Multiple sequence alignment - TraesCS6D01G376600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G376600 chr6D 100.000 5921 0 0 1 5921 459243397 459249317 0.000000e+00 10935.0
1 TraesCS6D01G376600 chr6D 86.551 3279 325 50 1871 5077 459262452 459265686 0.000000e+00 3506.0
2 TraesCS6D01G376600 chr6D 89.677 2257 195 19 2889 5123 458975444 458977684 0.000000e+00 2843.0
3 TraesCS6D01G376600 chr6D 87.240 2116 219 29 795 2881 458973260 458975353 0.000000e+00 2364.0
4 TraesCS6D01G376600 chr6D 87.146 2116 219 29 795 2881 459049421 459051512 0.000000e+00 2351.0
5 TraesCS6D01G376600 chr6D 87.276 1619 184 16 795 2406 459046574 459048177 0.000000e+00 1829.0
6 TraesCS6D01G376600 chr6D 87.238 1622 175 19 795 2402 458970843 458972446 0.000000e+00 1820.0
7 TraesCS6D01G376600 chr6D 89.713 1429 120 18 2889 4310 459051598 459053006 0.000000e+00 1799.0
8 TraesCS6D01G376600 chr6D 86.631 935 85 20 4306 5208 459058146 459059072 0.000000e+00 998.0
9 TraesCS6D01G376600 chr6D 79.467 638 80 16 34 649 458970026 458970634 7.150000e-109 405.0
10 TraesCS6D01G376600 chr6D 78.398 412 26 29 5304 5684 459059532 459059911 6.010000e-50 209.0
11 TraesCS6D01G376600 chr6D 85.057 174 19 3 34 206 459045782 459045949 2.840000e-38 171.0
12 TraesCS6D01G376600 chr6D 88.750 80 2 5 5510 5583 458978350 458978428 2.270000e-14 91.6
13 TraesCS6D01G376600 chr6B 87.517 4446 449 52 795 5164 698987011 698991426 0.000000e+00 5038.0
14 TraesCS6D01G376600 chr6B 92.941 2890 130 25 2964 5808 698976250 698979110 0.000000e+00 4139.0
15 TraesCS6D01G376600 chr6B 95.652 1702 69 3 795 2494 698974519 698976217 0.000000e+00 2728.0
16 TraesCS6D01G376600 chr6B 89.199 1722 160 15 2920 4624 698104396 698106108 0.000000e+00 2126.0
17 TraesCS6D01G376600 chr6B 87.844 436 35 4 366 801 698974077 698974494 4.120000e-136 496.0
18 TraesCS6D01G376600 chr6B 81.494 616 89 13 4610 5208 698106292 698106899 3.210000e-132 483.0
19 TraesCS6D01G376600 chr6B 94.737 133 5 2 174 304 698973943 698974075 7.780000e-49 206.0
20 TraesCS6D01G376600 chr6B 82.249 169 16 6 5516 5675 698107644 698107807 3.720000e-27 134.0
21 TraesCS6D01G376600 chr6B 84.000 100 11 3 5687 5782 698992352 698992450 2.270000e-14 91.6
22 TraesCS6D01G376600 chr6B 83.721 86 5 3 5720 5797 698107848 698107932 8.230000e-09 73.1
23 TraesCS6D01G376600 chr6A 96.893 2607 70 5 3088 5686 605361583 605364186 0.000000e+00 4355.0
24 TraesCS6D01G376600 chr6A 95.467 2228 89 5 795 3020 605358795 605361012 0.000000e+00 3544.0
25 TraesCS6D01G376600 chr6A 89.357 2255 200 17 2889 5123 605337429 605339663 0.000000e+00 2798.0
26 TraesCS6D01G376600 chr6A 87.852 1844 213 8 795 2632 605366883 605368721 0.000000e+00 2154.0
27 TraesCS6D01G376600 chr6A 89.407 1350 129 10 1071 2409 605325181 605326527 0.000000e+00 1688.0
28 TraesCS6D01G376600 chr6A 90.455 1142 102 5 3211 4348 605368720 605369858 0.000000e+00 1498.0
29 TraesCS6D01G376600 chr6A 86.567 804 79 15 4382 5164 605369940 605370735 0.000000e+00 859.0
30 TraesCS6D01G376600 chr6A 85.982 799 66 6 4 801 605358017 605358770 0.000000e+00 813.0
31 TraesCS6D01G376600 chr6A 85.620 605 55 13 203 801 605366280 605366858 1.820000e-169 606.0
32 TraesCS6D01G376600 chr6A 90.244 164 6 5 5592 5755 605372105 605372258 7.780000e-49 206.0
33 TraesCS6D01G376600 chr6A 92.969 128 7 2 5703 5829 605364231 605364357 1.010000e-42 185.0
34 TraesCS6D01G376600 chr6A 98.851 87 1 0 3018 3104 605361318 605361404 7.940000e-34 156.0
35 TraesCS6D01G376600 chr6A 95.918 49 0 2 5441 5487 605340264 605340312 1.770000e-10 78.7
36 TraesCS6D01G376600 chr5B 80.690 145 19 7 5247 5390 111269716 111269580 2.920000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G376600 chr6D 459243397 459249317 5920 False 10935.000 10935 100.00000 1 5921 1 chr6D.!!$F1 5920
