Multiple sequence alignment - TraesCS6D01G377500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G377500 chr6D 100.000 6019 0 0 1 6019 460373073 460367055 0.000000e+00 11116.0
1 TraesCS6D01G377500 chr6D 100.000 2397 0 0 1503 3899 460357897 460355501 0.000000e+00 4427.0
2 TraesCS6D01G377500 chr6D 90.166 844 59 10 606 1447 460282690 460283511 0.000000e+00 1077.0
3 TraesCS6D01G377500 chr6D 92.517 588 43 1 996 1582 460318302 460317715 0.000000e+00 841.0
4 TraesCS6D01G377500 chr6D 89.941 169 15 2 1431 1597 460283535 460283703 3.650000e-52 217.0
5 TraesCS6D01G377500 chr6A 95.003 5363 195 26 103 5426 606442851 606437523 0.000000e+00 8351.0
6 TraesCS6D01G377500 chr6A 83.246 1146 127 29 4688 5799 606368837 606367723 0.000000e+00 992.0
7 TraesCS6D01G377500 chr6A 90.476 42 2 2 5460 5501 606437488 606437449 3.000000e-03 54.7
8 TraesCS6D01G377500 chr6B 93.768 5071 246 26 165 5211 701151220 701146196 0.000000e+00 7550.0
9 TraesCS6D01G377500 chr6B 90.654 428 34 3 1161 1582 701061088 701060661 1.130000e-156 564.0
10 TraesCS6D01G377500 chr6B 85.057 174 11 7 5602 5763 701145745 701145575 4.830000e-36 163.0
11 TraesCS6D01G377500 chr6B 88.608 79 6 3 5487 5562 701146016 701145938 6.420000e-15 93.5
12 TraesCS6D01G377500 chr6B 92.727 55 4 0 86 140 701151267 701151213 5.000000e-11 80.5
13 TraesCS6D01G377500 chrUn 77.783 2012 386 40 1823 3805 34147638 34145659 0.000000e+00 1182.0
14 TraesCS6D01G377500 chrUn 77.783 2012 386 40 1823 3805 282031944 282029965 0.000000e+00 1182.0
15 TraesCS6D01G377500 chrUn 76.439 1876 394 24 1880 3734 34458467 34456619 0.000000e+00 972.0
16 TraesCS6D01G377500 chrUn 73.664 2658 572 80 2147 4755 314575343 314577921 0.000000e+00 913.0
17 TraesCS6D01G377500 chrUn 78.246 1425 273 24 1884 3288 34434998 34433591 0.000000e+00 880.0
18 TraesCS6D01G377500 chrUn 78.246 1425 273 24 1884 3288 35977873 35976466 0.000000e+00 880.0
19 TraesCS6D01G377500 chrUn 76.695 1652 318 50 2112 3734 324828737 324827124 0.000000e+00 856.0
20 TraesCS6D01G377500 chrUn 81.136 493 81 12 1817 2304 34313496 34313011 9.460000e-103 385.0
21 TraesCS6D01G377500 chrUn 97.619 42 1 0 5978 6019 341241303 341241344 8.370000e-09 73.1
22 TraesCS6D01G377500 chr3A 77.054 1874 379 33 1880 3735 8036468 8038308 0.000000e+00 1031.0
23 TraesCS6D01G377500 chr3A 78.389 981 184 22 1817 2781 8167067 8166099 3.990000e-171 612.0
24 TraesCS6D01G377500 chr3D 80.705 482 85 8 1817 2295 1119155 1119631 9.530000e-98 368.0
25 TraesCS6D01G377500 chr2B 100.000 45 0 0 5975 6019 382597940 382597896 3.870000e-12 84.2
26 TraesCS6D01G377500 chr2A 95.652 46 2 0 5974 6019 421063091 421063136 2.330000e-09 75.0
27 TraesCS6D01G377500 chr1A 97.619 42 1 0 5978 6019 569489330 569489289 8.370000e-09 73.1
28 TraesCS6D01G377500 chr1A 97.619 42 1 0 5978 6019 569512339 569512298 8.370000e-09 73.1
29 TraesCS6D01G377500 chr1A 97.619 42 1 0 5978 6019 569524622 569524581 8.370000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G377500 chr6D 460367055 460373073 6018 True 11116.00 11116 100.0000 1 6019 1 chr6D.!!$R3 6018
1 TraesCS6D01G377500 chr6D 460355501 460357897 2396 True 4427.00 4427 100.0000 1503 3899 1 chr6D.!!$R2 2396
2 TraesCS6D01G377500 chr6D 460317715 460318302 587 True 841.00 841 92.5170 996 1582 1 chr6D.!!$R1 586
3 TraesCS6D01G377500 chr6D 460282690 460283703 1013 False 647.00 1077 90.0535 606 1597 2 chr6D.!!$F1 991
4 TraesCS6D01G377500 chr6A 606437449 606442851 5402 True 4202.85 8351 92.7395 103 5501 2 chr6A.!!$R2 5398
5 TraesCS6D01G377500 chr6A 606367723 606368837 1114 True 992.00 992 83.2460 4688 5799 1 chr6A.!!$R1 1111
6 TraesCS6D01G377500 chr6B 701145575 701151267 5692 True 1971.75 7550 90.0400 86 5763 4 chr6B.!!$R2 5677
7 TraesCS6D01G377500 chrUn 34145659 34147638 1979 True 1182.00 1182 77.7830 1823 3805 1 chrUn.!!$R1 1982
8 TraesCS6D01G377500 chrUn 282029965 282031944 1979 True 1182.00 1182 77.7830 1823 3805 1 chrUn.!!$R6 1982
9 TraesCS6D01G377500 chrUn 34456619 34458467 1848 True 972.00 972 76.4390 1880 3734 1 chrUn.!!$R4 1854
10 TraesCS6D01G377500 chrUn 314575343 314577921 2578 False 913.00 913 73.6640 2147 4755 1 chrUn.!!$F1 2608
11 TraesCS6D01G377500 chrUn 34433591 34434998 1407 True 880.00 880 78.2460 1884 3288 1 chrUn.!!$R3 1404
12 TraesCS6D01G377500 chrUn 35976466 35977873 1407 True 880.00 880 78.2460 1884 3288 1 chrUn.!!$R5 1404
13 TraesCS6D01G377500 chrUn 324827124 324828737 1613 True 856.00 856 76.6950 2112 3734 1 chrUn.!!$R7 1622
14 TraesCS6D01G377500 chr3A 8036468 8038308 1840 False 1031.00 1031 77.0540 1880 3735 1 chr3A.!!$F1 1855
15 TraesCS6D01G377500 chr3A 8166099 8167067 968 True 612.00 612 78.3890 1817 2781 1 chr3A.!!$R1 964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.181114 AGTGAGTGCAGCTGGTCAAA 59.819 50.000 17.12 0.00 0.00 2.69 F
77 78 0.308993 GTGAGTGCAGCTGGTCAAAC 59.691 55.000 17.12 4.28 0.00 2.93 F
78 79 0.181114 TGAGTGCAGCTGGTCAAACT 59.819 50.000 17.12 0.00 0.00 2.66 F
366 382 0.687354 ATATCCTGTAGGCTTGCGGG 59.313 55.000 5.33 5.33 36.83 6.13 F
612 630 1.079323 AGGCAAATTTCTGGGGTCCAT 59.921 47.619 0.00 0.00 30.82 3.41 F
691 709 1.903877 AATCTGGCGGTGCACTAGCT 61.904 55.000 27.41 12.45 42.74 3.32 F
4442 4549 2.028112 TCTGCAGTAAAGGCTACCACTG 60.028 50.000 14.67 15.12 41.06 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1180 1202 3.892588 GACCACCATGTTTCTTTACCCAA 59.107 43.478 0.00 0.00 0.00 4.12 R
4047 4151 1.008079 GTGTGCTGGAACAAGCTGC 60.008 57.895 2.83 0.00 38.70 5.25 R
