Multiple sequence alignment - TraesCS6D01G376500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G376500 chr6D 100.000 3732 0 0 1 3732 459167789 459171520 0.000000e+00 6892.0
1 TraesCS6D01G376500 chr6D 96.831 284 7 2 96 378 365416284 365416566 1.210000e-129 473.0
2 TraesCS6D01G376500 chr6D 84.165 461 39 17 890 1336 459235000 459235440 2.070000e-112 416.0
3 TraesCS6D01G376500 chr6D 81.682 535 53 21 1941 2454 459236514 459237024 1.610000e-108 403.0
4 TraesCS6D01G376500 chr6D 84.615 390 47 9 887 1274 459236105 459236483 3.520000e-100 375.0
5 TraesCS6D01G376500 chr6D 88.442 199 14 6 1736 1931 459169440 459169632 8.060000e-57 231.0
6 TraesCS6D01G376500 chr6D 88.442 199 14 6 1652 1844 459169524 459169719 8.060000e-57 231.0
7 TraesCS6D01G376500 chr6D 100.000 98 0 0 1 98 29683630 29683533 8.230000e-42 182.0
8 TraesCS6D01G376500 chr6D 100.000 98 0 0 1 98 31488184 31488281 8.230000e-42 182.0
9 TraesCS6D01G376500 chr6D 100.000 98 0 0 1 98 58065798 58065701 8.230000e-42 182.0
10 TraesCS6D01G376500 chr6D 84.962 133 17 2 3022 3151 459237719 459237851 8.410000e-27 132.0
11 TraesCS6D01G376500 chr6D 79.121 182 28 7 2799 2979 459237564 459237736 2.360000e-22 117.0
12 TraesCS6D01G376500 chr6D 78.873 142 21 6 1441 1582 459235566 459235698 1.850000e-13 87.9
13 TraesCS6D01G376500 chr6D 94.737 38 1 1 2479 2516 471540045 471540009 1.450000e-04 58.4
14 TraesCS6D01G376500 chr6B 94.118 1462 34 21 396 1844 698808317 698809739 0.000000e+00 2176.0
15 TraesCS6D01G376500 chr6B 95.586 1314 20 8 1736 3017 698445113 698443806 0.000000e+00 2071.0
16 TraesCS6D01G376500 chr6B 95.586 1314 20 8 1736 3017 698809545 698810852 0.000000e+00 2071.0
17 TraesCS6D01G376500 chr6B 96.667 870 18 7 986 1850 698445776 698444913 0.000000e+00 1435.0
18 TraesCS6D01G376500 chr6B 97.806 547 10 2 2991 3535 698443864 698443318 0.000000e+00 942.0
19 TraesCS6D01G376500 chr6B 97.806 547 10 2 2991 3535 698810794 698811340 0.000000e+00 942.0
20 TraesCS6D01G376500 chr6B 89.324 562 22 15 599 1154 698455510 698454981 0.000000e+00 671.0
21 TraesCS6D01G376500 chr6B 93.051 331 13 6 399 726 698446144 698445821 3.370000e-130 475.0
22 TraesCS6D01G376500 chr6B 85.856 403 31 13 890 1286 698957929 698958311 4.490000e-109 405.0
23 TraesCS6D01G376500 chr6B 85.934 391 40 11 887 1274 698958994 698959372 1.610000e-108 403.0
24 TraesCS6D01G376500 chr6B 80.827 532 63 21 1941 2454 698959403 698959913 7.560000e-102 381.0
25 TraesCS6D01G376500 chr6B 96.491 228 7 1 374 601 698462156 698461930 3.520000e-100 375.0
26 TraesCS6D01G376500 chr6B 96.985 199 4 2 3535 3732 698443284 698443087 2.150000e-87 333.0
27 TraesCS6D01G376500 chr6B 96.985 199 4 2 3535 3732 698811374 698811571 2.150000e-87 333.0
28 TraesCS6D01G376500 chr6B 91.083 157 14 0 390 546 698469744 698469588 2.920000e-51 213.0
29 TraesCS6D01G376500 chr6B 90.446 157 15 0 390 546 698450493 698450337 1.360000e-49 207.0
30 TraesCS6D01G376500 chr6B 90.446 157 15 0 390 546 698803985 698804141 1.360000e-49 207.0
31 TraesCS6D01G376500 chr6B 86.301 146 20 0 997 1142 707203101 707202956 3.860000e-35 159.0
32 TraesCS6D01G376500 chr6B 81.421 183 20 9 2799 2978 698960482 698960653 1.810000e-28 137.0
33 TraesCS6D01G376500 chr6B 85.827 127 15 2 3025 3151 707201353 707201230 8.410000e-27 132.0
34 TraesCS6D01G376500 chr6B 90.625 96 9 0 390 485 698475223 698475128 1.090000e-25 128.0
35 TraesCS6D01G376500 chr6B 90.625 96 9 0 390 485 698799133 698799228 1.090000e-25 128.0
36 TraesCS6D01G376500 chr6B 88.119 101 10 1 537 637 93907758 93907856 6.550000e-23 119.0
37 TraesCS6D01G376500 chr6B 93.651 63 0 1 3022 3080 698960637 698960699 1.430000e-14 91.6
38 TraesCS6D01G376500 chr3D 97.173 283 7 1 96 378 174930531 174930250 9.380000e-131 477.0
39 TraesCS6D01G376500 chr3D 88.889 63 4 2 576 637 571924278 571924218 1.440000e-09 75.0
40 TraesCS6D01G376500 chr3D 97.368 38 0 1 2479 2516 483176035 483176071 3.110000e-06 63.9
41 TraesCS6D01G376500 chr3D 97.059 34 0 1 2476 2508 303594706 303594739 5.210000e-04 56.5
42 TraesCS6D01G376500 chr7D 96.831 284 7 2 96 378 622676187 622675905 1.210000e-129 473.0
43 TraesCS6D01G376500 chr7D 88.571 105 9 2 537 641 412475178 412475279 1.410000e-24 124.0
44 TraesCS6D01G376500 chr7D 97.368 38 0 1 2479 2516 6817265 6817229 3.110000e-06 63.9
45 TraesCS6D01G376500 chr4D 96.516 287 8 2 96 382 318274779 318275063 1.210000e-129 473.0
46 TraesCS6D01G376500 chr4D 90.196 51 4 1 2473 2523 19442602 19442651 8.650000e-07 65.8
47 TraesCS6D01G376500 chr4D 100.000 30 0 0 2479 2508 58159368 58159397 5.210000e-04 56.5
48 TraesCS6D01G376500 chr4D 97.059 34 0 1 2476 2508 112585486 112585519 5.210000e-04 56.5
49 TraesCS6D01G376500 chr5D 96.820 283 8 1 96 378 127921101 127921382 4.360000e-129 472.0
50 TraesCS6D01G376500 chr5D 100.000 99 0 0 1 99 171430718 171430620 2.290000e-42 183.0
51 TraesCS6D01G376500 chr5D 92.188 64 3 2 2453 2516 267848768 267848829 5.130000e-14 89.8
52 TraesCS6D01G376500 chr1D 96.820 283 8 1 96 378 445677190 445677471 4.360000e-129 472.0
53 TraesCS6D01G376500 chr1D 90.476 105 7 2 537 641 131630312 131630211 6.500000e-28 135.0
54 TraesCS6D01G376500 chr1D 94.030 67 4 0 576 642 451979940 451980006 6.590000e-18 102.0
55 TraesCS6D01G376500 chr1D 92.683 41 2 1 2476 2516 84711215 84711254 1.450000e-04 58.4
56 TraesCS6D01G376500 chr1D 100.000 30 0 0 2479 2508 54014290 54014319 5.210000e-04 56.5
57 TraesCS6D01G376500 chr4B 96.491 285 8 1 95 379 113421229 113420947 1.570000e-128 470.0
58 TraesCS6D01G376500 chr4B 100.000 99 0 0 1 99 525081092 525080994 2.290000e-42 183.0
59 TraesCS6D01G376500 chr4B 92.063 63 3 2 576 637 610119614 610119553 1.850000e-13 87.9
60 TraesCS6D01G376500 chr4B 91.935 62 3 1 568 629 255389038 255388979 6.640000e-13 86.1
61 TraesCS6D01G376500 chr4B 97.368 38 0 1 2479 2516 19987497 19987533 3.110000e-06 63.9
62 TraesCS6D01G376500 chr2D 96.194 289 8 3 96 383 39763880 39763594 1.570000e-128 470.0
63 TraesCS6D01G376500 chr2D 87.912 91 6 4 553 642 2147793 2147707 6.590000e-18 102.0
64 TraesCS6D01G376500 chrUn 95.286 297 10 4 96 391 96932375 96932668 5.640000e-128 468.0
65 TraesCS6D01G376500 chrUn 100.000 98 0 0 1 98 43680021 43680118 8.230000e-42 182.0
66 TraesCS6D01G376500 chrUn 100.000 98 0 0 1 98 475048325 475048228 8.230000e-42 182.0
67 TraesCS6D01G376500 chrUn 75.741 371 59 17 2590 2949 281038305 281037955 1.390000e-34 158.0
68 TraesCS6D01G376500 chrUn 82.822 163 18 3 991 1144 281041308 281041147 1.810000e-28 137.0
69 TraesCS6D01G376500 chr7B 100.000 99 0 0 1 99 298027871 298027773 2.290000e-42 183.0
70 TraesCS6D01G376500 chr7B 87.736 106 11 1 537 642 682379612 682379509 5.060000e-24 122.0
71 TraesCS6D01G376500 chr7B 85.149 101 13 1 537 637 580874511 580874609 6.590000e-18 102.0
72 TraesCS6D01G376500 chr2A 100.000 99 0 0 1 99 326018948 326018850 2.290000e-42 183.0
73 TraesCS6D01G376500 chr7A 87.963 108 10 2 537 644 51464325 51464429 1.410000e-24 124.0
74 TraesCS6D01G376500 chr6A 86.792 106 9 4 537 641 594681 594782 3.050000e-21 113.0
75 TraesCS6D01G376500 chr3A 86.792 106 9 4 537 641 724709799 724709900 3.050000e-21 113.0