1 TraesCS6D01G376600 chr6D 459262452 459265686 3234 False 3506.000 3506 86.55100 1871 5077 1 chr6D.!!$F2 3206
2 TraesCS6D01G376600 chr6D 459045782 459053006 7224 False 1537.500 2351 87.29800 34 4310 4 chr6D.!!$F4 4276
3 TraesCS6D01G376600 chr6D 458970026 458978428 8402 False 1504.720 2843 86.47440 34 5583 5 chr6D.!!$F3 5549
4 TraesCS6D01G376600 chr6D 459058146 459059911 1765 False 603.500 998 82.51450 4306 5684 2 chr6D.!!$F5 1378
5 TraesCS6D01G376600 chr6B 698987011 698992450 5439 False 2564.800 5038 85.75850 795 5782 2 chr6B.!!$F3 4987
6 TraesCS6D01G376600 chr6B 698973943 698979110 5167 False 1892.250 4139 92.79350 174 5808 4 chr6B.!!$F2 5634
7 TraesCS6D01G376600 chr6B 698104396 698107932 3536 False 704.025 2126 84.16575 2920 5797 4 chr6B.!!$F1 2877
8 TraesCS6D01G376600 chr6A 605325181 605326527 1346 False 1688.000 1688 89.40700 1071 2409 1 chr6A.!!$F1 1338
9 TraesCS6D01G376600 chr6A 605337429 605340312 2883 False 1438.350 2798 92.63750 2889 5487 2 chr6A.!!$F2 2598
10 TraesCS6D01G376600 chr6A 605358017 605372258 14241 False 1437.600 4355 91.09000 4 5829 10 chr6A.!!$F3 5825

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
729 802 0.031178 GCCAGCACACTCAAACAAGG 59.969 55.000 0.00 0.0 0.00 3.61 F
1487 1600 0.813184 GATTACCCGACCGACACTCA 59.187 55.000 0.00 0.0 0.00 3.41 F
1530 1643 1.138036 CACCCACAAGATGCATGCG 59.862 57.895 14.09 0.0 0.00 4.73 F
1632 1745 1.260561 CGGCAGCGTATTACATGGAAC 59.739 52.381 0.00 0.0 0.00 3.62 F
1668 1781 1.653151 GGCGAAGTCTGGTATGGAAC 58.347 55.000 0.00 0.0 0.00 3.62 F
1758 1871 1.751924 GGTGATGAGGTCTACGCTTCT 59.248 52.381 0.00 0.0 0.00 2.85 F
2826 5831 1.817099 CTCACATGGGCGGAAGAGC 60.817 63.158 0.00 0.0 0.00 4.09 F
4540 8190 3.328050 ACTTCCCCAGCATTATAGCCTAC 59.672 47.826 0.00 0.0 34.23 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2235 2351 0.378257 CCGTGCCAATCAAATCTCCG 59.622 55.000 0.00 0.00 0.00 4.63 R
2584 5564 0.917533 ATTCTGCATCCAGTGGCTCT 59.082 50.000 3.51 0.00 40.09 4.09 R
2697 5700 1.274728 GCTGACACCTCAGATGTCTGT 59.725 52.381 7.82 0.00 46.32 3.41 R
2715 5718 1.372307 GGCTGGCCAAATGTTTGCT 59.628 52.632 7.01 0.00 36.86 3.91 R
2826 5831 3.561310 CAGGGTGGTATGATTGACATTCG 59.439 47.826 0.00 0.00 40.07 3.34 R
3617 7218 7.288317 TGTTTGTTGCAAGTACAATTTCTTG 57.712 32.000 0.00 9.21 42.44 3.02 R
4659 8516 1.721389 CTGTCCACAATTGACGAGTCG 59.279 52.381 13.59 11.85 35.46 4.18 R
5432 17711 0.107508 TGCTCTAAGCCATGCCACTC 60.108 55.000 0.00 0.00 41.51 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 6.037610 GCCATCTTAGCAAGTATGTATATGGC 59.962 42.308 0.00 0.00 40.91 4.40
134 135 9.229784 CACATTTATGATACAAGAAATGCACTC 57.770 33.333 15.65 0.00 41.08 3.51
209 212 5.305644 AGGTGATACACTCTTTTCAGACAGT 59.694 40.000 0.00 0.00 34.40 3.55
253 286 3.573967 CCTTTTTCTTGCAAAGCTAGGGA 59.426 43.478 0.00 0.00 45.70 4.20
274 307 2.108157 AAACGCAGGCACGACTGA 59.892 55.556 3.45 0.00 40.97 3.41
375 408 7.488322 TGACCTCACATTTTTAAGAAACAAGG 58.512 34.615 0.00 0.00 0.00 3.61
396 429 1.427368 ACAAGGCCCCTTTGTACATCA 59.573 47.619 7.06 0.00 33.42 3.07
403 436 2.749621 CCCCTTTGTACATCAAGTCAGC 59.250 50.000 0.00 0.00 37.35 4.26
404 437 3.411446 CCCTTTGTACATCAAGTCAGCA 58.589 45.455 0.00 0.00 37.35 4.41
407 440 4.095483 CCTTTGTACATCAAGTCAGCATCC 59.905 45.833 0.00 0.00 37.35 3.51
441 474 5.862678 TCCGAAACCCAAAAGAAAAGAAT 57.137 34.783 0.00 0.00 0.00 2.40
484 517 5.622233 GCTGATCTGTCCATGTTTTTAACCC 60.622 44.000 1.27 0.00 0.00 4.11
494 527 6.957020 TCCATGTTTTTAACCCATCCAGTTAT 59.043 34.615 0.00 0.00 30.17 1.89
505 538 7.446106 ACCCATCCAGTTATAGTTTACATGA 57.554 36.000 0.00 0.00 0.00 3.07
584 618 7.814107 CACTGATGTTAACATTTACCTGCAATT 59.186 33.333 21.63 0.00 36.57 2.32
