Multiple sequence alignment - TraesCS6D01G377400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G377400 chr6D 100.000 6683 0 0 1 6683 460103430 460096748 0.000000e+00 12342.0
1 TraesCS6D01G377400 chr6B 95.518 6426 245 21 1 6401 700107001 700100594 0.000000e+00 10231.0
2 TraesCS6D01G377400 chr6B 92.742 124 3 5 6398 6515 700100361 700100238 2.480000e-39 174.0
3 TraesCS6D01G377400 chr6A 79.491 707 112 15 4087 4788 606045073 606044395 7.840000e-129 472.0
4 TraesCS6D01G377400 chr6A 90.476 147 14 0 6516 6662 586916234 586916380 1.900000e-45 195.0
5 TraesCS6D01G377400 chr6A 87.879 165 18 2 6500 6662 2174799 2174963 6.840000e-45 193.0
6 TraesCS6D01G377400 chr3B 78.199 422 74 12 1046 1464 765314779 765315185 3.090000e-63 254.0
7 TraesCS6D01G377400 chr3B 90.476 147 14 0 6516 6662 822830878 822831024 1.900000e-45 195.0
8 TraesCS6D01G377400 chr3B 90.476 147 14 0 6516 6662 824369871 824370017 1.900000e-45 195.0
9 TraesCS6D01G377400 chr3B 88.535 157 17 1 6507 6662 335120206 335120362 8.850000e-44 189.0
10 TraesCS6D01G377400 chr3A 75.000 576 120 21 4041 4609 720677861 720678419 1.860000e-60 244.0
11 TraesCS6D01G377400 chr4B 91.156 147 13 0 6516 6662 73608403 73608257 4.090000e-47 200.0
12 TraesCS6D01G377400 chr5D 91.034 145 13 0 6516 6660 184045351 184045207 5.290000e-46 196.0
13 TraesCS6D01G377400 chr7B 90.476 147 14 0 6516 6662 560540257 560540403 1.900000e-45 195.0
14 TraesCS6D01G377400 chr2B 88.344 163 17 2 6501 6662 704875058 704875219 1.900000e-45 195.0
15 TraesCS6D01G377400 chr2B 75.735 408 78 17 1058 1456 784686149 784686544 1.140000e-42 185.0
16 TraesCS6D01G377400 chr2B 75.069 361 70 16 1110 1458 784662357 784662709 4.170000e-32 150.0
17 TraesCS6D01G377400 chr2B 74.013 304 68 9 1109 1408 784703518 784703814 5.480000e-21 113.0
18 TraesCS6D01G377400 chr2B 86.207 87 12 0 1103 1189 18168477 18168563 1.980000e-15 95.3
19 TraesCS6D01G377400 chr2D 76.860 363 64 16 1109 1458 648549636 648549281 3.180000e-43 187.0
20 TraesCS6D01G377400 chr2D 73.529 408 90 15 1058 1456 648576642 648577040 9.040000e-29 139.0
21 TraesCS6D01G377400 chr7A 75.419 179 38 5 1113 1288 708505307 708505132 1.540000e-11 82.4
22 TraesCS6D01G377400 chr4A 82.192 73 13 0 1111 1183 18005577 18005649 5.590000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G377400 chr6D 460096748 460103430 6682 True 12342.0 12342 100.000 1 6683 1 chr6D.!!$R1 6682
1 TraesCS6D01G377400 chr6B 700100238 700107001 6763 True 5202.5 10231 94.130 1 6515 2 chr6B.!!$R1 6514
2 TraesCS6D01G377400 chr6A 606044395 606045073 678 True 472.0 472 79.491 4087 4788 1 chr6A.!!$R1 701
3 TraesCS6D01G377400 chr3A 720677861 720678419 558 False 244.0 244 75.000 4041 4609 1 chr3A.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 458 0.110486 TTCTGACTGGGGCAAAGGAC 59.890 55.0 0.00 0.00 0.00 3.85 F
1305 1318 0.319297 GACCGTTACGTGCAGACCTT 60.319 55.0 3.52 0.00 0.00 3.50 F
1945 1961 0.179000 AGTTCCGTCAGATGCCCATC 59.821 55.0 0.00 0.00 38.09 3.51 F
2640 2659 0.327964 AATGGGGAGGAAGGAGAGGG 60.328 60.0 0.00 0.00 0.00 4.30 F
2992 3014 0.534427 ATGACCATCCTGATGCAGCG 60.534 55.0 0.00 0.00 37.49 5.18 F
3787 3809 0.179181 CATTCAATGCGCTCGTTGCT 60.179 50.0 9.73 0.07 38.71 3.91 F
5164 5201 0.261696 ATCCAATACCCAAGGCCACC 59.738 55.0 5.01 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 1915 0.103390 TATGGCCATGTCGTACCACG 59.897 55.000 29.04 0.0 44.19 4.94 R
2845 2867 0.035056 AAACTCCCTTCAGCCATCGG 60.035 55.000 0.00 0.0 0.00 4.18 R
3040 3062 0.107459 ATTGAAGCCTCTCCTTCCGC 60.107 55.000 0.00 0.0 40.34 5.54 R
3744 3766 1.306148 CTCAGCGTGATCCAATGCAT 58.694 50.000 0.00 0.0 0.00 3.96 R
3967 3989 1.948144 GCTTGTCTCTTCTTGGGGAGC 60.948 57.143 0.00 0.0 0.00 4.70 R
5372 5409 0.179048 TCACACACAGCCAACTCCTG 60.179 55.000 0.00 0.0 36.41 3.86 R
6134 6172 0.762418 ATATGAACGGCGGATTGGGA 59.238 50.000 13.24 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 113 4.093850 CCCAAATACTGTACAAACGTAGGC 59.906 45.833 0.00 0.00 0.00 3.93
239 242 2.017049 CTTTTCCAACCCATAGGCTCG 58.983 52.381 0.00 0.00 36.11 5.03
283 286 3.055385 GCCATATAAGTATTCCTCCCGCA 60.055 47.826 0.00 0.00 0.00 5.69
288 291 2.332063 AGTATTCCTCCCGCAATGTG 57.668 50.000 0.00 0.00 0.00 3.21
289 292 1.134098 AGTATTCCTCCCGCAATGTGG 60.134 52.381 5.73 5.73 0.00 4.17
294 297 1.750018 CTCCCGCAATGTGGATGCA 60.750 57.895 15.40 0.00 44.01 3.96
302 305 3.065786 CGCAATGTGGATGCAGATAAACT 59.934 43.478 0.00 0.00 44.01 2.66
303 306 4.439153 CGCAATGTGGATGCAGATAAACTT 60.439 41.667 0.00 0.00 44.01 2.66
411 414 8.031864 TCATGTCTTGTGCTTTGAGTTTTTAAA 58.968 29.630 0.00 0.00 0.00 1.52
442 445 3.949754 TCTTGATCATGGCCATTTCTGAC 59.050 43.478 17.92 7.50 0.00 3.51
455 458 0.110486 TTCTGACTGGGGCAAAGGAC 59.890 55.000 0.00 0.00 0.00 3.85
511 514 7.310671 GGAGCCCATATGAGATTCACAGTAATA 60.311 40.741 3.65 0.00 0.00 0.98
577 583 1.431243 ACTATGTTTTCTTGGGGGCCA 59.569 47.619 4.39 0.00 0.00 5.36
583 589 1.584724 TTTCTTGGGGGCCAAAAACA 58.415 45.000 4.39 0.00 43.44 2.83
585 591 0.325671 TCTTGGGGGCCAAAAACACA 60.326 50.000 4.39 0.00 43.44 3.72
659 665 6.877611 AAAAGCTACCAAAAAGAAGATCGA 57.122 33.333 0.00 0.00 0.00 3.59
740 746 7.542130 TCATGCTACATAAAGCGTACATCATAG 59.458 37.037 0.00 0.00 45.85 2.23
867 873 4.606961 TCGCAAGTTTGGAACAGAATTTC 58.393 39.130 0.00 0.00 38.28 2.17
976 987 3.495100 CCCATAGCCTCATCGCTTAGTTT 60.495 47.826 0.00 0.00 40.39 2.66
985 996 4.491676 TCATCGCTTAGTTTGTCACTACC 58.508 43.478 0.00 0.00 37.74 3.18