76 TraesCS6D01G376500 chr5A 89.011 91 7 2 552 642 450506702 450506615 3.940000e-20 110.0
77 TraesCS6D01G376500 chr5A 97.368 38 0 1 2479 2516 609874649 609874685 3.110000e-06 63.9
78 TraesCS6D01G376500 chr5B 92.188 64 3 2 2453 2516 303226422 303226483 5.130000e-14 89.8
79 TraesCS6D01G376500 chr1B 92.063 63 3 2 576 637 114487099 114487160 1.850000e-13 87.9
80 TraesCS6D01G376500 chr1B 91.837 49 2 2 2469 2516 510601300 510601253 2.410000e-07 67.6
81 TraesCS6D01G376500 chr1A 83.117 77 9 3 537 609 546796154 546796230 2.410000e-07 67.6
82 TraesCS6D01G376500 chr1A 97.059 34 0 1 2479 2511 53468805 53468838 5.210000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G376500 chr6D 459167789 459171520 3731 False 2451.333333 6892 92.294667 1 3732 3 chr6D.!!$F3 3731
1 TraesCS6D01G376500 chr6D 459235000 459237851 2851 False 255.150000 416 82.236333 887 3151 6 chr6D.!!$F4 2264
2 TraesCS6D01G376500 chr6B 698808317 698811571 3254 False 1380.500000 2176 96.123750 396 3732 4 chr6B.!!$F4 3336
3 TraesCS6D01G376500 chr6B 698443087 698446144 3057 True 1051.200000 2071 96.019000 399 3732 5 chr6B.!!$R6 3333
4 TraesCS6D01G376500 chr6B 698454981 698455510 529 True 671.000000 671 89.324000 599 1154 1 chr6B.!!$R2 555
5 TraesCS6D01G376500 chr6B 698957929 698960699 2770 False 283.520000 405 85.537800 887 3080 5 chr6B.!!$F5 2193

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.035725 CCCACCTTAACCGGGAACTC 60.036 60.0 6.32 0.0 43.21 3.01 F
115 116 0.035725 CCACCTTAACCGGGAACTCC 60.036 60.0 6.32 0.0 0.00 3.85 F
152 153 0.038526 CTCGCTTCTACCACGGTGTT 60.039 55.0 7.45 0.0 0.00 3.32 F
268 269 0.043334 AGTAGGAGCCCACCACATCT 59.957 55.0 0.00 0.0 0.00 2.90 F
961 971 0.252197 ACCCAAACCCTAGCATCGTC 59.748 55.0 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1753 1858 0.038983 TGTAACAGCTAGCGCGTCAA 60.039 50.0 9.55 0.58 42.32 3.18 R
1755 1860 0.179171 TCTGTAACAGCTAGCGCGTC 60.179 55.0 9.55 0.00 42.32 5.19 R
1756 1861 0.456221 ATCTGTAACAGCTAGCGCGT 59.544 50.0 9.55 8.10 42.32 6.01 R
1757 1862 1.124462 GATCTGTAACAGCTAGCGCG 58.876 55.0 9.55 0.00 42.32 6.86 R
2788 3922 0.886490 CCACAACCAGAGTGCTCACC 60.886 60.0 1.82 0.00 35.69 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.706100 CTCTATGGAGGTAATACCCTACTTC 57.294 44.000 5.71 0.00 39.75 3.01
25 26 6.559429 TCTATGGAGGTAATACCCTACTTCC 58.441 44.000 5.71 6.77 44.47 3.46
26 27 4.913154 TGGAGGTAATACCCTACTTCCT 57.087 45.455 13.63 0.00 44.50 3.36
27 28 4.553678 TGGAGGTAATACCCTACTTCCTG 58.446 47.826 13.63 0.00 44.50 3.86
28 29 3.324268 GGAGGTAATACCCTACTTCCTGC 59.676 52.174 5.71 0.00 42.18 4.85
29 30 4.224762 GAGGTAATACCCTACTTCCTGCT 58.775 47.826 5.71 0.00 39.75 4.24
30 31 4.632292 AGGTAATACCCTACTTCCTGCTT 58.368 43.478 5.71 0.00 39.75 3.91
31 32 4.409247 AGGTAATACCCTACTTCCTGCTTG 59.591 45.833 5.71 0.00 39.75 4.01
32 33 4.407945 GGTAATACCCTACTTCCTGCTTGA 59.592 45.833 0.00 0.00 30.04 3.02
33 34 5.071923 GGTAATACCCTACTTCCTGCTTGAT 59.928 44.000 0.00 0.00 30.04 2.57
34 35 5.717119 AATACCCTACTTCCTGCTTGATT 57.283 39.130 0.00 0.00 0.00 2.57
35 36 3.356529 ACCCTACTTCCTGCTTGATTG 57.643 47.619 0.00 0.00 0.00 2.67
36 37 2.912956 ACCCTACTTCCTGCTTGATTGA 59.087 45.455 0.00 0.00 0.00 2.57
37 38 3.525199 ACCCTACTTCCTGCTTGATTGAT 59.475 43.478 0.00 0.00 0.00 2.57
38 39 4.133078 CCCTACTTCCTGCTTGATTGATC 58.867 47.826 0.00 0.00 0.00 2.92
39 40 4.141528 CCCTACTTCCTGCTTGATTGATCT 60.142 45.833 0.00 0.00 0.00 2.75
40 41 5.435291 CCTACTTCCTGCTTGATTGATCTT 58.565 41.667 0.00 0.00 0.00 2.40
41 42 5.296283 CCTACTTCCTGCTTGATTGATCTTG 59.704 44.000 0.00 0.00 0.00 3.02
42 43 4.914983 ACTTCCTGCTTGATTGATCTTGA 58.085 39.130 0.00 0.00 0.00 3.02
43 44 5.507637 ACTTCCTGCTTGATTGATCTTGAT 58.492 37.500 0.00 0.00 0.00 2.57
44 45 5.357314 ACTTCCTGCTTGATTGATCTTGATG 59.643 40.000 0.00 0.00 0.00 3.07
45 46 5.106876 TCCTGCTTGATTGATCTTGATGA 57.893 39.130 0.00 0.00 0.00 2.92
46 47 5.503002 TCCTGCTTGATTGATCTTGATGAA 58.497 37.500 0.00 0.00 0.00 2.57
47 48 6.127101 TCCTGCTTGATTGATCTTGATGAAT 58.873 36.000 0.00 0.00 0.00 2.57
48 49 7.284820 TCCTGCTTGATTGATCTTGATGAATA 58.715 34.615 0.00 0.00 0.00 1.75
49 50 7.942894 TCCTGCTTGATTGATCTTGATGAATAT 59.057 33.333 0.00 0.00 0.00 1.28
50 51 8.023706 CCTGCTTGATTGATCTTGATGAATATG 58.976 37.037 0.00 0.00 0.00 1.78
51 52 8.685838 TGCTTGATTGATCTTGATGAATATGA 57.314 30.769 0.00 0.00 0.00 2.15
52 53 8.784043 TGCTTGATTGATCTTGATGAATATGAG 58.216 33.333 0.00 0.00 0.00 2.90
53 54 8.784994 GCTTGATTGATCTTGATGAATATGAGT 58.215 33.333 0.00 0.00 0.00 3.41
74 75 8.589701 TGAGTATTACAAGAGTTGATCTACCA 57.410 34.615 3.54 0.00 37.23 3.25
75 76 8.467598 TGAGTATTACAAGAGTTGATCTACCAC 58.532 37.037 3.54 0.00 37.23 4.16
76 77 7.481642 AGTATTACAAGAGTTGATCTACCACG 58.518 38.462 3.54 0.00 37.23 4.94
77 78 5.970317 TTACAAGAGTTGATCTACCACGA 57.030 39.130 3.54 0.00 37.23 4.35
78 79 4.442375 ACAAGAGTTGATCTACCACGAG 57.558 45.455 3.54 1.07 37.23 4.18
79 80 4.079970 ACAAGAGTTGATCTACCACGAGA 58.920 43.478 3.54 0.00 37.23 4.04
80 81 4.707448 ACAAGAGTTGATCTACCACGAGAT 59.293 41.667 3.54 0.00 37.23 2.75
96 97 4.710528 CGAGATCGTAATGGCTAAAACC 57.289 45.455 0.00 0.00 34.11 3.27
97 98 3.493503 CGAGATCGTAATGGCTAAAACCC 59.506 47.826 0.00 0.00 34.11 4.11
98 99 4.448210 GAGATCGTAATGGCTAAAACCCA 58.552 43.478 0.00 0.00 36.66 4.51
99 100 4.196971 AGATCGTAATGGCTAAAACCCAC 58.803 43.478 0.00 0.00 34.68 4.61
100 101 2.713877 TCGTAATGGCTAAAACCCACC 58.286 47.619 0.00 0.00 34.68 4.61
101 102 2.306512 TCGTAATGGCTAAAACCCACCT 59.693 45.455 0.00 0.00 34.68 4.00
102 103 3.086282 CGTAATGGCTAAAACCCACCTT 58.914 45.455 0.00 0.00 34.68 3.50
103 104 4.019501 TCGTAATGGCTAAAACCCACCTTA 60.020 41.667 0.00 0.00 34.68 2.69
104 105 4.701171 CGTAATGGCTAAAACCCACCTTAA 59.299 41.667 0.00 0.00 34.68 1.85
105 106 5.392272 CGTAATGGCTAAAACCCACCTTAAC 60.392 44.000 0.00 0.00 34.68 2.01
106 107 2.879154 TGGCTAAAACCCACCTTAACC 58.121 47.619 0.00 0.00 0.00 2.85
107 108 1.814394 GGCTAAAACCCACCTTAACCG 59.186 52.381 0.00 0.00 0.00 4.44
108 109 1.814394 GCTAAAACCCACCTTAACCGG 59.186 52.381 0.00 0.00 0.00 5.28
109 110 2.439409 CTAAAACCCACCTTAACCGGG 58.561 52.381 6.32 0.00 46.22 5.73
110 111 0.852155 AAAACCCACCTTAACCGGGA 59.148 50.000 6.32 0.00 43.21 5.14
111 112 0.852155 AAACCCACCTTAACCGGGAA 59.148 50.000 6.32 0.00 43.21 3.97
112 113 0.111061 AACCCACCTTAACCGGGAAC 59.889 55.000 6.32 0.00 43.21 3.62
113 114 0.769386 ACCCACCTTAACCGGGAACT 60.769 55.000 6.32 0.00 43.21 3.01
114 115 0.035725 CCCACCTTAACCGGGAACTC 60.036 60.000 6.32 0.00 43.21 3.01
115 116 0.035725 CCACCTTAACCGGGAACTCC 60.036 60.000 6.32 0.00 0.00 3.85
128 129 2.803956 GGAACTCCCCGAAATTTTCCT 58.196 47.619 3.61 0.00 31.54 3.36
129 130 2.753452 GGAACTCCCCGAAATTTTCCTC 59.247 50.000 3.61 0.00 31.54 3.71
130 131 2.109425 ACTCCCCGAAATTTTCCTCG 57.891 50.000 3.61 0.00 34.83 4.63
131 132 0.733150 CTCCCCGAAATTTTCCTCGC 59.267 55.000 3.61 0.00 33.70 5.03
132 133 0.678684 TCCCCGAAATTTTCCTCGCC 60.679 55.000 3.61 0.00 33.70 5.54
133 134 1.663379 CCCCGAAATTTTCCTCGCCC 61.663 60.000 3.61 0.00 33.70 6.13