4048 4152 1.656441 GGTGTGCTGGAACAAGCTG 59.344 57.895 2.83 0.00 38.70 4.24 R
4442 4549 0.034337 TCTGAAAGTACCACCGGTGC 59.966 55.000 29.75 15.79 38.59 5.01 R
4630 4755 4.385310 GGTGGTCAGCTTTGGGAATAGTAT 60.385 45.833 0.00 0.00 0.00 2.12 R
4766 4893 2.282110 CATCGGTGCCCACAACCA 60.282 61.111 0.40 0.00 0.00 3.67 R
5820 6167 0.033504 GACAGCGTCCTGAACCTGAA 59.966 55.000 0.00 0.00 41.77 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.727123 TCTGGCTTTCTTGGTGTTGA 57.273 45.000 0.00 0.00 0.00 3.18
21 22 3.228188 TCTGGCTTTCTTGGTGTTGAT 57.772 42.857 0.00 0.00 0.00 2.57
22 23 4.365514 TCTGGCTTTCTTGGTGTTGATA 57.634 40.909 0.00 0.00 0.00 2.15
23 24 4.922206 TCTGGCTTTCTTGGTGTTGATAT 58.078 39.130 0.00 0.00 0.00 1.63
24 25 5.324409 TCTGGCTTTCTTGGTGTTGATATT 58.676 37.500 0.00 0.00 0.00 1.28
25 26 5.415701 TCTGGCTTTCTTGGTGTTGATATTC 59.584 40.000 0.00 0.00 0.00 1.75
26 27 5.076182 TGGCTTTCTTGGTGTTGATATTCA 58.924 37.500 0.00 0.00 0.00 2.57
27 28 5.183713 TGGCTTTCTTGGTGTTGATATTCAG 59.816 40.000 0.00 0.00 0.00 3.02
28 29 5.183904 GGCTTTCTTGGTGTTGATATTCAGT 59.816 40.000 0.00 0.00 0.00 3.41
29 30 6.374333 GGCTTTCTTGGTGTTGATATTCAGTA 59.626 38.462 0.00 0.00 0.00 2.74
30 31 7.094377 GGCTTTCTTGGTGTTGATATTCAGTAA 60.094 37.037 0.00 0.00 0.00 2.24
31 32 8.296713 GCTTTCTTGGTGTTGATATTCAGTAAA 58.703 33.333 0.00 0.00 0.00 2.01
48 49 8.948631 TTCAGTAAATATGACTGTTCCAGATC 57.051 34.615 14.58 0.00 43.95 2.75
49 50 7.203218 TCAGTAAATATGACTGTTCCAGATCG 58.797 38.462 14.58 0.00 43.95 3.69
50 51 6.980978 CAGTAAATATGACTGTTCCAGATCGT 59.019 38.462 9.06 0.00 39.61 3.73
51 52 8.135529 CAGTAAATATGACTGTTCCAGATCGTA 58.864 37.037 9.06 0.00 39.61 3.43
52 53 8.861086 AGTAAATATGACTGTTCCAGATCGTAT 58.139 33.333 0.00 1.78 35.18 3.06
53 54 9.477484 GTAAATATGACTGTTCCAGATCGTATT 57.523 33.333 0.00 6.79 36.50 1.89
59 60 8.234136 TGACTGTTCCAGATCGTATTATTAGT 57.766 34.615 0.00 0.00 35.18 2.24
60 61 8.135529 TGACTGTTCCAGATCGTATTATTAGTG 58.864 37.037 0.00 0.00 35.18 2.74
61 62 8.234136 ACTGTTCCAGATCGTATTATTAGTGA 57.766 34.615 0.00 0.00 35.18 3.41
62 63 8.353684 ACTGTTCCAGATCGTATTATTAGTGAG 58.646 37.037 0.00 0.00 35.18 3.51
63 64 8.234136 TGTTCCAGATCGTATTATTAGTGAGT 57.766 34.615 0.00 0.00 0.00 3.41
64 65 8.135529 TGTTCCAGATCGTATTATTAGTGAGTG 58.864 37.037 0.00 0.00 0.00 3.51
65 66 6.678878 TCCAGATCGTATTATTAGTGAGTGC 58.321 40.000 0.00 0.00 0.00 4.40
66 67 6.264518 TCCAGATCGTATTATTAGTGAGTGCA 59.735 38.462 0.00 0.00 0.00 4.57
67 68 6.584184 CCAGATCGTATTATTAGTGAGTGCAG 59.416 42.308 0.00 0.00 0.00 4.41
68 69 6.088749 CAGATCGTATTATTAGTGAGTGCAGC 59.911 42.308 0.00 0.00 0.00 5.25
69 70 5.515797 TCGTATTATTAGTGAGTGCAGCT 57.484 39.130 0.00 0.00 0.00 4.24
70 71 5.281727 TCGTATTATTAGTGAGTGCAGCTG 58.718 41.667 10.11 10.11 0.00 4.24
71 72 4.445718 CGTATTATTAGTGAGTGCAGCTGG 59.554 45.833 17.12 0.00 0.00 4.85
72 73 3.981071 TTATTAGTGAGTGCAGCTGGT 57.019 42.857 17.12 0.00 0.00 4.00
73 74 2.393271 ATTAGTGAGTGCAGCTGGTC 57.607 50.000 17.12 0.00 0.00 4.02
74 75 1.047801 TTAGTGAGTGCAGCTGGTCA 58.952 50.000 17.12 2.40 0.00 4.02
75 76 1.047801 TAGTGAGTGCAGCTGGTCAA 58.952 50.000 17.12 0.00 0.00 3.18
76 77 0.181114 AGTGAGTGCAGCTGGTCAAA 59.819 50.000 17.12 0.00 0.00 2.69
77 78 0.308993 GTGAGTGCAGCTGGTCAAAC 59.691 55.000 17.12 4.28 0.00 2.93
78 79 0.181114 TGAGTGCAGCTGGTCAAACT 59.819 50.000 17.12 0.00 0.00 2.66
79 80 1.312815 GAGTGCAGCTGGTCAAACTT 58.687 50.000 17.12 0.00 0.00 2.66
80 81 1.678101 GAGTGCAGCTGGTCAAACTTT 59.322 47.619 17.12 0.00 0.00 2.66
81 82 1.678101 AGTGCAGCTGGTCAAACTTTC 59.322 47.619 17.12 0.00 0.00 2.62
82 83 1.678101 GTGCAGCTGGTCAAACTTTCT 59.322 47.619 17.12 0.00 0.00 2.52
83 84 2.099756 GTGCAGCTGGTCAAACTTTCTT 59.900 45.455 17.12 0.00 0.00 2.52
84 85 2.358898 TGCAGCTGGTCAAACTTTCTTC 59.641 45.455 17.12 0.00 0.00 2.87
188 189 7.047891 TGTATGCTACAGTTAAGGAATTCAGG 58.952 38.462 7.93 0.00 34.06 3.86
222 223 6.150140 GTCCATGAATTCAGTAAGAGCTTTGT 59.850 38.462 14.54 0.00 0.00 2.83
321 337 7.756722 GGGTCATTTTTGTTATTCATCACTCAG 59.243 37.037 0.00 0.00 0.00 3.35
352 368 6.434340 AGGTCAGAAACAAAAGGTTCATATCC 59.566 38.462 0.00 0.00 39.29 2.59
366 382 0.687354 ATATCCTGTAGGCTTGCGGG 59.313 55.000 5.33 5.33 36.83 6.13
414 430 1.322442 GGCCAGGACAGGATATTTGC 58.678 55.000 0.00 0.00 0.00 3.68
483 501 4.798574 AGGAAAAAGAATAAAGCAGCACG 58.201 39.130 0.00 0.00 0.00 5.34
612 630 1.079323 AGGCAAATTTCTGGGGTCCAT 59.921 47.619 0.00 0.00 30.82 3.41
613 631 1.908619 GGCAAATTTCTGGGGTCCATT 59.091 47.619 0.00 0.00 30.82 3.16
643 661 3.181967 CTTCGGAGCGCGAACTGG 61.182 66.667 12.10 0.00 0.00 4.00
691 709 1.903877 AATCTGGCGGTGCACTAGCT 61.904 55.000 27.41 12.45 42.74 3.32
692 710 2.584261 ATCTGGCGGTGCACTAGCTG 62.584 60.000 27.41 21.77 42.74 4.24
759 777 4.016444 AGTCCAAGTTTCTGTGCTTCAAA 58.984 39.130 0.00 0.00 0.00 2.69
917 935 2.839486 TCTGTTGTGCAAGAGTAGGG 57.161 50.000 8.58 0.00 33.84 3.53
1022 1043 8.616076 CATCATGAGTCTTCCTAAATTGGTAAC 58.384 37.037 0.09 0.00 0.00 2.50
1031 1052 8.149647 TCTTCCTAAATTGGTAACGTTCTTGTA 58.850 33.333 2.82 0.00 42.51 2.41
1180 1202 2.041216 GGGACACTAGGTTGGGAAACAT 59.959 50.000 0.00 0.00 0.00 2.71
1351 1373 8.252624 AGTTAGGAATACTGAAAGGACCTATC 57.747 38.462 0.00 0.00 39.30 2.08
1353 1375 9.364653 GTTAGGAATACTGAAAGGACCTATCTA 57.635 37.037 0.00 0.00 39.30 1.98
1463 1526 4.336889 TGTGAGTGTTCCAAAGACCTAG 57.663 45.455 0.00 0.00 0.00 3.02
4047 4151 4.160065 TCTGAAGAAGAGAGCCTGAATCTG 59.840 45.833 0.00 0.00 0.00 2.90
4048 4152 2.985957 AGAAGAGAGCCTGAATCTGC 57.014 50.000 0.00 0.00 0.00 4.26