1026 1037 9.319143 CAACTATACTATTCCAAACAAGAGAGG 57.681 37.037 0.00 0.00 0.00 3.69
1027 1038 8.840200 ACTATACTATTCCAAACAAGAGAGGA 57.160 34.615 0.00 0.00 0.00 3.71
1029 1040 5.428184 ACTATTCCAAACAAGAGAGGAGG 57.572 43.478 0.00 0.00 0.00 4.30
1030 1041 5.094387 ACTATTCCAAACAAGAGAGGAGGA 58.906 41.667 0.00 0.00 0.00 3.71
1034 1045 4.171234 TCCAAACAAGAGAGGAGGAGAAT 58.829 43.478 0.00 0.00 0.00 2.40
1111 1124 2.279502 TAGCCACGGTCATCAGCGAC 62.280 60.000 0.00 0.00 46.86 5.19
1180 1193 2.036992 GGACGAGATGGAGAGCATGAAT 59.963 50.000 0.00 0.00 0.00 2.57
1196 1209 2.176045 TGAATGGCTTCCTACTCGACA 58.824 47.619 0.00 0.00 0.00 4.35
1282 1295 1.546961 CCTACGACTCCCAGAACTGT 58.453 55.000 0.00 0.00 0.00 3.55
1285 1298 3.315749 CCTACGACTCCCAGAACTGTATC 59.684 52.174 0.00 0.00 0.00 2.24
1291 1304 0.815734 CCCAGAACTGTATCGACCGT 59.184 55.000 0.00 0.00 0.00 4.83
1305 1318 0.319297 GACCGTTACGTGCAGACCTT 60.319 55.000 3.52 0.00 0.00 3.50
1347 1360 2.125673 CCTCCTTGGCACCGTACG 60.126 66.667 8.69 8.69 0.00 3.67
1460 1473 4.175337 GGCGGCAGAGGTATGGCA 62.175 66.667 3.07 0.00 45.57 4.92
1466 1479 0.882042 GCAGAGGTATGGCATCACGG 60.882 60.000 1.65 0.00 0.00 4.94
1489 1502 2.738521 CCGGACAAGTCACCAGCG 60.739 66.667 0.00 0.00 0.00 5.18
1494 1507 1.004277 GACAAGTCACCAGCGACTCG 61.004 60.000 0.00 0.00 45.56 4.18
1519 1532 1.450312 CACCGGAGAAGATGGTGCC 60.450 63.158 9.46 0.00 45.85 5.01
1550 1563 5.404466 AGATAATCAGAGGCATACTGCTC 57.596 43.478 0.00 0.00 44.28 4.26
1564 1577 5.722263 CATACTGCTCTAGCTGATATTGCT 58.278 41.667 14.79 8.78 41.71 3.91
1577 1590 5.614308 CTGATATTGCTGACCTATTGGACA 58.386 41.667 0.00 0.00 36.63 4.02
1614 1627 1.179152 CAGGTGATTGCATGGCTGAA 58.821 50.000 0.00 0.00 0.00 3.02
1619 1632 1.820519 TGATTGCATGGCTGAAAGGAC 59.179 47.619 0.00 0.00 0.00 3.85
1631 1644 3.760684 GCTGAAAGGACAAGGTGATCATT 59.239 43.478 0.00 0.00 0.00 2.57
1654 1667 1.958288 AGTCCAGTAGCCTTGGTGAT 58.042 50.000 0.00 0.00 37.02 3.06
1657 1670 4.816126 AGTCCAGTAGCCTTGGTGATATA 58.184 43.478 0.00 0.00 37.02 0.86
1666 1679 4.164988 AGCCTTGGTGATATATGGATAGCC 59.835 45.833 0.00 0.00 0.00 3.93
1699 1712 3.865446 TGATGAACTAGTGGTGCAGATG 58.135 45.455 0.00 0.00 36.83 2.90
1706 1719 0.959372 AGTGGTGCAGATGCTCAAGC 60.959 55.000 6.35 0.00 42.66 4.01
1708 1721 0.958876 TGGTGCAGATGCTCAAGCTG 60.959 55.000 6.35 0.00 42.66 4.24
1725 1738 3.108376 AGCTGGGAAAGGGACTAGTAAG 58.892 50.000 0.00 0.00 38.49 2.34
1752 1765 8.579006 AGAGAAAGATCTACTGAGCATGATAAG 58.421 37.037 0.00 0.00 35.54 1.73
1835 1851 3.181483 GCAGACAAATGAGGCCATAAAGG 60.181 47.826 5.01 0.00 41.84 3.11
1854 1870 0.608640 GTGGTGGACAAGGACGAGAT 59.391 55.000 0.00 0.00 0.00 2.75
1886 1902 2.818432 ACAATGCAGAAGCTCAAGGAAG 59.182 45.455 0.00 0.00 42.74 3.46
1890 1906 2.369860 TGCAGAAGCTCAAGGAAGAGAA 59.630 45.455 0.00 0.00 42.74 2.87
1899 1915 1.904990 AAGGAAGAGAAGAGGCGGCC 61.905 60.000 12.11 12.11 0.00 6.13
1911 1927 4.807039 GCGGCCGTGGTACGACAT 62.807 66.667 28.70 0.00 46.05 3.06
1932 1948 3.312404 CCATATGGCAGGAGTTCCG 57.688 57.895 9.29 0.00 42.08 4.30
1934 1950 1.541233 CCATATGGCAGGAGTTCCGTC 60.541 57.143 9.29 0.00 42.08 4.79
1945 1961 0.179000 AGTTCCGTCAGATGCCCATC 59.821 55.000 0.00 0.00 38.09 3.51
1946 1962 1.143838 TTCCGTCAGATGCCCATCG 59.856 57.895 2.85 0.00 42.48 3.84
1954 1970 0.600557 AGATGCCCATCGAGACGATC 59.399 55.000 3.65 0.00 45.19 3.69
1964 1980 1.663074 GAGACGATCATGCCGGAGC 60.663 63.158 5.05 0.00 40.48 4.70
1975 1991 2.315925 TGCCGGAGCTCAAGAATAAG 57.684 50.000 17.19 0.00 40.80 1.73
1977 1993 2.236146 TGCCGGAGCTCAAGAATAAGAA 59.764 45.455 17.19 0.00 40.80 2.52
1989 2005 4.657436 AGAATAAGAAGAGGCTACCGTG 57.343 45.455 0.00 0.00 0.00 4.94
1994 2010 0.606604 GAAGAGGCTACCGTGGTTCA 59.393 55.000 0.00 0.00 0.00 3.18
2035 2051 2.137523 CTGCTTTCCACAAATGCCAAC 58.862 47.619 0.00 0.00 37.25 3.77
2037 2053 1.269517 GCTTTCCACAAATGCCAACGA 60.270 47.619 0.00 0.00 33.12 3.85
2051 2067 1.004440 AACGAGGAGCTGCTTCACC 60.004 57.895 9.91 4.11 0.00 4.02
2057 2073 0.610232 GGAGCTGCTTCACCCAATGT 60.610 55.000 2.53 0.00 0.00 2.71
2058 2074 1.340017 GGAGCTGCTTCACCCAATGTA 60.340 52.381 2.53 0.00 0.00 2.29
2060 2076 3.433598 GGAGCTGCTTCACCCAATGTATA 60.434 47.826 2.53 0.00 0.00 1.47
2061 2077 3.812053 GAGCTGCTTCACCCAATGTATAG 59.188 47.826 2.53 0.00 0.00 1.31
2070 2086 4.012374 CACCCAATGTATAGCATGGATCC 58.988 47.826 4.20 4.20 37.96 3.36
2079 2095 6.497640 TGTATAGCATGGATCCTAGTGAGAT 58.502 40.000 14.23 8.45 0.00 2.75
2096 2112 5.046448 AGTGAGATGGAGGAGATAATCATGC 60.046 44.000 0.00 0.00 0.00 4.06
2131 2147 0.980423 AGAAGAGGGTGGAGCAGTTC 59.020 55.000 0.00 0.00 0.00 3.01
2138 2154 0.951040 GGTGGAGCAGTTCGTGAAGG 60.951 60.000 0.00 0.00 0.00 3.46
2150 2166 1.691976 TCGTGAAGGCCAAAGAGAAGA 59.308 47.619 5.01 0.00 0.00 2.87
2163 2179 3.864789 AGAGAAGAAGCAAGGGAACAA 57.135 42.857 0.00 0.00 0.00 2.83
2226 2242 4.627900 GGAGGAGAACGAGATCAAAAAGAC 59.372 45.833 0.00 0.00 0.00 3.01
2227 2243 4.238514 AGGAGAACGAGATCAAAAAGACG 58.761 43.478 0.00 0.00 0.00 4.18
2254 2270 6.444704 ACAGGAGATCAAGGATAAGAAGGTA 58.555 40.000 0.00 0.00 0.00 3.08
2272 2288 7.565680 AGAAGGTACTCGAATGGTATGAAAAT 58.434 34.615 0.00 0.00 38.49 1.82
2278 2294 5.184864 ACTCGAATGGTATGAAAATGCCAAA 59.815 36.000 0.00 0.00 39.69 3.28
2347 2363 6.714356 AGGAGAATGAGAAGGTCAAAAAGAAG 59.286 38.462 0.00 0.00 39.19 2.85
2357 2373 1.408702 TCAAAAAGAAGGTGTGGCTGC 59.591 47.619 0.00 0.00 0.00 5.25
2436 2452 4.080695 GCTGATGGGCATGATATTAGGAGA 60.081 45.833 0.00 0.00 0.00 3.71
