 0.00 3.74
465 476 0.666274 TGCAACGGTCGAGTAGCTTG 60.666 55.000 0.00 0.00 0.00 4.01
466 477 0.388134 GCAACGGTCGAGTAGCTTGA 60.388 55.000 0.00 0.00 0.00 3.02
467 478 1.933500 GCAACGGTCGAGTAGCTTGAA 60.934 52.381 0.00 0.00 0.00 2.69
468 479 2.400399 CAACGGTCGAGTAGCTTGAAA 58.600 47.619 0.00 0.00 0.00 2.69
469 480 2.798283 CAACGGTCGAGTAGCTTGAAAA 59.202 45.455 0.00 0.00 0.00 2.29
495 506 5.199024 CAAACAGATTTGGTTCATGTGGA 57.801 39.130 0.00 0.00 41.39 4.02
496 507 5.786311 CAAACAGATTTGGTTCATGTGGAT 58.214 37.500 0.00 0.00 41.39 3.41
497 508 6.923012 CAAACAGATTTGGTTCATGTGGATA 58.077 36.000 0.00 0.00 41.39 2.59
498 509 6.764308 AACAGATTTGGTTCATGTGGATAG 57.236 37.500 0.00 0.00 0.00 2.08
499 510 4.641989 ACAGATTTGGTTCATGTGGATAGC 59.358 41.667 0.00 0.00 0.00 2.97
500 511 4.641541 CAGATTTGGTTCATGTGGATAGCA 59.358 41.667 0.00 0.00 0.00 3.49
501 512 4.641989 AGATTTGGTTCATGTGGATAGCAC 59.358 41.667 0.00 0.00 0.00 4.40
502 513 3.719268 TTGGTTCATGTGGATAGCACT 57.281 42.857 0.00 0.00 0.00 4.40
503 514 2.989909 TGGTTCATGTGGATAGCACTG 58.010 47.619 0.00 0.00 0.00 3.66
504 515 1.672881 GGTTCATGTGGATAGCACTGC 59.327 52.381 0.00 0.00 0.00 4.40
505 516 2.358957 GTTCATGTGGATAGCACTGCA 58.641 47.619 3.30 0.00 0.00 4.41
506 517 2.749076 GTTCATGTGGATAGCACTGCAA 59.251 45.455 3.30 0.00 0.00 4.08
507 518 3.286329 TCATGTGGATAGCACTGCAAT 57.714 42.857 3.30 0.00 0.00 3.56
508 519 2.946990 TCATGTGGATAGCACTGCAATG 59.053 45.455 3.30 0.00 0.00 2.82
509 520 2.785540 TGTGGATAGCACTGCAATGA 57.214 45.000 0.00 0.00 0.00 2.57
510 521 3.286329 TGTGGATAGCACTGCAATGAT 57.714 42.857 0.00 0.00 0.00 2.45
511 522 3.623703 TGTGGATAGCACTGCAATGATT 58.376 40.909 0.00 0.00 0.00 2.57
512 523 4.018490 TGTGGATAGCACTGCAATGATTT 58.982 39.130 0.00 0.00 0.00 2.17
513 524 4.096833 TGTGGATAGCACTGCAATGATTTC 59.903 41.667 0.00 0.00 0.00 2.17
514 525 4.096833 GTGGATAGCACTGCAATGATTTCA 59.903 41.667 0.00 0.00 0.00 2.69
515 526 4.337274 TGGATAGCACTGCAATGATTTCAG 59.663 41.667 0.00 3.28 0.00 3.02
516 527 2.649331 AGCACTGCAATGATTTCAGC 57.351 45.000 0.00 0.00 0.00 4.26
517 528 1.135489 AGCACTGCAATGATTTCAGCG 60.135 47.619 0.00 0.00 0.00 5.18
518 529 1.401931 GCACTGCAATGATTTCAGCGT 60.402 47.619 0.00 0.00 0.00 5.07
519 530 2.247637 CACTGCAATGATTTCAGCGTG 58.752 47.619 4.74 1.85 0.00 5.34
520 531 1.265568 CTGCAATGATTTCAGCGTGC 58.734 50.000 0.00 6.68 34.57 5.34
521 532 0.454789 TGCAATGATTTCAGCGTGCG 60.455 50.000 0.00 0.00 35.87 5.34
522 533 0.454957 GCAATGATTTCAGCGTGCGT 60.455 50.000 0.00 0.00 0.00 5.24
523 534 1.202020 GCAATGATTTCAGCGTGCGTA 60.202 47.619 0.00 0.00 0.00 4.42
524 535 2.539547 GCAATGATTTCAGCGTGCGTAT 60.540 45.455 0.00 0.00 0.00 3.06
525 536 3.031126 CAATGATTTCAGCGTGCGTATG 58.969 45.455 0.00 0.00 0.00 2.39
526 537 0.373370 TGATTTCAGCGTGCGTATGC 59.627 50.000 9.96 9.96 43.20 3.14
527 538 0.316196 GATTTCAGCGTGCGTATGCC 60.316 55.000 14.44 0.00 41.78 4.40
528 539 0.744414 ATTTCAGCGTGCGTATGCCT 60.744 50.000 14.44 0.00 41.78 4.75
529 540 0.953471 TTTCAGCGTGCGTATGCCTT 60.953 50.000 14.44 0.00 41.78 4.35
530 541 0.108567 TTCAGCGTGCGTATGCCTTA 60.109 50.000 14.44 0.00 41.78 2.69
531 542 0.104120 TCAGCGTGCGTATGCCTTAT 59.896 50.000 14.44 0.00 41.78 1.73
532 543 0.508641 CAGCGTGCGTATGCCTTATC 59.491 55.000 14.44 0.00 41.78 1.75
533 544 0.600255 AGCGTGCGTATGCCTTATCC 60.600 55.000 14.44 0.00 41.78 2.59
534 545 0.600255 GCGTGCGTATGCCTTATCCT 60.600 55.000 6.41 0.00 41.78 3.24
535 546 1.139989 CGTGCGTATGCCTTATCCTG 58.860 55.000 4.05 0.00 41.78 3.86
536 547 1.269569 CGTGCGTATGCCTTATCCTGA 60.270 52.381 4.05 0.00 41.78 3.86
537 548 2.610479 CGTGCGTATGCCTTATCCTGAT 60.610 50.000 4.05 0.00 41.78 2.90
538 549 3.403038 GTGCGTATGCCTTATCCTGATT 58.597 45.455 4.05 0.00 41.78 2.57
539 550 4.566004 GTGCGTATGCCTTATCCTGATTA 58.434 43.478 4.05 0.00 41.78 1.75
540 551 4.994852 GTGCGTATGCCTTATCCTGATTAA 59.005 41.667 4.05 0.00 41.78 1.40
541 552 5.643777 GTGCGTATGCCTTATCCTGATTAAT 59.356 40.000 4.05 0.00 41.78 1.40
542 553 6.149474 GTGCGTATGCCTTATCCTGATTAATT 59.851 38.462 4.05 0.00 41.78 1.40
543 554 6.149308 TGCGTATGCCTTATCCTGATTAATTG 59.851 38.462 4.05 0.00 41.78 2.32
544 555 6.371548 GCGTATGCCTTATCCTGATTAATTGA 59.628 38.462 0.00 0.00 33.98 2.57
545 556 7.094805 GCGTATGCCTTATCCTGATTAATTGAA 60.095 37.037 0.00 0.00 33.98 2.69
546 557 8.446273 CGTATGCCTTATCCTGATTAATTGAAG 58.554 37.037 0.00 0.00 0.00 3.02
547 558 9.289782 GTATGCCTTATCCTGATTAATTGAAGT 57.710 33.333 0.00 0.00 0.00 3.01
548 559 8.773033 ATGCCTTATCCTGATTAATTGAAGTT 57.227 30.769 0.00 0.00 0.00 2.66
549 560 8.593945 TGCCTTATCCTGATTAATTGAAGTTT 57.406 30.769 0.00 0.00 0.00 2.66
550 561 9.034800 TGCCTTATCCTGATTAATTGAAGTTTT 57.965 29.630 0.00 0.00 0.00 2.43
563 574 9.974980 TTAATTGAAGTTTTATCCAAGAACCAC 57.025 29.630 0.00 0.00 0.00 4.16
564 575 7.595819 ATTGAAGTTTTATCCAAGAACCACA 57.404 32.000 0.00 0.00 0.00 4.17
588 599 1.149986 TCATGGGGTGGTGGTACAAA 58.850 50.000 0.00 0.00 44.16 2.83
593 604 1.340697 GGGGTGGTGGTACAAATCCTC 60.341 57.143 0.00 0.00 44.16 3.71
610 621 4.123497 TCCTCATCCTCACATTTACACG 57.877 45.455 0.00 0.00 0.00 4.49
632 645 4.235065 CGATGCGCCACTAGCTAG 57.765 61.111 19.44 19.44 40.39 3.42
633 646 1.372251 CGATGCGCCACTAGCTAGG 60.372 63.158 24.35 10.10 40.39 3.02
635 648 0.605589 GATGCGCCACTAGCTAGGAT 59.394 55.000 24.35 4.68 40.39 3.24
636 649 1.001406 GATGCGCCACTAGCTAGGATT 59.999 52.381 24.35 0.79 40.39 3.01