4442 4549 2.028112 TCTGCAGTAAAGGCTACCACTG 60.028 50.000 14.67 15.12 41.06 3.66
4775 4902 3.925630 ATCCGCTGCTGGTTGTGGG 62.926 63.158 9.66 0.00 34.82 4.61
4810 4937 3.882888 AGAGATCGAGAAGGATGTCTGTC 59.117 47.826 1.93 0.00 43.19 3.51
4823 4950 1.178276 GTCTGTCTCGAGGTGGATGT 58.822 55.000 13.56 0.00 0.00 3.06
4887 5014 2.284699 CCCAGGGTCTCCGTCCTT 60.285 66.667 0.00 0.00 38.33 3.36
4898 5025 3.314913 GTCTCCGTCCTTAGGTAGTAAGC 59.685 52.174 0.00 0.00 37.41 3.09
4937 5064 4.695455 TGATTCCATCTCTGTTTCGTTTCC 59.305 41.667 0.00 0.00 0.00 3.13
4942 5069 3.536956 TCTCTGTTTCGTTTCCACACT 57.463 42.857 0.00 0.00 0.00 3.55
4943 5070 4.659111 TCTCTGTTTCGTTTCCACACTA 57.341 40.909 0.00 0.00 0.00 2.74
4951 5078 4.445452 TCGTTTCCACACTATACCACTC 57.555 45.455 0.00 0.00 0.00 3.51
4967 5094 3.935203 ACCACTCATCGCATTTAGACTTG 59.065 43.478 0.00 0.00 0.00 3.16
4998 5126 8.155821 TCAACCATTTTCGTTGTATTGTCTTA 57.844 30.769 0.00 0.00 41.13 2.10
5007 5135 6.044046 TCGTTGTATTGTCTTACACACTTGT 58.956 36.000 0.00 0.00 40.02 3.16
5058 5186 2.434185 CCACCGTGACATGGGACG 60.434 66.667 18.07 10.83 35.31 4.79
5090 5218 0.677731 TGTGCTCCTATGGTTGCTGC 60.678 55.000 0.00 0.00 0.00 5.25
5091 5219 0.393537 GTGCTCCTATGGTTGCTGCT 60.394 55.000 0.00 0.00 0.00 4.24
5092 5220 0.393402 TGCTCCTATGGTTGCTGCTG 60.393 55.000 0.00 0.00 0.00 4.41
5116 5244 2.202570 CTGCATGCGCTTGGCTTC 60.203 61.111 22.96 8.30 44.05 3.86
5150 5278 0.042581 TGGATAGCCAGACACCTCCA 59.957 55.000 0.00 0.00 39.92 3.86
5178 5306 0.968405 ACCGGCTGTTCAATGCAAAT 59.032 45.000 0.00 0.00 0.00 2.32
5255 5387 2.159310 TGTTACTGCTTTTGTGGTGTGC 60.159 45.455 0.00 0.00 0.00 4.57
5263 5395 1.539157 TTTGTGGTGTGCTGTTGTGA 58.461 45.000 0.00 0.00 0.00 3.58
5323 5455 3.202097 GCTCTGGAATAAGAAGCTGACC 58.798 50.000 0.00 0.00 0.00 4.02
5365 5497 2.438254 TGGACCATGCCGATGTGC 60.438 61.111 0.00 0.00 0.00 4.57
5445 5601 8.325787 TGGATTGTTTGATACACCAGTAGTAAT 58.674 33.333 0.00 0.00 36.21 1.89
5447 5603 9.988350 GATTGTTTGATACACCAGTAGTAATTG 57.012 33.333 0.00 0.00 36.21 2.32
5456 5616 3.201290 CCAGTAGTAATTGAGCAGCCTG 58.799 50.000 0.00 0.00 0.00 4.85
5536 5699 7.215789 AGTGTTTGCCATGAATGTATTTGAAA 58.784 30.769 0.00 0.00 0.00 2.69
5540 5703 8.885722 GTTTGCCATGAATGTATTTGAAATGAT 58.114 29.630 0.00 0.00 0.00 2.45
5565 5732 0.179009 AAGCATCTGTGTGTGCCAGT 60.179 50.000 0.00 0.00 42.20 4.00
5571 5738 0.462581 CTGTGTGTGCCAGTCTGTGT 60.463 55.000 0.00 0.00 0.00 3.72
5591 5758 8.075574 TCTGTGTGTTTGTTAAATATGAGCTTG 58.924 33.333 0.00 0.00 0.00 4.01
5614 5944 6.946340 TGAAATCAAGAGCTACCTGTGATTA 58.054 36.000 9.10 0.00 0.00 1.75
5627 5957 4.253685 CCTGTGATTATGAAGTTGGTCGT 58.746 43.478 0.00 0.00 0.00 4.34
5630 5960 5.487433 TGTGATTATGAAGTTGGTCGTGAT 58.513 37.500 0.00 0.00 0.00 3.06
5681 6011 4.133078 TGCCATTTTGGTGTTCATTTTCC 58.867 39.130 0.00 0.00 40.46 3.13
5683 6013 4.712476 CCATTTTGGTGTTCATTTTCCCA 58.288 39.130 0.00 0.00 31.35 4.37
5685 6015 4.414337 TTTTGGTGTTCATTTTCCCAGG 57.586 40.909 0.00 0.00 0.00 4.45
5707 6037 2.606725 CTCTTGAAATGTAGCTGCCTCG 59.393 50.000 0.00 0.00 0.00 4.63
5715 6047 1.003839 TAGCTGCCTCGGGTGTTTG 60.004 57.895 0.00 0.00 0.00 2.93
5739 6076 1.229927 TGCCACAGCTTTTGGGACT 59.770 52.632 12.25 0.00 40.80 3.85
5755 6096 7.490657 TTTGGGACTAGTTTAATCAGAGCTA 57.509 36.000 0.00 0.00 0.00 3.32
5773 6120 2.360165 GCTAATTTACAGGCATGCTGCT 59.640 45.455 18.92 3.85 44.28 4.24
5794 6141 0.953727 TCGCTCAAGTTTGCAGCAAT 59.046 45.000 9.12 0.00 33.74 3.56
5816 6163 3.469008 CTGAACCCAGTCAGTACAACA 57.531 47.619 0.00 0.00 40.22 3.33
5817 6164 4.008074 CTGAACCCAGTCAGTACAACAT 57.992 45.455 0.00 0.00 40.22 2.71
5818 6165 4.389374 CTGAACCCAGTCAGTACAACATT 58.611 43.478 0.00 0.00 40.22 2.71
5819 6166 4.133820 TGAACCCAGTCAGTACAACATTG 58.866 43.478 0.00 0.00 0.00 2.82
5820 6167 3.857157 ACCCAGTCAGTACAACATTGT 57.143 42.857 2.32 2.32 44.86 2.71
5821 6168 4.164843 ACCCAGTCAGTACAACATTGTT 57.835 40.909 1.98 0.00 42.35 2.83
5822 6169 4.134563 ACCCAGTCAGTACAACATTGTTC 58.865 43.478 1.98 0.00 42.35 3.18
5823 6170 4.133820 CCCAGTCAGTACAACATTGTTCA 58.866 43.478 1.98 0.00 42.35 3.18
5824 6171 4.214119 CCCAGTCAGTACAACATTGTTCAG 59.786 45.833 1.98 0.00 42.35 3.02
5825 6172 4.214119 CCAGTCAGTACAACATTGTTCAGG 59.786 45.833 1.98 0.00 42.35 3.86
5826 6173 4.816385 CAGTCAGTACAACATTGTTCAGGT 59.184 41.667 1.98 0.00 42.35 4.00
5827 6174 5.296780 CAGTCAGTACAACATTGTTCAGGTT 59.703 40.000 1.98 0.00 42.35 3.50
5828 6175 5.527582 AGTCAGTACAACATTGTTCAGGTTC 59.472 40.000 1.98 0.00 42.35 3.62
5829 6176 5.295787 GTCAGTACAACATTGTTCAGGTTCA 59.704 40.000 1.98 0.00 42.35 3.18
5830 6177 5.527214 TCAGTACAACATTGTTCAGGTTCAG 59.473 40.000 1.98 0.00 42.35 3.02
5831 6178 4.821805 AGTACAACATTGTTCAGGTTCAGG 59.178 41.667 1.98 0.00 42.35 3.86
5832 6179 3.897239 ACAACATTGTTCAGGTTCAGGA 58.103 40.909 0.00 0.00 38.47 3.86
5833 6180 3.632145 ACAACATTGTTCAGGTTCAGGAC 59.368 43.478 0.00 0.00 38.47 3.85
5834 6181 2.494059 ACATTGTTCAGGTTCAGGACG 58.506 47.619 0.00 0.00 0.00 4.79
5835 6182 1.197721 CATTGTTCAGGTTCAGGACGC 59.802 52.381 0.00 0.00 0.00 5.19
5836 6183 0.468226 TTGTTCAGGTTCAGGACGCT 59.532 50.000 0.00 0.00 0.00 5.07
5837 6184 0.249868 TGTTCAGGTTCAGGACGCTG 60.250 55.000 0.00 0.00 0.00 5.18
5838 6185 0.249911 GTTCAGGTTCAGGACGCTGT 60.250 55.000 0.00 0.00 32.03 4.40
5839 6186 0.033504 TTCAGGTTCAGGACGCTGTC 59.966 55.000 0.79 0.79 32.03 3.51
5840 6187 1.112916 TCAGGTTCAGGACGCTGTCA 61.113 55.000 10.14 0.00 33.68 3.58
5841 6188 0.249868 CAGGTTCAGGACGCTGTCAA 60.250 55.000 10.14 0.00 33.68 3.18