603 637 7.635423 TGCAATTTCATATGTATACGGTCAAC 58.365 34.615 1.90 0.00 0.00 3.18
610 644 8.857694 TCATATGTATACGGTCAACAGATAGA 57.142 34.615 1.90 2.61 0.00 1.98
617 651 4.421948 ACGGTCAACAGATAGATTCGTTC 58.578 43.478 0.00 0.00 0.00 3.95
621 655 5.292101 GGTCAACAGATAGATTCGTTCCAAG 59.708 44.000 0.00 0.00 0.00 3.61
635 669 6.554334 TCGTTCCAAGAAAAACATCTAAGG 57.446 37.500 0.00 0.00 0.00 2.69
659 696 3.822940 ACATACCAAAACCGGAACAAGA 58.177 40.909 9.46 0.00 0.00 3.02
674 747 4.983671 AACAAGAGGTTTGTTCTGTTCC 57.016 40.909 0.00 0.00 38.10 3.62
685 758 6.806739 GGTTTGTTCTGTTCCTAAACATATGC 59.193 38.462 1.58 0.00 44.18 3.14
729 802 0.031178 GCCAGCACACTCAAACAAGG 59.969 55.000 0.00 0.00 0.00 3.61
735 808 2.427095 GCACACTCAAACAAGGAAACCT 59.573 45.455 0.00 0.00 33.87 3.50
749 822 2.613223 GGAAACCTAGCAGTCACACCTC 60.613 54.545 0.00 0.00 0.00 3.85
899 1008 4.039004 AGCACCACAATAAAATGCTTGACA 59.961 37.500 0.00 0.00 44.01 3.58
932 1041 2.108075 TCCCAGGAGTTCTGATTTGCAA 59.892 45.455 0.00 0.00 46.18 4.08
941 1050 5.916318 AGTTCTGATTTGCAATGTCCAAAA 58.084 33.333 0.00 0.00 35.97 2.44
981 1091 5.441718 TTGCTTCCATTATCTCAGTTCCT 57.558 39.130 0.00 0.00 0.00 3.36
982 1092 5.028549 TGCTTCCATTATCTCAGTTCCTC 57.971 43.478 0.00 0.00 0.00 3.71
983 1093 4.141620 TGCTTCCATTATCTCAGTTCCTCC 60.142 45.833 0.00 0.00 0.00 4.30
984 1094 4.141620 GCTTCCATTATCTCAGTTCCTCCA 60.142 45.833 0.00 0.00 0.00 3.86
985 1095 5.359194 TTCCATTATCTCAGTTCCTCCAC 57.641 43.478 0.00 0.00 0.00 4.02
1311 1424 4.446371 CCTTCACAAGCGGATCTAATCTT 58.554 43.478 0.00 0.00 0.00 2.40
1487 1600 0.813184 GATTACCCGACCGACACTCA 59.187 55.000 0.00 0.00 0.00 3.41
1523 1636 1.842562 CCTCAGGATCACCCACAAGAT 59.157 52.381 0.00 0.00 37.41 2.40
1530 1643 1.138036 CACCCACAAGATGCATGCG 59.862 57.895 14.09 0.00 0.00 4.73
1591 1704 1.697432 CCCCGGGCAACTTCTCATATA 59.303 52.381 17.73 0.00 0.00 0.86
1632 1745 1.260561 CGGCAGCGTATTACATGGAAC 59.739 52.381 0.00 0.00 0.00 3.62
1668 1781 1.653151 GGCGAAGTCTGGTATGGAAC 58.347 55.000 0.00 0.00 0.00 3.62
1733 1846 8.458843 GTCCACAATTTACTATACACTGCAAAT 58.541 33.333 0.00 0.00 0.00 2.32
1758 1871 1.751924 GGTGATGAGGTCTACGCTTCT 59.248 52.381 0.00 0.00 0.00 2.85
1786 1899 4.846040 ACTACCAGTACCTAGTGTCTCAG 58.154 47.826 0.00 0.00 0.00 3.35
1811 1927 8.754080 AGTAGTGCTAATGAAGATTGACTACTT 58.246 33.333 0.00 0.00 37.26 2.24
1997 2113 4.680440 GCCAAACAACAAACAAGACTGGAT 60.680 41.667 0.00 0.00 0.00 3.41
2040 2156 4.722193 CACCGGATGGAAGCACTT 57.278 55.556 9.46 0.00 39.21 3.16
2091 2207 9.699410 TTAAATATGTCAACCATGAAGATTCCT 57.301 29.630 0.00 0.00 37.30 3.36
2180 2296 2.350102 CGTGCATGGCATATGCTTACAG 60.350 50.000 26.12 13.21 44.79 2.74
2235 2351 7.661536 TGATACTAGGTGCCTATTATGGATC 57.338 40.000 11.35 6.66 28.68 3.36
2249 2365 7.281774 CCTATTATGGATCGGAGATTTGATTGG 59.718 40.741 0.00 0.00 45.12 3.16
2302 5273 6.837471 ACCTCTATATCCGAGTTAATGGAC 57.163 41.667 0.00 0.00 37.02 4.02
2303 5274 5.715753 ACCTCTATATCCGAGTTAATGGACC 59.284 44.000 0.00 0.00 37.02 4.46
2540 5519 9.220767 AGTCTGTAAATCACTACAATCTTTTCC 57.779 33.333 0.00 0.00 31.51 3.13
2584 5564 5.708736 TCCAATTAGAGGGTGCTGATTAA 57.291 39.130 0.00 0.00 0.00 1.40
2697 5700 6.808321 AGGAACAGCCTCTAATACATGTTA 57.192 37.500 2.30 0.00 46.97 2.41
2715 5718 3.895041 TGTTACAGACATCTGAGGTGTCA 59.105 43.478 26.04 4.46 46.46 3.58
2797 5802 5.543020 TCTGATCTCAGTCAATGCATAGGAT 59.457 40.000 0.00 0.00 44.12 3.24
2826 5831 1.817099 CTCACATGGGCGGAAGAGC 60.817 63.158 0.00 0.00 0.00 4.09
2949 6038 6.128282 ACAAGTTCGTACAATCCATGTCAATC 60.128 38.462 0.00 0.00 42.70 2.67
4064 7687 7.273320 ACTGATTATCCTTCAATTGATGCTG 57.727 36.000 9.40 0.45 0.00 4.41
4331 7954 7.375834 GCACATAGTAAGTGGTATACTGCATA 58.624 38.462 7.58 0.00 40.26 3.14