637 650 0.830648 TGCGCCACTAGCTAGGATTT 59.169 50.000 24.35 0.40 40.39 2.17
639 652 2.632996 TGCGCCACTAGCTAGGATTTAT 59.367 45.455 24.35 0.00 40.39 1.40
640 653 3.071023 TGCGCCACTAGCTAGGATTTATT 59.929 43.478 24.35 0.00 40.39 1.40
641 654 4.065789 GCGCCACTAGCTAGGATTTATTT 58.934 43.478 24.35 0.00 40.39 1.40
642 655 5.221561 TGCGCCACTAGCTAGGATTTATTTA 60.222 40.000 24.35 0.38 40.39 1.40
652 702 5.416013 GCTAGGATTTATTTACCCCTCATGC 59.584 44.000 0.00 0.00 0.00 4.06
664 715 2.943033 CCCCTCATGCTTAGGTAAAACG 59.057 50.000 0.00 0.00 31.70 3.60
667 718 3.063997 CCTCATGCTTAGGTAAAACGCAG 59.936 47.826 0.00 0.00 33.72 5.18
669 720 1.161843 TGCTTAGGTAAAACGCAGGC 58.838 50.000 0.00 0.00 0.00 4.85
671 722 1.538075 GCTTAGGTAAAACGCAGGCAA 59.462 47.619 0.00 0.00 0.00 4.52
674 725 4.805219 CTTAGGTAAAACGCAGGCAAAAT 58.195 39.130 0.00 0.00 0.00 1.82
679 730 2.741759 AAACGCAGGCAAAATTAGGG 57.258 45.000 0.00 0.00 0.00 3.53
685 736 1.207811 CAGGCAAAATTAGGGGGCAAG 59.792 52.381 0.00 0.00 0.00 4.01
687 738 1.207089 GGCAAAATTAGGGGGCAAGAC 59.793 52.381 0.00 0.00 0.00 3.01
688 739 1.135112 GCAAAATTAGGGGGCAAGACG 60.135 52.381 0.00 0.00 0.00 4.18
695 786 1.201429 AGGGGGCAAGACGAATGACT 61.201 55.000 0.00 0.00 0.00 3.41
697 788 0.036388 GGGGCAAGACGAATGACTCA 60.036 55.000 0.00 0.00 0.00 3.41
699 790 2.151202 GGGCAAGACGAATGACTCAAA 58.849 47.619 0.00 0.00 0.00 2.69
709 800 3.933332 CGAATGACTCAAAACCCTAGTCC 59.067 47.826 0.00 0.00 39.10 3.85
710 801 4.562757 CGAATGACTCAAAACCCTAGTCCA 60.563 45.833 0.00 0.00 39.10 4.02
781 876 4.559063 CCCGCATGCCTCCTCCAG 62.559 72.222 13.15 0.00 0.00 3.86
795 890 0.034059 CTCCAGAGTCCACACACCAC 59.966 60.000 0.00 0.00 0.00 4.16
803 898 2.510411 CACACACCACCTCAGCCA 59.490 61.111 0.00 0.00 0.00 4.75
805 900 1.073722 ACACACCACCTCAGCCATG 59.926 57.895 0.00 0.00 0.00 3.66
817 916 2.114670 AGCCATGCACATGTACGGC 61.115 57.895 15.55 15.55 37.11 5.68
831 930 0.102300 TACGGCGATGGTGAGACATG 59.898 55.000 16.62 0.00 0.00 3.21
854 953 2.036958 TGCTACCCAAATCATCACCG 57.963 50.000 0.00 0.00 0.00 4.94
856 955 0.937304 CTACCCAAATCATCACCGCG 59.063 55.000 0.00 0.00 0.00 6.46
857 956 1.092921 TACCCAAATCATCACCGCGC 61.093 55.000 0.00 0.00 0.00 6.86
934 1046 2.096248 ACTACACTACCAGCTCTCAGC 58.904 52.381 0.00 0.00 42.84 4.26
965 1080 1.617850 CACTGCACTTCCTCTCACTCT 59.382 52.381 0.00 0.00 0.00 3.24
978 1093 5.044919 TCCTCTCACTCTGATCTCTTCTTCT 60.045 44.000 0.00 0.00 0.00 2.85
979 1094 5.297776 CCTCTCACTCTGATCTCTTCTTCTC 59.702 48.000 0.00 0.00 0.00 2.87
980 1095 5.192927 TCTCACTCTGATCTCTTCTTCTCC 58.807 45.833 0.00 0.00 0.00 3.71
982 1097 5.579047 TCACTCTGATCTCTTCTTCTCCTT 58.421 41.667 0.00 0.00 0.00 3.36
983 1098 5.652014 TCACTCTGATCTCTTCTTCTCCTTC 59.348 44.000 0.00 0.00 0.00 3.46
984 1099 4.640201 ACTCTGATCTCTTCTTCTCCTTCG 59.360 45.833 0.00 0.00 0.00 3.79
1401 1531 4.643387 AGCTTCACCGTGTGGGCC 62.643 66.667 0.00 0.00 40.62 5.80
1427 1557 4.452733 GGAGGACGACCCGGCAAG 62.453 72.222 0.00 0.00 36.10 4.01
1428 1558 4.452733 GAGGACGACCCGGCAAGG 62.453 72.222 0.00 0.00 36.10 3.61
1587 1717 1.515088 CGTGAGCGTCTACTGCAGG 60.515 63.158 19.93 0.36 33.85 4.85
1638 1768 2.125952 GGTACGTACGGCCACCAC 60.126 66.667 21.06 6.98 0.00 4.16
1639 1769 2.504681 GTACGTACGGCCACCACG 60.505 66.667 21.06 16.64 41.32 4.94
1643 1773 1.372748 CGTACGGCCACCACGTAAA 60.373 57.895 7.57 0.00 46.77 2.01
1644 1774 0.737019 CGTACGGCCACCACGTAAAT 60.737 55.000 7.57 0.00 46.77 1.40
1656 1786 2.453080 CACGTAAATGGTGCATGCATC 58.547 47.619 25.64 24.97 0.00 3.91
1667 1797 2.919229 GTGCATGCATCTGCTAAACAAC 59.081 45.455 25.64 1.60 42.75 3.32
1671 1801 4.418392 CATGCATCTGCTAAACAACTTCC 58.582 43.478 0.00 0.00 42.66 3.46
1673 1803 4.081406 TGCATCTGCTAAACAACTTCCAT 58.919 39.130 3.53 0.00 42.66 3.41
1677 1807 6.261826 GCATCTGCTAAACAACTTCCATAGAT 59.738 38.462 0.00 0.00 38.21 1.98
1678 1808 7.637229 CATCTGCTAAACAACTTCCATAGATG 58.363 38.462 0.00 0.00 33.18 2.90
1679 1809 6.711277 TCTGCTAAACAACTTCCATAGATGT 58.289 36.000 0.00 0.00 41.17 3.06
1681 1811 7.334421 TCTGCTAAACAACTTCCATAGATGTTC 59.666 37.037 0.00 0.00 45.74 3.18
1683 1813 7.119699 TGCTAAACAACTTCCATAGATGTTCTG 59.880 37.037 0.00 0.00 45.74 3.02
1696 1828 5.604758 AGATGTTCTGATCGAGATCCAAA 57.395 39.130 10.24 2.67 37.02 3.28
1697 1829 6.172136 AGATGTTCTGATCGAGATCCAAAT 57.828 37.500 10.24 0.00 37.02 2.32
1698 1830 6.590068 AGATGTTCTGATCGAGATCCAAATT 58.410 36.000 10.24 0.00 37.02 1.82
1699 1831 7.730084 AGATGTTCTGATCGAGATCCAAATTA 58.270 34.615 10.24 0.88 37.02 1.40
1700 1832 7.871973 AGATGTTCTGATCGAGATCCAAATTAG 59.128 37.037 10.24 1.05 37.02 1.73
1704 1899 7.353414 TCTGATCGAGATCCAAATTAGTCTT 57.647 36.000 10.24 0.00 37.02 3.01
1709 1904 9.352784 GATCGAGATCCAAATTAGTCTTCTATG 57.647 37.037 1.77 0.00 31.76 2.23
1724 1926 5.048294 GTCTTCTATGGACCTAGCTAGCTTC 60.048 48.000 24.88 14.53 0.00 3.86
1731 1933 3.227614 GACCTAGCTAGCTTCTAGCCTT 58.772 50.000 24.88 1.29 43.77 4.35
1735 1937 5.013547 CCTAGCTAGCTTCTAGCCTTCATA 58.986 45.833 24.88 0.00 43.77 2.15
1747 1949 7.349412 TCTAGCCTTCATAGGAGAAGTAAAC 57.651 40.000 0.00 0.00 45.05 2.01
1770 1974 1.215924 ACCCTAGCTAGTCCTCACTCC 59.784 57.143 19.31 0.00 33.62 3.85
1771 1975 1.497286 CCCTAGCTAGTCCTCACTCCT 59.503 57.143 19.31 0.00 33.62 3.69
1772 1976 2.488347 CCCTAGCTAGTCCTCACTCCTC 60.488 59.091 19.31 0.00 33.62 3.71
1773 1977 2.173782 CCTAGCTAGTCCTCACTCCTCA 59.826 54.545 19.31 0.00 33.62 3.86