5842 6189 0.034059 AGGTTCAGGACGCTGTCAAG 59.966 55.000 10.14 3.23 33.68 3.02
5843 6190 1.569479 GGTTCAGGACGCTGTCAAGC 61.569 60.000 10.14 3.48 46.66 4.01
5851 6198 4.641777 GCTGTCAAGCTTGGCAAC 57.358 55.556 31.70 24.96 46.60 4.17
5852 6199 1.735360 GCTGTCAAGCTTGGCAACA 59.265 52.632 31.70 23.28 46.60 3.33
5866 6213 1.797025 GCAACAAGCCTCTTACTCGT 58.203 50.000 0.00 0.00 37.23 4.18
5867 6214 1.727335 GCAACAAGCCTCTTACTCGTC 59.273 52.381 0.00 0.00 37.23 4.20
5868 6215 2.338500 CAACAAGCCTCTTACTCGTCC 58.662 52.381 0.00 0.00 0.00 4.79
5869 6216 1.926108 ACAAGCCTCTTACTCGTCCT 58.074 50.000 0.00 0.00 0.00 3.85
5870 6217 1.546476 ACAAGCCTCTTACTCGTCCTG 59.454 52.381 0.00 0.00 0.00 3.86
5871 6218 1.134965 CAAGCCTCTTACTCGTCCTGG 60.135 57.143 0.00 0.00 0.00 4.45
5872 6219 0.039911 AGCCTCTTACTCGTCCTGGT 59.960 55.000 0.00 0.00 0.00 4.00
5873 6220 0.173708 GCCTCTTACTCGTCCTGGTG 59.826 60.000 0.00 0.00 0.00 4.17
5874 6221 1.546961 CCTCTTACTCGTCCTGGTGT 58.453 55.000 0.00 0.00 0.00 4.16
5875 6222 2.719739 CCTCTTACTCGTCCTGGTGTA 58.280 52.381 0.00 0.00 0.00 2.90
5876 6223 3.288964 CCTCTTACTCGTCCTGGTGTAT 58.711 50.000 0.00 0.00 0.00 2.29
5877 6224 3.700038 CCTCTTACTCGTCCTGGTGTATT 59.300 47.826 0.00 0.00 0.00 1.89
5878 6225 4.885907 CCTCTTACTCGTCCTGGTGTATTA 59.114 45.833 0.00 0.00 0.00 0.98
5879 6226 5.359009 CCTCTTACTCGTCCTGGTGTATTAA 59.641 44.000 0.00 0.00 0.00 1.40
5880 6227 6.040616 CCTCTTACTCGTCCTGGTGTATTAAT 59.959 42.308 0.00 0.00 0.00 1.40
5881 6228 7.414222 TCTTACTCGTCCTGGTGTATTAATT 57.586 36.000 0.00 0.00 0.00 1.40
5882 6229 7.844009 TCTTACTCGTCCTGGTGTATTAATTT 58.156 34.615 0.00 0.00 0.00 1.82
5883 6230 8.316214 TCTTACTCGTCCTGGTGTATTAATTTT 58.684 33.333 0.00 0.00 0.00 1.82
5884 6231 6.980051 ACTCGTCCTGGTGTATTAATTTTC 57.020 37.500 0.00 0.00 0.00 2.29
5885 6232 5.878669 ACTCGTCCTGGTGTATTAATTTTCC 59.121 40.000 0.00 0.00 0.00 3.13
5886 6233 6.057321 TCGTCCTGGTGTATTAATTTTCCT 57.943 37.500 0.00 0.00 0.00 3.36
5887 6234 5.878116 TCGTCCTGGTGTATTAATTTTCCTG 59.122 40.000 0.00 0.00 0.00 3.86
5888 6235 5.646360 CGTCCTGGTGTATTAATTTTCCTGT 59.354 40.000 0.00 0.00 0.00 4.00
5889 6236 6.819649 CGTCCTGGTGTATTAATTTTCCTGTA 59.180 38.462 0.00 0.00 0.00 2.74
5890 6237 7.334921 CGTCCTGGTGTATTAATTTTCCTGTAA 59.665 37.037 0.00 0.00 0.00 2.41
5891 6238 9.016438 GTCCTGGTGTATTAATTTTCCTGTAAA 57.984 33.333 0.00 0.00 0.00 2.01
5892 6239 9.762381 TCCTGGTGTATTAATTTTCCTGTAAAT 57.238 29.630 0.00 0.00 0.00 1.40
5915 6262 9.614792 AAATTAGCATCTAAAATTACTCGACCT 57.385 29.630 0.00 0.00 0.00 3.85
5916 6263 8.594881 ATTAGCATCTAAAATTACTCGACCTG 57.405 34.615 0.00 0.00 0.00 4.00
5917 6264 5.360591 AGCATCTAAAATTACTCGACCTGG 58.639 41.667 0.00 0.00 0.00 4.45
5918 6265 5.104900 AGCATCTAAAATTACTCGACCTGGT 60.105 40.000 0.00 0.00 0.00 4.00
5919 6266 5.006746 GCATCTAAAATTACTCGACCTGGTG 59.993 44.000 2.82 0.00 0.00 4.17
5920 6267 5.988310 TCTAAAATTACTCGACCTGGTGA 57.012 39.130 2.82 1.18 0.00 4.02
5921 6268 6.349243 TCTAAAATTACTCGACCTGGTGAA 57.651 37.500 2.82 0.00 0.00 3.18
5922 6269 6.942976 TCTAAAATTACTCGACCTGGTGAAT 58.057 36.000 2.82 0.00 0.00 2.57
5923 6270 7.391620 TCTAAAATTACTCGACCTGGTGAATT 58.608 34.615 2.82 0.00 0.00 2.17
5924 6271 6.894339 AAAATTACTCGACCTGGTGAATTT 57.106 33.333 2.82 5.74 0.00 1.82
5925 6272 6.894339 AAATTACTCGACCTGGTGAATTTT 57.106 33.333 2.82 0.00 0.00 1.82
5926 6273 6.496338 AATTACTCGACCTGGTGAATTTTC 57.504 37.500 2.82 0.00 0.00 2.29
5927 6274 2.779506 ACTCGACCTGGTGAATTTTCC 58.220 47.619 2.82 0.00 0.00 3.13
5928 6275 2.372172 ACTCGACCTGGTGAATTTTCCT 59.628 45.455 2.82 0.00 0.00 3.36
5929 6276 2.744202 CTCGACCTGGTGAATTTTCCTG 59.256 50.000 2.82 2.02 0.00 3.86
5930 6277 2.105821 TCGACCTGGTGAATTTTCCTGT 59.894 45.455 2.82 0.52 0.00 4.00
5931 6278 3.325425 TCGACCTGGTGAATTTTCCTGTA 59.675 43.478 2.82 0.00 0.00 2.74
5932 6279 4.069304 CGACCTGGTGAATTTTCCTGTAA 58.931 43.478 2.82 0.00 0.00 2.41
5933 6280 4.517453 CGACCTGGTGAATTTTCCTGTAAA 59.483 41.667 2.82 0.00 0.00 2.01
5934 6281 5.183140 CGACCTGGTGAATTTTCCTGTAAAT 59.817 40.000 2.82 0.00 0.00 1.40
5935 6282 6.294508 CGACCTGGTGAATTTTCCTGTAAATT 60.295 38.462 2.82 0.00 39.68 1.82
5936 6283 7.094549 CGACCTGGTGAATTTTCCTGTAAATTA 60.095 37.037 2.82 0.00 37.72 1.40
5937 6284 8.122472 ACCTGGTGAATTTTCCTGTAAATTAG 57.878 34.615 0.00 0.00 37.72 1.73
5938 6285 7.035612 CCTGGTGAATTTTCCTGTAAATTAGC 58.964 38.462 0.00 0.00 37.72 3.09
5939 6286 7.309744 CCTGGTGAATTTTCCTGTAAATTAGCA 60.310 37.037 0.00 0.00 37.72 3.49
5940 6287 7.957002 TGGTGAATTTTCCTGTAAATTAGCAA 58.043 30.769 0.00 0.00 37.72 3.91
5941 6288 8.592809 TGGTGAATTTTCCTGTAAATTAGCAAT 58.407 29.630 0.00 0.00 37.72 3.56
5942 6289 9.087424 GGTGAATTTTCCTGTAAATTAGCAATC 57.913 33.333 0.00 0.00 37.72 2.67
5943 6290 9.860898 GTGAATTTTCCTGTAAATTAGCAATCT 57.139 29.630 0.00 0.00 37.72 2.40
5947 6294 9.875691 ATTTTCCTGTAAATTAGCAATCTTTCC 57.124 29.630 0.00 0.00 0.00 3.13
5948 6295 7.404671 TTCCTGTAAATTAGCAATCTTTCCC 57.595 36.000 0.00 0.00 0.00 3.97
5949 6296 6.731467 TCCTGTAAATTAGCAATCTTTCCCT 58.269 36.000 0.00 0.00 0.00 4.20
5950 6297 6.828785 TCCTGTAAATTAGCAATCTTTCCCTC 59.171 38.462 0.00 0.00 0.00 4.30
5951 6298 6.603201 CCTGTAAATTAGCAATCTTTCCCTCA 59.397 38.462 0.00 0.00 0.00 3.86
5952 6299 7.122650 CCTGTAAATTAGCAATCTTTCCCTCAA 59.877 37.037 0.00 0.00 0.00 3.02
5953 6300 8.593945 TGTAAATTAGCAATCTTTCCCTCAAT 57.406 30.769 0.00 0.00 0.00 2.57
5954 6301 8.686334 TGTAAATTAGCAATCTTTCCCTCAATC 58.314 33.333 0.00 0.00 0.00 2.67