4540 8190 3.328050 ACTTCCCCAGCATTATAGCCTAC 59.672 47.826 0.00 0.00 34.23 3.18
4707 8564 6.534079 GCTCACTTAATGAAACTATACGGTGT 59.466 38.462 0.00 0.00 36.69 4.16
4749 8610 1.120184 TTCAAGGCAGCCCAAATGCA 61.120 50.000 8.22 0.00 45.68 3.96
4909 8770 7.864108 AATAACATGAGCATTACAGCACTAA 57.136 32.000 0.00 0.00 36.85 2.24
4946 15889 0.041312 GCAGTGCCGTGTGTACTTTG 60.041 55.000 2.85 0.00 37.89 2.77
4975 15918 7.125792 ACTGTATACTGGATAAGAAACTGGG 57.874 40.000 13.58 0.00 0.00 4.45
4980 15925 9.274206 GTATACTGGATAAGAAACTGGGATTTC 57.726 37.037 0.00 0.00 38.62 2.17
5040 15997 1.442886 ATTTCAACCCCAGGAGCCCA 61.443 55.000 0.00 0.00 0.00 5.36
5062 16023 1.558756 AGCAAATGGGAGAGGTCTCAG 59.441 52.381 9.20 0.00 44.60 3.35
5069 16030 1.822371 GGGAGAGGTCTCAGTGTTCTC 59.178 57.143 9.20 0.00 44.60 2.87
5108 16070 6.334989 TCAGCAAGAATTTTGGATGCATAAG 58.665 36.000 0.00 0.00 39.42 1.73
5113 16075 7.546667 GCAAGAATTTTGGATGCATAAGAGAAA 59.453 33.333 0.00 0.00 37.00 2.52
5128 16090 5.515797 AAGAGAAAGCAAGTTAACCAACC 57.484 39.130 0.88 0.00 35.05 3.77
5129 16091 4.532834 AGAGAAAGCAAGTTAACCAACCA 58.467 39.130 0.88 0.00 35.05 3.67
5130 16092 4.953579 AGAGAAAGCAAGTTAACCAACCAA 59.046 37.500 0.88 0.00 35.05 3.67
5131 16093 5.598417 AGAGAAAGCAAGTTAACCAACCAAT 59.402 36.000 0.88 0.00 35.05 3.16
5139 16102 7.555914 AGCAAGTTAACCAACCAATTGAAATTT 59.444 29.630 7.12 0.00 38.15 1.82
5151 16114 7.203910 ACCAATTGAAATTTTGTACGCTTACA 58.796 30.769 7.12 0.00 36.36 2.41
5152 16115 7.381139 ACCAATTGAAATTTTGTACGCTTACAG 59.619 33.333 7.12 0.00 39.44 2.74
5245 17482 6.010850 AGGTTCCTTTCAAGGGATAAAAGAC 58.989 40.000 5.73 0.00 46.47 3.01
5252 17489 4.079253 TCAAGGGATAAAAGACAACTGCC 58.921 43.478 0.00 0.00 0.00 4.85
5259 17496 2.422276 AAAGACAACTGCCGATTTGC 57.578 45.000 0.00 0.00 0.00 3.68
5260 17497 0.238289 AAGACAACTGCCGATTTGCG 59.762 50.000 0.00 0.00 40.47 4.85
5326 17576 4.202111 GCATTTCCACAAACACCTTGTACT 60.202 41.667 0.00 0.00 46.91 2.73
5334 17584 4.634443 ACAAACACCTTGTACTCACAACTC 59.366 41.667 0.00 0.00 46.75 3.01
5336 17586 4.060038 ACACCTTGTACTCACAACTCTG 57.940 45.455 0.00 0.00 39.75 3.35
5342 17592 3.491342 TGTACTCACAACTCTGAGCTCT 58.509 45.455 16.19 0.00 41.38 4.09
5360 17610 0.463295 CTCTGCTCACGGGCATCATT 60.463 55.000 0.00 0.00 41.63 2.57
5367 17632 1.134551 TCACGGGCATCATTCATCGAA 60.135 47.619 0.00 0.00 0.00 3.71
5368 17633 1.262417 CACGGGCATCATTCATCGAAG 59.738 52.381 0.00 0.00 0.00 3.79
5369 17634 1.138859 ACGGGCATCATTCATCGAAGA 59.861 47.619 0.00 0.00 45.75 2.87
5371 17636 2.564771 GGGCATCATTCATCGAAGACA 58.435 47.619 0.00 0.00 42.51 3.41
5372 17637 2.945008 GGGCATCATTCATCGAAGACAA 59.055 45.455 0.00 0.00 42.51 3.18
5373 17638 3.242870 GGGCATCATTCATCGAAGACAAC 60.243 47.826 0.00 0.00 42.51 3.32
5375 17640 3.624861 GCATCATTCATCGAAGACAACCT 59.375 43.478 0.00 0.00 42.51 3.50
5376 17641 4.260538 GCATCATTCATCGAAGACAACCTC 60.261 45.833 0.00 0.00 42.51 3.85
5377 17642 3.511699 TCATTCATCGAAGACAACCTCG 58.488 45.455 0.00 0.00 42.51 4.63
5378 17643 2.363788 TTCATCGAAGACAACCTCGG 57.636 50.000 0.00 0.00 42.51 4.63
5417 17696 3.715628 AATTCGCATCAAATAGGGTGC 57.284 42.857 0.00 0.00 0.00 5.01
5432 17711 3.744660 AGGGTGCAAGAAACAACTAGAG 58.255 45.455 0.00 0.00 0.00 2.43
5436 17715 4.212214 GGTGCAAGAAACAACTAGAGAGTG 59.788 45.833 0.00 0.00 35.52 3.51
5441 17720 4.573900 AGAAACAACTAGAGAGTGGCATG 58.426 43.478 0.00 0.00 35.52 4.06
5443 17722 1.065854 ACAACTAGAGAGTGGCATGGC 60.066 52.381 13.29 13.29 35.52 4.40
5587 17889 1.470098 GTACTGGCTGCCAAATGTGAG 59.530 52.381 23.51 11.43 30.80 3.51
5693 18025 2.574399 GTCGACCAGACCAGCTCC 59.426 66.667 3.51 0.00 43.95 4.70
5735 18069 3.568538 CTTTCGGCTTTCTTTGGTGATG 58.431 45.455 0.00 0.00 0.00 3.07