1774 1978 2.137810 AGCTAGTCCTCACTCCTCAC 57.862 55.000 0.00 0.00 33.62 3.51
1775 1979 1.638589 AGCTAGTCCTCACTCCTCACT 59.361 52.381 0.00 0.00 33.62 3.41
1778 1982 2.685106 AGTCCTCACTCCTCACTTCA 57.315 50.000 0.00 0.00 0.00 3.02
1780 1984 1.964223 GTCCTCACTCCTCACTTCACA 59.036 52.381 0.00 0.00 0.00 3.58
1803 2014 6.656693 ACAGCTTGATGTGACTTAATTTAGCT 59.343 34.615 0.00 0.00 35.79 3.32
1806 2017 7.391554 AGCTTGATGTGACTTAATTTAGCTGAA 59.608 33.333 0.00 0.00 34.28 3.02
1827 2038 7.382218 GCTGAACACTTGCATTTTAATTGTACT 59.618 33.333 0.00 0.00 0.00 2.73
1906 2117 1.546548 GGAAGAACAAGGGCAAGAGCT 60.547 52.381 0.00 0.00 41.70 4.09
1907 2118 2.234143 GAAGAACAAGGGCAAGAGCTT 58.766 47.619 0.00 0.00 41.70 3.74
2315 2538 2.435059 GAAGGGGCTGAGCGTGAC 60.435 66.667 0.00 0.00 0.00 3.67
2353 2576 4.270153 TGGGGCTGGACCTGGACT 62.270 66.667 0.00 0.00 39.10 3.85
2358 2581 2.888863 CTGGACCTGGACTCGCTC 59.111 66.667 0.00 0.00 0.00 5.03
2455 2678 0.827368 GGAGGAGTACAAGGAGCTGG 59.173 60.000 0.00 0.00 0.00 4.85
2499 2731 3.775654 GACCGGGACAGGGAGCAG 61.776 72.222 6.32 0.00 35.02 4.24
2502 2734 4.767255 CGGGACAGGGAGCAGCAC 62.767 72.222 0.00 0.00 0.00 4.40
2503 2735 4.767255 GGGACAGGGAGCAGCACG 62.767 72.222 0.00 0.00 0.00 5.34
2504 2736 4.008933 GGACAGGGAGCAGCACGT 62.009 66.667 0.00 0.00 0.00 4.49
2509 2741 3.695606 GGGAGCAGCACGTCCTCA 61.696 66.667 0.00 0.00 32.90 3.86
2519 2751 1.908793 ACGTCCTCACCACCTCCAG 60.909 63.158 0.00 0.00 0.00 3.86
2565 2797 0.764369 TCGGCAGCCCCATCTAATCT 60.764 55.000 5.63 0.00 0.00 2.40
2567 2799 1.338200 CGGCAGCCCCATCTAATCTAC 60.338 57.143 5.63 0.00 0.00 2.59
2570 2802 2.353208 GCAGCCCCATCTAATCTACTCG 60.353 54.545 0.00 0.00 0.00 4.18
2571 2803 2.894126 CAGCCCCATCTAATCTACTCGT 59.106 50.000 0.00 0.00 0.00 4.18
2572 2804 4.079970 CAGCCCCATCTAATCTACTCGTA 58.920 47.826 0.00 0.00 0.00 3.43
2574 2806 5.186021 CAGCCCCATCTAATCTACTCGTAAT 59.814 44.000 0.00 0.00 0.00 1.89
2575 2807 5.419471 AGCCCCATCTAATCTACTCGTAATC 59.581 44.000 0.00 0.00 0.00 1.75
2576 2808 5.676584 GCCCCATCTAATCTACTCGTAATCG 60.677 48.000 0.00 0.00 38.55 3.34
2577 2809 5.646793 CCCCATCTAATCTACTCGTAATCGA 59.353 44.000 0.00 0.00 44.12 3.59
2578 2810 6.319152 CCCCATCTAATCTACTCGTAATCGAT 59.681 42.308 0.00 0.00 45.21 3.59
2580 2812 7.698550 CCCATCTAATCTACTCGTAATCGATTG 59.301 40.741 20.87 6.29 45.21 2.67
2581 2813 7.698550 CCATCTAATCTACTCGTAATCGATTGG 59.301 40.741 20.87 12.17 45.21 3.16
2582 2814 7.974482 TCTAATCTACTCGTAATCGATTGGA 57.026 36.000 20.87 15.53 45.21 3.53
2583 2815 7.804712 TCTAATCTACTCGTAATCGATTGGAC 58.195 38.462 20.87 10.68 45.21 4.02
2584 2816 6.387041 AATCTACTCGTAATCGATTGGACA 57.613 37.500 20.87 0.00 45.21 4.02
2585 2817 6.576662 ATCTACTCGTAATCGATTGGACAT 57.423 37.500 20.87 8.93 45.21 3.06
2586 2818 5.758924 TCTACTCGTAATCGATTGGACATG 58.241 41.667 20.87 6.23 45.21 3.21
2588 2820 5.201713 ACTCGTAATCGATTGGACATGAT 57.798 39.130 20.87 0.00 45.21 2.45
2589 2821 6.327279 ACTCGTAATCGATTGGACATGATA 57.673 37.500 20.87 0.00 45.21 2.15
2665 3165 7.101700 AGCCCAAGTAGTAGTGTGTTAAATAC 58.898 38.462 0.00 0.00 0.00 1.89
2667 3167 7.605309 GCCCAAGTAGTAGTGTGTTAAATACTT 59.395 37.037 0.00 0.00 33.49 2.24
2735 4450 6.642540 GGAAAGAAACATGAACCAATCAGAAC 59.357 38.462 0.00 0.00 42.53 3.01
2738 4453 1.812571 ACATGAACCAATCAGAACGCC 59.187 47.619 0.00 0.00 42.53 5.68
2753 4468 2.435059 GCCGCTCCTGTCTTGGTC 60.435 66.667 0.00 0.00 0.00 4.02
2757 4472 0.824109 CGCTCCTGTCTTGGTCCATA 59.176 55.000 0.00 0.00 0.00 2.74
2769 4484 3.290776 GTCCATATGACCGAGCACC 57.709 57.895 3.65 0.00 38.09 5.01
2816 4532 4.168760 GCTTGTGGATTTTGCATGTACTC 58.831 43.478 0.00 0.00 0.00 2.59
2817 4533 4.082571 GCTTGTGGATTTTGCATGTACTCT 60.083 41.667 0.00 0.00 0.00 3.24
2821 4537 3.191162 TGGATTTTGCATGTACTCTGTGC 59.809 43.478 0.00 0.49 39.26 4.57
2823 4539 0.516877 TTTGCATGTACTCTGTGCGC 59.483 50.000 0.00 0.00 41.61 6.09
2825 4541 0.530288 TGCATGTACTCTGTGCGCTA 59.470 50.000 9.73 0.00 41.61 4.26
2847 4563 4.335647 AGCACTGCGTCCTTGGGG 62.336 66.667 0.00 0.00 0.00 4.96
2989 4715 4.996434 GAGCATGGGGATCGGCGG 62.996 72.222 7.21 0.00 0.00 6.13
3051 4777 1.815421 CGGGTTTCATGCCTCCTCG 60.815 63.158 0.00 0.00 0.00 4.63
3089 4815 0.744414 ATCGCCCACAGTTTCCATCG 60.744 55.000 0.00 0.00 0.00 3.84
3090 4816 2.877691 GCCCACAGTTTCCATCGC 59.122 61.111 0.00 0.00 0.00 4.58
3124 6031 1.352622 TGGTCTGCAGGTCCCAACTT 61.353 55.000 15.13 0.00 0.00 2.66
3141 6048 5.063204 CCAACTTAATAATCATGGCCGAGA 58.937 41.667 0.00 0.00 0.00 4.04
3143 6050 5.552870 ACTTAATAATCATGGCCGAGAGT 57.447 39.130 0.00 0.00 0.00 3.24
3144 6051 5.930135 ACTTAATAATCATGGCCGAGAGTT 58.070 37.500 0.00 0.00 0.00 3.01
3152 6059 2.815647 GCCGAGAGTTTGAGGCGG 60.816 66.667 0.00 0.00 44.47 6.13
3189 6096 0.537600 TCGGGCGAATTCCAAACCAA 60.538 50.000 0.00 0.00 0.00 3.67
3196 6104 0.834261 AATTCCAAACCAACCGGGGG 60.834 55.000 6.32 10.02 42.91 5.40
3234 6146 0.597072 AGTCGAACACGGAGAGGAAC 59.403 55.000 0.00 0.00 0.00 3.62
3237 6149 1.080025 GAACACGGAGAGGAACGGG 60.080 63.158 0.00 0.00 39.87 5.28
3238 6150 2.502692 GAACACGGAGAGGAACGGGG 62.503 65.000 0.00 0.00 37.93 5.73
3239 6151 3.771160 CACGGAGAGGAACGGGGG 61.771 72.222 0.00 0.00 0.00 5.40
3240 6152 4.312152 ACGGAGAGGAACGGGGGT 62.312 66.667 0.00 0.00 0.00 4.95
3241 6153 3.001406 CGGAGAGGAACGGGGGTT 61.001 66.667 0.00 0.00 0.00 4.11
3242 6154 2.669240 GGAGAGGAACGGGGGTTG 59.331 66.667 0.00 0.00 0.00 3.77