5955 6302 7.722949 AAATTAGCAATCTTTCCCTCAATCA 57.277 32.000 0.00 0.00 0.00 2.57
5956 6303 7.909485 AATTAGCAATCTTTCCCTCAATCAT 57.091 32.000 0.00 0.00 0.00 2.45
5957 6304 6.949352 TTAGCAATCTTTCCCTCAATCATC 57.051 37.500 0.00 0.00 0.00 2.92
5958 6305 5.126699 AGCAATCTTTCCCTCAATCATCT 57.873 39.130 0.00 0.00 0.00 2.90
5959 6306 5.131784 AGCAATCTTTCCCTCAATCATCTC 58.868 41.667 0.00 0.00 0.00 2.75
5960 6307 4.885907 GCAATCTTTCCCTCAATCATCTCA 59.114 41.667 0.00 0.00 0.00 3.27
5961 6308 5.359009 GCAATCTTTCCCTCAATCATCTCAA 59.641 40.000 0.00 0.00 0.00 3.02
5962 6309 6.459848 GCAATCTTTCCCTCAATCATCTCAAG 60.460 42.308 0.00 0.00 0.00 3.02
5963 6310 5.768980 TCTTTCCCTCAATCATCTCAAGT 57.231 39.130 0.00 0.00 0.00 3.16
5964 6311 6.874278 TCTTTCCCTCAATCATCTCAAGTA 57.126 37.500 0.00 0.00 0.00 2.24
5965 6312 6.882656 TCTTTCCCTCAATCATCTCAAGTAG 58.117 40.000 0.00 0.00 0.00 2.57
5966 6313 6.441924 TCTTTCCCTCAATCATCTCAAGTAGT 59.558 38.462 0.00 0.00 0.00 2.73
5967 6314 7.619698 TCTTTCCCTCAATCATCTCAAGTAGTA 59.380 37.037 0.00 0.00 0.00 1.82
5968 6315 6.716934 TCCCTCAATCATCTCAAGTAGTAC 57.283 41.667 0.00 0.00 0.00 2.73
5969 6316 6.436027 TCCCTCAATCATCTCAAGTAGTACT 58.564 40.000 0.00 0.00 0.00 2.73
5970 6317 6.547880 TCCCTCAATCATCTCAAGTAGTACTC 59.452 42.308 2.58 0.00 0.00 2.59
5971 6318 6.239176 CCCTCAATCATCTCAAGTAGTACTCC 60.239 46.154 2.58 0.00 0.00 3.85
5972 6319 6.549364 CCTCAATCATCTCAAGTAGTACTCCT 59.451 42.308 2.58 0.00 0.00 3.69
5973 6320 7.069331 CCTCAATCATCTCAAGTAGTACTCCTT 59.931 40.741 2.58 0.00 0.00 3.36
5974 6321 8.367660 TCAATCATCTCAAGTAGTACTCCTTT 57.632 34.615 2.58 0.00 0.00 3.11
5975 6322 8.816894 TCAATCATCTCAAGTAGTACTCCTTTT 58.183 33.333 2.58 0.00 0.00 2.27
5976 6323 9.442047 CAATCATCTCAAGTAGTACTCCTTTTT 57.558 33.333 2.58 0.00 0.00 1.94
6006 6353 2.179949 GCTTTGGAGCGTATCTTTGC 57.820 50.000 0.00 0.00 39.48 3.68
6007 6354 1.468520 GCTTTGGAGCGTATCTTTGCA 59.531 47.619 0.00 0.00 39.48 4.08
6008 6355 2.098117 GCTTTGGAGCGTATCTTTGCAT 59.902 45.455 0.00 0.00 39.48 3.96
6009 6356 3.428045 GCTTTGGAGCGTATCTTTGCATT 60.428 43.478 0.00 0.00 39.48 3.56
6010 6357 3.763097 TTGGAGCGTATCTTTGCATTG 57.237 42.857 0.00 0.00 0.00 2.82
6011 6358 2.984562 TGGAGCGTATCTTTGCATTGA 58.015 42.857 0.00 0.00 0.00 2.57
6012 6359 3.544684 TGGAGCGTATCTTTGCATTGAT 58.455 40.909 7.07 7.07 0.00 2.57
6013 6360 4.702831 TGGAGCGTATCTTTGCATTGATA 58.297 39.130 5.41 5.41 0.00 2.15
6014 6361 4.751600 TGGAGCGTATCTTTGCATTGATAG 59.248 41.667 8.77 5.88 0.00 2.08
6015 6362 4.991056 GGAGCGTATCTTTGCATTGATAGA 59.009 41.667 8.77 0.00 0.00 1.98
6016 6363 5.119898 GGAGCGTATCTTTGCATTGATAGAG 59.880 44.000 8.77 7.84 0.00 2.43
6017 6364 4.993584 AGCGTATCTTTGCATTGATAGAGG 59.006 41.667 8.77 4.58 0.00 3.69
6018 6365 4.153117 GCGTATCTTTGCATTGATAGAGGG 59.847 45.833 8.77 2.81 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.727123 TCAACACCAAGAAAGCCAGA 57.273 45.000 0.00 0.00 0.00 3.86
2 3 5.183713 TGAATATCAACACCAAGAAAGCCAG 59.816 40.000 0.00 0.00 0.00 4.85
3 4 5.076182 TGAATATCAACACCAAGAAAGCCA 58.924 37.500 0.00 0.00 0.00 4.75
5 6 6.259550 ACTGAATATCAACACCAAGAAAGC 57.740 37.500 0.00 0.00 0.00 3.51
38 39 8.135529 CACTCACTAATAATACGATCTGGAACA 58.864 37.037 0.00 0.00 0.00 3.18
39 40 7.115095 GCACTCACTAATAATACGATCTGGAAC 59.885 40.741 0.00 0.00 0.00 3.62
40 41 7.145985 GCACTCACTAATAATACGATCTGGAA 58.854 38.462 0.00 0.00 0.00 3.53
41 42 6.264518 TGCACTCACTAATAATACGATCTGGA 59.735 38.462 0.00 0.00 0.00 3.86
42 43 6.447162 TGCACTCACTAATAATACGATCTGG 58.553 40.000 0.00 0.00 0.00 3.86
43 44 6.088749 GCTGCACTCACTAATAATACGATCTG 59.911 42.308 0.00 0.00 0.00 2.90
44 45 6.015856 AGCTGCACTCACTAATAATACGATCT 60.016 38.462 1.02 0.00 0.00 2.75
45 46 6.088749 CAGCTGCACTCACTAATAATACGATC 59.911 42.308 0.00 0.00 0.00 3.69
46 47 5.923114 CAGCTGCACTCACTAATAATACGAT 59.077 40.000 0.00 0.00 0.00 3.73
47 48 5.281727 CAGCTGCACTCACTAATAATACGA 58.718 41.667 0.00 0.00 0.00 3.43
48 49 4.445718 CCAGCTGCACTCACTAATAATACG 59.554 45.833 8.66 0.00 0.00 3.06
49 50 5.360591 ACCAGCTGCACTCACTAATAATAC 58.639 41.667 8.66 0.00 0.00 1.89
50 51 5.128663 TGACCAGCTGCACTCACTAATAATA 59.871 40.000 8.66 0.00 0.00 0.98
51 52 4.080919 TGACCAGCTGCACTCACTAATAAT 60.081 41.667 8.66 0.00 0.00 1.28
52 53 3.260632 TGACCAGCTGCACTCACTAATAA 59.739 43.478 8.66 0.00 0.00 1.40
53 54 2.831526 TGACCAGCTGCACTCACTAATA 59.168 45.455 8.66 0.00 0.00 0.98
54 55 1.625315 TGACCAGCTGCACTCACTAAT 59.375 47.619 8.66 0.00 0.00 1.73
55 56 1.047801 TGACCAGCTGCACTCACTAA 58.952 50.000 8.66 0.00 0.00 2.24
56 57 1.047801 TTGACCAGCTGCACTCACTA 58.952 50.000 8.66 0.00 0.00 2.74
57 58 0.181114 TTTGACCAGCTGCACTCACT 59.819 50.000 8.66 0.00 0.00 3.41
58 59 0.308993 GTTTGACCAGCTGCACTCAC 59.691 55.000 8.66 0.00 0.00 3.51
59 60 0.181114 AGTTTGACCAGCTGCACTCA 59.819 50.000 8.66 5.53 0.00 3.41
60 61 1.312815 AAGTTTGACCAGCTGCACTC 58.687 50.000 8.66 2.69 0.00 3.51
61 62 1.678101 GAAAGTTTGACCAGCTGCACT 59.322 47.619 8.66 1.60 0.00 4.40
62 63 1.678101 AGAAAGTTTGACCAGCTGCAC 59.322 47.619 8.66 4.75 0.00 4.57
63 64 2.057137 AGAAAGTTTGACCAGCTGCA 57.943 45.000 8.66 0.00 0.00 4.41
64 65 2.358898 TGAAGAAAGTTTGACCAGCTGC 59.641 45.455 8.66 0.00 0.00 5.25
65 66 3.629398 AGTGAAGAAAGTTTGACCAGCTG 59.371 43.478 6.78 6.78 0.00 4.24
66 67 3.629398 CAGTGAAGAAAGTTTGACCAGCT 59.371 43.478 0.00 0.00 0.00 4.24
67 68 3.243201 CCAGTGAAGAAAGTTTGACCAGC 60.243 47.826 0.00 0.00 0.00 4.85
68 69 3.947834 ACCAGTGAAGAAAGTTTGACCAG 59.052 43.478 0.00 0.00 0.00 4.00
69 70 3.694072 CACCAGTGAAGAAAGTTTGACCA 59.306 43.478 0.00 0.00 0.00 4.02