134 135 0.679960 CCCGAAATTTTCCTCGCCCT 60.680 55.000 3.61 0.00 33.70 5.19
135 136 0.733150 CCGAAATTTTCCTCGCCCTC 59.267 55.000 3.61 0.00 33.70 4.30
136 137 0.373716 CGAAATTTTCCTCGCCCTCG 59.626 55.000 3.61 0.00 0.00 4.63
137 138 0.098905 GAAATTTTCCTCGCCCTCGC 59.901 55.000 0.00 0.00 35.26 5.03
138 139 0.322546 AAATTTTCCTCGCCCTCGCT 60.323 50.000 0.00 0.00 35.26 4.93
139 140 0.322546 AATTTTCCTCGCCCTCGCTT 60.323 50.000 0.00 0.00 35.26 4.68
140 141 0.744771 ATTTTCCTCGCCCTCGCTTC 60.745 55.000 0.00 0.00 35.26 3.86
141 142 1.827399 TTTTCCTCGCCCTCGCTTCT 61.827 55.000 0.00 0.00 35.26 2.85
142 143 0.968901 TTTCCTCGCCCTCGCTTCTA 60.969 55.000 0.00 0.00 35.26 2.10
143 144 1.664321 TTCCTCGCCCTCGCTTCTAC 61.664 60.000 0.00 0.00 35.26 2.59
144 145 2.413765 CTCGCCCTCGCTTCTACC 59.586 66.667 0.00 0.00 35.26 3.18
145 146 2.361992 TCGCCCTCGCTTCTACCA 60.362 61.111 0.00 0.00 35.26 3.25
146 147 2.202756 CGCCCTCGCTTCTACCAC 60.203 66.667 0.00 0.00 0.00 4.16
147 148 2.202756 GCCCTCGCTTCTACCACG 60.203 66.667 0.00 0.00 0.00 4.94
148 149 2.494918 CCCTCGCTTCTACCACGG 59.505 66.667 0.00 0.00 0.00 4.94
149 150 2.348888 CCCTCGCTTCTACCACGGT 61.349 63.158 0.00 0.00 0.00 4.83
150 151 1.153823 CCTCGCTTCTACCACGGTG 60.154 63.158 0.00 0.00 0.00 4.94
151 152 1.585006 CTCGCTTCTACCACGGTGT 59.415 57.895 7.45 0.00 0.00 4.16
152 153 0.038526 CTCGCTTCTACCACGGTGTT 60.039 55.000 7.45 0.00 0.00 3.32
153 154 0.390124 TCGCTTCTACCACGGTGTTT 59.610 50.000 7.45 0.00 0.00 2.83
154 155 1.202557 TCGCTTCTACCACGGTGTTTT 60.203 47.619 7.45 0.00 0.00 2.43
155 156 1.193874 CGCTTCTACCACGGTGTTTTC 59.806 52.381 7.45 0.00 0.00 2.29
156 157 1.534163 GCTTCTACCACGGTGTTTTCC 59.466 52.381 7.45 0.00 0.00 3.13
178 179 2.676121 TGGACGGCCCAAAGCATG 60.676 61.111 3.83 0.00 46.50 4.06
179 180 2.676471 GGACGGCCCAAAGCATGT 60.676 61.111 0.00 0.00 46.50 3.21
180 181 2.700773 GGACGGCCCAAAGCATGTC 61.701 63.158 0.00 0.00 46.50 3.06
181 182 1.971167 GACGGCCCAAAGCATGTCA 60.971 57.895 0.00 0.00 46.50 3.58
182 183 1.304381 ACGGCCCAAAGCATGTCAT 60.304 52.632 0.00 0.00 46.50 3.06
183 184 1.140161 CGGCCCAAAGCATGTCATG 59.860 57.895 8.56 8.56 46.50 3.07
192 193 3.184206 CATGTCATGCAGCTGCGT 58.816 55.556 32.11 30.01 45.83 5.24
193 194 1.062047 CATGTCATGCAGCTGCGTC 59.938 57.895 30.32 20.19 45.83 5.19
194 195 1.078637 ATGTCATGCAGCTGCGTCT 60.079 52.632 30.32 16.08 45.83 4.18
195 196 1.088340 ATGTCATGCAGCTGCGTCTC 61.088 55.000 30.32 23.67 45.83 3.36
196 197 2.125391 TCATGCAGCTGCGTCTCC 60.125 61.111 30.32 5.04 45.83 3.71
197 198 3.561213 CATGCAGCTGCGTCTCCG 61.561 66.667 30.32 15.60 45.83 4.63
198 199 4.827087 ATGCAGCTGCGTCTCCGG 62.827 66.667 32.11 0.00 45.83 5.14
216 217 2.746277 CCCGCCCAGGACGAAAAG 60.746 66.667 0.00 0.00 45.00 2.27
217 218 3.431725 CCGCCCAGGACGAAAAGC 61.432 66.667 0.00 0.00 45.00 3.51
218 219 3.431725 CGCCCAGGACGAAAAGCC 61.432 66.667 0.00 0.00 0.00 4.35
219 220 3.062466 GCCCAGGACGAAAAGCCC 61.062 66.667 0.00 0.00 0.00 5.19
220 221 2.434331 CCCAGGACGAAAAGCCCA 59.566 61.111 0.00 0.00 0.00 5.36
221 222 1.000896 CCCAGGACGAAAAGCCCAT 60.001 57.895 0.00 0.00 0.00 4.00
222 223 0.611896 CCCAGGACGAAAAGCCCATT 60.612 55.000 0.00 0.00 0.00 3.16
223 224 1.256812 CCAGGACGAAAAGCCCATTT 58.743 50.000 0.00 0.00 0.00 2.32
224 225 1.618343 CCAGGACGAAAAGCCCATTTT 59.382 47.619 0.00 0.00 43.88 1.82
234 235 5.750352 AAAAGCCCATTTTCTGTCATGAT 57.250 34.783 0.00 0.00 36.31 2.45
235 236 5.750352 AAAGCCCATTTTCTGTCATGATT 57.250 34.783 0.00 0.00 0.00 2.57
236 237 5.750352 AAGCCCATTTTCTGTCATGATTT 57.250 34.783 0.00 0.00 0.00 2.17
237 238 5.750352 AGCCCATTTTCTGTCATGATTTT 57.250 34.783 0.00 0.00 0.00 1.82
238 239 6.117975 AGCCCATTTTCTGTCATGATTTTT 57.882 33.333 0.00 0.00 0.00 1.94
259 260 4.755266 TTTGTCATAGAAGTAGGAGCCC 57.245 45.455 0.00 0.00 0.00 5.19
260 261 3.398318 TGTCATAGAAGTAGGAGCCCA 57.602 47.619 0.00 0.00 0.00 5.36
261 262 3.031736 TGTCATAGAAGTAGGAGCCCAC 58.968 50.000 0.00 0.00 0.00 4.61
262 263 2.365941 GTCATAGAAGTAGGAGCCCACC 59.634 54.545 0.00 0.00 0.00 4.61
263 264 2.023404 TCATAGAAGTAGGAGCCCACCA 60.023 50.000 0.00 0.00 0.00 4.17
264 265 1.861982 TAGAAGTAGGAGCCCACCAC 58.138 55.000 0.00 0.00 0.00 4.16
265 266 0.178903 AGAAGTAGGAGCCCACCACA 60.179 55.000 0.00 0.00 0.00 4.17
266 267 0.912486 GAAGTAGGAGCCCACCACAT 59.088 55.000 0.00 0.00 0.00 3.21
267 268 0.912486 AAGTAGGAGCCCACCACATC 59.088 55.000 0.00 0.00 0.00 3.06
268 269 0.043334 AGTAGGAGCCCACCACATCT 59.957 55.000 0.00 0.00 0.00 2.90
269 270 1.291033 AGTAGGAGCCCACCACATCTA 59.709 52.381 0.00 0.00 0.00 1.98
270 271 2.090494 AGTAGGAGCCCACCACATCTAT 60.090 50.000 0.00 0.00 0.00 1.98
271 272 1.135094 AGGAGCCCACCACATCTATG 58.865 55.000 0.00 0.00 0.00 2.23
272 273 1.131638 GGAGCCCACCACATCTATGA 58.868 55.000 0.00 0.00 0.00 2.15
273 274 1.701847 GGAGCCCACCACATCTATGAT 59.298 52.381 0.00 0.00 0.00 2.45
274 275 2.551721 GGAGCCCACCACATCTATGATG 60.552 54.545 6.06 6.06 0.00 3.07
275 276 2.369860 GAGCCCACCACATCTATGATGA 59.630 50.000 13.63 0.00 0.00 2.92
276 277 2.984604 AGCCCACCACATCTATGATGAT 59.015 45.455 13.63 0.00 0.00 2.45
277 278 4.170449 AGCCCACCACATCTATGATGATA 58.830 43.478 13.63 0.00 0.00 2.15
278 279 4.019860 AGCCCACCACATCTATGATGATAC 60.020 45.833 13.63 0.00 0.00 2.24
279 280 4.836825 CCCACCACATCTATGATGATACC 58.163 47.826 13.63 0.00 0.00 2.73
280 281 4.498241 CCACCACATCTATGATGATACCG 58.502 47.826 13.63 0.06 0.00 4.02
281 282 4.498241 CACCACATCTATGATGATACCGG 58.502 47.826 13.63 0.00 0.00 5.28
282 283 3.515502 ACCACATCTATGATGATACCGGG 59.484 47.826 6.32 0.00 0.00 5.73
283 284 3.515502 CCACATCTATGATGATACCGGGT 59.484 47.826 6.32 4.46 0.00 5.28
284 285 4.020218 CCACATCTATGATGATACCGGGTT 60.020 45.833 4.31 0.00 0.00 4.11
285 286 5.513094 CCACATCTATGATGATACCGGGTTT 60.513 44.000 4.31 0.00 0.00 3.27
286 287 5.997746 CACATCTATGATGATACCGGGTTTT 59.002 40.000 4.31 0.00 0.00 2.43
287 288 7.158697 CACATCTATGATGATACCGGGTTTTA 58.841 38.462 4.31 0.00 0.00 1.52
288 289 7.824289 CACATCTATGATGATACCGGGTTTTAT 59.176 37.037 4.31 0.00 0.00 1.40
289 290 8.041323 ACATCTATGATGATACCGGGTTTTATC 58.959 37.037 4.31 10.13 0.00 1.75
290 291 7.547697 TCTATGATGATACCGGGTTTTATCA 57.452 36.000 21.24 21.24 38.70 2.15
291 292 7.383687 TCTATGATGATACCGGGTTTTATCAC 58.616 38.462 21.35 12.54 37.50 3.06
292 293 5.360649 TGATGATACCGGGTTTTATCACA 57.639 39.130 17.13 12.33 37.50 3.58
293 294 5.746284 TGATGATACCGGGTTTTATCACAA 58.254 37.500 17.13 6.07 37.50 3.33
294 295 6.361433 TGATGATACCGGGTTTTATCACAAT 58.639 36.000 17.13 2.83 37.50 2.71
295 296 6.831353 TGATGATACCGGGTTTTATCACAATT 59.169 34.615 17.13 2.53 37.50 2.32
296 297 7.993758 TGATGATACCGGGTTTTATCACAATTA 59.006 33.333 17.13 0.00 37.50 1.40
297 298 8.934023 ATGATACCGGGTTTTATCACAATTAT 57.066 30.769 13.12 0.00 37.50 1.28
298 299 8.385898 TGATACCGGGTTTTATCACAATTATC 57.614 34.615 4.31 0.00 31.17 1.75
299 300 5.744666 ACCGGGTTTTATCACAATTATCG 57.255 39.130 6.32 0.00 0.00 2.92
300 301 5.187687 ACCGGGTTTTATCACAATTATCGT 58.812 37.500 6.32 0.00 0.00 3.73
301 302 5.295045 ACCGGGTTTTATCACAATTATCGTC 59.705 40.000 6.32 0.00 0.00 4.20
302 303 5.294799 CCGGGTTTTATCACAATTATCGTCA 59.705 40.000 0.00 0.00 0.00 4.35