2437 2453 5.426504 CTGATGGGCATGATATTAGGAGAC 58.573 45.833 0.00 0.00 0.00 3.36
2460 2476 1.200020 CAATCCCGGAAAGTCAACAGC 59.800 52.381 0.73 0.00 0.00 4.40
2461 2477 0.693049 ATCCCGGAAAGTCAACAGCT 59.307 50.000 0.73 0.00 0.00 4.24
2462 2478 1.344065 TCCCGGAAAGTCAACAGCTA 58.656 50.000 0.73 0.00 0.00 3.32
2463 2479 1.275291 TCCCGGAAAGTCAACAGCTAG 59.725 52.381 0.73 0.00 0.00 3.42
2464 2480 1.676014 CCCGGAAAGTCAACAGCTAGG 60.676 57.143 0.73 0.00 0.00 3.02
2509 2528 1.106944 GCGGAGGAGAAGAGGAGGAG 61.107 65.000 0.00 0.00 0.00 3.69
2511 2530 0.930726 GGAGGAGAAGAGGAGGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
2512 2531 1.503347 GGAGGAGAAGAGGAGGAGGAT 59.497 57.143 0.00 0.00 0.00 3.24
2514 2533 1.220236 AGGAGAAGAGGAGGAGGATGG 59.780 57.143 0.00 0.00 0.00 3.51
2515 2534 1.062505 GGAGAAGAGGAGGAGGATGGT 60.063 57.143 0.00 0.00 0.00 3.55
2517 2536 1.648568 AGAAGAGGAGGAGGATGGTGA 59.351 52.381 0.00 0.00 0.00 4.02
2518 2537 2.038659 GAAGAGGAGGAGGATGGTGAG 58.961 57.143 0.00 0.00 0.00 3.51
2565 2584 0.750249 AAGGAAAAACAACCGCCCAG 59.250 50.000 0.00 0.00 0.00 4.45
2579 2598 2.489971 CGCCCAGAAAGTCAACAGTAA 58.510 47.619 0.00 0.00 0.00 2.24
2623 2642 6.044404 TGGAAGGAGGAACAGAAGTAGAAAAT 59.956 38.462 0.00 0.00 0.00 1.82
2630 2649 4.576330 ACAGAAGTAGAAAATGGGGAGG 57.424 45.455 0.00 0.00 0.00 4.30
2639 2658 1.601248 AAATGGGGAGGAAGGAGAGG 58.399 55.000 0.00 0.00 0.00 3.69
2640 2659 0.327964 AATGGGGAGGAAGGAGAGGG 60.328 60.000 0.00 0.00 0.00 4.30
2641 2660 1.238896 ATGGGGAGGAAGGAGAGGGA 61.239 60.000 0.00 0.00 0.00 4.20
2683 2702 5.273944 CAGAGAGAAAAGGAAAAACAACCG 58.726 41.667 0.00 0.00 0.00 4.44
2702 2721 1.439679 GCCCGGAAAGTCAACAGTAG 58.560 55.000 0.73 0.00 0.00 2.57
2703 2722 1.439679 CCCGGAAAGTCAACAGTAGC 58.560 55.000 0.73 0.00 0.00 3.58
2706 2725 2.069273 CGGAAAGTCAACAGTAGCTGG 58.931 52.381 0.00 0.00 35.51 4.85
2751 2770 2.096248 ACGAAGAGAAGTAGAGCAGGG 58.904 52.381 0.00 0.00 0.00 4.45
2769 2791 1.152139 GGGAGGAGGATGGAGAGGG 60.152 68.421 0.00 0.00 0.00 4.30
2790 2812 2.170817 GGGGAGGAAGACATAACCAGAC 59.829 54.545 0.00 0.00 0.00 3.51
2808 2830 4.363138 CAGACAGAAAAGGCAAAAGAACC 58.637 43.478 0.00 0.00 0.00 3.62
2812 2834 3.066760 CAGAAAAGGCAAAAGAACCGTCT 59.933 43.478 0.00 0.00 34.72 4.18
2883 2905 2.049888 TTCGGCAATGACCATATGCA 57.950 45.000 0.00 0.00 41.80 3.96
2962 2984 3.257561 CGGGCGACTGATCTTGCG 61.258 66.667 0.00 0.00 39.98 4.85
2992 3014 0.534427 ATGACCATCCTGATGCAGCG 60.534 55.000 0.00 0.00 37.49 5.18
2995 3017 2.252346 CCATCCTGATGCAGCGAGC 61.252 63.158 0.00 0.00 45.96 5.03
3060 3082 1.661341 CGGAAGGAGAGGCTTCAATG 58.339 55.000 0.00 0.00 0.00 2.82
3079 3101 7.132694 TCAATGCATACTCAAACAAGTACAG 57.867 36.000 0.00 0.00 34.68 2.74
3108 3130 6.482641 CACTCCATTGAAGACCATCAGATTAG 59.517 42.308 0.00 0.00 0.00 1.73
3126 3148 2.634815 AGCACATGGGATGAGATGAC 57.365 50.000 0.00 0.00 0.00 3.06
3223 3245 3.091545 ACCATGGGCAGACATTACAAAG 58.908 45.455 18.09 0.00 0.00 2.77
3283 3305 4.584638 AGTAACCCCAATGATACAGCAA 57.415 40.909 0.00 0.00 0.00 3.91
3318 3340 2.759355 TGGGTGGTACATAGCTAGCTT 58.241 47.619 24.88 7.70 44.52 3.74
3431 3453 4.517285 GAGCAACTACATGGAGGAATCAA 58.483 43.478 10.42 0.00 0.00 2.57
3550 3572 6.349611 GCAATGAAGATTGGAAGAAACTGCTA 60.350 38.462 0.00 0.00 39.62 3.49
3596 3618 4.853196 CACTGAGTAATGCAAACCAAATCG 59.147 41.667 0.00 0.00 0.00 3.34
3618 3640 4.380233 CGTAAGGTTCTGTTATGACGACCT 60.380 45.833 4.86 4.86 0.00 3.85
3619 3641 3.594603 AGGTTCTGTTATGACGACCTG 57.405 47.619 8.67 0.00 0.00 4.00
3680 3702 3.843177 TCCCCCAAGATTCCAAAATCA 57.157 42.857 1.41 0.00 43.21 2.57
3744 3766 6.232692 TGATCATCAGAACACATGAGTTGAA 58.767 36.000 13.50 0.00 32.53 2.69
3757 3779 4.707030 TGAGTTGAATGCATTGGATCAC 57.293 40.909 18.59 5.86 0.00 3.06
3765 3787 1.371337 GCATTGGATCACGCTGAGCA 61.371 55.000 4.88 0.00 33.81 4.26
3787 3809 0.179181 CATTCAATGCGCTCGTTGCT 60.179 50.000 9.73 0.07 38.71 3.91
3812 3834 3.202151 AGGTCTTGTTCTTCCCTGTGAAA 59.798 43.478 0.00 0.00 31.06 2.69
3889 3911 1.725641 TTGCTAAGATGGCACGTGAG 58.274 50.000 22.23 6.78 39.55 3.51
3967 3989 4.240096 GCAATGGAATTCAACTCCAACAG 58.760 43.478 7.93 0.00 45.96 3.16
3996 4018 4.414337 AGAAGAGACAAGCCACATATCC 57.586 45.455 0.00 0.00 0.00 2.59
4038 4060 2.272471 GAAGCCCCCTGCCAGTAC 59.728 66.667 0.00 0.00 42.71 2.73
4225 4260 3.071167 GGAACACAGACCTTACTGACCTT 59.929 47.826 0.00 0.00 40.63 3.50
4351 4386 2.158842 GCATCTCCTTGCAGGTCATACT 60.159 50.000 0.00 0.00 42.31 2.12
4456 4492 6.070656 TGAAGTTTCCAAGAAAGGTGATGAT 58.929 36.000 0.00 0.00 0.00 2.45
4592 4628 4.313282 TGAATCTCTGTGCTCTTTGTCAG 58.687 43.478 0.00 0.00 0.00 3.51
4704 4741 4.218417 CGAGACATTTTCACCTCCCAAATT 59.782 41.667 0.00 0.00 0.00 1.82
4906 4943 7.454225 ACAAGAAGCTTACTTTGAGGAGTAAT 58.546 34.615 19.05 0.00 40.32 1.89
5062 5099 4.363991 ACAACTTCTGAGCCTGAAAGAT 57.636 40.909 0.00 0.00 34.07 2.40
5093 5130 4.202121 TGAACAGTAACTGTGACCTGAGTC 60.202 45.833 0.00 0.00 44.62 3.36
5115 5152 2.861935 GCATCATACATGCCACAAAAGC 59.138 45.455 0.00 0.00 39.01 3.51
5164 5201 0.261696 ATCCAATACCCAAGGCCACC 59.738 55.000 5.01 0.00 0.00 4.61
5197 5234 0.443869 CAAGCAACATTCCTCGTCGG 59.556 55.000 0.00 0.00 0.00 4.79
5229 5266 1.882912 TTTCTGCAGTGTGCTACCAG 58.117 50.000 14.67 0.00 45.31 4.00
5236 5273 0.692476 AGTGTGCTACCAGGCATTCA 59.308 50.000 0.00 0.00 44.34 2.57
5239 5276 1.281577 TGTGCTACCAGGCATTCATCA 59.718 47.619 0.00 0.00 44.34 3.07