70 71 3.489229 GCACCAGTGAAGAAAGTTTGACC 60.489 47.826 0.99 0.00 0.00 4.02
71 72 3.128589 TGCACCAGTGAAGAAAGTTTGAC 59.871 43.478 0.99 0.00 0.00 3.18
72 73 3.351740 TGCACCAGTGAAGAAAGTTTGA 58.648 40.909 0.99 0.00 0.00 2.69
73 74 3.781079 TGCACCAGTGAAGAAAGTTTG 57.219 42.857 0.99 0.00 0.00 2.93
74 75 3.509575 TGTTGCACCAGTGAAGAAAGTTT 59.490 39.130 0.99 0.00 0.00 2.66
75 76 3.088532 TGTTGCACCAGTGAAGAAAGTT 58.911 40.909 0.99 0.00 0.00 2.66
76 77 2.722094 TGTTGCACCAGTGAAGAAAGT 58.278 42.857 0.99 0.00 0.00 2.66
77 78 3.567164 AGATGTTGCACCAGTGAAGAAAG 59.433 43.478 0.99 0.00 0.00 2.62
78 79 3.554934 AGATGTTGCACCAGTGAAGAAA 58.445 40.909 0.99 0.00 0.00 2.52
79 80 3.213206 AGATGTTGCACCAGTGAAGAA 57.787 42.857 0.99 0.00 0.00 2.52
80 81 2.936919 AGATGTTGCACCAGTGAAGA 57.063 45.000 0.99 0.00 0.00 2.87
81 82 5.181811 TCAAATAGATGTTGCACCAGTGAAG 59.818 40.000 0.99 0.00 0.00 3.02
82 83 5.069318 TCAAATAGATGTTGCACCAGTGAA 58.931 37.500 0.99 0.00 0.00 3.18
83 84 4.650734 TCAAATAGATGTTGCACCAGTGA 58.349 39.130 0.99 0.00 0.00 3.41
84 85 5.356190 AGATCAAATAGATGTTGCACCAGTG 59.644 40.000 0.00 0.00 37.00 3.66
126 127 1.768870 GCTCAAGGGCTATACTTCCCA 59.231 52.381 0.00 0.00 45.07 4.37
179 180 4.335416 TGGACATCAGAAACCTGAATTCC 58.665 43.478 2.27 14.16 43.22 3.01
188 189 6.506500 ACTGAATTCATGGACATCAGAAAC 57.493 37.500 20.40 0.00 39.85 2.78
200 201 9.107177 AGATACAAAGCTCTTACTGAATTCATG 57.893 33.333 8.96 6.02 0.00 3.07
278 281 3.069443 TGACCCAGCAAGAAAACATTTCC 59.931 43.478 0.00 0.00 0.00 3.13
321 337 4.580580 ACCTTTTGTTTCTGACCTGATGAC 59.419 41.667 0.00 0.00 0.00 3.06
352 368 1.741770 GTGACCCGCAAGCCTACAG 60.742 63.158 0.00 0.00 0.00 2.74
382 398 0.906282 CCTGGCCCCTGCAAAAATCT 60.906 55.000 0.00 0.00 40.13 2.40
414 430 5.587443 TGATTCTTACAACCATGCAGAGATG 59.413 40.000 0.00 0.00 0.00 2.90
483 501 3.591979 TGCCAAAGCATGAAGCAAC 57.408 47.368 0.00 0.00 46.52 4.17
612 630 1.014044 CCGAAGCTAGAAGCACGCAA 61.014 55.000 1.22 0.00 45.56 4.85
613 631 1.446099 CCGAAGCTAGAAGCACGCA 60.446 57.895 1.22 0.00 45.56 5.24
637 655 6.397272 TGGAAATATGCAACAATTCCAGTTC 58.603 36.000 17.55 2.76 43.33 3.01
643 661 9.807649 AGTAGAAATGGAAATATGCAACAATTC 57.192 29.630 0.00 0.00 0.00 2.17
691 709 5.185056 TCAACTTATGCTACACTGCTAGTCA 59.815 40.000 0.00 0.00 0.00 3.41
692 710 5.651530 TCAACTTATGCTACACTGCTAGTC 58.348 41.667 0.00 0.00 0.00 2.59
917 935 2.094854 CACTGAAGATTTCTTGCCAGCC 60.095 50.000 0.00 0.00 36.11 4.85
1022 1043 7.358352 GCCAAAGAAAAATCATGTACAAGAACG 60.358 37.037 4.69 0.00 0.00 3.95
1031 1052 7.472334 ACTCATAGCCAAAGAAAAATCATGT 57.528 32.000 0.00 0.00 0.00 3.21
1180 1202 3.892588 GACCACCATGTTTCTTTACCCAA 59.107 43.478 0.00 0.00 0.00 4.12
4047 4151 1.008079 GTGTGCTGGAACAAGCTGC 60.008 57.895 2.83 0.00 38.70 5.25
4048 4152 1.656441 GGTGTGCTGGAACAAGCTG 59.344 57.895 2.83 0.00 38.70 4.24
4442 4549 0.034337 TCTGAAAGTACCACCGGTGC 59.966 55.000 29.75 15.79 38.59 5.01
4630 4755 4.385310 GGTGGTCAGCTTTGGGAATAGTAT 60.385 45.833 0.00 0.00 0.00 2.12
4766 4893 2.282110 CATCGGTGCCCACAACCA 60.282 61.111 0.40 0.00 0.00 3.67
4775 4902 2.226674 TCGATCTCTATGTCATCGGTGC 59.773 50.000 0.00 0.00 39.90 5.01
4810 4937 1.450312 GGCCAACATCCACCTCGAG 60.450 63.158 5.13 5.13 0.00 4.04
4823 4950 3.897122 GGTCAGGGTGGTGGCCAA 61.897 66.667 7.24 0.00 42.29 4.52
4898 5025 2.485266 ATCATCAACGTGCATGCATG 57.515 45.000 33.18 33.18 38.78 4.06
4937 5064 3.436700 TGCGATGAGTGGTATAGTGTG 57.563 47.619 0.00 0.00 0.00 3.82
4942 5069 6.650427 AGTCTAAATGCGATGAGTGGTATA 57.350 37.500 0.00 0.00 0.00 1.47
4943 5070 5.537300 AGTCTAAATGCGATGAGTGGTAT 57.463 39.130 0.00 0.00 0.00 2.73
4951 5078 5.580691 TGAGTAACCAAGTCTAAATGCGATG 59.419 40.000 0.00 0.00 0.00 3.84
4979 5106 8.149973 AGTGTGTAAGACAATACAACGAAAAT 57.850 30.769 0.00 0.00 37.52 1.82
4989 5116 8.832521 CCTAAACAACAAGTGTGTAAGACAATA 58.167 33.333 0.00 0.00 40.60 1.90
4990 5117 7.338449 ACCTAAACAACAAGTGTGTAAGACAAT 59.662 33.333 0.00 0.00 40.60 2.71
4998 5126 6.377146 AGAATTCACCTAAACAACAAGTGTGT 59.623 34.615 8.44 0.00 40.60 3.72
5058 5186 1.098050 GAGCACAACCATCCATCCAC 58.902 55.000 0.00 0.00 0.00 4.02
5116 5244 2.507110 ATCCACGGGAGCACACGAAG 62.507 60.000 14.16 4.36 46.86 3.79
5150 5278 0.250338 GAACAGCCGGTCAAGAACCT 60.250 55.000 1.90 0.00 46.87 3.50
5159 5287 0.968405 ATTTGCATTGAACAGCCGGT 59.032 45.000 1.90 0.00 0.00 5.28
5161 5289 3.117794 CCATATTTGCATTGAACAGCCG 58.882 45.455 0.00 0.00 0.00 5.52
5178 5306 3.010584 AGGCTGAAGCTTTTCCTTCCATA 59.989 43.478 0.00 0.00 40.34 2.74
5225 5353 0.984995 AAGCAGTAACAGGGGGTCTC 59.015 55.000 0.00 0.00 0.00 3.36
5229 5357 1.613437 CACAAAAGCAGTAACAGGGGG 59.387 52.381 0.00 0.00 0.00 5.40
5255 5387 1.002366 GCTCACGCCTATCACAACAG 58.998 55.000 0.00 0.00 0.00 3.16
5263 5395 1.453155 CACCAAAAGCTCACGCCTAT 58.547 50.000 0.00 0.00 36.60 2.57
5291 5423 2.859165 TTCCAGAGCCACAAAGGTAG 57.141 50.000 0.00 0.00 40.61 3.18
5292 5424 4.534500 TCTTATTCCAGAGCCACAAAGGTA 59.466 41.667 0.00 0.00 40.61 3.08
5293 5425 3.330701 TCTTATTCCAGAGCCACAAAGGT 59.669 43.478 0.00 0.00 40.61 3.50
5323 5455 2.954316 TGTAGACACAAGCACATACCG 58.046 47.619 0.00 0.00 0.00 4.02
5348 5480 2.438254 GCACATCGGCATGGTCCA 60.438 61.111 0.00 0.00 33.82 4.02
5349 5481 3.576356 CGCACATCGGCATGGTCC 61.576 66.667 0.00 0.00 33.82 4.46
5365 5497 1.789078 AACTCAGCAGCAAAGCCACG 61.789 55.000 0.00 0.00 34.23 4.94
5406 5557 2.551006 AATCCACACAAGCGCGCAA 61.551 52.632 35.10 7.86 0.00 4.85
5410 5561 1.130955 CAAACAATCCACACAAGCGC 58.869 50.000 0.00 0.00 0.00 5.92