303 304 6.017440 CCGGGTTTTATCACAATTATCGTCAT 60.017 38.462 0.00 0.00 0.00 3.06
304 305 7.171848 CCGGGTTTTATCACAATTATCGTCATA 59.828 37.037 0.00 0.00 0.00 2.15
305 306 8.552865 CGGGTTTTATCACAATTATCGTCATAA 58.447 33.333 0.00 0.00 0.00 1.90
313 314 8.541133 TCACAATTATCGTCATAAAAGTGTCA 57.459 30.769 0.00 0.00 36.11 3.58
314 315 9.161629 TCACAATTATCGTCATAAAAGTGTCAT 57.838 29.630 0.00 0.00 36.11 3.06
352 353 4.373348 TTTTTCGTTCGGTCCAAAATGT 57.627 36.364 0.00 0.00 0.00 2.71
353 354 3.612472 TTTCGTTCGGTCCAAAATGTC 57.388 42.857 0.00 0.00 0.00 3.06
354 355 2.242047 TCGTTCGGTCCAAAATGTCA 57.758 45.000 0.00 0.00 0.00 3.58
355 356 1.868498 TCGTTCGGTCCAAAATGTCAC 59.132 47.619 0.00 0.00 0.00 3.67
356 357 1.397945 CGTTCGGTCCAAAATGTCACG 60.398 52.381 0.00 0.00 0.00 4.35
357 358 1.069500 GTTCGGTCCAAAATGTCACGG 60.069 52.381 0.00 0.00 0.00 4.94
358 359 0.393448 TCGGTCCAAAATGTCACGGA 59.607 50.000 0.00 0.00 0.00 4.69
359 360 1.002659 TCGGTCCAAAATGTCACGGAT 59.997 47.619 0.00 0.00 0.00 4.18
360 361 1.130373 CGGTCCAAAATGTCACGGATG 59.870 52.381 0.00 0.00 0.00 3.51
361 362 2.159382 GGTCCAAAATGTCACGGATGT 58.841 47.619 0.00 0.00 0.00 3.06
363 364 2.552315 GTCCAAAATGTCACGGATGTGT 59.448 45.455 0.00 0.00 46.49 3.72
364 365 2.811431 TCCAAAATGTCACGGATGTGTC 59.189 45.455 0.00 0.00 46.49 3.67
365 366 2.813754 CCAAAATGTCACGGATGTGTCT 59.186 45.455 0.00 0.00 46.49 3.41
366 367 3.253188 CCAAAATGTCACGGATGTGTCTT 59.747 43.478 0.00 0.00 46.49 3.01
367 368 4.261572 CCAAAATGTCACGGATGTGTCTTT 60.262 41.667 0.00 0.00 46.49 2.52
368 369 5.280945 CAAAATGTCACGGATGTGTCTTTT 58.719 37.500 0.00 0.00 46.49 2.27
369 370 5.514274 AAATGTCACGGATGTGTCTTTTT 57.486 34.783 0.00 0.00 46.49 1.94
394 395 9.924650 TTTTGTAGTGAGTAGAGATCCTTTAAC 57.075 33.333 0.00 0.00 0.00 2.01
395 396 8.645814 TTGTAGTGAGTAGAGATCCTTTAACA 57.354 34.615 0.00 0.00 0.00 2.41
396 397 8.645814 TGTAGTGAGTAGAGATCCTTTAACAA 57.354 34.615 0.00 0.00 0.00 2.83
397 398 8.521176 TGTAGTGAGTAGAGATCCTTTAACAAC 58.479 37.037 0.00 0.00 0.00 3.32
408 409 9.887406 GAGATCCTTTAACAACGTCATTAAAAA 57.113 29.630 14.39 8.70 31.63 1.94
456 457 9.751542 ATAAAGAGAAGTTGTATCGGTATTCTG 57.248 33.333 0.00 0.00 0.00 3.02
534 535 0.824759 CCCCTCAACCTTAGACCTCG 59.175 60.000 0.00 0.00 0.00 4.63
562 563 7.164204 GCGTTATGCTATTTGTTTAGTTTTGC 58.836 34.615 0.00 0.00 41.73 3.68
568 569 6.699642 TGCTATTTGTTTAGTTTTGCCAGTTC 59.300 34.615 0.00 0.00 0.00 3.01
587 588 4.455533 AGTTCGGTATGTACGTGACTTGTA 59.544 41.667 0.00 0.00 0.00 2.41
593 594 6.238184 CGGTATGTACGTGACTTGTACTATGA 60.238 42.308 0.00 0.00 42.09 2.15
673 678 2.592287 GCGGACACGTGGGGAAAA 60.592 61.111 21.57 0.00 43.45 2.29
869 879 4.308458 CGTTCTGCGGTGGTGGGA 62.308 66.667 0.00 0.00 36.85 4.37
870 880 2.112297 GTTCTGCGGTGGTGGGAA 59.888 61.111 0.00 0.00 0.00 3.97
871 881 1.966451 GTTCTGCGGTGGTGGGAAG 60.966 63.158 0.00 0.00 0.00 3.46
872 882 3.190738 TTCTGCGGTGGTGGGAAGG 62.191 63.158 0.00 0.00 0.00 3.46
908 918 2.436109 GCTGGTGGGAAGCCTTCA 59.564 61.111 6.80 0.00 34.45 3.02
956 966 0.330267 GCCTAACCCAAACCCTAGCA 59.670 55.000 0.00 0.00 0.00 3.49
957 967 1.063942 GCCTAACCCAAACCCTAGCAT 60.064 52.381 0.00 0.00 0.00 3.79
959 969 2.561569 CTAACCCAAACCCTAGCATCG 58.438 52.381 0.00 0.00 0.00 3.84
961 971 0.252197 ACCCAAACCCTAGCATCGTC 59.748 55.000 0.00 0.00 0.00 4.20
962 972 0.463833 CCCAAACCCTAGCATCGTCC 60.464 60.000 0.00 0.00 0.00 4.79
963 973 0.541863 CCAAACCCTAGCATCGTCCT 59.458 55.000 0.00 0.00 0.00 3.85
964 974 1.473434 CCAAACCCTAGCATCGTCCTC 60.473 57.143 0.00 0.00 0.00 3.71
965 975 0.460311 AAACCCTAGCATCGTCCTCG 59.540 55.000 0.00 0.00 38.55 4.63
974 984 2.435586 TCGTCCTCGACCTCGACC 60.436 66.667 0.00 0.00 44.22 4.79
1379 1403 5.332743 TGAATTAATCTGCCCCAAAAGACT 58.667 37.500 0.00 0.00 0.00 3.24
1382 1406 2.426842 ATCTGCCCCAAAAGACTAGC 57.573 50.000 0.00 0.00 0.00 3.42
1395 1419 4.539509 AAGACTAGCAGATTCGTAGTCG 57.460 45.455 13.59 0.00 44.94 4.18
1419 1443 2.612721 GGTGGCCAATTTCATGGTTGTC 60.613 50.000 7.24 0.00 42.75 3.18
1587 1669 5.887598 TGCATATGTGAGTTCTTTATTGGCT 59.112 36.000 4.29 0.00 0.00 4.75
1588 1670 7.053498 TGCATATGTGAGTTCTTTATTGGCTA 58.947 34.615 4.29 0.00 0.00 3.93
1589 1671 7.555914 TGCATATGTGAGTTCTTTATTGGCTAA 59.444 33.333 4.29 0.00 0.00 3.09
1687 1792 1.470098 GGTTGATTCGCTGTTGCAGAT 59.530 47.619 0.00 0.00 39.64 2.90
1725 1830 9.584839 GAAAACATTTGTTATTGTCATGAAAGC 57.415 29.630 0.00 0.00 37.25 3.51
1726 1831 8.891671 AAACATTTGTTATTGTCATGAAAGCT 57.108 26.923 0.00 0.00 37.25 3.74
1727 1832 8.524870 AACATTTGTTATTGTCATGAAAGCTC 57.475 30.769 0.00 0.00 36.32 4.09
1728 1833 7.889469 ACATTTGTTATTGTCATGAAAGCTCT 58.111 30.769 0.00 0.00 0.00 4.09
1729 1834 8.362639 ACATTTGTTATTGTCATGAAAGCTCTT 58.637 29.630 0.00 0.00 0.00 2.85
1730 1835 8.857216 CATTTGTTATTGTCATGAAAGCTCTTC 58.143 33.333 0.00 0.00 0.00 2.87
1731 1836 7.750229 TTGTTATTGTCATGAAAGCTCTTCT 57.250 32.000 0.00 0.00 0.00 2.85
1732 1837 7.369803 TGTTATTGTCATGAAAGCTCTTCTC 57.630 36.000 0.00 0.00 0.00 2.87
1733 1838 7.164122 TGTTATTGTCATGAAAGCTCTTCTCT 58.836 34.615 0.00 0.00 0.00 3.10
1734 1839 7.663081 TGTTATTGTCATGAAAGCTCTTCTCTT 59.337 33.333 0.00 0.00 0.00 2.85
1735 1840 8.510505 GTTATTGTCATGAAAGCTCTTCTCTTT 58.489 33.333 0.00 0.00 36.55 2.52
1736 1841 6.949352 TTGTCATGAAAGCTCTTCTCTTTT 57.051 33.333 0.00 0.00 34.24 2.27
1737 1842 6.949352 TGTCATGAAAGCTCTTCTCTTTTT 57.051 33.333 0.00 0.00 34.24 1.94
1755 1860 2.285827 TTTTGCCTTTGACGTGGTTG 57.714 45.000 0.00 0.00 0.00 3.77
1756 1861 1.464734 TTTGCCTTTGACGTGGTTGA 58.535 45.000 0.00 0.00 0.00 3.18
1757 1862 0.736053 TTGCCTTTGACGTGGTTGAC 59.264 50.000 0.00 0.00 0.00 3.18
1765 1870 3.838795 CGTGGTTGACGCGCTAGC 61.839 66.667 5.73 4.06 46.92 3.42
1766 1871 2.432628 GTGGTTGACGCGCTAGCT 60.433 61.111 13.93 0.00 42.32 3.32
1767 1872 2.432456 TGGTTGACGCGCTAGCTG 60.432 61.111 13.93 7.74 42.32 4.24
1768 1873 2.432628 GGTTGACGCGCTAGCTGT 60.433 61.111 13.93 11.22 42.32 4.40
1769 1874 2.027625 GGTTGACGCGCTAGCTGTT 61.028 57.895 13.93 0.00 42.32 3.16
1770 1875 0.734942 GGTTGACGCGCTAGCTGTTA 60.735 55.000 13.93 5.27 42.32 2.41
1771 1876 0.365859 GTTGACGCGCTAGCTGTTAC 59.634 55.000 13.93 9.58 42.32 2.50
1772 1877 0.038983 TTGACGCGCTAGCTGTTACA 60.039 50.000 13.93 3.96 42.32 2.41
1773 1878 0.456142 TGACGCGCTAGCTGTTACAG 60.456 55.000 13.93 8.18 42.32 2.74
1774 1879 0.179171 GACGCGCTAGCTGTTACAGA 60.179 55.000 17.40 0.00 42.32 3.41
1775 1880 0.456221 ACGCGCTAGCTGTTACAGAT 59.544 50.000 17.40 12.98 42.32 2.90
1776 1881 1.124462 CGCGCTAGCTGTTACAGATC 58.876 55.000 17.40 0.00 42.32 2.75
1777 1882 1.533965 CGCGCTAGCTGTTACAGATCA 60.534 52.381 17.40 0.00 42.32 2.92
1778 1883 2.748605 GCGCTAGCTGTTACAGATCAT 58.251 47.619 17.40 1.04 41.01 2.45
1779 1884 3.126831 GCGCTAGCTGTTACAGATCATT 58.873 45.455 17.40 0.00 41.01 2.57
1780 1885 3.183373 GCGCTAGCTGTTACAGATCATTC 59.817 47.826 17.40 0.00 41.01 2.67
1781 1886 4.615949 CGCTAGCTGTTACAGATCATTCT 58.384 43.478 17.40 4.93 32.44 2.40
1782 1887 5.763088 CGCTAGCTGTTACAGATCATTCTA 58.237 41.667 17.40 5.84 32.44 2.10