5242 5279 1.802960 GCTACCAGGCATTCATCATCG 59.197 52.381 0.00 0.00 0.00 3.84
5266 5303 7.303634 GAATTGATATTCGTGTACACCAGTT 57.696 36.000 20.11 13.00 31.53 3.16
5307 5344 7.936847 TCTGTTACTTTATCATCAAGGTGTGTT 59.063 33.333 0.00 0.00 0.00 3.32
5352 5389 1.230635 AATCTCCACTGCGTGTGTGC 61.231 55.000 8.50 0.00 44.81 4.57
5372 5409 9.685828 TGTGTGCTAAAAGTTATTTTTATGTCC 57.314 29.630 0.00 0.00 39.74 4.02
5413 5450 8.946085 TGTGACTTTCCTTTAAACTGCTATATG 58.054 33.333 0.00 0.00 0.00 1.78
5421 5458 7.885922 TCCTTTAAACTGCTATATGGTTTCACA 59.114 33.333 0.00 0.00 35.29 3.58
5502 5539 8.519526 GGTATCCAAGTGTTGTGATGATTTTTA 58.480 33.333 0.00 0.00 0.00 1.52
5554 5591 5.918426 ATGGTGCATGATATGTGTTTTCA 57.082 34.783 0.00 0.00 0.00 2.69
5561 5598 6.862608 TGCATGATATGTGTTTTCAAAGTGTC 59.137 34.615 0.00 0.00 0.00 3.67
5590 5627 6.072064 TGAGTACTCTTCTTAGTTGCTGTACC 60.072 42.308 23.01 0.00 32.15 3.34
5629 5666 2.747396 TTGCCTTGCAATCCATTCAC 57.253 45.000 0.00 0.00 43.99 3.18
5636 5673 2.607499 TGCAATCCATTCACCCAACTT 58.393 42.857 0.00 0.00 0.00 2.66
5649 5686 7.411486 TTCACCCAACTTGAATCAAAAGTTA 57.589 32.000 0.00 0.00 44.11 2.24
5661 5698 3.334691 TCAAAAGTTATCTGCGGTCCAG 58.665 45.455 0.00 0.00 43.17 3.86
5699 5736 5.553123 TGTTTAGCGTTAATTCCTTCAGGA 58.447 37.500 0.00 0.00 43.73 3.86
5723 5760 4.048504 GCAAGTTGTTGATTTGTGTACCC 58.951 43.478 4.48 0.00 35.46 3.69
5787 5824 3.650070 TGTATGATCTGATCGAGTGGC 57.350 47.619 12.65 1.51 0.00 5.01
5800 5837 1.659098 CGAGTGGCGAGGAACAAATAC 59.341 52.381 0.00 0.00 44.57 1.89
5806 5843 2.334838 GCGAGGAACAAATACGACAGT 58.665 47.619 0.00 0.00 0.00 3.55
5884 5922 2.548480 CTGCATCTGATGTGCCACTATG 59.452 50.000 18.19 0.00 41.83 2.23
5933 5971 2.447714 GCCCACTCTCCCCTGATCC 61.448 68.421 0.00 0.00 0.00 3.36
6013 6051 1.630369 CTGGATTCTTGTCACCCCTGA 59.370 52.381 0.00 0.00 0.00 3.86
6054 6092 2.515926 TCCTAGCAGAATCATGTCGC 57.484 50.000 0.00 0.00 0.00 5.19
6057 6095 0.249447 TAGCAGAATCATGTCGCGGG 60.249 55.000 6.13 0.00 0.00 6.13
6107 6145 1.107945 CTTTGGGGAAAACCACGTGT 58.892 50.000 15.65 0.00 41.03 4.49
6110 6148 0.323542 TGGGGAAAACCACGTGTTGT 60.324 50.000 15.65 2.88 42.91 3.32
6127 6165 1.637338 TGTGAGATGGACTGCTCTGT 58.363 50.000 0.00 0.00 32.44 3.41
6134 6172 1.709578 TGGACTGCTCTGTTCTGACT 58.290 50.000 0.00 0.00 0.00 3.41
6163 6201 3.181517 CCGCCGTTCATATCATAGCAATG 60.182 47.826 0.00 0.00 0.00 2.82
6265 6303 1.432657 GCGTTCGGGAGTAGGACTC 59.567 63.158 0.00 0.00 44.32 3.36
6324 6362 0.320073 CAGACGGCGGAACCAGTTTA 60.320 55.000 13.24 0.00 39.03 2.01
6329 6367 1.203052 CGGCGGAACCAGTTTAGTCTA 59.797 52.381 0.00 0.00 39.03 2.59
6333 6371 2.416431 CGGAACCAGTTTAGTCTACCCG 60.416 54.545 0.00 0.00 0.00 5.28
6473 6748 1.600485 CGCCGCCGAAATTACCTTATT 59.400 47.619 0.00 0.00 36.29 1.40
6478 6753 3.875134 CGCCGAAATTACCTTATTCACCT 59.125 43.478 0.00 0.00 0.00 4.00
6483 6758 7.117956 GCCGAAATTACCTTATTCACCTATCTC 59.882 40.741 0.00 0.00 0.00 2.75
6501 6779 1.468520 CTCATTACTGTTTGTGGGGCG 59.531 52.381 0.00 0.00 0.00 6.13
6502 6780 1.072489 TCATTACTGTTTGTGGGGCGA 59.928 47.619 0.00 0.00 0.00 5.54
6503 6781 1.468520 CATTACTGTTTGTGGGGCGAG 59.531 52.381 0.00 0.00 0.00 5.03
6505 6783 1.412453 TACTGTTTGTGGGGCGAGGT 61.412 55.000 0.00 0.00 0.00 3.85
6506 6784 1.373435 CTGTTTGTGGGGCGAGGTA 59.627 57.895 0.00 0.00 0.00 3.08
6507 6785 0.035439 CTGTTTGTGGGGCGAGGTAT 60.035 55.000 0.00 0.00 0.00 2.73
6508 6786 1.208535 CTGTTTGTGGGGCGAGGTATA 59.791 52.381 0.00 0.00 0.00 1.47
6510 6788 2.285977 GTTTGTGGGGCGAGGTATAAG 58.714 52.381 0.00 0.00 0.00 1.73
6512 6790 1.052124 TGTGGGGCGAGGTATAAGGG 61.052 60.000 0.00 0.00 0.00 3.95
6514 6792 2.748350 GGGCGAGGTATAAGGGGC 59.252 66.667 0.00 0.00 0.00 5.80
6516 6794 2.505167 GGCGAGGTATAAGGGGCGT 61.505 63.158 0.00 0.00 0.00 5.68
6517 6795 1.181098 GGCGAGGTATAAGGGGCGTA 61.181 60.000 0.00 0.00 0.00 4.42
6518 6796 0.038801 GCGAGGTATAAGGGGCGTAC 60.039 60.000 0.00 0.00 0.00 3.67
6519 6797 1.321474 CGAGGTATAAGGGGCGTACA 58.679 55.000 0.00 0.00 0.00 2.90
6520 6798 1.682854 CGAGGTATAAGGGGCGTACAA 59.317 52.381 0.00 0.00 0.00 2.41
6521 6799 2.298163 CGAGGTATAAGGGGCGTACAAT 59.702 50.000 0.00 0.00 0.00 2.71
6522 6800 3.660865 GAGGTATAAGGGGCGTACAATG 58.339 50.000 0.00 0.00 0.00 2.82
6523 6801 3.043418 AGGTATAAGGGGCGTACAATGT 58.957 45.455 0.00 0.00 0.00 2.71
6524 6802 3.457012 AGGTATAAGGGGCGTACAATGTT 59.543 43.478 0.00 0.00 0.00 2.71
6525 6803 4.080186 AGGTATAAGGGGCGTACAATGTTT 60.080 41.667 0.00 0.00 0.00 2.83
6526 6804 4.035909 GGTATAAGGGGCGTACAATGTTTG 59.964 45.833 0.00 0.00 0.00 2.93
6527 6805 2.279935 AAGGGGCGTACAATGTTTGA 57.720 45.000 0.00 0.00 0.00 2.69
6528 6806 2.507407 AGGGGCGTACAATGTTTGAT 57.493 45.000 0.00 0.00 0.00 2.57
6529 6807 3.637911 AGGGGCGTACAATGTTTGATA 57.362 42.857 0.00 0.00 0.00 2.15
6530 6808 3.958018 AGGGGCGTACAATGTTTGATAA 58.042 40.909 0.00 0.00 0.00 1.75
6531 6809 4.337145 AGGGGCGTACAATGTTTGATAAA 58.663 39.130 0.00 0.00 0.00 1.40
6532 6810 4.398044 AGGGGCGTACAATGTTTGATAAAG 59.602 41.667 0.00 0.00 0.00 1.85
6533 6811 4.157105 GGGGCGTACAATGTTTGATAAAGT 59.843 41.667 0.00 0.00 0.00 2.66
6534 6812 5.092781 GGGCGTACAATGTTTGATAAAGTG 58.907 41.667 0.00 0.00 0.00 3.16
6535 6813 5.092781 GGCGTACAATGTTTGATAAAGTGG 58.907 41.667 0.00 0.00 0.00 4.00
6536 6814 5.335348 GGCGTACAATGTTTGATAAAGTGGT 60.335 40.000 0.00 0.00 0.00 4.16
6537 6815 6.146898 GCGTACAATGTTTGATAAAGTGGTT 58.853 36.000 0.00 0.00 0.00 3.67
6538 6816 6.639279 GCGTACAATGTTTGATAAAGTGGTTT 59.361 34.615 0.00 0.00 0.00 3.27