5411 5562 2.772568 TCAAACAATCCACACAAGCG 57.227 45.000 0.00 0.00 0.00 4.68
5445 5601 3.099905 AGATACAGTACAGGCTGCTCAA 58.900 45.455 15.89 0.00 39.96 3.02
5447 5603 4.279671 ACATAGATACAGTACAGGCTGCTC 59.720 45.833 15.89 7.94 39.96 4.26
5456 5616 4.202161 ACTGCAGCCACATAGATACAGTAC 60.202 45.833 15.27 0.00 35.49 2.73
5536 5699 4.081031 ACACACAGATGCTTCTCAGATCAT 60.081 41.667 0.00 0.00 0.00 2.45
5540 5703 2.869237 GCACACACAGATGCTTCTCAGA 60.869 50.000 0.00 0.00 38.84 3.27
5565 5732 7.744087 AGCTCATATTTAACAAACACACAGA 57.256 32.000 0.00 0.00 0.00 3.41
5591 5758 7.712639 TCATAATCACAGGTAGCTCTTGATTTC 59.287 37.037 23.62 0.00 37.86 2.17
5596 5763 6.344500 ACTTCATAATCACAGGTAGCTCTTG 58.656 40.000 0.00 0.00 0.00 3.02
5597 5764 6.552445 ACTTCATAATCACAGGTAGCTCTT 57.448 37.500 0.00 0.00 0.00 2.85
5599 5766 5.525378 CCAACTTCATAATCACAGGTAGCTC 59.475 44.000 0.00 0.00 0.00 4.09
5614 5944 6.817765 AACAAATATCACGACCAACTTCAT 57.182 33.333 0.00 0.00 0.00 2.57
5627 5957 6.589523 GCTTTGCAACCACATAACAAATATCA 59.410 34.615 0.00 0.00 30.52 2.15
5630 5960 5.847304 TGCTTTGCAACCACATAACAAATA 58.153 33.333 0.00 0.00 34.76 1.40
5681 6011 2.681848 CAGCTACATTTCAAGAGCCTGG 59.318 50.000 0.00 0.00 35.45 4.45
5683 6013 2.363683 GCAGCTACATTTCAAGAGCCT 58.636 47.619 0.00 0.00 35.45 4.58
5685 6015 2.354199 GAGGCAGCTACATTTCAAGAGC 59.646 50.000 0.00 0.00 35.07 4.09
5739 6076 9.326413 GCCTGTAAATTAGCTCTGATTAAACTA 57.674 33.333 0.00 0.00 0.00 2.24
5773 6120 1.094650 TGCTGCAAACTTGAGCGACA 61.095 50.000 0.00 0.00 35.52 4.35
5799 6146 4.164843 ACAATGTTGTACTGACTGGGTT 57.835 40.909 0.00 0.00 40.16 4.11
5800 6147 3.857157 ACAATGTTGTACTGACTGGGT 57.143 42.857 0.00 0.00 40.16 4.51
5801 6148 4.133820 TGAACAATGTTGTACTGACTGGG 58.866 43.478 2.20 0.00 41.31 4.45
5802 6149 4.214119 CCTGAACAATGTTGTACTGACTGG 59.786 45.833 2.20 0.00 41.31 4.00
5803 6150 4.816385 ACCTGAACAATGTTGTACTGACTG 59.184 41.667 2.20 0.00 41.31 3.51
5804 6151 5.036117 ACCTGAACAATGTTGTACTGACT 57.964 39.130 2.20 0.00 41.31 3.41
5805 6152 5.295787 TGAACCTGAACAATGTTGTACTGAC 59.704 40.000 2.20 0.00 41.31 3.51
5806 6153 5.432645 TGAACCTGAACAATGTTGTACTGA 58.567 37.500 2.20 0.00 41.31 3.41
5807 6154 5.277974 CCTGAACCTGAACAATGTTGTACTG 60.278 44.000 2.20 0.00 41.31 2.74
5808 6155 4.821805 CCTGAACCTGAACAATGTTGTACT 59.178 41.667 2.20 0.00 41.31 2.73
5809 6156 4.819630 TCCTGAACCTGAACAATGTTGTAC 59.180 41.667 2.20 0.00 41.31 2.90
5810 6157 4.819630 GTCCTGAACCTGAACAATGTTGTA 59.180 41.667 2.20 0.00 41.31 2.41
5811 6158 3.632145 GTCCTGAACCTGAACAATGTTGT 59.368 43.478 2.20 0.00 44.72 3.32
5812 6159 3.303990 CGTCCTGAACCTGAACAATGTTG 60.304 47.826 2.20 0.00 0.00 3.33
5813 6160 2.878406 CGTCCTGAACCTGAACAATGTT 59.122 45.455 0.00 0.00 0.00 2.71
5814 6161 2.494059 CGTCCTGAACCTGAACAATGT 58.506 47.619 0.00 0.00 0.00 2.71
5815 6162 1.197721 GCGTCCTGAACCTGAACAATG 59.802 52.381 0.00 0.00 0.00 2.82
5816 6163 1.072331 AGCGTCCTGAACCTGAACAAT 59.928 47.619 0.00 0.00 0.00 2.71
5817 6164 0.468226 AGCGTCCTGAACCTGAACAA 59.532 50.000 0.00 0.00 0.00 2.83
5818 6165 0.249868 CAGCGTCCTGAACCTGAACA 60.250 55.000 0.00 0.00 41.77 3.18
5819 6166 0.249911 ACAGCGTCCTGAACCTGAAC 60.250 55.000 0.00 0.00 41.77 3.18
5820 6167 0.033504 GACAGCGTCCTGAACCTGAA 59.966 55.000 0.00 0.00 41.77 3.02
5821 6168 1.112916 TGACAGCGTCCTGAACCTGA 61.113 55.000 6.30 0.00 41.77 3.86
5822 6169 0.249868 TTGACAGCGTCCTGAACCTG 60.250 55.000 6.30 0.00 41.77 4.00
5823 6170 0.034059 CTTGACAGCGTCCTGAACCT 59.966 55.000 6.30 0.00 41.77 3.50
5824 6171 1.569479 GCTTGACAGCGTCCTGAACC 61.569 60.000 6.30 0.00 41.77 3.62
5825 6172 1.862806 GCTTGACAGCGTCCTGAAC 59.137 57.895 6.30 0.00 41.77 3.18
5826 6173 4.361253 GCTTGACAGCGTCCTGAA 57.639 55.556 6.30 0.00 41.77 3.02
5835 6182 2.129823 CTTGTTGCCAAGCTTGACAG 57.870 50.000 28.05 12.24 41.51 3.51
5847 6194 1.727335 GACGAGTAAGAGGCTTGTTGC 59.273 52.381 0.00 0.00 41.94 4.17
5848 6195 2.028930 AGGACGAGTAAGAGGCTTGTTG 60.029 50.000 0.00 0.00 31.22 3.33
5849 6196 2.028930 CAGGACGAGTAAGAGGCTTGTT 60.029 50.000 0.00 0.00 31.22 2.83
5850 6197 1.546476 CAGGACGAGTAAGAGGCTTGT 59.454 52.381 0.00 0.00 33.57 3.16
5851 6198 1.134965 CCAGGACGAGTAAGAGGCTTG 60.135 57.143 0.00 0.00 0.00 4.01
5852 6199 1.187087 CCAGGACGAGTAAGAGGCTT 58.813 55.000 0.00 0.00 0.00 4.35
5853 6200 0.039911 ACCAGGACGAGTAAGAGGCT 59.960 55.000 0.00 0.00 0.00 4.58
5854 6201 0.173708 CACCAGGACGAGTAAGAGGC 59.826 60.000 0.00 0.00 0.00 4.70
5855 6202 1.546961 ACACCAGGACGAGTAAGAGG 58.453 55.000 0.00 0.00 0.00 3.69
5856 6203 4.985538 AATACACCAGGACGAGTAAGAG 57.014 45.455 0.00 0.00 0.00 2.85
5857 6204 7.414222 AATTAATACACCAGGACGAGTAAGA 57.586 36.000 0.00 0.00 0.00 2.10
5858 6205 8.488651 AAAATTAATACACCAGGACGAGTAAG 57.511 34.615 0.00 0.00 0.00 2.34
5859 6206 7.550196 GGAAAATTAATACACCAGGACGAGTAA 59.450 37.037 0.00 0.00 0.00 2.24
5860 6207 7.043565 GGAAAATTAATACACCAGGACGAGTA 58.956 38.462 0.00 0.00 0.00 2.59
5861 6208 5.878669 GGAAAATTAATACACCAGGACGAGT 59.121 40.000 0.00 0.00 0.00 4.18
5862 6209 6.037172 CAGGAAAATTAATACACCAGGACGAG 59.963 42.308 0.00 0.00 0.00 4.18
5863 6210 5.878116 CAGGAAAATTAATACACCAGGACGA 59.122 40.000 0.00 0.00 0.00 4.20
5864 6211 5.646360 ACAGGAAAATTAATACACCAGGACG 59.354 40.000 0.00 0.00 0.00 4.79
5865 6212 8.570068 TTACAGGAAAATTAATACACCAGGAC 57.430 34.615 0.00 0.00 0.00 3.85
5866 6213 9.762381 ATTTACAGGAAAATTAATACACCAGGA 57.238 29.630 0.00 0.00 0.00 3.86
5889 6236 9.614792 AGGTCGAGTAATTTTAGATGCTAATTT 57.385 29.630 0.00 0.00 0.00 1.82
5890 6237 9.046296 CAGGTCGAGTAATTTTAGATGCTAATT 57.954 33.333 0.00 0.00 0.00 1.40