5736 18070 2.559698 TCGGCTTTCTTTGGTGATGA 57.440 45.000 0.00 0.00 0.00 2.92
5737 18071 3.071874 TCGGCTTTCTTTGGTGATGAT 57.928 42.857 0.00 0.00 0.00 2.45
5745 18079 0.331278 TTTGGTGATGATTCGGCCCT 59.669 50.000 0.00 0.00 0.00 5.19
5808 18156 5.062308 CCACGCAGTTCTCTATCTGTTTAAC 59.938 44.000 0.00 0.00 41.61 2.01
5809 18157 5.062308 CACGCAGTTCTCTATCTGTTTAACC 59.938 44.000 0.00 0.00 41.61 2.85
5810 18158 5.168569 CGCAGTTCTCTATCTGTTTAACCA 58.831 41.667 0.00 0.00 34.57 3.67
5811 18159 5.812642 CGCAGTTCTCTATCTGTTTAACCAT 59.187 40.000 0.00 0.00 34.57 3.55
5812 18160 6.313905 CGCAGTTCTCTATCTGTTTAACCATT 59.686 38.462 0.00 0.00 34.57 3.16
5813 18161 7.464710 CGCAGTTCTCTATCTGTTTAACCATTC 60.465 40.741 0.00 0.00 34.57 2.67
5814 18162 7.334421 GCAGTTCTCTATCTGTTTAACCATTCA 59.666 37.037 0.00 0.00 34.57 2.57
5815 18163 8.660373 CAGTTCTCTATCTGTTTAACCATTCAC 58.340 37.037 0.00 0.00 0.00 3.18
5816 18164 7.824779 AGTTCTCTATCTGTTTAACCATTCACC 59.175 37.037 0.00 0.00 0.00 4.02
5817 18165 6.650120 TCTCTATCTGTTTAACCATTCACCC 58.350 40.000 0.00 0.00 0.00 4.61
5818 18166 5.751586 TCTATCTGTTTAACCATTCACCCC 58.248 41.667 0.00 0.00 0.00 4.95
5819 18167 4.675063 ATCTGTTTAACCATTCACCCCT 57.325 40.909 0.00 0.00 0.00 4.79
5820 18168 4.028993 TCTGTTTAACCATTCACCCCTC 57.971 45.455 0.00 0.00 0.00 4.30
5821 18169 3.396276 TCTGTTTAACCATTCACCCCTCA 59.604 43.478 0.00 0.00 0.00 3.86
5822 18170 4.141135 TCTGTTTAACCATTCACCCCTCAA 60.141 41.667 0.00 0.00 0.00 3.02
5823 18171 4.547671 TGTTTAACCATTCACCCCTCAAA 58.452 39.130 0.00 0.00 0.00 2.69
5824 18172 4.962995 TGTTTAACCATTCACCCCTCAAAA 59.037 37.500 0.00 0.00 0.00 2.44
5825 18173 5.425539 TGTTTAACCATTCACCCCTCAAAAA 59.574 36.000 0.00 0.00 0.00 1.94
5849 18197 5.933187 AAAATCCGTTTAAACCATTTGCC 57.067 34.783 17.51 0.00 0.00 4.52
5850 18198 3.603158 ATCCGTTTAAACCATTTGCCC 57.397 42.857 12.66 0.00 0.00 5.36
5851 18199 1.619332 TCCGTTTAAACCATTTGCCCC 59.381 47.619 12.66 0.00 0.00 5.80
5852 18200 1.621317 CCGTTTAAACCATTTGCCCCT 59.379 47.619 12.66 0.00 0.00 4.79
5853 18201 2.037902 CCGTTTAAACCATTTGCCCCTT 59.962 45.455 12.66 0.00 0.00 3.95
5854 18202 3.258622 CCGTTTAAACCATTTGCCCCTTA 59.741 43.478 12.66 0.00 0.00 2.69
5855 18203 4.262506 CCGTTTAAACCATTTGCCCCTTAA 60.263 41.667 12.66 0.00 0.00 1.85
5856 18204 5.298347 CGTTTAAACCATTTGCCCCTTAAA 58.702 37.500 12.66 0.00 0.00 1.52
5857 18205 5.758784 CGTTTAAACCATTTGCCCCTTAAAA 59.241 36.000 12.66 0.00 0.00 1.52
5858 18206 6.260271 CGTTTAAACCATTTGCCCCTTAAAAA 59.740 34.615 12.66 0.00 0.00 1.94
5859 18207 7.519168 CGTTTAAACCATTTGCCCCTTAAAAAG 60.519 37.037 12.66 0.00 0.00 2.27
5860 18208 5.638530 AAACCATTTGCCCCTTAAAAAGA 57.361 34.783 0.00 0.00 0.00 2.52
5861 18209 5.638530 AACCATTTGCCCCTTAAAAAGAA 57.361 34.783 0.00 0.00 0.00 2.52
5862 18210 5.638530 ACCATTTGCCCCTTAAAAAGAAA 57.361 34.783 0.00 0.00 0.00 2.52
5863 18211 5.373222 ACCATTTGCCCCTTAAAAAGAAAC 58.627 37.500 0.00 0.00 0.00 2.78
5864 18212 5.131977 ACCATTTGCCCCTTAAAAAGAAACT 59.868 36.000 0.00 0.00 0.00 2.66
5865 18213 5.469760 CCATTTGCCCCTTAAAAAGAAACTG 59.530 40.000 0.00 0.00 0.00 3.16
5866 18214 5.685520 TTTGCCCCTTAAAAAGAAACTGT 57.314 34.783 0.00 0.00 0.00 3.55
5867 18215 5.685520 TTGCCCCTTAAAAAGAAACTGTT 57.314 34.783 0.00 0.00 0.00 3.16
5868 18216 5.685520 TGCCCCTTAAAAAGAAACTGTTT 57.314 34.783 5.29 5.29 0.00 2.83
5869 18217 6.793505 TGCCCCTTAAAAAGAAACTGTTTA 57.206 33.333 5.64 0.00 0.00 2.01
5870 18218 7.184067 TGCCCCTTAAAAAGAAACTGTTTAA 57.816 32.000 5.64 0.00 33.66 1.52
5871 18219 7.621796 TGCCCCTTAAAAAGAAACTGTTTAAA 58.378 30.769 5.64 0.00 34.15 1.52
5872 18220 7.549842 TGCCCCTTAAAAAGAAACTGTTTAAAC 59.450 33.333 11.54 11.54 34.15 2.01
5873 18221 7.011669 GCCCCTTAAAAAGAAACTGTTTAAACC 59.988 37.037 15.59 0.00 34.15 3.27