3315 6233 8.386606 GTGTTACATCATGAAATTCAGAGAGAC 58.613 37.037 0.00 2.24 0.00 3.36
3316 6234 8.096414 TGTTACATCATGAAATTCAGAGAGACA 58.904 33.333 0.00 4.36 0.00 3.41
3320 6238 5.728471 TCATGAAATTCAGAGAGACAGACC 58.272 41.667 1.10 0.00 0.00 3.85
3321 6239 4.543590 TGAAATTCAGAGAGACAGACCC 57.456 45.455 0.00 0.00 0.00 4.46
3442 6364 5.500645 AAAAATAAGCAATCTACCTCGCC 57.499 39.130 0.00 0.00 0.00 5.54
3443 6365 2.841442 ATAAGCAATCTACCTCGCCC 57.159 50.000 0.00 0.00 0.00 6.13
3444 6366 1.789523 TAAGCAATCTACCTCGCCCT 58.210 50.000 0.00 0.00 0.00 5.19
3445 6367 0.179000 AAGCAATCTACCTCGCCCTG 59.821 55.000 0.00 0.00 0.00 4.45
3499 6421 4.162690 GCCCGCCGTCCAGAATCT 62.163 66.667 0.00 0.00 0.00 2.40
3500 6422 2.107141 CCCGCCGTCCAGAATCTC 59.893 66.667 0.00 0.00 0.00 2.75
3501 6423 2.278857 CCGCCGTCCAGAATCTCG 60.279 66.667 0.00 0.00 0.00 4.04
3502 6424 2.956964 CGCCGTCCAGAATCTCGC 60.957 66.667 0.00 0.00 0.00 5.03
3503 6425 2.956964 GCCGTCCAGAATCTCGCG 60.957 66.667 0.00 0.00 0.00 5.87
3504 6426 2.956964 CCGTCCAGAATCTCGCGC 60.957 66.667 0.00 0.00 0.00 6.86
3505 6427 2.956964 CGTCCAGAATCTCGCGCC 60.957 66.667 0.00 0.00 0.00 6.53
3506 6428 2.184322 GTCCAGAATCTCGCGCCA 59.816 61.111 0.00 0.00 0.00 5.69
3507 6429 1.227380 GTCCAGAATCTCGCGCCAT 60.227 57.895 0.00 0.00 0.00 4.40
3508 6430 1.068083 TCCAGAATCTCGCGCCATC 59.932 57.895 0.00 0.00 0.00 3.51
3509 6431 1.958205 CCAGAATCTCGCGCCATCC 60.958 63.158 0.00 0.00 0.00 3.51
3510 6432 1.227350 CAGAATCTCGCGCCATCCA 60.227 57.895 0.00 0.00 0.00 3.41
3511 6433 0.602106 CAGAATCTCGCGCCATCCAT 60.602 55.000 0.00 0.00 0.00 3.41
3512 6434 0.320247 AGAATCTCGCGCCATCCATC 60.320 55.000 0.00 0.00 0.00 3.51
3513 6435 1.294659 GAATCTCGCGCCATCCATCC 61.295 60.000 0.00 0.00 0.00 3.51
3514 6436 3.580100 ATCTCGCGCCATCCATCCG 62.580 63.158 0.00 0.00 0.00 4.18
3519 6441 4.552365 CGCCATCCATCCGCTGGT 62.552 66.667 2.61 0.00 46.08 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.494298 CAGTGCCAACTTTACCAAAATAAAAGT 59.506 33.333 0.00 0.00 43.43 2.66
1 2 7.494298 ACAGTGCCAACTTTACCAAAATAAAAG 59.506 33.333 0.00 0.00 32.98 2.27
2 3 7.331791 ACAGTGCCAACTTTACCAAAATAAAA 58.668 30.769 0.00 0.00 32.98 1.52
3 4 6.879400 ACAGTGCCAACTTTACCAAAATAAA 58.121 32.000 0.00 0.00 32.98 1.40
4 5 6.472686 ACAGTGCCAACTTTACCAAAATAA 57.527 33.333 0.00 0.00 32.98 1.40
5 6 6.773685 AGTACAGTGCCAACTTTACCAAAATA 59.226 34.615 0.00 0.00 39.44 1.40
6 7 5.596772 AGTACAGTGCCAACTTTACCAAAAT 59.403 36.000 0.00 0.00 39.44 1.82
13 14 3.880490 CCACAAGTACAGTGCCAACTTTA 59.120 43.478 11.68 0.00 32.98 1.85
24 25 9.599866 TCATAAGAAATCATACCACAAGTACAG 57.400 33.333 0.00 0.00 32.46 2.74
44 47 5.362430 AGAAAGGGTAGACAGAGCTCATAAG 59.638 44.000 17.77 5.23 0.00 1.73
47 50 3.704061 GAGAAAGGGTAGACAGAGCTCAT 59.296 47.826 17.77 2.84 0.00 2.90
48 51 3.093057 GAGAAAGGGTAGACAGAGCTCA 58.907 50.000 17.77 0.00 0.00 4.26
49 52 3.361786 AGAGAAAGGGTAGACAGAGCTC 58.638 50.000 5.27 5.27 0.00 4.09
50 53 3.466395 AGAGAAAGGGTAGACAGAGCT 57.534 47.619 0.00 0.00 0.00 4.09
54 57 4.249661 GCTTCAAGAGAAAGGGTAGACAG 58.750 47.826 0.00 0.00 32.35 3.51
57 60 3.521727 AGGCTTCAAGAGAAAGGGTAGA 58.478 45.455 0.00 0.00 32.35 2.59
121 126 5.405269 GCGCTCAAAAGGTTGAATTTGTAAT 59.595 36.000 0.00 0.00 43.18 1.89
145 150 2.742428 ATCACCCCATTCATGTGGAG 57.258 50.000 3.93 0.00 42.02 3.86
147 152 5.634118 ACTATAATCACCCCATTCATGTGG 58.366 41.667 0.00 0.00 39.05 4.17
274 281 4.513442 TCACTGTTTCTGGCATGGTATAC 58.487 43.478 0.00 0.00 0.00 1.47
280 291 7.325660 ACTAATAATCACTGTTTCTGGCATG 57.674 36.000 0.00 0.00 0.00 4.06
350 361 9.772973 TCTGCAAAAGTGTAGAAAGAAGTTATA 57.227 29.630 0.00 0.00 42.72 0.98
351 362 8.677148 TCTGCAAAAGTGTAGAAAGAAGTTAT 57.323 30.769 0.00 0.00 42.72 1.89
361 372 6.112734 TCTTGAAGTTCTGCAAAAGTGTAGA 58.887 36.000 4.17 0.00 43.82 2.59
362 373 6.363577 TCTTGAAGTTCTGCAAAAGTGTAG 57.636 37.500 4.17 0.00 38.72 2.74
363 374 6.942532 ATCTTGAAGTTCTGCAAAAGTGTA 57.057 33.333 4.17 0.00 0.00 2.90
364 375 5.841957 ATCTTGAAGTTCTGCAAAAGTGT 57.158 34.783 4.17 0.00 0.00 3.55
365 376 6.145535 GGTATCTTGAAGTTCTGCAAAAGTG 58.854 40.000 4.17 0.00 0.00 3.16
366 377 5.241728 GGGTATCTTGAAGTTCTGCAAAAGT 59.758 40.000 4.17 0.00 0.00 2.66
367 378 5.617751 CGGGTATCTTGAAGTTCTGCAAAAG 60.618 44.000 4.17 0.00 0.00 2.27
368 379 4.215399 CGGGTATCTTGAAGTTCTGCAAAA 59.785 41.667 4.17 0.00 0.00 2.44
369 380 3.751175 CGGGTATCTTGAAGTTCTGCAAA 59.249 43.478 4.17 0.00 0.00 3.68
370 381 3.007506 TCGGGTATCTTGAAGTTCTGCAA 59.992 43.478 4.17 0.00 0.00 4.08
371 382 2.565391 TCGGGTATCTTGAAGTTCTGCA 59.435 45.455 4.17 0.00 0.00 4.41
372 383 2.930682 GTCGGGTATCTTGAAGTTCTGC 59.069 50.000 4.17 0.00 0.00 4.26
373 384 3.195825 AGGTCGGGTATCTTGAAGTTCTG 59.804 47.826 4.17 0.00 0.00 3.02
374 385 3.442076 AGGTCGGGTATCTTGAAGTTCT 58.558 45.455 4.17 0.00 0.00 3.01
375 386 3.447944 AGAGGTCGGGTATCTTGAAGTTC 59.552 47.826 0.00 0.00 0.00 3.01
376 387 3.195825 CAGAGGTCGGGTATCTTGAAGTT 59.804 47.826 0.00 0.00 0.00 2.66
377 388 2.761208 CAGAGGTCGGGTATCTTGAAGT 59.239 50.000 0.00 0.00 0.00 3.01
378 389 2.482142 GCAGAGGTCGGGTATCTTGAAG 60.482 54.545 0.00 0.00 0.00 3.02
379 390 1.480954 GCAGAGGTCGGGTATCTTGAA 59.519 52.381 0.00 0.00 0.00 2.69
380 391 1.112113 GCAGAGGTCGGGTATCTTGA 58.888 55.000 0.00 0.00 0.00 3.02
381 392 0.824109 TGCAGAGGTCGGGTATCTTG 59.176 55.000 0.00 0.00 0.00 3.02
382 393 1.689273 GATGCAGAGGTCGGGTATCTT 59.311 52.381 0.00 0.00 0.00 2.40