6539 6817 7.168469 GCGTACAATGTTTGATAAAGTGGTTTT 59.832 33.333 0.00 0.00 0.00 2.43
6540 6818 9.666626 CGTACAATGTTTGATAAAGTGGTTTTA 57.333 29.630 0.00 0.00 35.79 1.52
6556 6834 9.643693 AAGTGGTTTTATCTTAAATCTTGCATG 57.356 29.630 0.00 0.00 0.00 4.06
6557 6835 8.806146 AGTGGTTTTATCTTAAATCTTGCATGT 58.194 29.630 0.00 0.00 0.00 3.21
6606 6884 8.948631 TGTCTACAATGAATCATCTCTTAACC 57.051 34.615 0.00 0.00 0.00 2.85
6607 6885 8.762645 TGTCTACAATGAATCATCTCTTAACCT 58.237 33.333 0.00 0.00 0.00 3.50
6608 6886 9.606631 GTCTACAATGAATCATCTCTTAACCTT 57.393 33.333 0.00 0.00 0.00 3.50
6642 6920 9.975218 ATAACTAGTCATTCCTAAAAATGTGGT 57.025 29.630 0.00 0.00 37.77 4.16
6643 6921 7.687941 ACTAGTCATTCCTAAAAATGTGGTG 57.312 36.000 0.00 0.00 37.77 4.17
6644 6922 7.458397 ACTAGTCATTCCTAAAAATGTGGTGA 58.542 34.615 0.00 0.00 37.77 4.02
6645 6923 6.824305 AGTCATTCCTAAAAATGTGGTGAG 57.176 37.500 0.00 0.00 37.77 3.51
6646 6924 6.542821 AGTCATTCCTAAAAATGTGGTGAGA 58.457 36.000 0.00 0.00 37.77 3.27
6647 6925 6.431234 AGTCATTCCTAAAAATGTGGTGAGAC 59.569 38.462 0.00 0.00 37.77 3.36
6648 6926 6.206634 GTCATTCCTAAAAATGTGGTGAGACA 59.793 38.462 0.00 0.00 37.77 3.41
6649 6927 6.947733 TCATTCCTAAAAATGTGGTGAGACAT 59.052 34.615 0.00 0.00 38.23 3.06
6650 6928 8.106462 TCATTCCTAAAAATGTGGTGAGACATA 58.894 33.333 0.00 0.00 35.43 2.29
6651 6929 8.906867 CATTCCTAAAAATGTGGTGAGACATAT 58.093 33.333 0.00 0.00 35.43 1.78
6652 6930 8.877864 TTCCTAAAAATGTGGTGAGACATATT 57.122 30.769 0.00 0.00 35.43 1.28
6653 6931 8.279970 TCCTAAAAATGTGGTGAGACATATTG 57.720 34.615 0.00 0.00 35.43 1.90
6654 6932 7.888021 TCCTAAAAATGTGGTGAGACATATTGT 59.112 33.333 0.00 0.00 35.43 2.71
6655 6933 9.173021 CCTAAAAATGTGGTGAGACATATTGTA 57.827 33.333 0.00 0.00 35.43 2.41
6656 6934 9.988350 CTAAAAATGTGGTGAGACATATTGTAC 57.012 33.333 0.00 0.00 35.43 2.90
6657 6935 8.635765 AAAAATGTGGTGAGACATATTGTACT 57.364 30.769 0.00 0.00 35.43 2.73
6658 6936 9.733556 AAAAATGTGGTGAGACATATTGTACTA 57.266 29.630 0.00 0.00 35.43 1.82
6659 6937 9.733556 AAAATGTGGTGAGACATATTGTACTAA 57.266 29.630 0.00 0.00 35.43 2.24
6660 6938 8.948631 AATGTGGTGAGACATATTGTACTAAG 57.051 34.615 0.00 0.00 35.43 2.18
6661 6939 7.712204 TGTGGTGAGACATATTGTACTAAGA 57.288 36.000 0.00 0.00 0.00 2.10
6662 6940 8.306313 TGTGGTGAGACATATTGTACTAAGAT 57.694 34.615 0.00 0.00 0.00 2.40
6663 6941 9.416284 TGTGGTGAGACATATTGTACTAAGATA 57.584 33.333 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 90 4.093850 GCCTACGTTTGTACAGTATTTGGG 59.906 45.833 0.00 0.00 0.00 4.12
90 93 4.897140 TGGCCTACGTTTGTACAGTATTT 58.103 39.130 3.32 0.00 0.00 1.40
93 96 5.653507 CTTATGGCCTACGTTTGTACAGTA 58.346 41.667 3.32 0.00 0.00 2.74
94 97 4.501071 CTTATGGCCTACGTTTGTACAGT 58.499 43.478 3.32 0.00 0.00 3.55
95 98 3.308866 GCTTATGGCCTACGTTTGTACAG 59.691 47.826 3.32 0.00 34.27 2.74
96 99 3.264104 GCTTATGGCCTACGTTTGTACA 58.736 45.455 3.32 0.00 34.27 2.90
97 100 3.938778 GCTTATGGCCTACGTTTGTAC 57.061 47.619 3.32 0.00 34.27 2.90
110 113 2.026641 CACTCCATTGTGGGCTTATGG 58.973 52.381 0.00 0.00 38.32 2.74
239 242 3.243704 CCAAGGCTGCAGAGTAGTAGATC 60.244 52.174 20.43 0.00 0.00 2.75
364 367 9.961265 ACATGATATGTGCTTTGATTATCTTTG 57.039 29.630 0.00 0.00 43.01 2.77
401 404 5.826208 TCAAGAGGGTCCACTTTAAAAACTC 59.174 40.000 0.00 0.00 0.00 3.01
411 414 1.842562 CCATGATCAAGAGGGTCCACT 59.157 52.381 0.00 0.00 0.00 4.00
442 445 2.597217 TTGCGTCCTTTGCCCCAG 60.597 61.111 0.00 0.00 0.00 4.45
455 458 3.564225 AGGTCAAGAAAAGTAACCTTGCG 59.436 43.478 0.00 0.00 37.01 4.85
583 589 9.801873 GGTCAAAATGCTATGTTTATATGTTGT 57.198 29.630 0.00 0.00 0.00 3.32
585 591 8.682710 ACGGTCAAAATGCTATGTTTATATGTT 58.317 29.630 0.00 0.00 0.00 2.71
715 721 5.905480 TGATGTACGCTTTATGTAGCATG 57.095 39.130 0.00 0.00 41.28 4.06
740 746 1.569479 GCACGCAGTCACCTCTTTCC 61.569 60.000 0.00 0.00 41.61 3.13
985 996 2.309136 AGTTGGATTTGGACCAAGGG 57.691 50.000 7.07 0.00 46.12 3.95
1026 1037 4.305769 CATCTTGATGTCCGATTCTCCTC 58.694 47.826 2.66 0.00 0.00 3.71
1027 1038 3.070734 CCATCTTGATGTCCGATTCTCCT 59.929 47.826 9.41 0.00 0.00 3.69
1029 1040 2.805099 GCCATCTTGATGTCCGATTCTC 59.195 50.000 9.41 0.00 0.00 2.87
1030 1041 2.486191 GGCCATCTTGATGTCCGATTCT 60.486 50.000 0.00 0.00 0.00 2.40
1034 1045 1.143838 CGGCCATCTTGATGTCCGA 59.856 57.895 23.36 0.00 39.23 4.55
1111 1124 3.058160 CCCAGCAGTTTGGCCTCG 61.058 66.667 3.32 0.00 36.88 4.63
1180 1193 0.824109 CCATGTCGAGTAGGAAGCCA 59.176 55.000 0.00 0.00 0.00 4.75
1196 1209 2.203153 GCAACCCGTATCGGCCAT 60.203 61.111 2.24 0.00 46.86 4.40
1267 1280 2.014857 TCGATACAGTTCTGGGAGTCG 58.985 52.381 4.82 7.97 0.00 4.18
1282 1295 1.085893 TCTGCACGTAACGGTCGATA 58.914 50.000 0.00 0.00 0.00 2.92
1285 1298 2.084681 GGTCTGCACGTAACGGTCG 61.085 63.158 0.00 0.00 0.00 4.79
1330 1343 2.125673 CGTACGGTGCCAAGGAGG 60.126 66.667 7.57 0.00 41.84 4.30
1466 1479 0.883370 GGTGACTTGTCCGGGACAAC 60.883 60.000 33.05 25.29 45.88 3.32
1489 1502 2.432628 CCGGTGGAAGTGCGAGTC 60.433 66.667 0.00 0.00 0.00 3.36
1494 1507 0.250513 ATCTTCTCCGGTGGAAGTGC 59.749 55.000 26.34 0.00 40.50 4.40
1496 1509 0.905357 CCATCTTCTCCGGTGGAAGT 59.095 55.000 26.34 17.11 40.50 3.01
1519 1532 3.056891 GCCTCTGATTATCTTCCTCCTCG 60.057 52.174 0.00 0.00 0.00 4.63
1550 1563 5.873712 CCAATAGGTCAGCAATATCAGCTAG 59.126 44.000 2.65 0.00 41.14 3.42
1564 1577 2.627945 GCGTCAATGTCCAATAGGTCA 58.372 47.619 0.00 0.00 37.36 4.02
1606 1619 1.425066 TCACCTTGTCCTTTCAGCCAT 59.575 47.619 0.00 0.00 0.00 4.40