5874 18222 8.041919 CCCCTTAAAAAGAAACTGTTTAAACCA 58.958 33.333 15.59 3.48 34.15 3.67
5875 18223 9.607988 CCCTTAAAAAGAAACTGTTTAAACCAT 57.392 29.630 15.59 0.84 34.15 3.55
5907 18255 9.844790 TCTCAGAATAGCACATTTTAAATGTTG 57.155 29.630 19.27 13.48 0.00 3.33
5908 18256 8.984891 TCAGAATAGCACATTTTAAATGTTGG 57.015 30.769 19.27 11.25 0.00 3.77
5909 18257 8.801299 TCAGAATAGCACATTTTAAATGTTGGA 58.199 29.630 19.27 8.71 0.00 3.53
5910 18258 9.421806 CAGAATAGCACATTTTAAATGTTGGAA 57.578 29.630 19.27 7.31 0.00 3.53
5911 18259 9.995003 AGAATAGCACATTTTAAATGTTGGAAA 57.005 25.926 19.27 5.77 0.00 3.13
5916 18264 9.949174 AGCACATTTTAAATGTTGGAAAAATTC 57.051 25.926 19.27 2.81 30.97 2.17
5917 18265 9.949174 GCACATTTTAAATGTTGGAAAAATTCT 57.051 25.926 19.27 0.00 30.97 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.752354 TGTATAAGTTGCACACATGGGC 59.248 45.455 0.00 0.00 46.69 5.36
16 17 2.565841 GCTGGGGCAACTCTGTATAAG 58.434 52.381 0.00 0.00 38.49 1.73
31 32 1.105759 GCTAAGATGGCAAGGCTGGG 61.106 60.000 0.00 0.00 0.00 4.45
32 33 0.394762 TGCTAAGATGGCAAGGCTGG 60.395 55.000 0.00 0.00 36.71 4.85
58 59 3.433598 GGAGGTGAAAGCACAGCCATATA 60.434 47.826 0.00 0.00 46.96 0.86
59 60 2.648059 GAGGTGAAAGCACAGCCATAT 58.352 47.619 0.00 0.00 46.96 1.78
60 61 1.340017 GGAGGTGAAAGCACAGCCATA 60.340 52.381 0.00 0.00 46.96 2.74
61 62 0.610232 GGAGGTGAAAGCACAGCCAT 60.610 55.000 0.00 0.00 46.96 4.40
65 66 0.397941 TGGAGGAGGTGAAAGCACAG 59.602 55.000 0.00 0.00 46.96 3.66
108 109 9.229784 GAGTGCATTTCTTGTATCATAAATGTG 57.770 33.333 0.00 0.00 40.05 3.21
121 122 3.909776 TTGCTCAGAGTGCATTTCTTG 57.090 42.857 0.00 0.00 40.34 3.02
153 154 9.007901 GGATGTTTAGCTTTCTATGCATCTATT 57.992 33.333 0.19 0.00 36.98 1.73
157 158 6.874288 AGGATGTTTAGCTTTCTATGCATC 57.126 37.500 0.19 0.00 36.57 3.91
167 168 5.385198 TCACCTGAAAAGGATGTTTAGCTT 58.615 37.500 0.00 0.00 0.00 3.74
274 307 3.763360 TGCCAGCTATGCATTTAAGTGTT 59.237 39.130 3.54 0.00 32.85 3.32
375 408 2.092323 GATGTACAAAGGGGCCTTGTC 58.908 52.381 13.81 7.52 36.26 3.18
444 477 9.683069 GACAGATCAGCTCATTAAAAAGAAAAA 57.317 29.630 0.00 0.00 0.00 1.94
446 479 7.448161 TGGACAGATCAGCTCATTAAAAAGAAA 59.552 33.333 0.00 0.00 0.00 2.52
448 481 6.475504 TGGACAGATCAGCTCATTAAAAAGA 58.524 36.000 0.00 0.00 0.00 2.52
452 485 5.748402 ACATGGACAGATCAGCTCATTAAA 58.252 37.500 0.00 0.00 0.00 1.52
494 527 9.665719 TCAGCTATTGTTTGATCATGTAAACTA 57.334 29.630 17.28 12.99 37.60 2.24
505 538 5.163581 GGACTTGCATCAGCTATTGTTTGAT 60.164 40.000 0.00 0.00 42.74 2.57
517 550 2.133281 TCCCATTGGACTTGCATCAG 57.867 50.000 3.62 0.00 35.03 2.90
584 618 9.292195 TCTATCTGTTGACCGTATACATATGAA 57.708 33.333 10.38 0.00 0.00 2.57
603 637 7.806690 TGTTTTTCTTGGAACGAATCTATCTG 58.193 34.615 0.00 0.00 0.00 2.90
610 644 7.230712 ACCTTAGATGTTTTTCTTGGAACGAAT 59.769 33.333 0.00 0.00 0.00 3.34
635 669 5.239087 TCTTGTTCCGGTTTTGGTATGTAAC 59.761 40.000 0.00 0.00 0.00 2.50
685 758 7.624360 TGCTGGTACTATTTTAGTTGGATTG 57.376 36.000 0.00 0.00 40.14 2.67
719 792 4.137543 ACTGCTAGGTTTCCTTGTTTGAG 58.862 43.478 0.00 0.00 34.61 3.02
729 802 2.037251 TGAGGTGTGACTGCTAGGTTTC 59.963 50.000 0.00 0.00 0.00 2.78
735 808 4.415881 TTTCTTTGAGGTGTGACTGCTA 57.584 40.909 0.00 0.00 0.00 3.49
932 1041 6.350445 GCAGTGGATGAGTTATTTTTGGACAT 60.350 38.462 0.00 0.00 0.00 3.06
941 1050 4.338879 AGCAAAGCAGTGGATGAGTTATT 58.661 39.130 0.00 0.00 0.00 1.40
981 1091 0.391228 TTGCTGTAGCGAACTGTGGA 59.609 50.000 0.00 0.00 45.83 4.02
982 1092 1.129251 CATTGCTGTAGCGAACTGTGG 59.871 52.381 0.00 0.00 45.83 4.17
983 1093 1.129251 CCATTGCTGTAGCGAACTGTG 59.871 52.381 0.00 0.00 45.83 3.66
984 1094 1.001974 TCCATTGCTGTAGCGAACTGT 59.998 47.619 0.00 0.00 45.83 3.55