383 394 1.333177 GATGCAGAGGTCGGGTATCT 58.667 55.000 0.00 0.00 0.00 1.98
384 395 0.318762 GGATGCAGAGGTCGGGTATC 59.681 60.000 0.00 0.00 0.00 2.24
385 396 0.398522 TGGATGCAGAGGTCGGGTAT 60.399 55.000 0.00 0.00 0.00 2.73
386 397 0.616395 TTGGATGCAGAGGTCGGGTA 60.616 55.000 0.00 0.00 0.00 3.69
387 398 1.274703 ATTGGATGCAGAGGTCGGGT 61.275 55.000 0.00 0.00 0.00 5.28
388 399 0.107017 AATTGGATGCAGAGGTCGGG 60.107 55.000 0.00 0.00 0.00 5.14
389 400 1.019673 CAATTGGATGCAGAGGTCGG 58.980 55.000 0.00 0.00 0.00 4.79
390 401 2.028420 TCAATTGGATGCAGAGGTCG 57.972 50.000 5.42 0.00 0.00 4.79
391 402 3.984508 CATCAATTGGATGCAGAGGTC 57.015 47.619 5.42 0.00 46.35 3.85
400 411 2.427812 TGAATGCGTGCATCAATTGGAT 59.572 40.909 7.94 0.00 35.31 3.41
401 412 1.817447 TGAATGCGTGCATCAATTGGA 59.183 42.857 7.94 0.00 35.31 3.53
402 413 2.281140 TGAATGCGTGCATCAATTGG 57.719 45.000 7.94 0.00 35.31 3.16
403 414 6.193959 CGATATATGAATGCGTGCATCAATTG 59.806 38.462 1.50 0.00 35.31 2.32
404 415 6.092533 TCGATATATGAATGCGTGCATCAATT 59.907 34.615 1.50 0.00 35.31 2.32
405 416 5.581874 TCGATATATGAATGCGTGCATCAAT 59.418 36.000 1.50 7.49 35.31 2.57
406 417 4.928615 TCGATATATGAATGCGTGCATCAA 59.071 37.500 1.50 0.00 35.31 2.57
407 418 4.327087 GTCGATATATGAATGCGTGCATCA 59.673 41.667 1.50 8.36 35.31 3.07
408 419 4.259970 GGTCGATATATGAATGCGTGCATC 60.260 45.833 1.50 2.95 35.31 3.91
409 420 3.618594 GGTCGATATATGAATGCGTGCAT 59.381 43.478 4.40 4.40 38.46 3.96
410 421 2.993220 GGTCGATATATGAATGCGTGCA 59.007 45.455 0.00 0.00 0.00 4.57
411 422 2.993220 TGGTCGATATATGAATGCGTGC 59.007 45.455 0.00 0.00 0.00 5.34
412 423 5.784750 ATTGGTCGATATATGAATGCGTG 57.215 39.130 0.00 0.00 0.00 5.34
413 424 6.348458 CCAAATTGGTCGATATATGAATGCGT 60.348 38.462 3.34 0.00 31.35 5.24
414 425 6.023435 CCAAATTGGTCGATATATGAATGCG 58.977 40.000 3.34 0.00 31.35 4.73
415 426 5.801947 GCCAAATTGGTCGATATATGAATGC 59.198 40.000 14.17 0.00 40.46 3.56
416 427 6.324819 GGCCAAATTGGTCGATATATGAATG 58.675 40.000 14.17 0.00 40.46 2.67
417 428 6.515272 GGCCAAATTGGTCGATATATGAAT 57.485 37.500 14.17 0.00 40.46 2.57
418 429 5.957842 GGCCAAATTGGTCGATATATGAA 57.042 39.130 14.17 0.00 40.46 2.57
428 439 0.179129 CATCTGCGGCCAAATTGGTC 60.179 55.000 14.17 10.58 40.46 4.02
429 440 1.892338 CATCTGCGGCCAAATTGGT 59.108 52.632 14.17 0.00 40.46 3.67
430 441 1.519898 GCATCTGCGGCCAAATTGG 60.520 57.895 7.84 7.84 41.55 3.16
431 442 0.390078 TTGCATCTGCGGCCAAATTG 60.390 50.000 2.24 0.00 45.83 2.32
432 443 0.390209 GTTGCATCTGCGGCCAAATT 60.390 50.000 2.24 0.00 45.83 1.82
433 444 1.216178 GTTGCATCTGCGGCCAAAT 59.784 52.632 2.24 0.00 45.83 2.32
434 445 2.650196 GTTGCATCTGCGGCCAAA 59.350 55.556 2.24 0.00 45.83 3.28
435 446 3.736100 CGTTGCATCTGCGGCCAA 61.736 61.111 2.24 0.00 45.83 4.52
440 451 2.792290 CTCGACCGTTGCATCTGCG 61.792 63.158 0.00 0.00 45.83 5.18
441 452 0.457853 TACTCGACCGTTGCATCTGC 60.458 55.000 0.00 0.00 42.50 4.26
442 453 1.550065 CTACTCGACCGTTGCATCTG 58.450 55.000 0.00 0.00 0.00 2.90
443 454 0.179134 GCTACTCGACCGTTGCATCT 60.179 55.000 6.41 0.00 36.03 2.90
444 455 0.179134 AGCTACTCGACCGTTGCATC 60.179 55.000 12.30 0.00 37.96 3.91
445 456 0.246635 AAGCTACTCGACCGTTGCAT 59.753 50.000 12.30 0.00 37.96 3.96
446 457 0.666274 CAAGCTACTCGACCGTTGCA 60.666 55.000 12.30 0.00 37.96 4.08
447 458 0.388134 TCAAGCTACTCGACCGTTGC 60.388 55.000 3.61 3.61 36.19 4.17
448 459 2.060326 TTCAAGCTACTCGACCGTTG 57.940 50.000 0.00 0.00 0.00 4.10
449 460 2.806608 TTTCAAGCTACTCGACCGTT 57.193 45.000 0.00 0.00 0.00 4.44
450 461 2.295349 TCTTTTCAAGCTACTCGACCGT 59.705 45.455 0.00 0.00 0.00 4.83
451 462 2.662156 GTCTTTTCAAGCTACTCGACCG 59.338 50.000 0.00 0.00 0.00 4.79
452 463 2.994578 GGTCTTTTCAAGCTACTCGACC 59.005 50.000 0.00 0.00 33.73 4.79
453 464 3.650139 TGGTCTTTTCAAGCTACTCGAC 58.350 45.455 0.00 0.00 0.00 4.20
454 465 4.330944 TTGGTCTTTTCAAGCTACTCGA 57.669 40.909 0.00 0.00 0.00 4.04
455 466 4.272504 TGTTTGGTCTTTTCAAGCTACTCG 59.727 41.667 0.00 0.00 0.00 4.18
456 467 5.527582 TCTGTTTGGTCTTTTCAAGCTACTC 59.472 40.000 0.00 0.00 0.00 2.59
457 468 5.437060 TCTGTTTGGTCTTTTCAAGCTACT 58.563 37.500 0.00 0.00 0.00 2.57
458 469 5.751243 TCTGTTTGGTCTTTTCAAGCTAC 57.249 39.130 0.00 0.00 0.00 3.58
459 470 6.959639 AATCTGTTTGGTCTTTTCAAGCTA 57.040 33.333 0.00 0.00 0.00 3.32
460 471 5.859205 AATCTGTTTGGTCTTTTCAAGCT 57.141 34.783 0.00 0.00 0.00 3.74
461 472 6.277918 CAAATCTGTTTGGTCTTTTCAAGC 57.722 37.500 0.00 0.00 40.78 4.01
473 484 5.199024 TCCACATGAACCAAATCTGTTTG 57.801 39.130 0.00 0.00 43.43 2.93
474 485 6.350445 GCTATCCACATGAACCAAATCTGTTT 60.350 38.462 0.00 0.00 0.00 2.83
475 486 5.126061 GCTATCCACATGAACCAAATCTGTT 59.874 40.000 0.00 0.00 0.00 3.16
476 487 4.641989 GCTATCCACATGAACCAAATCTGT 59.358 41.667 0.00 0.00 0.00 3.41
477 488 4.641541 TGCTATCCACATGAACCAAATCTG 59.358 41.667 0.00 0.00 0.00 2.90
478 489 4.641989 GTGCTATCCACATGAACCAAATCT 59.358 41.667 0.00 0.00 44.06 2.40
479 490 4.925068 GTGCTATCCACATGAACCAAATC 58.075 43.478 0.00 0.00 44.06 2.17
480 491 4.989279 GTGCTATCCACATGAACCAAAT 57.011 40.909 0.00 0.00 44.06 2.32
491 502 4.096833 TGAAATCATTGCAGTGCTATCCAC 59.903 41.667 17.60 4.62 45.01 4.02
492 503 4.271661 TGAAATCATTGCAGTGCTATCCA 58.728 39.130 17.60 3.50 0.00 3.41
493 504 4.792057 GCTGAAATCATTGCAGTGCTATCC 60.792 45.833 17.60 1.83 32.39 2.59
494 505 4.288531 GCTGAAATCATTGCAGTGCTATC 58.711 43.478 17.60 3.46 32.39 2.08
495 506 3.242969 CGCTGAAATCATTGCAGTGCTAT 60.243 43.478 17.60 11.82 33.99 2.97