1783 1888 6.209361 CGCTAGCTGTTACAGATCATTCTAA 58.791 40.000 17.40 0.00 32.44 2.10
1784 1889 6.143118 CGCTAGCTGTTACAGATCATTCTAAC 59.857 42.308 17.40 1.79 32.44 2.34
1785 1890 7.206687 GCTAGCTGTTACAGATCATTCTAACT 58.793 38.462 17.40 2.05 32.44 2.24
1786 1891 7.708752 GCTAGCTGTTACAGATCATTCTAACTT 59.291 37.037 17.40 0.00 32.44 2.66
1787 1892 7.840342 AGCTGTTACAGATCATTCTAACTTG 57.160 36.000 17.40 0.00 32.44 3.16
1788 1893 7.615403 AGCTGTTACAGATCATTCTAACTTGA 58.385 34.615 17.40 0.00 32.44 3.02
1789 1894 7.547370 AGCTGTTACAGATCATTCTAACTTGAC 59.453 37.037 17.40 0.00 32.44 3.18
1790 1895 7.331934 GCTGTTACAGATCATTCTAACTTGACA 59.668 37.037 17.40 0.00 32.44 3.58
1791 1896 9.208022 CTGTTACAGATCATTCTAACTTGACAA 57.792 33.333 6.50 0.00 32.44 3.18
1792 1897 8.988934 TGTTACAGATCATTCTAACTTGACAAC 58.011 33.333 0.00 0.00 0.00 3.32
1793 1898 8.443937 GTTACAGATCATTCTAACTTGACAACC 58.556 37.037 0.00 0.00 0.00 3.77
1794 1899 6.533730 ACAGATCATTCTAACTTGACAACCA 58.466 36.000 0.00 0.00 0.00 3.67
1795 1900 7.170965 ACAGATCATTCTAACTTGACAACCAT 58.829 34.615 0.00 0.00 0.00 3.55
1796 1901 7.667219 ACAGATCATTCTAACTTGACAACCATT 59.333 33.333 0.00 0.00 0.00 3.16
1797 1902 8.517878 CAGATCATTCTAACTTGACAACCATTT 58.482 33.333 0.00 0.00 0.00 2.32
1798 1903 8.517878 AGATCATTCTAACTTGACAACCATTTG 58.482 33.333 0.00 0.00 38.83 2.32
1800 1905 8.006298 TCATTCTAACTTGACAACCATTTGTT 57.994 30.769 0.00 0.00 46.43 2.83
1801 1906 9.126151 TCATTCTAACTTGACAACCATTTGTTA 57.874 29.630 0.00 0.00 46.43 2.41
1802 1907 9.912634 CATTCTAACTTGACAACCATTTGTTAT 57.087 29.630 0.00 0.00 46.43 1.89
1804 1909 9.743057 TTCTAACTTGACAACCATTTGTTATTG 57.257 29.630 0.00 0.00 46.43 1.90
1805 1910 8.908903 TCTAACTTGACAACCATTTGTTATTGT 58.091 29.630 0.00 0.00 46.43 2.71
1806 1911 9.180678 CTAACTTGACAACCATTTGTTATTGTC 57.819 33.333 8.63 8.63 46.43 3.18
1847 1952 1.503542 CCTTTGATGTGGCTGACGC 59.496 57.895 0.00 0.00 0.00 5.19
2006 2748 6.430308 ACGAGAGACACACTAAATTCTGACTA 59.570 38.462 0.00 0.00 0.00 2.59
2216 2964 9.593565 TGTAATATCTGAACTCATCAGGTCTAT 57.406 33.333 5.69 0.00 46.96 1.98
2549 3328 5.627499 TTATGATTGGTTGAGCTTGTGTC 57.373 39.130 0.00 0.00 0.00 3.67
2576 3355 0.843984 AGGGTGGCGCCTTAATGTAT 59.156 50.000 29.70 2.20 37.43 2.29
2979 4113 4.341806 TGCACTTGGTTTGATGAAGAATGT 59.658 37.500 0.00 0.00 0.00 2.71
2980 4114 5.163426 TGCACTTGGTTTGATGAAGAATGTT 60.163 36.000 0.00 0.00 0.00 2.71
2981 4115 5.754890 GCACTTGGTTTGATGAAGAATGTTT 59.245 36.000 0.00 0.00 0.00 2.83
2982 4116 6.258507 GCACTTGGTTTGATGAAGAATGTTTT 59.741 34.615 0.00 0.00 0.00 2.43
2983 4117 7.201635 GCACTTGGTTTGATGAAGAATGTTTTT 60.202 33.333 0.00 0.00 0.00 1.94
3003 4137 5.350504 TTTTTGAGCCTTGGTTTGATGAA 57.649 34.783 0.00 0.00 0.00 2.57
3004 4138 4.589216 TTTGAGCCTTGGTTTGATGAAG 57.411 40.909 0.00 0.00 0.00 3.02
3005 4139 3.507162 TGAGCCTTGGTTTGATGAAGA 57.493 42.857 0.00 0.00 0.00 2.87
3006 4140 3.831323 TGAGCCTTGGTTTGATGAAGAA 58.169 40.909 0.00 0.00 0.00 2.52
3007 4141 4.410099 TGAGCCTTGGTTTGATGAAGAAT 58.590 39.130 0.00 0.00 0.00 2.40
3158 4295 3.196685 ACTTGGCCACTTTGCTTTTTGTA 59.803 39.130 3.88 0.00 0.00 2.41
3163 4300 1.786579 CACTTTGCTTTTTGTAGCGGC 59.213 47.619 0.00 0.00 44.18 6.53
3181 4318 3.452474 CGGCAACTTTGTCAATTTTCCA 58.548 40.909 0.00 0.00 31.86 3.53
3258 4395 4.202441 GTGCCTGATGATGTCCAACTTAT 58.798 43.478 0.00 0.00 0.00 1.73
3331 4468 2.103432 TGTCCATACAACCGTTCTGTGT 59.897 45.455 0.00 0.00 30.91 3.72
3407 4545 4.616802 CCGTGATGTTTATTGCACTTGTTC 59.383 41.667 0.00 0.00 0.00 3.18
3489 4627 0.249447 GTTGCACTTTGTTCAGGGGC 60.249 55.000 0.00 0.00 0.00 5.80
3491 4629 1.832167 GCACTTTGTTCAGGGGCCA 60.832 57.895 4.39 0.00 0.00 5.36
3563 4735 4.083271 GGAAGTGCTAATGTCCAACTTGTC 60.083 45.833 0.00 0.00 0.00 3.18
3692 4864 6.180567 GTGCGTAACATTTCTATACGAAACC 58.819 40.000 8.56 0.00 43.90 3.27
3709 4881 4.613622 CGAAACCACTTACCAAGATGCTTG 60.614 45.833 0.00 0.00 0.00 4.01
3710 4882 3.508845 ACCACTTACCAAGATGCTTGT 57.491 42.857 6.44 0.00 0.00 3.16
3711 4883 4.634012 ACCACTTACCAAGATGCTTGTA 57.366 40.909 6.44 0.00 0.00 2.41
3712 4884 5.179452 ACCACTTACCAAGATGCTTGTAT 57.821 39.130 6.44 0.00 0.00 2.29
3713 4885 4.943705 ACCACTTACCAAGATGCTTGTATG 59.056 41.667 6.44 4.65 0.00 2.39
3714 4886 4.201950 CCACTTACCAAGATGCTTGTATGC 60.202 45.833 6.44 0.00 0.00 3.14
3716 4888 2.512692 ACCAAGATGCTTGTATGCCA 57.487 45.000 6.44 0.00 0.00 4.92
3717 4889 3.022557 ACCAAGATGCTTGTATGCCAT 57.977 42.857 6.44 0.00 0.00 4.40
3718 4890 4.169059 ACCAAGATGCTTGTATGCCATA 57.831 40.909 6.44 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.664384 GGAAGTAGGGTATTACCTCCATAGAG 59.336 46.154 12.54 0.00 42.09 2.43
1 2 6.337472 AGGAAGTAGGGTATTACCTCCATAGA 59.663 42.308 16.39 0.00 42.09 1.98
2 3 6.437793 CAGGAAGTAGGGTATTACCTCCATAG 59.562 46.154 16.39 6.09 42.09 2.23
3 4 6.320518 CAGGAAGTAGGGTATTACCTCCATA 58.679 44.000 16.39 3.42 42.09 2.74
4 5 5.155905 CAGGAAGTAGGGTATTACCTCCAT 58.844 45.833 16.39 4.17 42.09 3.41
5 6 4.553678 CAGGAAGTAGGGTATTACCTCCA 58.446 47.826 16.39 0.80 42.09 3.86
6 7 3.324268 GCAGGAAGTAGGGTATTACCTCC 59.676 52.174 12.54 10.66 42.09 4.30
7 8 4.224762 AGCAGGAAGTAGGGTATTACCTC 58.775 47.826 12.54 2.11 42.09 3.85
8 9 4.282292 AGCAGGAAGTAGGGTATTACCT 57.718 45.455 12.54 2.07 44.75 3.08
9 10 4.407945 TCAAGCAGGAAGTAGGGTATTACC 59.592 45.833 4.11 4.11 37.60 2.85
10 11 5.609533 TCAAGCAGGAAGTAGGGTATTAC 57.390 43.478 0.00 0.00 0.00 1.89
11 12 6.385759 TCAATCAAGCAGGAAGTAGGGTATTA 59.614 38.462 0.00 0.00 0.00 0.98
12 13 5.191722 TCAATCAAGCAGGAAGTAGGGTATT 59.808 40.000 0.00 0.00 0.00 1.89
13 14 4.721776 TCAATCAAGCAGGAAGTAGGGTAT 59.278 41.667 0.00 0.00 0.00 2.73
14 15 4.101114 TCAATCAAGCAGGAAGTAGGGTA 58.899 43.478 0.00 0.00 0.00 3.69
15 16 2.912956 TCAATCAAGCAGGAAGTAGGGT 59.087 45.455 0.00 0.00 0.00 4.34
16 17 3.634397 TCAATCAAGCAGGAAGTAGGG 57.366 47.619 0.00 0.00 0.00 3.53
17 18 5.033589 AGATCAATCAAGCAGGAAGTAGG 57.966 43.478 0.00 0.00 0.00 3.18
18 19 6.111382 TCAAGATCAATCAAGCAGGAAGTAG 58.889 40.000 0.00 0.00 0.00 2.57
19 20 6.053632 TCAAGATCAATCAAGCAGGAAGTA 57.946 37.500 0.00 0.00 0.00 2.24
20 21 4.914983 TCAAGATCAATCAAGCAGGAAGT 58.085 39.130 0.00 0.00 0.00 3.01
21 22 5.589050 TCATCAAGATCAATCAAGCAGGAAG 59.411 40.000 0.00 0.00 0.00 3.46
22 23 5.503002 TCATCAAGATCAATCAAGCAGGAA 58.497 37.500 0.00 0.00 0.00 3.36
23 24 5.106876 TCATCAAGATCAATCAAGCAGGA 57.893 39.130 0.00 0.00 0.00 3.86
24 25 5.830000 TTCATCAAGATCAATCAAGCAGG 57.170 39.130 0.00 0.00 0.00 4.85
25 26 8.784043 TCATATTCATCAAGATCAATCAAGCAG 58.216 33.333 0.00 0.00 0.00 4.24
26 27 8.685838 TCATATTCATCAAGATCAATCAAGCA 57.314 30.769 0.00 0.00 0.00 3.91
27 28 8.784994 ACTCATATTCATCAAGATCAATCAAGC 58.215 33.333 0.00 0.00 0.00 4.01
48 49 9.201989 TGGTAGATCAACTCTTGTAATACTCAT 57.798 33.333 0.00 0.00 35.28 2.90
49 50 8.467598 GTGGTAGATCAACTCTTGTAATACTCA 58.532 37.037 0.00 0.00 35.28 3.41
50 51 7.644551 CGTGGTAGATCAACTCTTGTAATACTC 59.355 40.741 0.00 0.00 35.28 2.59
51 52 7.338703 TCGTGGTAGATCAACTCTTGTAATACT 59.661 37.037 0.00 0.00 35.28 2.12
52 53 7.478322 TCGTGGTAGATCAACTCTTGTAATAC 58.522 38.462 0.00 0.00 35.28 1.89