985 1095 1.725641 TCCATTGCTGTAGCGAACTG 58.274 50.000 0.00 0.00 45.83 3.16
1167 1280 2.226962 ATTTTGTGCTGGAGCTGGAT 57.773 45.000 0.00 0.00 42.66 3.41
1221 1334 1.339247 ACCCACACAACGTTGTCTTCA 60.339 47.619 30.24 0.00 39.91 3.02
1311 1424 0.179048 CACTGGTGTCTGACAAGGCA 60.179 55.000 12.81 0.00 35.02 4.75
1449 1562 6.756542 GGTAATCGAAGCTTTGCCATAAAATT 59.243 34.615 9.00 4.57 0.00 1.82
1452 1565 4.097286 GGGTAATCGAAGCTTTGCCATAAA 59.903 41.667 9.00 0.00 29.77 1.40
1523 1636 2.869646 GCTGTTGTAGCGCATGCA 59.130 55.556 19.57 1.65 46.23 3.96
1530 1643 7.354141 TCTCCAAGAGATGAGCTGTTGTAGC 62.354 48.000 6.84 0.00 44.15 3.58
1591 1704 1.356124 AACTCATCAGGGTCTGCACT 58.644 50.000 0.00 0.00 0.00 4.40
1632 1745 1.813753 CCGGTATGGTGTTGAGCCG 60.814 63.158 0.00 0.00 38.99 5.52
1668 1781 5.529581 ACTTCCCAACTACCAAATTGTTG 57.470 39.130 0.00 0.00 41.89 3.33
1683 1796 8.783660 ACTTGATACTCTCAATATACTTCCCA 57.216 34.615 0.00 0.00 42.87 4.37
1733 1846 3.704566 AGCGTAGACCTCATCACCAATAA 59.295 43.478 0.00 0.00 0.00 1.40
1786 1899 8.934507 AAGTAGTCAATCTTCATTAGCACTAC 57.065 34.615 0.00 0.00 33.61 2.73
1811 1927 5.645067 CAGATTTGTGTCTTCATCTTGCCTA 59.355 40.000 0.00 0.00 0.00 3.93
1997 2113 2.909965 GTGAAAACCTGCGGGCCA 60.910 61.111 12.89 1.63 35.63 5.36
2040 2156 2.126882 CCATCCCCTTGACCACATCTA 58.873 52.381 0.00 0.00 0.00 1.98
2180 2296 6.382608 TCGATAGCATTAGTTCTCATAGTGC 58.617 40.000 0.00 0.00 36.44 4.40
2235 2351 0.378257 CCGTGCCAATCAAATCTCCG 59.622 55.000 0.00 0.00 0.00 4.63
2249 2365 1.464997 GTCCAATGAACTTCTCCGTGC 59.535 52.381 0.00 0.00 0.00 5.34
2390 5367 7.065085 CACATTGAACATAGAACTAAGGAGGTG 59.935 40.741 0.00 0.00 0.00 4.00
2584 5564 0.917533 ATTCTGCATCCAGTGGCTCT 59.082 50.000 3.51 0.00 40.09 4.09
2697 5700 1.274728 GCTGACACCTCAGATGTCTGT 59.725 52.381 7.82 0.00 46.32 3.41
2715 5718 1.372307 GGCTGGCCAAATGTTTGCT 59.628 52.632 7.01 0.00 36.86 3.91
2772 5777 4.989797 CCTATGCATTGACTGAGATCAGAC 59.010 45.833 16.52 10.74 46.59 3.51
2826 5831 3.561310 CAGGGTGGTATGATTGACATTCG 59.439 47.826 0.00 0.00 40.07 3.34
3617 7218 7.288317 TGTTTGTTGCAAGTACAATTTCTTG 57.712 32.000 0.00 9.21 42.44 3.02
4051 7674 3.825585 TGCTACCAACAGCATCAATTGAA 59.174 39.130 13.09 0.00 46.41 2.69
4269 7892 3.955650 ATTTTCTTGCTGCTGATTGCT 57.044 38.095 0.00 0.00 43.37 3.91
4331 7954 9.153721 CACAGGAACAATGCATAAACATAATTT 57.846 29.630 0.00 0.00 0.00 1.82
4540 8190 6.384178 TTCGAACATGTCATTGTACTTACG 57.616 37.500 0.00 0.00 0.00 3.18
4608 8266 1.755395 GCTCCATGCCTGCATCCAA 60.755 57.895 0.70 0.00 33.90 3.53
4659 8516 1.721389 CTGTCCACAATTGACGAGTCG 59.279 52.381 13.59 11.85 35.46 4.18
4707 8564 3.096852 ACACAAGAGACCGATATGGACA 58.903 45.455 0.00 0.00 42.00 4.02
4749 8610 4.338539 GACGACACGAGTGGCCGT 62.339 66.667 19.68 19.68 42.99 5.68
5040 15997 1.280421 GAGACCTCTCCCATTTGCTGT 59.720 52.381 0.00 0.00 37.02 4.40
5062 16023 6.231211 TGAGAAGGGTCTTTAATGAGAACAC 58.769 40.000 0.00 0.00 35.00 3.32
5069 16030 5.248640 TCTTGCTGAGAAGGGTCTTTAATG 58.751 41.667 0.00 0.00 32.80 1.90
5108 16070 4.911514 TGGTTGGTTAACTTGCTTTCTC 57.088 40.909 5.42 0.00 36.99 2.87
5113 16075 5.606348 TTCAATTGGTTGGTTAACTTGCT 57.394 34.783 5.42 0.00 36.99 3.91
5128 16090 8.500837 TCTGTAAGCGTACAAAATTTCAATTG 57.499 30.769 13.53 0.00 39.75 2.32
5129 16091 9.522804 TTTCTGTAAGCGTACAAAATTTCAATT 57.477 25.926 13.53 0.00 39.75 2.32
5130 16092 9.522804 TTTTCTGTAAGCGTACAAAATTTCAAT 57.477 25.926 13.53 0.00 39.75 2.57
5131 16093 8.912787 TTTTCTGTAAGCGTACAAAATTTCAA 57.087 26.923 13.53 0.00 39.75 2.69
5139 16102 6.694447 ACTATCCTTTTCTGTAAGCGTACAA 58.306 36.000 13.53 2.84 39.75 2.41
5178 16835 4.460034 AGACATACTGCATGCAAAATGTCA 59.540 37.500 41.24 22.21 43.34 3.58
5179 16836 4.796830 CAGACATACTGCATGCAAAATGTC 59.203 41.667 38.09 38.09 42.39 3.06