496 507 2.096335 CGCTGAAATCATTGCAGTGCTA 59.904 45.455 17.60 9.57 33.99 3.49
497 508 1.135489 CGCTGAAATCATTGCAGTGCT 60.135 47.619 17.60 0.00 33.99 4.40
498 509 1.265568 CGCTGAAATCATTGCAGTGC 58.734 50.000 8.58 8.58 33.99 4.40
499 510 2.247637 CACGCTGAAATCATTGCAGTG 58.752 47.619 16.40 16.40 43.68 3.66
500 511 1.401931 GCACGCTGAAATCATTGCAGT 60.402 47.619 7.25 0.00 32.39 4.40
501 512 1.265568 GCACGCTGAAATCATTGCAG 58.734 50.000 0.13 0.13 0.00 4.41
502 513 0.454789 CGCACGCTGAAATCATTGCA 60.455 50.000 10.54 0.00 0.00 4.08
503 514 0.454957 ACGCACGCTGAAATCATTGC 60.455 50.000 0.00 3.09 0.00 3.56
504 515 2.804421 TACGCACGCTGAAATCATTG 57.196 45.000 0.00 0.00 0.00 2.82
505 516 2.539547 GCATACGCACGCTGAAATCATT 60.540 45.455 0.00 0.00 38.36 2.57
506 517 1.003545 GCATACGCACGCTGAAATCAT 60.004 47.619 0.00 0.00 38.36 2.45
507 518 0.373370 GCATACGCACGCTGAAATCA 59.627 50.000 0.00 0.00 38.36 2.57
508 519 0.316196 GGCATACGCACGCTGAAATC 60.316 55.000 0.00 0.00 41.24 2.17
509 520 0.744414 AGGCATACGCACGCTGAAAT 60.744 50.000 0.00 0.00 41.24 2.17
510 521 0.953471 AAGGCATACGCACGCTGAAA 60.953 50.000 0.00 0.00 41.24 2.69
511 522 0.108567 TAAGGCATACGCACGCTGAA 60.109 50.000 0.00 0.00 41.24 3.02
512 523 0.104120 ATAAGGCATACGCACGCTGA 59.896 50.000 0.00 0.00 41.24 4.26
513 524 0.508641 GATAAGGCATACGCACGCTG 59.491 55.000 0.00 0.00 41.24 5.18
514 525 0.600255 GGATAAGGCATACGCACGCT 60.600 55.000 0.00 0.00 41.24 5.07
515 526 0.600255 AGGATAAGGCATACGCACGC 60.600 55.000 0.00 0.00 41.24 5.34
516 527 1.139989 CAGGATAAGGCATACGCACG 58.860 55.000 0.00 0.00 41.24 5.34
517 528 2.526304 TCAGGATAAGGCATACGCAC 57.474 50.000 0.00 0.00 41.24 5.34
518 529 3.769739 AATCAGGATAAGGCATACGCA 57.230 42.857 0.00 0.00 41.24 5.24
519 530 6.371548 TCAATTAATCAGGATAAGGCATACGC 59.628 38.462 0.00 0.00 37.44 4.42
520 531 7.905604 TCAATTAATCAGGATAAGGCATACG 57.094 36.000 0.00 0.00 0.00 3.06
521 532 9.289782 ACTTCAATTAATCAGGATAAGGCATAC 57.710 33.333 0.00 0.00 0.00 2.39
522 533 9.866655 AACTTCAATTAATCAGGATAAGGCATA 57.133 29.630 0.00 0.00 0.00 3.14
523 534 8.773033 AACTTCAATTAATCAGGATAAGGCAT 57.227 30.769 0.00 0.00 0.00 4.40
524 535 8.593945 AAACTTCAATTAATCAGGATAAGGCA 57.406 30.769 0.00 0.00 0.00 4.75
537 548 9.974980 GTGGTTCTTGGATAAAACTTCAATTAA 57.025 29.630 0.00 0.00 0.00 1.40
538 549 9.137459 TGTGGTTCTTGGATAAAACTTCAATTA 57.863 29.630 0.00 0.00 0.00 1.40
539 550 8.017418 TGTGGTTCTTGGATAAAACTTCAATT 57.983 30.769 0.00 0.00 0.00 2.32
540 551 7.595819 TGTGGTTCTTGGATAAAACTTCAAT 57.404 32.000 0.00 0.00 0.00 2.57
541 552 7.411486 TTGTGGTTCTTGGATAAAACTTCAA 57.589 32.000 0.00 0.00 0.00 2.69
542 553 7.505585 AGATTGTGGTTCTTGGATAAAACTTCA 59.494 33.333 0.00 0.00 0.00 3.02
543 554 7.886338 AGATTGTGGTTCTTGGATAAAACTTC 58.114 34.615 0.00 0.00 0.00 3.01
544 555 7.839680 AGATTGTGGTTCTTGGATAAAACTT 57.160 32.000 0.00 0.00 0.00 2.66
545 556 7.505585 TGAAGATTGTGGTTCTTGGATAAAACT 59.494 33.333 0.00 0.00 33.65 2.66
546 557 7.657336 TGAAGATTGTGGTTCTTGGATAAAAC 58.343 34.615 0.00 0.00 33.65 2.43
547 558 7.831691 TGAAGATTGTGGTTCTTGGATAAAA 57.168 32.000 0.00 0.00 33.65 1.52
548 559 7.093814 CCATGAAGATTGTGGTTCTTGGATAAA 60.094 37.037 10.11 0.00 44.86 1.40
549 560 6.377996 CCATGAAGATTGTGGTTCTTGGATAA 59.622 38.462 10.11 0.00 44.86 1.75
550 561 5.887598 CCATGAAGATTGTGGTTCTTGGATA 59.112 40.000 10.11 0.00 44.86 2.59
551 562 4.708421 CCATGAAGATTGTGGTTCTTGGAT 59.292 41.667 10.11 0.00 44.86 3.41
552 563 4.081406 CCATGAAGATTGTGGTTCTTGGA 58.919 43.478 10.11 0.00 44.86 3.53
553 564 3.194116 CCCATGAAGATTGTGGTTCTTGG 59.806 47.826 0.00 9.09 43.10 3.61
554 565 3.194116 CCCCATGAAGATTGTGGTTCTTG 59.806 47.826 0.00 0.00 33.65 3.02
555 566 3.181418 ACCCCATGAAGATTGTGGTTCTT 60.181 43.478 0.00 0.00 36.16 2.52
556 567 2.379907 ACCCCATGAAGATTGTGGTTCT 59.620 45.455 0.00 0.00 0.00 3.01
557 568 2.493278 CACCCCATGAAGATTGTGGTTC 59.507 50.000 0.00 0.00 0.00 3.62
558 569 2.528564 CACCCCATGAAGATTGTGGTT 58.471 47.619 0.00 0.00 0.00 3.67
559 570 1.272648 CCACCCCATGAAGATTGTGGT 60.273 52.381 0.00 0.00 38.70 4.16
560 571 1.272648 ACCACCCCATGAAGATTGTGG 60.273 52.381 5.01 5.01 46.70 4.17
561 572 1.820519 CACCACCCCATGAAGATTGTG 59.179 52.381 0.00 0.00 0.00 3.33
562 573 1.272648 CCACCACCCCATGAAGATTGT 60.273 52.381 0.00 0.00 0.00 2.71
563 574 1.272648 ACCACCACCCCATGAAGATTG 60.273 52.381 0.00 0.00 0.00 2.67
564 575 1.084018 ACCACCACCCCATGAAGATT 58.916 50.000 0.00 0.00 0.00 2.40
588 599 4.697514 CGTGTAAATGTGAGGATGAGGAT 58.302 43.478 0.00 0.00 0.00 3.24
593 604 3.789791 GCATGCGTGTAAATGTGAGGATG 60.790 47.826 0.00 0.00 0.00 3.51
629 642 6.784031 AGCATGAGGGGTAAATAAATCCTAG 58.216 40.000 0.00 0.00 0.00 3.02
630 643 6.780198 AGCATGAGGGGTAAATAAATCCTA 57.220 37.500 0.00 0.00 0.00 2.94
631 644 5.669798 AGCATGAGGGGTAAATAAATCCT 57.330 39.130 0.00 0.00 0.00 3.24
632 645 6.434340 CCTAAGCATGAGGGGTAAATAAATCC 59.566 42.308 0.00 0.00 30.56 3.01
633 646 7.004691 ACCTAAGCATGAGGGGTAAATAAATC 58.995 38.462 0.00 0.00 43.20 2.17
635 648 6.335781 ACCTAAGCATGAGGGGTAAATAAA 57.664 37.500 0.00 0.00 43.20 1.40
636 649 5.987019 ACCTAAGCATGAGGGGTAAATAA 57.013 39.130 0.00 0.00 43.20 1.40
637 650 7.454553 TTTACCTAAGCATGAGGGGTAAATA 57.545 36.000 19.28 7.55 43.20 1.40
639 652 5.782677 TTTACCTAAGCATGAGGGGTAAA 57.217 39.130 19.28 19.28 43.20 2.01
640 653 5.503002 GTTTTACCTAAGCATGAGGGGTAA 58.497 41.667 0.00 6.43 43.20 2.85