1614 1627 5.388654 ACTTTGAATGATCACCTTGTCCTT 58.611 37.500 0.00 0.00 34.61 3.36
1619 1632 4.763793 ACTGGACTTTGAATGATCACCTTG 59.236 41.667 0.00 0.00 34.61 3.61
1631 1644 2.054799 ACCAAGGCTACTGGACTTTGA 58.945 47.619 12.14 0.00 41.18 2.69
1654 1667 4.763355 ACTTGGACCTGGCTATCCATATA 58.237 43.478 5.45 0.00 44.49 0.86
1657 1670 1.898863 ACTTGGACCTGGCTATCCAT 58.101 50.000 5.45 0.00 44.49 3.41
1666 1679 6.045318 CACTAGTTCATCATACTTGGACCTG 58.955 44.000 0.00 0.00 0.00 4.00
1699 1712 0.962855 GTCCCTTTCCCAGCTTGAGC 60.963 60.000 0.00 0.00 42.49 4.26
1706 1719 4.611367 TCTCTTACTAGTCCCTTTCCCAG 58.389 47.826 0.00 0.00 0.00 4.45
1708 1721 4.869451 TCTCTCTTACTAGTCCCTTTCCC 58.131 47.826 0.00 0.00 0.00 3.97
1725 1738 6.389830 TCATGCTCAGTAGATCTTTCTCTC 57.610 41.667 0.00 0.00 33.17 3.20
1752 1765 1.992667 GCTCGGTTATTTTGGCTTTGC 59.007 47.619 0.00 0.00 0.00 3.68
1816 1829 3.131046 CCACCTTTATGGCCTCATTTGTC 59.869 47.826 3.32 0.00 40.22 3.18
1822 1838 0.331278 CCACCACCTTTATGGCCTCA 59.669 55.000 3.32 0.00 44.33 3.86
1835 1851 0.608640 ATCTCGTCCTTGTCCACCAC 59.391 55.000 0.00 0.00 0.00 4.16
1867 1883 3.008813 TCTCTTCCTTGAGCTTCTGCATT 59.991 43.478 0.00 0.00 42.74 3.56
1874 1890 2.027285 GCCTCTTCTCTTCCTTGAGCTT 60.027 50.000 0.00 0.00 34.29 3.74
1879 1895 0.742635 GCCGCCTCTTCTCTTCCTTG 60.743 60.000 0.00 0.00 0.00 3.61
1882 1898 2.188207 GGCCGCCTCTTCTCTTCC 59.812 66.667 0.71 0.00 0.00 3.46
1886 1902 4.821589 CCACGGCCGCCTCTTCTC 62.822 72.222 28.58 0.00 0.00 2.87
1899 1915 0.103390 TATGGCCATGTCGTACCACG 59.897 55.000 29.04 0.00 44.19 4.94
1922 1938 0.460987 GGCATCTGACGGAACTCCTG 60.461 60.000 0.00 0.00 0.00 3.86
1924 1940 1.153349 GGGCATCTGACGGAACTCC 60.153 63.158 0.00 0.00 0.00 3.85
1931 1947 0.596083 GTCTCGATGGGCATCTGACG 60.596 60.000 0.00 0.00 35.72 4.35
1932 1948 0.596083 CGTCTCGATGGGCATCTGAC 60.596 60.000 0.13 0.13 36.52 3.51
1934 1950 0.316522 ATCGTCTCGATGGGCATCTG 59.683 55.000 3.85 0.00 45.24 2.90
1945 1961 1.371022 CTCCGGCATGATCGTCTCG 60.371 63.158 0.00 0.00 0.00 4.04
1946 1962 1.663074 GCTCCGGCATGATCGTCTC 60.663 63.158 0.00 0.00 38.54 3.36
1954 1970 2.245159 TATTCTTGAGCTCCGGCATG 57.755 50.000 12.15 0.00 41.70 4.06
1964 1980 5.163499 ACGGTAGCCTCTTCTTATTCTTGAG 60.163 44.000 0.00 0.00 0.00 3.02
1975 1991 0.606604 TGAACCACGGTAGCCTCTTC 59.393 55.000 0.00 0.00 0.00 2.87
1977 1993 1.972978 GTGAACCACGGTAGCCTCT 59.027 57.895 0.00 0.00 0.00 3.69
1989 2005 4.379499 CCTTATCTTTGGCTTTCGTGAACC 60.379 45.833 0.00 0.00 0.00 3.62
1994 2010 3.010420 GCTCCTTATCTTTGGCTTTCGT 58.990 45.455 0.00 0.00 0.00 3.85
1999 2015 1.563410 AGCAGCTCCTTATCTTTGGCT 59.437 47.619 0.00 0.00 0.00 4.75
2004 2020 3.009473 TGTGGAAAGCAGCTCCTTATCTT 59.991 43.478 0.00 0.00 33.77 2.40
2035 2051 2.125350 GGGTGAAGCAGCTCCTCG 60.125 66.667 0.00 0.00 31.98 4.63
2037 2053 0.323178 CATTGGGTGAAGCAGCTCCT 60.323 55.000 0.00 0.00 31.98 3.69
2051 2067 6.070596 TCACTAGGATCCATGCTATACATTGG 60.071 42.308 15.82 0.00 36.64 3.16
2057 2073 5.896106 CCATCTCACTAGGATCCATGCTATA 59.104 44.000 15.82 0.00 30.15 1.31
2058 2074 4.715792 CCATCTCACTAGGATCCATGCTAT 59.284 45.833 15.82 3.63 30.15 2.97
2060 2076 2.905085 CCATCTCACTAGGATCCATGCT 59.095 50.000 15.82 0.00 0.00 3.79
2061 2077 2.902486 TCCATCTCACTAGGATCCATGC 59.098 50.000 15.82 0.00 0.00 4.06
2070 2086 7.631161 GCATGATTATCTCCTCCATCTCACTAG 60.631 44.444 0.00 0.00 0.00 2.57
2079 2095 1.002430 GCCGCATGATTATCTCCTCCA 59.998 52.381 0.00 0.00 0.00 3.86
2096 2112 2.158957 TCTTCTTATACTTGGGCAGCCG 60.159 50.000 5.00 0.00 0.00 5.52
2131 2147 2.169832 TCTTCTCTTTGGCCTTCACG 57.830 50.000 3.32 0.00 0.00 4.35
2138 2154 1.543358 CCCTTGCTTCTTCTCTTTGGC 59.457 52.381 0.00 0.00 0.00 4.52
2150 2166 4.023291 TCTTCAAACTTGTTCCCTTGCTT 58.977 39.130 0.00 0.00 0.00 3.91
2163 2179 4.493547 CTCTCGCAGATTCTCTTCAAACT 58.506 43.478 0.00 0.00 33.89 2.66
2226 2242 6.392625 TCTTATCCTTGATCTCCTGTAACG 57.607 41.667 0.00 0.00 0.00 3.18
2227 2243 7.147637 ACCTTCTTATCCTTGATCTCCTGTAAC 60.148 40.741 0.00 0.00 0.00 2.50
2254 2270 4.269183 TGGCATTTTCATACCATTCGAGT 58.731 39.130 0.00 0.00 0.00 4.18
2272 2288 1.133513 ACCATCACCTTCTGTTTGGCA 60.134 47.619 0.00 0.00 31.21 4.92
2278 2294 5.084519 TCAAGTAGTACCATCACCTTCTGT 58.915 41.667 0.00 0.00 0.00 3.41
2357 2373 3.200593 GGCCAGATGACGCAGCAG 61.201 66.667 0.00 0.00 0.00 4.24
2436 2452 0.682852 TGACTTTCCGGGATTGTCGT 59.317 50.000 18.57 5.18 0.00 4.34
2437 2453 1.463444 GTTGACTTTCCGGGATTGTCG 59.537 52.381 18.57 2.62 0.00 4.35
2476 2495 3.710722 CCGCTTCCTGCTCCCACT 61.711 66.667 0.00 0.00 40.11 4.00
2481 2500 1.608717 TTCTCCTCCGCTTCCTGCTC 61.609 60.000 0.00 0.00 40.11 4.26
2484 2503 0.459489 CTCTTCTCCTCCGCTTCCTG 59.541 60.000 0.00 0.00 0.00 3.86
2509 2528 0.326618 TTCCTCCTCCCTCACCATCC 60.327 60.000 0.00 0.00 0.00 3.51
2511 2530 0.119155 TGTTCCTCCTCCCTCACCAT 59.881 55.000 0.00 0.00 0.00 3.55
2512 2531 0.836400 GTGTTCCTCCTCCCTCACCA 60.836 60.000 0.00 0.00 0.00 4.17
2514 2533 0.610687 CTGTGTTCCTCCTCCCTCAC 59.389 60.000 0.00 0.00 0.00 3.51
2515 2534 0.487325 TCTGTGTTCCTCCTCCCTCA 59.513 55.000 0.00 0.00 0.00 3.86
2517 2536 1.353091 GTTCTGTGTTCCTCCTCCCT 58.647 55.000 0.00 0.00 0.00 4.20
2518 2537 1.056660 TGTTCTGTGTTCCTCCTCCC 58.943 55.000 0.00 0.00 0.00 4.30
2565 2584 7.062839 CAGATGAGCTAGTTACTGTTGACTTTC 59.937 40.741 0.00 1.27 0.00 2.62
2597 2616 4.689062 TCTACTTCTGTTCCTCCTTCCAT 58.311 43.478 0.00 0.00 0.00 3.41