53 54 7.555195 TCTCGTGGTAGATCAACTCTTGTAATA 59.445 37.037 0.00 0.00 35.28 0.98
54 55 6.377429 TCTCGTGGTAGATCAACTCTTGTAAT 59.623 38.462 0.00 0.00 35.28 1.89
55 56 5.708697 TCTCGTGGTAGATCAACTCTTGTAA 59.291 40.000 0.00 0.00 35.28 2.41
56 57 5.250982 TCTCGTGGTAGATCAACTCTTGTA 58.749 41.667 0.00 0.00 35.28 2.41
57 58 4.079970 TCTCGTGGTAGATCAACTCTTGT 58.920 43.478 0.00 0.00 35.28 3.16
58 59 4.703645 TCTCGTGGTAGATCAACTCTTG 57.296 45.455 0.00 0.00 35.28 3.02
73 74 6.972977 GGGTTTTAGCCATTACGATCTCGTG 61.973 48.000 15.08 0.00 43.54 4.35
74 75 4.976706 GGGTTTTAGCCATTACGATCTCGT 60.977 45.833 10.40 10.40 44.81 4.18
75 76 3.493503 GGGTTTTAGCCATTACGATCTCG 59.506 47.826 0.00 0.00 39.54 4.04
76 77 4.448210 TGGGTTTTAGCCATTACGATCTC 58.552 43.478 0.00 0.00 41.50 2.75
77 78 4.497291 TGGGTTTTAGCCATTACGATCT 57.503 40.909 0.00 0.00 41.50 2.75
86 87 2.814842 CGGTTAAGGTGGGTTTTAGCCA 60.815 50.000 0.00 0.00 44.64 4.75
87 88 1.814394 CGGTTAAGGTGGGTTTTAGCC 59.186 52.381 0.00 0.00 36.00 3.93
88 89 1.814394 CCGGTTAAGGTGGGTTTTAGC 59.186 52.381 0.00 0.00 0.00 3.09
89 90 2.040145 TCCCGGTTAAGGTGGGTTTTAG 59.960 50.000 0.00 0.00 43.75 1.85
90 91 2.061061 TCCCGGTTAAGGTGGGTTTTA 58.939 47.619 0.00 0.00 43.75 1.52
91 92 0.852155 TCCCGGTTAAGGTGGGTTTT 59.148 50.000 0.00 0.00 43.75 2.43
92 93 0.852155 TTCCCGGTTAAGGTGGGTTT 59.148 50.000 0.00 0.00 43.75 3.27
93 94 0.111061 GTTCCCGGTTAAGGTGGGTT 59.889 55.000 0.00 0.00 43.75 4.11
94 95 0.769386 AGTTCCCGGTTAAGGTGGGT 60.769 55.000 0.00 0.00 43.75 4.51
95 96 0.035725 GAGTTCCCGGTTAAGGTGGG 60.036 60.000 0.00 0.95 44.75 4.61
96 97 0.035725 GGAGTTCCCGGTTAAGGTGG 60.036 60.000 0.00 0.00 0.00 4.61
97 98 3.545724 GGAGTTCCCGGTTAAGGTG 57.454 57.895 0.00 0.00 0.00 4.00
108 109 2.753452 GAGGAAAATTTCGGGGAGTTCC 59.247 50.000 0.00 0.00 35.74 3.62
109 110 2.418976 CGAGGAAAATTTCGGGGAGTTC 59.581 50.000 0.00 0.00 33.39 3.01
110 111 2.433436 CGAGGAAAATTTCGGGGAGTT 58.567 47.619 0.00 0.00 33.39 3.01
111 112 1.949079 GCGAGGAAAATTTCGGGGAGT 60.949 52.381 0.00 0.00 37.30 3.85
112 113 0.733150 GCGAGGAAAATTTCGGGGAG 59.267 55.000 0.00 0.00 37.30 4.30
113 114 0.678684 GGCGAGGAAAATTTCGGGGA 60.679 55.000 0.00 0.00 37.30 4.81
114 115 1.663379 GGGCGAGGAAAATTTCGGGG 61.663 60.000 0.00 0.00 37.30 5.73
115 116 0.679960 AGGGCGAGGAAAATTTCGGG 60.680 55.000 0.00 0.00 37.30 5.14
116 117 0.733150 GAGGGCGAGGAAAATTTCGG 59.267 55.000 0.00 0.00 37.30 4.30
117 118 0.373716 CGAGGGCGAGGAAAATTTCG 59.626 55.000 0.00 0.00 40.82 3.46
118 119 0.098905 GCGAGGGCGAGGAAAATTTC 59.901 55.000 0.00 0.00 40.82 2.17
119 120 0.322546 AGCGAGGGCGAGGAAAATTT 60.323 50.000 0.00 0.00 46.35 1.82
120 121 0.322546 AAGCGAGGGCGAGGAAAATT 60.323 50.000 0.00 0.00 46.35 1.82
121 122 0.744771 GAAGCGAGGGCGAGGAAAAT 60.745 55.000 0.00 0.00 46.35 1.82
122 123 1.375523 GAAGCGAGGGCGAGGAAAA 60.376 57.895 0.00 0.00 46.35 2.29
123 124 0.968901 TAGAAGCGAGGGCGAGGAAA 60.969 55.000 0.00 0.00 46.35 3.13
124 125 1.379443 TAGAAGCGAGGGCGAGGAA 60.379 57.895 0.00 0.00 46.35 3.36
125 126 2.119655 GTAGAAGCGAGGGCGAGGA 61.120 63.158 0.00 0.00 46.35 3.71
126 127 2.413765 GTAGAAGCGAGGGCGAGG 59.586 66.667 0.00 0.00 46.35 4.63
127 128 2.413765 GGTAGAAGCGAGGGCGAG 59.586 66.667 0.00 0.00 46.35 5.03
128 129 2.361992 TGGTAGAAGCGAGGGCGA 60.362 61.111 0.00 0.00 46.35 5.54
129 130 2.202756 GTGGTAGAAGCGAGGGCG 60.203 66.667 0.00 0.00 46.35 6.13
130 131 2.202756 CGTGGTAGAAGCGAGGGC 60.203 66.667 0.00 0.00 40.37 5.19
131 132 2.348888 ACCGTGGTAGAAGCGAGGG 61.349 63.158 0.00 0.00 0.00 4.30
132 133 1.153823 CACCGTGGTAGAAGCGAGG 60.154 63.158 0.00 0.00 0.00 4.63
133 134 0.038526 AACACCGTGGTAGAAGCGAG 60.039 55.000 3.03 0.00 0.00 5.03
134 135 0.390124 AAACACCGTGGTAGAAGCGA 59.610 50.000 3.03 0.00 0.00 4.93
135 136 1.193874 GAAAACACCGTGGTAGAAGCG 59.806 52.381 3.03 0.00 0.00 4.68
136 137 1.534163 GGAAAACACCGTGGTAGAAGC 59.466 52.381 3.03 0.00 0.00 3.86
137 138 1.796459 CGGAAAACACCGTGGTAGAAG 59.204 52.381 3.03 0.00 46.70 2.85
138 139 1.868469 CGGAAAACACCGTGGTAGAA 58.132 50.000 3.03 0.00 46.70 2.10
139 140 3.591979 CGGAAAACACCGTGGTAGA 57.408 52.632 3.03 0.00 46.70 2.59
157 158 2.700773 GCTTTGGGCCGTCCATGAC 61.701 63.158 0.00 0.00 46.52 3.06
158 159 2.361104 GCTTTGGGCCGTCCATGA 60.361 61.111 0.00 0.00 46.52 3.07
159 160 2.053865 ATGCTTTGGGCCGTCCATG 61.054 57.895 0.00 0.00 46.52 3.66
160 161 2.053865 CATGCTTTGGGCCGTCCAT 61.054 57.895 0.00 0.00 46.52 3.41
161 162 2.676121 CATGCTTTGGGCCGTCCA 60.676 61.111 0.00 0.00 45.43 4.02
162 163 2.676471 ACATGCTTTGGGCCGTCC 60.676 61.111 0.00 0.00 40.92 4.79
163 164 1.315257 ATGACATGCTTTGGGCCGTC 61.315 55.000 0.00 0.00 40.53 4.79
164 165 1.304381 ATGACATGCTTTGGGCCGT 60.304 52.632 0.00 0.00 40.92 5.68
165 166 1.140161 CATGACATGCTTTGGGCCG 59.860 57.895 1.71 0.00 40.92 6.13
175 176 1.062047 GACGCAGCTGCATGACATG 59.938 57.895 36.03 20.96 42.21 3.21
176 177 1.078637 AGACGCAGCTGCATGACAT 60.079 52.632 36.03 15.03 42.21 3.06
177 178 1.739196 GAGACGCAGCTGCATGACA 60.739 57.895 36.03 0.00 42.21 3.58
178 179 2.459442 GGAGACGCAGCTGCATGAC 61.459 63.158 36.03 23.11 42.21 3.06
179 180 2.125391 GGAGACGCAGCTGCATGA 60.125 61.111 36.03 0.00 42.21 3.07
199 200 2.746277 CTTTTCGTCCTGGGCGGG 60.746 66.667 21.87 5.25 0.00 6.13
200 201 3.431725 GCTTTTCGTCCTGGGCGG 61.432 66.667 21.87 5.53 0.00 6.13
201 202 3.431725 GGCTTTTCGTCCTGGGCG 61.432 66.667 15.85 15.85 0.00 6.13
202 203 3.062466 GGGCTTTTCGTCCTGGGC 61.062 66.667 0.00 0.00 33.40 5.36
203 204 0.611896 AATGGGCTTTTCGTCCTGGG 60.612 55.000 0.00 0.00 38.58 4.45
204 205 1.256812 AAATGGGCTTTTCGTCCTGG 58.743 50.000 0.00 0.00 38.58 4.45
205 206 2.946564 GAAAATGGGCTTTTCGTCCTG 58.053 47.619 0.00 0.00 42.34 3.86
212 213 5.750352 ATCATGACAGAAAATGGGCTTTT 57.250 34.783 0.00 0.00 39.78 2.27
213 214 5.750352 AATCATGACAGAAAATGGGCTTT 57.250 34.783 0.00 0.00 0.00 3.51
214 215 5.750352 AAATCATGACAGAAAATGGGCTT 57.250 34.783 0.00 0.00 0.00 4.35
215 216 5.750352 AAAATCATGACAGAAAATGGGCT 57.250 34.783 0.00 0.00 0.00 5.19
236 237 5.013704 TGGGCTCCTACTTCTATGACAAAAA 59.986 40.000 0.00 0.00 0.00 1.94
237 238 4.534500 TGGGCTCCTACTTCTATGACAAAA 59.466 41.667 0.00 0.00 0.00 2.44
238 239 4.081087 GTGGGCTCCTACTTCTATGACAAA 60.081 45.833 0.00 0.00 0.00 2.83
239 240 3.451178 GTGGGCTCCTACTTCTATGACAA 59.549 47.826 0.00 0.00 0.00 3.18
240 241 3.031736 GTGGGCTCCTACTTCTATGACA 58.968 50.000 0.00 0.00 0.00 3.58
241 242 2.365941 GGTGGGCTCCTACTTCTATGAC 59.634 54.545 2.46 0.00 0.00 3.06
242 243 2.023404 TGGTGGGCTCCTACTTCTATGA 60.023 50.000 2.46 0.00 0.00 2.15
243 244 2.103263 GTGGTGGGCTCCTACTTCTATG 59.897 54.545 2.46 0.00 0.00 2.23
244 245 2.292918 TGTGGTGGGCTCCTACTTCTAT 60.293 50.000 2.46 0.00 0.00 1.98
245 246 1.078159 TGTGGTGGGCTCCTACTTCTA 59.922 52.381 2.46 0.00 0.00 2.10
246 247 0.178903 TGTGGTGGGCTCCTACTTCT 60.179 55.000 2.46 0.00 0.00 2.85
247 248 0.912486 ATGTGGTGGGCTCCTACTTC 59.088 55.000 2.46 0.00 0.00 3.01
248 249 0.912486 GATGTGGTGGGCTCCTACTT 59.088 55.000 2.46 0.00 0.00 2.24
249 250 0.043334 AGATGTGGTGGGCTCCTACT 59.957 55.000 2.46 0.00 0.00 2.57
250 251 1.789523 TAGATGTGGTGGGCTCCTAC 58.210 55.000 0.00 0.00 0.00 3.18