641 654 4.383335 CGTTTTACCTAAGCATGAGGGGTA 60.383 45.833 0.00 0.00 43.20 3.69
642 655 3.621461 CGTTTTACCTAAGCATGAGGGGT 60.621 47.826 0.00 0.97 43.20 4.95
652 702 3.907894 TTTGCCTGCGTTTTACCTAAG 57.092 42.857 0.00 0.00 0.00 2.18
664 715 1.264045 TGCCCCCTAATTTTGCCTGC 61.264 55.000 0.00 0.00 0.00 4.85
667 718 1.207089 GTCTTGCCCCCTAATTTTGCC 59.793 52.381 0.00 0.00 0.00 4.52
669 720 2.442413 TCGTCTTGCCCCCTAATTTTG 58.558 47.619 0.00 0.00 0.00 2.44
671 722 2.891191 TTCGTCTTGCCCCCTAATTT 57.109 45.000 0.00 0.00 0.00 1.82
674 725 1.065709 GTCATTCGTCTTGCCCCCTAA 60.066 52.381 0.00 0.00 0.00 2.69
679 730 1.808411 TTGAGTCATTCGTCTTGCCC 58.192 50.000 0.00 0.00 0.00 5.36
685 736 4.566987 ACTAGGGTTTTGAGTCATTCGTC 58.433 43.478 0.00 0.00 0.00 4.20
687 738 3.933332 GGACTAGGGTTTTGAGTCATTCG 59.067 47.826 0.00 0.00 41.18 3.34
688 739 4.906618 TGGACTAGGGTTTTGAGTCATTC 58.093 43.478 0.00 0.00 41.18 2.67
722 813 3.590574 GGAAAGGGGGTGGCCACT 61.591 66.667 33.91 14.62 0.00 4.00
766 861 2.108566 CTCTGGAGGAGGCATGCG 59.891 66.667 12.44 0.00 38.35 4.73
781 876 0.034059 CTGAGGTGGTGTGTGGACTC 59.966 60.000 0.00 0.00 0.00 3.36
795 890 1.019673 GTACATGTGCATGGCTGAGG 58.980 55.000 9.11 0.00 42.91 3.86
803 898 1.159713 CCATCGCCGTACATGTGCAT 61.160 55.000 14.55 0.00 0.00 3.96
805 900 1.813753 ACCATCGCCGTACATGTGC 60.814 57.895 9.11 6.17 0.00 4.57
817 916 0.942252 CATGGCATGTCTCACCATCG 59.058 55.000 19.32 0.00 42.31 3.84
831 930 2.035066 GTGATGATTTGGGTAGCATGGC 59.965 50.000 0.00 0.00 0.00 4.40
854 953 1.741770 CACAAGGAGGTACAGGCGC 60.742 63.158 0.00 0.00 0.00 6.53
856 955 0.396811 ACACACAAGGAGGTACAGGC 59.603 55.000 0.00 0.00 0.00 4.85
857 956 1.416401 ACACACACAAGGAGGTACAGG 59.584 52.381 0.00 0.00 0.00 4.00
912 1016 1.819288 TGAGAGCTGGTAGTGTAGTGC 59.181 52.381 0.00 0.00 0.00 4.40
934 1046 3.372206 GGAAGTGCAGTGCATGTAACTAG 59.628 47.826 22.87 0.00 41.91 2.57
935 1047 3.007940 AGGAAGTGCAGTGCATGTAACTA 59.992 43.478 22.87 0.00 41.91 2.24
965 1080 2.428890 GGCGAAGGAGAAGAAGAGATCA 59.571 50.000 0.00 0.00 0.00 2.92
1029 1150 2.766229 GGCAGGAGGGAGGAGGAC 60.766 72.222 0.00 0.00 0.00 3.85
1194 1324 4.269523 TGCACCTGGAGGCACACC 62.270 66.667 12.46 0.00 40.37 4.16
1383 1513 3.357079 GCCCACACGGTGAAGCTG 61.357 66.667 16.29 2.14 35.23 4.24
1482 1612 4.074526 GAGCTCTCAGCCACGGCA 62.075 66.667 11.35 0.00 43.77 5.69
1487 1617 3.063526 GGTGTGAGCTCTCAGCCA 58.936 61.111 28.87 10.58 43.77 4.75
1491 1621 2.917227 TGCGGGTGTGAGCTCTCA 60.917 61.111 16.19 15.19 37.24 3.27
1587 1717 0.689080 TCTCCTCCTGCTCCATCACC 60.689 60.000 0.00 0.00 0.00 4.02
1628 1758 1.673009 CCATTTACGTGGTGGCCGT 60.673 57.895 0.00 0.00 42.06 5.68
1629 1759 3.183259 CCATTTACGTGGTGGCCG 58.817 61.111 0.00 0.00 34.46 6.13
1635 1765 0.525311 TGCATGCACCATTTACGTGG 59.475 50.000 18.46 0.00 45.04 4.94
1636 1766 2.097954 AGATGCATGCACCATTTACGTG 59.902 45.455 25.37 0.00 0.00 4.49
1637 1767 2.097954 CAGATGCATGCACCATTTACGT 59.902 45.455 25.37 2.84 0.00 3.57
1638 1768 2.723209 CAGATGCATGCACCATTTACG 58.277 47.619 25.37 1.88 0.00 3.18
1639 1769 2.466846 GCAGATGCATGCACCATTTAC 58.533 47.619 25.37 5.30 45.77 2.01
1656 1786 6.992063 ACATCTATGGAAGTTGTTTAGCAG 57.008 37.500 0.00 0.00 35.06 4.24
1667 1797 6.324561 TCTCGATCAGAACATCTATGGAAG 57.675 41.667 0.00 0.00 0.00 3.46
1671 1801 6.264841 TGGATCTCGATCAGAACATCTATG 57.735 41.667 8.97 0.00 39.54 2.23
1673 1803 6.715347 TTTGGATCTCGATCAGAACATCTA 57.285 37.500 8.97 0.00 39.54 1.98
1677 1807 6.878317 ACTAATTTGGATCTCGATCAGAACA 58.122 36.000 8.97 0.00 39.54 3.18
1678 1808 7.206687 AGACTAATTTGGATCTCGATCAGAAC 58.793 38.462 8.97 0.00 39.54 3.01
1679 1809 7.353414 AGACTAATTTGGATCTCGATCAGAA 57.647 36.000 8.97 3.64 39.54 3.02
1680 1810 6.968263 AGACTAATTTGGATCTCGATCAGA 57.032 37.500 8.97 0.00 39.54 3.27
1681 1811 7.432869 AGAAGACTAATTTGGATCTCGATCAG 58.567 38.462 8.97 0.00 39.54 2.90
1683 1813 9.352784 CATAGAAGACTAATTTGGATCTCGATC 57.647 37.037 0.00 0.00 33.35 3.69
1696 1828 6.661805 GCTAGCTAGGTCCATAGAAGACTAAT 59.338 42.308 22.10 0.00 34.56 1.73
1697 1829 6.005198 GCTAGCTAGGTCCATAGAAGACTAA 58.995 44.000 22.10 0.00 34.56 2.24
1698 1830 5.311121 AGCTAGCTAGGTCCATAGAAGACTA 59.689 44.000 17.69 0.00 34.56 2.59
1699 1831 4.105697 AGCTAGCTAGGTCCATAGAAGACT 59.894 45.833 17.69 1.47 34.56 3.24
1700 1832 4.403734 AGCTAGCTAGGTCCATAGAAGAC 58.596 47.826 17.69 0.00 0.00 3.01
1704 1899 4.733077 AGAAGCTAGCTAGGTCCATAGA 57.267 45.455 24.86 0.00 32.81 1.98
1709 1904 1.890489 GGCTAGAAGCTAGCTAGGTCC 59.110 57.143 24.86 17.17 41.99 4.46
1724 1926 7.113658 TGTTTACTTCTCCTATGAAGGCTAG 57.886 40.000 8.77 0.00 45.49 3.42
1731 1933 6.697641 AGGGTTTGTTTACTTCTCCTATGA 57.302 37.500 0.00 0.00 0.00 2.15
1735 1937 4.597940 AGCTAGGGTTTGTTTACTTCTCCT 59.402 41.667 0.00 0.00 0.00 3.69
1747 1949 3.100671 AGTGAGGACTAGCTAGGGTTTG 58.899 50.000 24.35 0.00 0.00 2.93
1778 1982 6.656693 AGCTAAATTAAGTCACATCAAGCTGT 59.343 34.615 0.00 0.00 35.40 4.40
1780 1984 6.881065 TCAGCTAAATTAAGTCACATCAAGCT 59.119 34.615 0.00 0.00 37.07 3.74
1806 2017 9.677567 CAGTTAGTACAATTAAAATGCAAGTGT 57.322 29.630 0.00 0.00 37.83 3.55
1827 2038 8.307921 TGTTAAACGTGCAATGTATACAGTTA 57.692 30.769 11.91 0.00 32.67 2.24
1830 2041 6.686679 CCATGTTAAACGTGCAATGTATACAG 59.313 38.462 11.91 0.00 32.67 2.74
1838 2049 3.181501 CCGATCCATGTTAAACGTGCAAT 60.182 43.478 0.00 0.00 33.88 3.56
1839 2050 2.160615 CCGATCCATGTTAAACGTGCAA 59.839 45.455 0.00 0.00 33.88 4.08