2614 2633 3.783082 CTCCTTCCTCCCCATTTTCTACT 59.217 47.826 0.00 0.00 0.00 2.57
2623 2642 1.866997 TCCCTCTCCTTCCTCCCCA 60.867 63.158 0.00 0.00 0.00 4.96
2630 2649 0.105709 CCTCCTCCTCCCTCTCCTTC 60.106 65.000 0.00 0.00 0.00 3.46
2639 2658 1.258445 TTCTGCGTTCCTCCTCCTCC 61.258 60.000 0.00 0.00 0.00 4.30
2640 2659 0.108567 GTTCTGCGTTCCTCCTCCTC 60.109 60.000 0.00 0.00 0.00 3.71
2641 2660 1.545706 GGTTCTGCGTTCCTCCTCCT 61.546 60.000 0.00 0.00 0.00 3.69
2683 2702 1.439679 CTACTGTTGACTTTCCGGGC 58.560 55.000 0.00 0.00 0.00 6.13
2702 2721 1.414550 CTCTACTTTAGGGGAGCCAGC 59.585 57.143 0.00 0.00 0.00 4.85
2751 2770 1.152139 CCCTCTCCATCCTCCTCCC 60.152 68.421 0.00 0.00 0.00 4.30
2769 2791 2.170817 GTCTGGTTATGTCTTCCTCCCC 59.829 54.545 0.00 0.00 0.00 4.81
2790 2812 3.066760 AGACGGTTCTTTTGCCTTTTCTG 59.933 43.478 0.00 0.00 0.00 3.02
2808 2830 2.887568 GCACCTCCATCGCAGACG 60.888 66.667 0.00 0.00 42.51 4.18
2812 2834 0.251634 TGTATTGCACCTCCATCGCA 59.748 50.000 0.00 0.00 0.00 5.10
2845 2867 0.035056 AAACTCCCTTCAGCCATCGG 60.035 55.000 0.00 0.00 0.00 4.18
2962 2984 3.034635 AGGATGGTCATACACTGTCCTC 58.965 50.000 0.00 0.00 35.27 3.71
2992 3014 3.823304 AGACCTTGAAGTTGAAATGGCTC 59.177 43.478 0.00 0.00 0.00 4.70
2995 3017 3.256631 CCCAGACCTTGAAGTTGAAATGG 59.743 47.826 0.00 0.00 0.00 3.16
3035 3057 3.007973 GCCTCTCCTTCCGCTTCGT 62.008 63.158 0.00 0.00 0.00 3.85
3037 3059 1.599576 AAGCCTCTCCTTCCGCTTC 59.400 57.895 0.00 0.00 36.92 3.86
3040 3062 0.107459 ATTGAAGCCTCTCCTTCCGC 60.107 55.000 0.00 0.00 40.34 5.54
3060 3082 3.127030 GGGCTGTACTTGTTTGAGTATGC 59.873 47.826 0.00 0.00 34.84 3.14
3079 3101 0.681243 GGTCTTCAATGGAGTGGGGC 60.681 60.000 0.00 0.00 0.00 5.80
3108 3130 2.336945 TGTCATCTCATCCCATGTGC 57.663 50.000 0.00 0.00 0.00 4.57
3126 3148 4.674623 GCTGTTGAATCTCTTGCTCCAATG 60.675 45.833 0.00 0.00 0.00 2.82
3283 3305 1.619827 CACCCATGCAAATGAGGTGTT 59.380 47.619 14.80 0.00 42.47 3.32
3394 3416 1.377202 GCTCCCGTCCAGCAATTGA 60.377 57.895 10.34 0.00 36.82 2.57
3431 3453 3.262405 AGAATTTGCTCAACAATGCCCAT 59.738 39.130 0.00 0.00 38.31 4.00
3596 3618 4.863131 CAGGTCGTCATAACAGAACCTTAC 59.137 45.833 0.00 0.00 32.82 2.34
3618 3640 3.489355 CACATCTTATAATGGCTGGGCA 58.511 45.455 0.00 0.00 0.00 5.36
3619 3641 2.229784 GCACATCTTATAATGGCTGGGC 59.770 50.000 0.00 0.00 0.00 5.36
3680 3702 4.835615 TCTTCTGACTAAGCTTGTTCTCCT 59.164 41.667 9.86 0.00 0.00 3.69
3744 3766 1.306148 CTCAGCGTGATCCAATGCAT 58.694 50.000 0.00 0.00 0.00 3.96
3757 3779 1.477105 CATTGAATGCATGCTCAGCG 58.523 50.000 20.33 6.30 33.85 5.18
3787 3809 1.618837 CAGGGAAGAACAAGACCTCGA 59.381 52.381 0.00 0.00 0.00 4.04
3793 3815 4.584325 CCAATTTCACAGGGAAGAACAAGA 59.416 41.667 0.00 0.00 36.72 3.02
3859 3881 3.564644 CCATCTTAGCAATGAAGGAGCAG 59.435 47.826 0.00 0.00 0.00 4.24
3889 3911 2.162681 CCTGTGTTCCCAACATTCTCC 58.837 52.381 0.00 0.00 44.35 3.71
3967 3989 1.948144 GCTTGTCTCTTCTTGGGGAGC 60.948 57.143 0.00 0.00 0.00 4.70
4060 4082 4.697352 AGCAGCGAATTCAGAAATGTTACT 59.303 37.500 6.22 0.00 0.00 2.24
4225 4260 1.988107 AGCTTGTCAATCTCCTTGGGA 59.012 47.619 0.00 0.00 35.43 4.37
4351 4386 2.501723 GGAAAGTGACTCATCTAGCCCA 59.498 50.000 0.00 0.00 0.00 5.36
4456 4492 4.988540 CGACCAACTTCAGTTAACTCATGA 59.011 41.667 4.77 0.00 36.32 3.07
4592 4628 8.475331 TCAGTCTTTCTTATTTCAATACGGAC 57.525 34.615 0.00 0.00 0.00 4.79
4924 4961 5.362430 GTCTGAGTCCTCTATGACAAGGAAT 59.638 44.000 0.00 0.00 43.18 3.01
4925 4962 4.707448 GTCTGAGTCCTCTATGACAAGGAA 59.293 45.833 0.00 0.00 43.18 3.36
4927 4964 4.019858 TGTCTGAGTCCTCTATGACAAGG 58.980 47.826 12.35 0.00 37.73 3.61
5062 5099 5.926542 GTCACAGTTACTGTTCAGCTCAATA 59.073 40.000 16.06 0.00 42.59 1.90
5093 5130 2.847959 TTTGTGGCATGTATGATGCG 57.152 45.000 0.00 0.00 45.41 4.73
5115 5152 6.017109 CGTAAGGATAGGGTGATTTGGATTTG 60.017 42.308 0.00 0.00 0.00 2.32
5164 5201 0.460811 TGCTTGCATCAGTAGCCTCG 60.461 55.000 4.93 0.00 34.03 4.63
5229 5266 7.966157 GAATATCAATTCGATGATGAATGCC 57.034 36.000 11.03 0.00 40.21 4.40
5242 5279 6.903883 ACTGGTGTACACGAATATCAATTC 57.096 37.500 19.41 2.05 38.53 2.17
5266 5303 7.414222 AAGTAACAGACGACCAGGATAAATA 57.586 36.000 0.00 0.00 0.00 1.40
5280 5317 7.387948 ACACACCTTGATGATAAAGTAACAGAC 59.612 37.037 0.00 0.00 0.00 3.51
5307 5344 0.467804 TAGCACACCTGCACACTCAA 59.532 50.000 0.00 0.00 46.97 3.02
5372 5409 0.179048 TCACACACAGCCAACTCCTG 60.179 55.000 0.00 0.00 36.41 3.86
5413 5450 6.374333 ACACCACACTTATATCATGTGAAACC 59.626 38.462 13.00 0.00 45.34 3.27
5421 5458 4.080356 ACTGGCACACCACACTTATATCAT 60.080 41.667 0.00 0.00 42.67 2.45
5453 5490 8.019656 ACCATAAGATACTTACAACACCTAGG 57.980 38.462 7.41 7.41 0.00 3.02
5521 5558 8.845227 ACATATCATGCACCATTCGTTTAATTA 58.155 29.630 0.00 0.00 0.00 1.40
5554 5591 7.826918 AAGAAGAGTACTCAGTAGACACTTT 57.173 36.000 24.44 6.05 30.46 2.66
5561 5598 7.094549 ACAGCAACTAAGAAGAGTACTCAGTAG 60.095 40.741 24.44 18.87 0.00 2.57
5590 5627 5.335661 GGCAATAACAGAGTGGGTGTAAAAG 60.336 44.000 0.00 0.00 0.00 2.27
5629 5666 6.587608 GCAGATAACTTTTGATTCAAGTTGGG 59.412 38.462 12.10 3.15 43.02 4.12
5636 5673 4.394920 GGACCGCAGATAACTTTTGATTCA 59.605 41.667 0.00 0.00 0.00 2.57
5649 5686 2.026822 ACTTCATTTCTGGACCGCAGAT 60.027 45.455 0.00 0.00 0.00 2.90
5661 5698 6.142817 ACGCTAAACATTGACACTTCATTTC 58.857 36.000 0.00 0.00 0.00 2.17
5699 5736 5.348164 GGTACACAAATCAACAACTTGCTT 58.652 37.500 0.00 0.00 0.00 3.91
5723 5760 4.800993 GTCGTCAGAACAGAGGATACATTG 59.199 45.833 0.00 0.00 35.22 2.82