251 252 2.090775 TCATAGATGTGGTGGGCTCCTA 60.091 50.000 0.00 0.00 0.00 2.94
252 253 1.135094 CATAGATGTGGTGGGCTCCT 58.865 55.000 0.00 0.00 0.00 3.69
253 254 1.131638 TCATAGATGTGGTGGGCTCC 58.868 55.000 0.00 0.00 0.00 4.70
254 255 2.369860 TCATCATAGATGTGGTGGGCTC 59.630 50.000 6.86 0.00 0.00 4.70
255 256 2.411583 TCATCATAGATGTGGTGGGCT 58.588 47.619 6.86 0.00 0.00 5.19
256 257 2.936919 TCATCATAGATGTGGTGGGC 57.063 50.000 6.86 0.00 0.00 5.36
257 258 4.621510 CGGTATCATCATAGATGTGGTGGG 60.622 50.000 6.86 0.00 0.00 4.61
258 259 4.498241 CGGTATCATCATAGATGTGGTGG 58.502 47.826 6.86 0.00 0.00 4.61
259 260 4.498241 CCGGTATCATCATAGATGTGGTG 58.502 47.826 6.86 0.00 0.00 4.17
260 261 3.515502 CCCGGTATCATCATAGATGTGGT 59.484 47.826 0.00 0.00 0.00 4.16
261 262 3.515502 ACCCGGTATCATCATAGATGTGG 59.484 47.826 0.00 3.53 0.00 4.17
262 263 4.808414 ACCCGGTATCATCATAGATGTG 57.192 45.455 0.00 0.00 0.00 3.21
263 264 5.825593 AAACCCGGTATCATCATAGATGT 57.174 39.130 0.00 0.00 0.00 3.06
264 265 8.040727 TGATAAAACCCGGTATCATCATAGATG 58.959 37.037 8.10 0.62 32.94 2.90
265 266 8.041323 GTGATAAAACCCGGTATCATCATAGAT 58.959 37.037 13.76 0.00 38.60 1.98
266 267 7.015779 TGTGATAAAACCCGGTATCATCATAGA 59.984 37.037 13.76 0.00 38.60 1.98
267 268 7.158697 TGTGATAAAACCCGGTATCATCATAG 58.841 38.462 13.76 0.00 38.60 2.23
268 269 7.068686 TGTGATAAAACCCGGTATCATCATA 57.931 36.000 13.76 5.92 38.60 2.15
269 270 5.935945 TGTGATAAAACCCGGTATCATCAT 58.064 37.500 13.76 0.00 38.60 2.45
270 271 5.360649 TGTGATAAAACCCGGTATCATCA 57.639 39.130 13.76 11.14 38.60 3.07
271 272 6.877611 ATTGTGATAAAACCCGGTATCATC 57.122 37.500 13.76 9.30 38.60 2.92
272 273 8.934023 ATAATTGTGATAAAACCCGGTATCAT 57.066 30.769 13.76 3.35 38.60 2.45
273 274 7.171848 CGATAATTGTGATAAAACCCGGTATCA 59.828 37.037 8.10 8.10 34.98 2.15
274 275 7.172019 ACGATAATTGTGATAAAACCCGGTATC 59.828 37.037 0.00 1.44 0.00 2.24
275 276 6.993902 ACGATAATTGTGATAAAACCCGGTAT 59.006 34.615 0.00 0.00 0.00 2.73
276 277 6.347696 ACGATAATTGTGATAAAACCCGGTA 58.652 36.000 0.00 0.00 0.00 4.02
277 278 5.187687 ACGATAATTGTGATAAAACCCGGT 58.812 37.500 0.00 0.00 0.00 5.28
278 279 5.294799 TGACGATAATTGTGATAAAACCCGG 59.705 40.000 0.00 0.00 0.00 5.73
279 280 6.352682 TGACGATAATTGTGATAAAACCCG 57.647 37.500 0.00 0.00 0.00 5.28
287 288 9.161629 TGACACTTTTATGACGATAATTGTGAT 57.838 29.630 12.39 0.00 34.75 3.06
288 289 8.541133 TGACACTTTTATGACGATAATTGTGA 57.459 30.769 12.39 0.00 34.75 3.58
331 332 4.142447 TGACATTTTGGACCGAACGAAAAA 60.142 37.500 0.00 0.00 33.03 1.94
332 333 3.377485 TGACATTTTGGACCGAACGAAAA 59.623 39.130 0.00 0.00 33.59 2.29
333 334 2.943690 TGACATTTTGGACCGAACGAAA 59.056 40.909 0.00 0.00 0.00 3.46
334 335 2.288458 GTGACATTTTGGACCGAACGAA 59.712 45.455 0.00 0.00 0.00 3.85
335 336 1.868498 GTGACATTTTGGACCGAACGA 59.132 47.619 0.00 0.00 0.00 3.85
336 337 1.397945 CGTGACATTTTGGACCGAACG 60.398 52.381 0.00 0.00 0.00 3.95
337 338 1.069500 CCGTGACATTTTGGACCGAAC 60.069 52.381 0.00 0.00 0.00 3.95
338 339 1.202663 TCCGTGACATTTTGGACCGAA 60.203 47.619 0.00 0.00 0.00 4.30
339 340 0.393448 TCCGTGACATTTTGGACCGA 59.607 50.000 0.00 0.00 0.00 4.69
340 341 1.130373 CATCCGTGACATTTTGGACCG 59.870 52.381 0.00 0.00 32.33 4.79
341 342 2.095263 CACATCCGTGACATTTTGGACC 60.095 50.000 0.00 0.00 46.80 4.46
342 343 2.552315 ACACATCCGTGACATTTTGGAC 59.448 45.455 0.00 0.00 46.80 4.02
343 344 2.811431 GACACATCCGTGACATTTTGGA 59.189 45.455 0.00 0.00 46.80 3.53
344 345 2.813754 AGACACATCCGTGACATTTTGG 59.186 45.455 0.00 0.00 46.80 3.28
345 346 4.488126 AAGACACATCCGTGACATTTTG 57.512 40.909 0.00 0.00 46.80 2.44
346 347 5.514274 AAAAGACACATCCGTGACATTTT 57.486 34.783 0.00 1.58 46.80 1.82
347 348 5.514274 AAAAAGACACATCCGTGACATTT 57.486 34.783 0.00 0.00 46.80 2.32
368 369 9.924650 GTTAAAGGATCTCTACTCACTACAAAA 57.075 33.333 0.00 0.00 0.00 2.44
369 370 9.085645 TGTTAAAGGATCTCTACTCACTACAAA 57.914 33.333 0.00 0.00 0.00 2.83
370 371 8.645814 TGTTAAAGGATCTCTACTCACTACAA 57.354 34.615 0.00 0.00 0.00 2.41
371 372 8.521176 GTTGTTAAAGGATCTCTACTCACTACA 58.479 37.037 0.00 0.00 0.00 2.74
372 373 7.697291 CGTTGTTAAAGGATCTCTACTCACTAC 59.303 40.741 0.00 0.00 0.00 2.73
373 374 7.392673 ACGTTGTTAAAGGATCTCTACTCACTA 59.607 37.037 0.00 0.00 0.00 2.74
374 375 6.208994 ACGTTGTTAAAGGATCTCTACTCACT 59.791 38.462 0.00 0.00 0.00 3.41
375 376 6.388278 ACGTTGTTAAAGGATCTCTACTCAC 58.612 40.000 0.00 0.00 0.00 3.51
376 377 6.208007 TGACGTTGTTAAAGGATCTCTACTCA 59.792 38.462 0.00 0.00 0.00 3.41
377 378 6.618811 TGACGTTGTTAAAGGATCTCTACTC 58.381 40.000 0.00 0.00 0.00 2.59
378 379 6.585695 TGACGTTGTTAAAGGATCTCTACT 57.414 37.500 0.00 0.00 0.00 2.57
379 380 7.829378 AATGACGTTGTTAAAGGATCTCTAC 57.171 36.000 0.00 0.00 0.00 2.59
380 381 9.932207 TTTAATGACGTTGTTAAAGGATCTCTA 57.068 29.630 12.30 0.00 0.00 2.43
381 382 8.842358 TTTAATGACGTTGTTAAAGGATCTCT 57.158 30.769 12.30 0.00 0.00 3.10
382 383 9.887406 TTTTTAATGACGTTGTTAAAGGATCTC 57.113 29.630 14.54 0.00 33.02 2.75
385 386 9.974980 ACATTTTTAATGACGTTGTTAAAGGAT 57.025 25.926 14.54 11.61 33.02 3.24
386 387 9.239002 CACATTTTTAATGACGTTGTTAAAGGA 57.761 29.630 14.54 10.44 33.02 3.36
387 388 8.484008 CCACATTTTTAATGACGTTGTTAAAGG 58.516 33.333 14.54 10.57 33.02 3.11
388 389 8.001549 GCCACATTTTTAATGACGTTGTTAAAG 58.998 33.333 14.54 9.19 33.02 1.85
389 390 7.306051 CGCCACATTTTTAATGACGTTGTTAAA 60.306 33.333 12.30 12.30 0.00 1.52
390 391 6.142480 CGCCACATTTTTAATGACGTTGTTAA 59.858 34.615 6.42 0.00 0.00 2.01
391 392 5.625721 CGCCACATTTTTAATGACGTTGTTA 59.374 36.000 6.42 0.00 0.00 2.41
392 393 4.442733 CGCCACATTTTTAATGACGTTGTT 59.557 37.500 6.42 0.00 0.00 2.83
393 394 3.978217 CGCCACATTTTTAATGACGTTGT 59.022 39.130 6.42 0.00 0.00 3.32
394 395 3.363426 CCGCCACATTTTTAATGACGTTG 59.637 43.478 6.42 0.00 0.00 4.10
395 396 3.253677 TCCGCCACATTTTTAATGACGTT 59.746 39.130 6.42 0.00 0.00 3.99
396 397 2.814919 TCCGCCACATTTTTAATGACGT 59.185 40.909 6.42 0.00 0.00 4.34
397 398 3.126171 TCTCCGCCACATTTTTAATGACG 59.874 43.478 6.42 6.78 0.00 4.35
408 409 4.422073 TCATAATTCTTCTCCGCCACAT 57.578 40.909 0.00 0.00 0.00 3.21
562 563 2.163010 AGTCACGTACATACCGAACTGG 59.837 50.000 0.00 0.00 46.41 4.00
568 569 4.346734 AGTACAAGTCACGTACATACCG 57.653 45.455 0.00 0.00 41.40 4.02
646 651 0.677842 ACGTGTCCGCTCTAAGGTTT 59.322 50.000 0.00 0.00 37.70 3.27
647 652 0.038526 CACGTGTCCGCTCTAAGGTT 60.039 55.000 7.58 0.00 37.70 3.50
648 653 1.585006 CACGTGTCCGCTCTAAGGT 59.415 57.895 7.58 0.00 37.70 3.50
649 654 1.153823 CCACGTGTCCGCTCTAAGG 60.154 63.158 15.65 0.00 37.70 2.69
715 720 8.974408 GTCTTTGTCTTTGTGTAAAACAAAAGT 58.026 29.630 5.29 0.00 44.97 2.66
716 721 8.973378 TGTCTTTGTCTTTGTGTAAAACAAAAG 58.027 29.630 5.29 4.26 44.97 2.27
717 722 8.873215 TGTCTTTGTCTTTGTGTAAAACAAAA 57.127 26.923 5.29 0.00 44.97 2.44
721 726 8.635983 GTCTTTGTCTTTGTCTTTGTGTAAAAC 58.364 33.333 0.00 0.00 0.00 2.43
737 743 6.817765 TGTCTTTGTCTTTGTCTTTGTCTT 57.182 33.333 0.00 0.00 0.00 3.01
738 744 6.817765 TTGTCTTTGTCTTTGTCTTTGTCT 57.182 33.333 0.00 0.00 0.00 3.41
739 745 7.305474 TCTTTGTCTTTGTCTTTGTCTTTGTC 58.695 34.615 0.00 0.00 0.00 3.18