1906 2117 3.092841 GCACGACGCGTACGACAA 61.093 61.111 28.60 0.00 43.93 3.18
2430 2653 1.288335 TCCTTGTACTCCTCCTCCTCC 59.712 57.143 0.00 0.00 0.00 4.30
2491 2717 3.386237 GAGGACGTGCTGCTCCCT 61.386 66.667 16.62 0.75 31.05 4.20
2499 2731 2.048127 GAGGTGGTGAGGACGTGC 60.048 66.667 0.00 0.00 0.00 5.34
2500 2732 2.159819 CTGGAGGTGGTGAGGACGTG 62.160 65.000 0.00 0.00 0.00 4.49
2501 2733 1.908793 CTGGAGGTGGTGAGGACGT 60.909 63.158 0.00 0.00 0.00 4.34
2502 2734 2.973899 CTGGAGGTGGTGAGGACG 59.026 66.667 0.00 0.00 0.00 4.79
2503 2735 1.893919 GAGCTGGAGGTGGTGAGGAC 61.894 65.000 0.00 0.00 0.00 3.85
2504 2736 1.610673 GAGCTGGAGGTGGTGAGGA 60.611 63.158 0.00 0.00 0.00 3.71
2574 2806 9.462606 ACAGTATAGTATATCATGTCCAATCGA 57.537 33.333 0.00 0.00 0.00 3.59
2585 2817 9.816787 TGGGTGATGTAACAGTATAGTATATCA 57.183 33.333 0.00 0.00 0.00 2.15
2588 2820 9.596308 ACATGGGTGATGTAACAGTATAGTATA 57.404 33.333 0.00 0.00 43.96 1.47
2589 2821 8.492415 ACATGGGTGATGTAACAGTATAGTAT 57.508 34.615 0.00 0.00 43.96 2.12
2665 3165 6.410337 GCAAATCGTACTGAGTACTACGTAAG 59.590 42.308 19.42 11.41 36.93 2.34
2667 3167 5.582269 AGCAAATCGTACTGAGTACTACGTA 59.418 40.000 19.42 7.51 36.93 3.57
2668 3168 4.394300 AGCAAATCGTACTGAGTACTACGT 59.606 41.667 19.42 8.39 36.93 3.57
2669 3169 4.906423 AGCAAATCGTACTGAGTACTACG 58.094 43.478 19.42 10.32 36.93 3.51
2670 3170 7.115947 ACAAAAGCAAATCGTACTGAGTACTAC 59.884 37.037 19.42 0.00 36.93 2.73
2671 3171 7.149973 ACAAAAGCAAATCGTACTGAGTACTA 58.850 34.615 19.42 10.13 36.93 1.82
2672 3172 5.989777 ACAAAAGCAAATCGTACTGAGTACT 59.010 36.000 19.42 0.00 36.93 2.73
2673 3173 6.224420 ACAAAAGCAAATCGTACTGAGTAC 57.776 37.500 12.62 12.62 35.86 2.73
2674 3174 7.949903 TTACAAAAGCAAATCGTACTGAGTA 57.050 32.000 0.00 0.00 0.00 2.59
2675 3175 6.854496 TTACAAAAGCAAATCGTACTGAGT 57.146 33.333 0.00 0.00 0.00 3.41
2676 3176 9.988350 AATATTACAAAAGCAAATCGTACTGAG 57.012 29.630 0.00 0.00 0.00 3.35
2677 3177 9.767684 CAATATTACAAAAGCAAATCGTACTGA 57.232 29.630 0.00 0.00 0.00 3.41
2678 3178 8.523464 GCAATATTACAAAAGCAAATCGTACTG 58.477 33.333 0.00 0.00 0.00 2.74
2735 4450 4.379243 ACCAAGACAGGAGCGGCG 62.379 66.667 0.51 0.51 0.00 6.46
2738 4453 0.824109 TATGGACCAAGACAGGAGCG 59.176 55.000 0.00 0.00 0.00 5.03
2753 4468 1.956170 GCGGTGCTCGGTCATATGG 60.956 63.158 2.13 0.00 39.69 2.74
2781 4496 1.269102 CCACAAGCGTCTCGGTATAGG 60.269 57.143 0.00 0.00 36.27 2.57
2783 4498 1.753930 TCCACAAGCGTCTCGGTATA 58.246 50.000 0.00 0.00 36.27 1.47
2838 4554 1.406860 TTTGCTTTGCCCCCAAGGAC 61.407 55.000 0.00 0.00 38.24 3.85
2847 4563 1.443363 GCTCTCGCTTTGCTTTGCC 60.443 57.895 0.00 0.00 0.00 4.52
2922 4648 5.178996 CCATCATTCATTCGAGACATTCCTC 59.821 44.000 0.00 0.00 0.00 3.71
3034 4760 1.026718 CACGAGGAGGCATGAAACCC 61.027 60.000 0.00 0.00 0.00 4.11
3035 4761 0.321653 ACACGAGGAGGCATGAAACC 60.322 55.000 0.00 0.00 0.00 3.27
3036 4762 2.000447 GTACACGAGGAGGCATGAAAC 59.000 52.381 0.00 0.00 0.00 2.78
3072 4798 3.039202 GCGATGGAAACTGTGGGCG 62.039 63.158 0.00 0.00 0.00 6.13
3089 4815 2.171448 AGACCATCAGTACCAGATTGGC 59.829 50.000 0.00 5.16 42.67 4.52
3090 4816 3.801698 CAGACCATCAGTACCAGATTGG 58.198 50.000 0.00 1.81 45.02 3.16
3124 6031 5.924356 TCAAACTCTCGGCCATGATTATTA 58.076 37.500 2.24 0.00 0.00 0.98
3141 6048 0.326264 AATCTGCTCCGCCTCAAACT 59.674 50.000 0.00 0.00 0.00 2.66
3143 6050 1.743772 GCTAATCTGCTCCGCCTCAAA 60.744 52.381 0.00 0.00 0.00 2.69
3144 6051 0.179073 GCTAATCTGCTCCGCCTCAA 60.179 55.000 0.00 0.00 0.00 3.02
3152 6059 3.188048 CCCGAATGAATGCTAATCTGCTC 59.812 47.826 0.00 0.00 0.00 4.26
3159 6066 2.031258 TTCGCCCGAATGAATGCTAA 57.969 45.000 0.00 0.00 0.00 3.09
3196 6104 6.383415 TCGACTTTTTGCACCATATAAAACC 58.617 36.000 0.00 0.00 0.00 3.27
3197 6105 7.380065 TGTTCGACTTTTTGCACCATATAAAAC 59.620 33.333 0.00 0.00 0.00 2.43
3211 6119 2.101917 TCCTCTCCGTGTTCGACTTTTT 59.898 45.455 0.00 0.00 39.71 1.94
3297 6213 5.337894 GGGTCTGTCTCTCTGAATTTCATGA 60.338 44.000 0.00 0.00 0.00 3.07
3298 6214 4.874966 GGGTCTGTCTCTCTGAATTTCATG 59.125 45.833 0.00 0.00 0.00 3.07
3489 6411 1.218230 GATGGCGCGAGATTCTGGAC 61.218 60.000 12.10 0.00 0.00 4.02
3493 6415 0.320247 GATGGATGGCGCGAGATTCT 60.320 55.000 12.10 0.00 0.00 2.40
3494 6416 1.294659 GGATGGATGGCGCGAGATTC 61.295 60.000 12.10 0.00 0.00 2.52
3495 6417 1.302033 GGATGGATGGCGCGAGATT 60.302 57.895 12.10 0.00 0.00 2.40
3496 6418 2.345244 GGATGGATGGCGCGAGAT 59.655 61.111 12.10 0.00 0.00 2.75
3497 6419 4.284860 CGGATGGATGGCGCGAGA 62.285 66.667 12.10 0.00 0.00 4.04
3509 6431 3.278574 TCCAAAATAGAACCAGCGGATG 58.721 45.455 1.50 0.00 0.00 3.51
3510 6432 3.644966 TCCAAAATAGAACCAGCGGAT 57.355 42.857 1.50 0.00 0.00 4.18
3511 6433 3.426787 TTCCAAAATAGAACCAGCGGA 57.573 42.857 1.50 0.00 0.00 5.54
3512 6434 3.181487 CCATTCCAAAATAGAACCAGCGG 60.181 47.826 0.00 0.00 0.00 5.52
3513 6435 3.443681 ACCATTCCAAAATAGAACCAGCG 59.556 43.478 0.00 0.00 0.00 5.18
3514 6436 4.462483 TCACCATTCCAAAATAGAACCAGC 59.538 41.667 0.00 0.00 0.00 4.85
3515 6437 6.153340 ACATCACCATTCCAAAATAGAACCAG 59.847 38.462 0.00 0.00 0.00 4.00
3516 6438 6.015918 ACATCACCATTCCAAAATAGAACCA 58.984 36.000 0.00 0.00 0.00 3.67
3517 6439 6.152661 TCACATCACCATTCCAAAATAGAACC 59.847 38.462 0.00 0.00 0.00 3.62
3518 6440 7.156876 TCACATCACCATTCCAAAATAGAAC 57.843 36.000 0.00 0.00 0.00 3.01
3519 6441 7.959658 ATCACATCACCATTCCAAAATAGAA 57.040 32.000 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.