5762 5799 5.037385 CACTCGATCAGATCATACAAACGT 58.963 41.667 11.12 0.00 0.00 3.99
5763 5800 4.442403 CCACTCGATCAGATCATACAAACG 59.558 45.833 11.12 0.00 0.00 3.60
5787 5824 2.666508 CCACTGTCGTATTTGTTCCTCG 59.333 50.000 0.00 0.00 0.00 4.63
5800 5837 4.386049 GTCTGTCTTGATTAACCACTGTCG 59.614 45.833 0.00 0.00 0.00 4.35
5806 5843 5.029807 TGTGTGTCTGTCTTGATTAACCA 57.970 39.130 0.00 0.00 0.00 3.67
5855 5892 3.244146 GCACATCAGATGCAGATACTCCT 60.244 47.826 10.59 0.00 42.88 3.69
5884 5922 4.295051 GAGAGGACTTAACGAGATGATGC 58.705 47.826 0.00 0.00 0.00 3.91
5933 5971 6.773976 TGATTTCTTGGGGTAATTAGCAAG 57.226 37.500 16.07 11.56 0.00 4.01
5994 6032 1.351017 GTCAGGGGTGACAAGAATCCA 59.649 52.381 0.60 0.00 38.59 3.41
6039 6077 1.522355 CCCGCGACATGATTCTGCT 60.522 57.895 8.23 0.00 0.00 4.24
6083 6121 2.364002 CGTGGTTTTCCCCAAAGTTCAT 59.636 45.455 0.00 0.00 39.73 2.57
6107 6145 1.973515 ACAGAGCAGTCCATCTCACAA 59.026 47.619 0.00 0.00 0.00 3.33
6110 6148 2.233186 CAGAACAGAGCAGTCCATCTCA 59.767 50.000 0.00 0.00 0.00 3.27
6127 6165 1.602237 GGCGGATTGGGAGTCAGAA 59.398 57.895 0.00 0.00 0.00 3.02
6134 6172 0.762418 ATATGAACGGCGGATTGGGA 59.238 50.000 13.24 0.00 0.00 4.37
6163 6201 2.243810 TGGGCCTGTTTTACATGTTCC 58.756 47.619 2.30 0.00 0.00 3.62
6170 6208 1.553248 GGGGATTTGGGCCTGTTTTAC 59.447 52.381 4.53 0.00 0.00 2.01
6181 6219 3.909662 CGTGAGCTGGGGATTTGG 58.090 61.111 0.00 0.00 0.00 3.28
6244 6282 4.867599 CCTACTCCCGAACGCCGC 62.868 72.222 0.00 0.00 36.84 6.53
6256 6294 2.274760 CCCGACCGGAGTCCTACT 59.725 66.667 9.46 0.00 40.12 2.57
6257 6295 2.832201 CCCCGACCGGAGTCCTAC 60.832 72.222 9.46 0.00 40.12 3.18
6258 6296 4.133373 CCCCCGACCGGAGTCCTA 62.133 72.222 9.46 0.00 40.12 2.94
6265 6303 4.091939 GTTCCTTCCCCCGACCGG 62.092 72.222 0.00 0.00 0.00 5.28
6268 6306 4.772687 GCCGTTCCTTCCCCCGAC 62.773 72.222 0.00 0.00 0.00 4.79
6384 6422 2.095161 GGAATATAGTCCTCTGCCGTCG 60.095 54.545 12.01 0.00 34.56 5.12
6386 6424 1.887198 CGGAATATAGTCCTCTGCCGT 59.113 52.381 16.71 0.00 35.31 5.68
6447 6722 1.853114 TAATTTCGGCGGCGCAACAA 61.853 50.000 34.36 21.47 0.00 2.83
6473 6748 6.406370 CCACAAACAGTAATGAGATAGGTGA 58.594 40.000 0.00 0.00 0.00 4.02
6478 6753 4.523083 GCCCCACAAACAGTAATGAGATA 58.477 43.478 0.00 0.00 0.00 1.98
6483 6758 1.468520 CTCGCCCCACAAACAGTAATG 59.531 52.381 0.00 0.00 0.00 1.90
6501 6779 3.070590 ACATTGTACGCCCCTTATACCTC 59.929 47.826 0.00 0.00 0.00 3.85
6502 6780 3.043418 ACATTGTACGCCCCTTATACCT 58.957 45.455 0.00 0.00 0.00 3.08
6503 6781 3.480505 ACATTGTACGCCCCTTATACC 57.519 47.619 0.00 0.00 0.00 2.73
6505 6783 5.100344 TCAAACATTGTACGCCCCTTATA 57.900 39.130 0.00 0.00 0.00 0.98
6506 6784 3.958018 TCAAACATTGTACGCCCCTTAT 58.042 40.909 0.00 0.00 0.00 1.73
6507 6785 3.420300 TCAAACATTGTACGCCCCTTA 57.580 42.857 0.00 0.00 0.00 2.69
6508 6786 2.279935 TCAAACATTGTACGCCCCTT 57.720 45.000 0.00 0.00 0.00 3.95
6510 6788 4.157105 ACTTTATCAAACATTGTACGCCCC 59.843 41.667 0.00 0.00 0.00 5.80
6512 6790 5.092781 CCACTTTATCAAACATTGTACGCC 58.907 41.667 0.00 0.00 0.00 5.68
6514 6792 8.568732 AAAACCACTTTATCAAACATTGTACG 57.431 30.769 0.00 0.00 0.00 3.67
6530 6808 9.643693 CATGCAAGATTTAAGATAAAACCACTT 57.356 29.630 0.00 0.00 0.00 3.16
6531 6809 8.806146 ACATGCAAGATTTAAGATAAAACCACT 58.194 29.630 0.00 0.00 0.00 4.00
6532 6810 8.986477 ACATGCAAGATTTAAGATAAAACCAC 57.014 30.769 0.00 0.00 0.00 4.16
6580 6858 9.383519 GGTTAAGAGATGATTCATTGTAGACAA 57.616 33.333 0.00 0.00 40.51 3.18
6581 6859 8.762645 AGGTTAAGAGATGATTCATTGTAGACA 58.237 33.333 0.00 0.00 0.00 3.41
6582 6860 9.606631 AAGGTTAAGAGATGATTCATTGTAGAC 57.393 33.333 0.00 0.00 0.00 2.59
6616 6894 9.975218 ACCACATTTTTAGGAATGACTAGTTAT 57.025 29.630 0.00 0.00 38.93 1.89
6617 6895 9.226606 CACCACATTTTTAGGAATGACTAGTTA 57.773 33.333 0.00 0.00 38.93 2.24
6618 6896 7.942341 TCACCACATTTTTAGGAATGACTAGTT 59.058 33.333 0.00 0.00 38.93 2.24
6619 6897 7.458397 TCACCACATTTTTAGGAATGACTAGT 58.542 34.615 0.00 0.00 38.93 2.57
6620 6898 7.824289 TCTCACCACATTTTTAGGAATGACTAG 59.176 37.037 4.76 0.00 38.93 2.57
6621 6899 7.606456 GTCTCACCACATTTTTAGGAATGACTA 59.394 37.037 4.76 0.00 38.93 2.59
6622 6900 6.431234 GTCTCACCACATTTTTAGGAATGACT 59.569 38.462 4.76 0.00 38.93 3.41
6623 6901 6.206634 TGTCTCACCACATTTTTAGGAATGAC 59.793 38.462 4.76 0.00 38.93 3.06
6624 6902 6.303054 TGTCTCACCACATTTTTAGGAATGA 58.697 36.000 4.76 0.00 38.93 2.57
6625 6903 6.573664 TGTCTCACCACATTTTTAGGAATG 57.426 37.500 0.00 0.00 41.64 2.67
6626 6904 9.479549 AATATGTCTCACCACATTTTTAGGAAT 57.520 29.630 0.00 0.00 38.07 3.01
6627 6905 8.739039 CAATATGTCTCACCACATTTTTAGGAA 58.261 33.333 0.00 0.00 38.07 3.36
6628 6906 7.888021 ACAATATGTCTCACCACATTTTTAGGA 59.112 33.333 0.00 0.00 38.07 2.94
6629 6907 8.055279 ACAATATGTCTCACCACATTTTTAGG 57.945 34.615 0.00 0.00 38.07 2.69
6630 6908 9.988350 GTACAATATGTCTCACCACATTTTTAG 57.012 33.333 0.00 0.00 38.07 1.85
6631 6909 9.733556 AGTACAATATGTCTCACCACATTTTTA 57.266 29.630 0.00 0.00 38.07 1.52
6632 6910 8.635765 AGTACAATATGTCTCACCACATTTTT 57.364 30.769 0.00 0.00 38.07 1.94
6633 6911 9.733556 TTAGTACAATATGTCTCACCACATTTT 57.266 29.630 0.00 0.00 38.07 1.82
6634 6912 9.383519 CTTAGTACAATATGTCTCACCACATTT 57.616 33.333 0.00 0.00 38.07 2.32
6635 6913 8.758829 TCTTAGTACAATATGTCTCACCACATT 58.241 33.333 0.00 0.00 38.07 2.71
6636 6914 8.306313 TCTTAGTACAATATGTCTCACCACAT 57.694 34.615 0.00 0.00 40.28 3.21
6637 6915 7.712204 TCTTAGTACAATATGTCTCACCACA 57.288 36.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.