5326 17576 1.271934 GCAGAGAGCTCAGAGTTGTGA 59.728 52.381 17.77 0.00 41.15 3.58
5360 17610 0.108804 GCCGAGGTTGTCTTCGATGA 60.109 55.000 0.00 0.00 44.10 2.92
5368 17633 3.701604 ATCTCGCGCCGAGGTTGTC 62.702 63.158 22.70 0.00 45.59 3.18
5369 17634 3.760035 ATCTCGCGCCGAGGTTGT 61.760 61.111 22.70 9.24 45.59 3.32
5375 17640 1.518572 GGAAGAAATCTCGCGCCGA 60.519 57.895 0.00 0.00 0.00 5.54
5376 17641 1.154205 ATGGAAGAAATCTCGCGCCG 61.154 55.000 0.00 0.00 0.00 6.46
5377 17642 1.017387 AATGGAAGAAATCTCGCGCC 58.983 50.000 0.00 0.00 0.00 6.53
5378 17643 3.944422 TTAATGGAAGAAATCTCGCGC 57.056 42.857 0.00 0.00 0.00 6.86
5417 17696 4.380531 TGCCACTCTCTAGTTGTTTCTTG 58.619 43.478 0.00 0.00 31.97 3.02
5432 17711 0.107508 TGCTCTAAGCCATGCCACTC 60.108 55.000 0.00 0.00 41.51 3.51
5436 17715 2.828128 GCGTGCTCTAAGCCATGCC 61.828 63.158 0.00 0.00 41.51 4.40
5441 17720 0.955919 AAAGGTGCGTGCTCTAAGCC 60.956 55.000 0.00 0.00 41.51 4.35
5443 17722 1.728971 CTCAAAGGTGCGTGCTCTAAG 59.271 52.381 0.00 0.00 0.00 2.18
5587 17889 2.687566 TTCTTCCTCCTCCCGGCC 60.688 66.667 0.00 0.00 0.00 6.13
5826 18174 5.239744 GGGCAAATGGTTTAAACGGATTTTT 59.760 36.000 17.79 9.16 0.00 1.94
5827 18175 4.757657 GGGCAAATGGTTTAAACGGATTTT 59.242 37.500 17.79 10.43 0.00 1.82
5828 18176 4.320023 GGGCAAATGGTTTAAACGGATTT 58.680 39.130 12.07 14.37 0.00 2.17
5829 18177 3.307129 GGGGCAAATGGTTTAAACGGATT 60.307 43.478 12.07 9.70 0.00 3.01
5830 18178 2.235155 GGGGCAAATGGTTTAAACGGAT 59.765 45.455 12.07 4.21 0.00 4.18
5831 18179 1.619332 GGGGCAAATGGTTTAAACGGA 59.381 47.619 12.07 1.93 0.00 4.69
5832 18180 1.621317 AGGGGCAAATGGTTTAAACGG 59.379 47.619 12.07 1.13 0.00 4.44
5833 18181 3.394674 AAGGGGCAAATGGTTTAAACG 57.605 42.857 12.07 0.00 0.00 3.60
5834 18182 7.499563 TCTTTTTAAGGGGCAAATGGTTTAAAC 59.500 33.333 9.98 9.98 0.00 2.01
5835 18183 7.574607 TCTTTTTAAGGGGCAAATGGTTTAAA 58.425 30.769 0.00 0.00 0.00 1.52
5836 18184 7.138054 TCTTTTTAAGGGGCAAATGGTTTAA 57.862 32.000 0.00 0.00 0.00 1.52
5837 18185 6.749036 TCTTTTTAAGGGGCAAATGGTTTA 57.251 33.333 0.00 0.00 0.00 2.01
5838 18186 5.638530 TCTTTTTAAGGGGCAAATGGTTT 57.361 34.783 0.00 0.00 0.00 3.27
5839 18187 5.638530 TTCTTTTTAAGGGGCAAATGGTT 57.361 34.783 0.00 0.00 0.00 3.67
5840 18188 5.131977 AGTTTCTTTTTAAGGGGCAAATGGT 59.868 36.000 0.00 0.00 0.00 3.55
5841 18189 5.469760 CAGTTTCTTTTTAAGGGGCAAATGG 59.530 40.000 0.00 0.00 0.00 3.16
5842 18190 6.054941 ACAGTTTCTTTTTAAGGGGCAAATG 58.945 36.000 0.00 0.00 0.00 2.32
5843 18191 6.247229 ACAGTTTCTTTTTAAGGGGCAAAT 57.753 33.333 0.00 0.00 0.00 2.32
5844 18192 5.685520 ACAGTTTCTTTTTAAGGGGCAAA 57.314 34.783 0.00 0.00 0.00 3.68
5845 18193 5.685520 AACAGTTTCTTTTTAAGGGGCAA 57.314 34.783 0.00 0.00 0.00 4.52
5846 18194 5.685520 AAACAGTTTCTTTTTAAGGGGCA 57.314 34.783 0.00 0.00 0.00 5.36
5847 18195 7.011669 GGTTTAAACAGTTTCTTTTTAAGGGGC 59.988 37.037 19.57 0.00 0.00 5.80
5848 18196 8.041919 TGGTTTAAACAGTTTCTTTTTAAGGGG 58.958 33.333 19.57 0.00 0.00 4.79
5849 18197 9.607988 ATGGTTTAAACAGTTTCTTTTTAAGGG 57.392 29.630 19.57 0.00 0.00 3.95
5881 18229 9.844790 CAACATTTAAAATGTGCTATTCTGAGA 57.155 29.630 0.00 0.00 31.80 3.27
5882 18230 9.079833 CCAACATTTAAAATGTGCTATTCTGAG 57.920 33.333 0.00 0.00 31.80 3.35
5883 18231 8.801299 TCCAACATTTAAAATGTGCTATTCTGA 58.199 29.630 0.00 0.00 31.80 3.27
5884 18232 8.984891 TCCAACATTTAAAATGTGCTATTCTG 57.015 30.769 0.00 0.00 31.80 3.02
5885 18233 9.995003 TTTCCAACATTTAAAATGTGCTATTCT 57.005 25.926 0.00 0.00 31.80 2.40
5890 18238 9.949174 GAATTTTTCCAACATTTAAAATGTGCT 57.051 25.926 0.00 0.00 32.30 4.40
5891 18239 9.949174 AGAATTTTTCCAACATTTAAAATGTGC 57.051 25.926 0.00 0.00 32.30 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.