5891 6238 7.657761 CCAGGTCGAGTAATTTTAGATGCTAAT 59.342 37.037 0.00 0.00 0.00 1.73
5892 6239 6.984474 CCAGGTCGAGTAATTTTAGATGCTAA 59.016 38.462 0.00 0.00 0.00 3.09
5893 6240 6.097839 ACCAGGTCGAGTAATTTTAGATGCTA 59.902 38.462 0.00 0.00 0.00 3.49
5894 6241 5.104900 ACCAGGTCGAGTAATTTTAGATGCT 60.105 40.000 0.00 0.00 0.00 3.79
5895 6242 5.006746 CACCAGGTCGAGTAATTTTAGATGC 59.993 44.000 0.00 0.00 0.00 3.91
5896 6243 6.338146 TCACCAGGTCGAGTAATTTTAGATG 58.662 40.000 0.00 0.00 0.00 2.90
5897 6244 6.540438 TCACCAGGTCGAGTAATTTTAGAT 57.460 37.500 0.00 0.00 0.00 1.98
5898 6245 5.988310 TCACCAGGTCGAGTAATTTTAGA 57.012 39.130 0.00 0.00 0.00 2.10
5899 6246 7.611213 AATTCACCAGGTCGAGTAATTTTAG 57.389 36.000 0.00 0.00 0.00 1.85
5900 6247 7.989416 AAATTCACCAGGTCGAGTAATTTTA 57.011 32.000 0.00 0.00 0.00 1.52
5901 6248 6.894339 AAATTCACCAGGTCGAGTAATTTT 57.106 33.333 0.00 0.00 0.00 1.82
5902 6249 6.072119 GGAAAATTCACCAGGTCGAGTAATTT 60.072 38.462 0.00 0.00 0.00 1.82
5903 6250 5.414765 GGAAAATTCACCAGGTCGAGTAATT 59.585 40.000 0.00 0.00 0.00 1.40
5904 6251 4.941873 GGAAAATTCACCAGGTCGAGTAAT 59.058 41.667 0.00 0.00 0.00 1.89
5905 6252 4.041198 AGGAAAATTCACCAGGTCGAGTAA 59.959 41.667 0.00 0.00 0.00 2.24
5906 6253 3.581332 AGGAAAATTCACCAGGTCGAGTA 59.419 43.478 0.00 0.00 0.00 2.59
5907 6254 2.372172 AGGAAAATTCACCAGGTCGAGT 59.628 45.455 0.00 0.00 0.00 4.18
5908 6255 2.744202 CAGGAAAATTCACCAGGTCGAG 59.256 50.000 0.00 0.00 0.00 4.04
5909 6256 2.105821 ACAGGAAAATTCACCAGGTCGA 59.894 45.455 0.00 0.00 0.00 4.20
5910 6257 2.504367 ACAGGAAAATTCACCAGGTCG 58.496 47.619 0.00 0.00 0.00 4.79
5911 6258 6.590234 ATTTACAGGAAAATTCACCAGGTC 57.410 37.500 0.00 0.00 0.00 3.85
5912 6259 6.994421 AATTTACAGGAAAATTCACCAGGT 57.006 33.333 0.00 0.00 34.71 4.00
5913 6260 7.035612 GCTAATTTACAGGAAAATTCACCAGG 58.964 38.462 0.00 0.00 39.27 4.45
5914 6261 7.601856 TGCTAATTTACAGGAAAATTCACCAG 58.398 34.615 0.00 0.00 39.27 4.00
5915 6262 7.531857 TGCTAATTTACAGGAAAATTCACCA 57.468 32.000 0.00 0.00 39.27 4.17
5916 6263 9.087424 GATTGCTAATTTACAGGAAAATTCACC 57.913 33.333 0.00 0.00 39.27 4.02
5917 6264 9.860898 AGATTGCTAATTTACAGGAAAATTCAC 57.139 29.630 0.00 0.00 39.27 3.18
5921 6268 9.875691 GGAAAGATTGCTAATTTACAGGAAAAT 57.124 29.630 0.00 0.00 0.00 1.82
5922 6269 8.311109 GGGAAAGATTGCTAATTTACAGGAAAA 58.689 33.333 0.00 0.00 0.00 2.29
5923 6270 7.673926 AGGGAAAGATTGCTAATTTACAGGAAA 59.326 33.333 0.00 0.00 0.00 3.13
5924 6271 7.182060 AGGGAAAGATTGCTAATTTACAGGAA 58.818 34.615 0.00 0.00 0.00 3.36
5925 6272 6.731467 AGGGAAAGATTGCTAATTTACAGGA 58.269 36.000 0.00 0.00 0.00 3.86
5926 6273 6.603201 TGAGGGAAAGATTGCTAATTTACAGG 59.397 38.462 0.00 0.00 0.00 4.00
5927 6274 7.630242 TGAGGGAAAGATTGCTAATTTACAG 57.370 36.000 0.00 0.00 0.00 2.74
5928 6275 8.593945 ATTGAGGGAAAGATTGCTAATTTACA 57.406 30.769 0.00 0.00 0.00 2.41
5929 6276 8.686334 TGATTGAGGGAAAGATTGCTAATTTAC 58.314 33.333 0.00 0.00 0.00 2.01
5930 6277 8.821686 TGATTGAGGGAAAGATTGCTAATTTA 57.178 30.769 0.00 0.00 0.00 1.40
5931 6278 7.722949 TGATTGAGGGAAAGATTGCTAATTT 57.277 32.000 0.00 0.00 0.00 1.82
5932 6279 7.783596 AGATGATTGAGGGAAAGATTGCTAATT 59.216 33.333 0.00 0.00 0.00 1.40
5933 6280 7.296098 AGATGATTGAGGGAAAGATTGCTAAT 58.704 34.615 0.00 0.00 0.00 1.73
5934 6281 6.666678 AGATGATTGAGGGAAAGATTGCTAA 58.333 36.000 0.00 0.00 0.00 3.09
5935 6282 6.126681 TGAGATGATTGAGGGAAAGATTGCTA 60.127 38.462 0.00 0.00 0.00 3.49
5936 6283 5.126699 AGATGATTGAGGGAAAGATTGCT 57.873 39.130 0.00 0.00 0.00 3.91
5937 6284 4.885907 TGAGATGATTGAGGGAAAGATTGC 59.114 41.667 0.00 0.00 0.00 3.56
5938 6285 6.602406 ACTTGAGATGATTGAGGGAAAGATTG 59.398 38.462 0.00 0.00 0.00 2.67
5939 6286 6.729428 ACTTGAGATGATTGAGGGAAAGATT 58.271 36.000 0.00 0.00 0.00 2.40
5940 6287 6.324601 ACTTGAGATGATTGAGGGAAAGAT 57.675 37.500 0.00 0.00 0.00 2.40
5941 6288 5.768980 ACTTGAGATGATTGAGGGAAAGA 57.231 39.130 0.00 0.00 0.00 2.52
5942 6289 6.648192 ACTACTTGAGATGATTGAGGGAAAG 58.352 40.000 0.00 0.00 0.00 2.62
5943 6290 6.627087 ACTACTTGAGATGATTGAGGGAAA 57.373 37.500 0.00 0.00 0.00 3.13
5944 6291 6.897966 AGTACTACTTGAGATGATTGAGGGAA 59.102 38.462 0.00 0.00 0.00 3.97
5945 6292 6.436027 AGTACTACTTGAGATGATTGAGGGA 58.564 40.000 0.00 0.00 0.00 4.20
5946 6293 6.239176 GGAGTACTACTTGAGATGATTGAGGG 60.239 46.154 0.00 0.00 0.00 4.30
5947 6294 6.549364 AGGAGTACTACTTGAGATGATTGAGG 59.451 42.308 0.17 0.00 0.00 3.86
5948 6295 7.581213 AGGAGTACTACTTGAGATGATTGAG 57.419 40.000 0.17 0.00 0.00 3.02
5949 6296 7.962995 AAGGAGTACTACTTGAGATGATTGA 57.037 36.000 19.94 0.00 31.24 2.57
5950 6297 9.442047 AAAAAGGAGTACTACTTGAGATGATTG 57.558 33.333 21.26 0.00 33.17 2.67
5987 6334 1.468520 TGCAAAGATACGCTCCAAAGC 59.531 47.619 0.00 0.00 45.56 3.51
5988 6335 4.100529 CAATGCAAAGATACGCTCCAAAG 58.899 43.478 0.00 0.00 0.00 2.77
5989 6336 3.755905 TCAATGCAAAGATACGCTCCAAA 59.244 39.130 0.00 0.00 0.00 3.28
5990 6337 3.342719 TCAATGCAAAGATACGCTCCAA 58.657 40.909 0.00 0.00 0.00 3.53
5991 6338 2.984562 TCAATGCAAAGATACGCTCCA 58.015 42.857 0.00 0.00 0.00 3.86
5992 6339 4.991056 TCTATCAATGCAAAGATACGCTCC 59.009 41.667 7.22 0.00 0.00 4.70
5993 6340 5.119898 CCTCTATCAATGCAAAGATACGCTC 59.880 44.000 7.22 0.00 0.00 5.03
5994 6341 4.993584 CCTCTATCAATGCAAAGATACGCT 59.006 41.667 7.22 0.00 0.00 5.07
5995 6342 4.153117 CCCTCTATCAATGCAAAGATACGC 59.847 45.833 7.22 0.00 0.00 4.42
5996 6343 5.852738 CCCTCTATCAATGCAAAGATACG 57.147 43.478 7.22 5.25 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.