740 746 7.214467 TCTTTGTCTTTGTCTTTGTCTTTGT 57.786 32.000 0.00 0.00 0.00 2.83
741 747 8.519492 TTTCTTTGTCTTTGTCTTTGTCTTTG 57.481 30.769 0.00 0.00 0.00 2.77
872 882 1.424240 GCTCTTTTACGCCTTCGGC 59.576 57.895 0.00 0.00 46.75 5.54
873 883 1.708027 CGCTCTTTTACGCCTTCGG 59.292 57.895 0.00 0.00 40.69 4.30
908 918 2.165437 GTCTTGTCTTCTCTCTGCCGAT 59.835 50.000 0.00 0.00 0.00 4.18
965 975 4.077180 AGGGAGGGGGTCGAGGTC 62.077 72.222 0.00 0.00 0.00 3.85
966 976 4.077180 GAGGGAGGGGGTCGAGGT 62.077 72.222 0.00 0.00 0.00 3.85
967 977 4.862823 GGAGGGAGGGGGTCGAGG 62.863 77.778 0.00 0.00 0.00 4.63
968 978 4.862823 GGGAGGGAGGGGGTCGAG 62.863 77.778 0.00 0.00 0.00 4.04
1379 1403 3.558829 CACCTACGACTACGAATCTGCTA 59.441 47.826 0.00 0.00 42.66 3.49
1382 1406 2.541178 GCCACCTACGACTACGAATCTG 60.541 54.545 0.00 0.00 42.66 2.90
1395 1419 2.456577 ACCATGAAATTGGCCACCTAC 58.543 47.619 3.88 0.00 40.68 3.18
1419 1443 5.359194 TGCAAGAAAGGAACTAGGGATAG 57.641 43.478 0.00 0.00 38.49 2.08
1588 1670 8.592809 TGTAAAATTCTGCCAACAAGGATTATT 58.407 29.630 0.00 0.00 41.22 1.40
1589 1671 8.133024 TGTAAAATTCTGCCAACAAGGATTAT 57.867 30.769 0.00 0.00 41.22 1.28
1735 1840 2.231478 TCAACCACGTCAAAGGCAAAAA 59.769 40.909 0.00 0.00 0.00 1.94
1736 1841 1.819288 TCAACCACGTCAAAGGCAAAA 59.181 42.857 0.00 0.00 0.00 2.44
1737 1842 1.133407 GTCAACCACGTCAAAGGCAAA 59.867 47.619 0.00 0.00 0.00 3.68
1738 1843 0.736053 GTCAACCACGTCAAAGGCAA 59.264 50.000 0.00 0.00 0.00 4.52
1739 1844 1.433053 CGTCAACCACGTCAAAGGCA 61.433 55.000 0.00 0.00 44.07 4.75
1740 1845 1.278637 CGTCAACCACGTCAAAGGC 59.721 57.895 0.00 0.00 44.07 4.35
1749 1854 2.432628 AGCTAGCGCGTCAACCAC 60.433 61.111 9.55 0.00 42.32 4.16
1750 1855 2.432456 CAGCTAGCGCGTCAACCA 60.432 61.111 9.55 0.00 42.32 3.67
1751 1856 0.734942 TAACAGCTAGCGCGTCAACC 60.735 55.000 9.55 0.00 42.32 3.77
1752 1857 0.365859 GTAACAGCTAGCGCGTCAAC 59.634 55.000 9.55 9.07 42.32 3.18
1753 1858 0.038983 TGTAACAGCTAGCGCGTCAA 60.039 50.000 9.55 0.58 42.32 3.18
1754 1859 0.456142 CTGTAACAGCTAGCGCGTCA 60.456 55.000 9.55 5.46 42.32 4.35
1755 1860 0.179171 TCTGTAACAGCTAGCGCGTC 60.179 55.000 9.55 0.00 42.32 5.19
1756 1861 0.456221 ATCTGTAACAGCTAGCGCGT 59.544 50.000 9.55 8.10 42.32 6.01
1757 1862 1.124462 GATCTGTAACAGCTAGCGCG 58.876 55.000 9.55 0.00 42.32 6.86
1758 1863 2.209838 TGATCTGTAACAGCTAGCGC 57.790 50.000 9.55 0.00 0.00 5.92
1759 1864 4.615949 AGAATGATCTGTAACAGCTAGCG 58.384 43.478 9.55 7.05 33.59 4.26
1760 1865 7.206687 AGTTAGAATGATCTGTAACAGCTAGC 58.793 38.462 6.62 6.62 37.10 3.42
1761 1866 9.029243 CAAGTTAGAATGATCTGTAACAGCTAG 57.971 37.037 0.00 0.00 37.10 3.42
1762 1867 8.749354 TCAAGTTAGAATGATCTGTAACAGCTA 58.251 33.333 0.00 0.00 37.10 3.32
1763 1868 7.547370 GTCAAGTTAGAATGATCTGTAACAGCT 59.453 37.037 0.00 0.00 37.10 4.24
1764 1869 7.331934 TGTCAAGTTAGAATGATCTGTAACAGC 59.668 37.037 0.00 0.00 37.10 4.40
1765 1870 8.763049 TGTCAAGTTAGAATGATCTGTAACAG 57.237 34.615 0.00 0.00 37.10 3.16
1766 1871 8.988934 GTTGTCAAGTTAGAATGATCTGTAACA 58.011 33.333 0.00 0.00 37.10 2.41
1767 1872 8.443937 GGTTGTCAAGTTAGAATGATCTGTAAC 58.556 37.037 0.00 0.00 37.10 2.50
1768 1873 8.154203 TGGTTGTCAAGTTAGAATGATCTGTAA 58.846 33.333 0.00 0.00 37.10 2.41
1769 1874 7.676004 TGGTTGTCAAGTTAGAATGATCTGTA 58.324 34.615 0.00 0.00 37.10 2.74
1770 1875 6.533730 TGGTTGTCAAGTTAGAATGATCTGT 58.466 36.000 0.00 0.00 37.10 3.41
1771 1876 7.621428 ATGGTTGTCAAGTTAGAATGATCTG 57.379 36.000 0.00 0.00 37.10 2.90
1772 1877 8.517878 CAAATGGTTGTCAAGTTAGAATGATCT 58.482 33.333 0.00 0.00 39.82 2.75
1773 1878 8.299570 ACAAATGGTTGTCAAGTTAGAATGATC 58.700 33.333 0.00 0.00 45.00 2.92
1774 1879 8.181904 ACAAATGGTTGTCAAGTTAGAATGAT 57.818 30.769 0.00 0.00 45.00 2.45
1775 1880 7.581213 ACAAATGGTTGTCAAGTTAGAATGA 57.419 32.000 0.00 0.00 45.00 2.57
1789 1894 7.385752 AGCTTTCATGACAATAACAAATGGTTG 59.614 33.333 0.00 0.00 40.73 3.77
1790 1895 7.444299 AGCTTTCATGACAATAACAAATGGTT 58.556 30.769 0.00 0.00 43.62 3.67
1791 1896 6.996509 AGCTTTCATGACAATAACAAATGGT 58.003 32.000 0.00 0.00 0.00 3.55
1792 1897 7.318141 AGAGCTTTCATGACAATAACAAATGG 58.682 34.615 0.00 0.00 0.00 3.16
1793 1898 8.752766 AAGAGCTTTCATGACAATAACAAATG 57.247 30.769 0.00 0.00 0.00 2.32
1794 1899 8.031277 GGAAGAGCTTTCATGACAATAACAAAT 58.969 33.333 0.00 0.00 0.00 2.32
1795 1900 7.370383 GGAAGAGCTTTCATGACAATAACAAA 58.630 34.615 0.00 0.00 0.00 2.83
1796 1901 6.071952 GGGAAGAGCTTTCATGACAATAACAA 60.072 38.462 0.00 0.00 0.00 2.83
1797 1902 5.415701 GGGAAGAGCTTTCATGACAATAACA 59.584 40.000 0.00 0.00 0.00 2.41
1798 1903 5.649831 AGGGAAGAGCTTTCATGACAATAAC 59.350 40.000 0.00 0.00 0.00 1.89
1799 1904 5.819991 AGGGAAGAGCTTTCATGACAATAA 58.180 37.500 0.00 0.00 0.00 1.40
1800 1905 5.441718 AGGGAAGAGCTTTCATGACAATA 57.558 39.130 0.00 0.00 0.00 1.90
1801 1906 4.313020 AGGGAAGAGCTTTCATGACAAT 57.687 40.909 0.00 0.00 0.00 2.71
1802 1907 3.795688 AGGGAAGAGCTTTCATGACAA 57.204 42.857 0.00 0.00 0.00 3.18
1803 1908 3.795688 AAGGGAAGAGCTTTCATGACA 57.204 42.857 0.00 0.00 0.00 3.58
1804 1909 5.459536 AAAAAGGGAAGAGCTTTCATGAC 57.540 39.130 0.00 0.00 0.00 3.06
1847 1952 1.845266 ATGATCTGTAACAGCGAGCG 58.155 50.000 0.00 0.00 0.00 5.03
2006 2748 4.890088 TCAAGTTGCCGATTAACACTAGT 58.110 39.130 0.00 0.00 0.00 2.57
2092 2837 6.161855 TGTCAGATCTTTGACTGTTAGTGT 57.838 37.500 14.23 0.00 46.00 3.55
2216 2964 6.441274 CAGTGCTAAAAGCTCTTGAAATCAA 58.559 36.000 0.95 0.00 41.75 2.57
2549 3328 3.423154 GCGCCACCCTTTCAGACG 61.423 66.667 0.00 0.00 0.00 4.18
2788 3922 0.886490 CCACAACCAGAGTGCTCACC 60.886 60.000 1.82 0.00 35.69 4.02
2981 4115 5.128499 TCTTCATCAAACCAAGGCTCAAAAA 59.872 36.000 0.00 0.00 0.00 1.94
2982 4116 4.648762 TCTTCATCAAACCAAGGCTCAAAA 59.351 37.500 0.00 0.00 0.00 2.44
2983 4117 4.214310 TCTTCATCAAACCAAGGCTCAAA 58.786 39.130 0.00 0.00 0.00 2.69
2984 4118 3.831323 TCTTCATCAAACCAAGGCTCAA 58.169 40.909 0.00 0.00 0.00 3.02
2985 4119 3.507162 TCTTCATCAAACCAAGGCTCA 57.493 42.857 0.00 0.00 0.00 4.26
2986 4120 4.219288 ACATTCTTCATCAAACCAAGGCTC 59.781 41.667 0.00 0.00 0.00 4.70
2987 4121 4.154942 ACATTCTTCATCAAACCAAGGCT 58.845 39.130 0.00 0.00 0.00 4.58
2988 4122 4.525912 ACATTCTTCATCAAACCAAGGC 57.474 40.909 0.00 0.00 0.00 4.35
2989 4123 7.790823 AAAAACATTCTTCATCAAACCAAGG 57.209 32.000 0.00 0.00 0.00 3.61
3158 4295 2.888834 AAATTGACAAAGTTGCCGCT 57.111 40.000 0.00 0.00 0.00 5.52
3163 4300 8.064447 CAGTATGTGGAAAATTGACAAAGTTG 57.936 34.615 0.00 0.00 0.00 3.16
3181 4318 5.621193 AGCTTACAAACTTGACCAGTATGT 58.379 37.500 0.00 0.00 32.94 2.29
3258 4395 4.647611 ACACGTCCTCAAAATTGTATGGA 58.352 39.130 0.00 0.00 0.00 3.41
3331 4468 2.093711 CGTCATAACCACCTGTCCATGA 60.094 50.000 0.00 0.00 0.00 3.07
3407 4545 8.167985 ACAAACAAAAACATTCTTCATCAAACG 58.832 29.630 0.00 0.00 0.00 3.60
3491 4629 4.581409 AGTTACCGCCACAATAAACAAAGT 59.419 37.500 0.00 0.00 0.00 2.66
3563 4735 4.196626 ACACATCCTCAAAATTGCATGG 57.803 40.909 0.00 0.00 0.00 3.66
3692 4864 4.201950 GGCATACAAGCATCTTGGTAAGTG 60.202 45.833 10.80 4.01 35.83 3.16
3698 4870 5.518848 TTTATGGCATACAAGCATCTTGG 57.481 39.130 6.72 0.00 35.83 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.