Multiple sequence alignment - TraesCS6D01G375500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G375500 chr6D 100.000 2423 0 0 1 2423 458963781 458966203 0.000000e+00 4475
1 TraesCS6D01G375500 chrUn 99.038 2288 18 3 1 2286 221549586 221547301 0.000000e+00 4100
2 TraesCS6D01G375500 chrUn 98.689 2288 26 3 1 2286 186192584 186190299 0.000000e+00 4056
3 TraesCS6D01G375500 chr7B 98.601 2288 29 3 1 2286 743004894 743007180 0.000000e+00 4045
4 TraesCS6D01G375500 chr7B 96.677 2287 70 3 1 2286 247459880 247462161 0.000000e+00 3797
5 TraesCS6D01G375500 chr7A 97.990 2288 32 5 1 2286 120879288 120881563 0.000000e+00 3958
6 TraesCS6D01G375500 chr3A 97.905 2291 39 7 1 2286 51914990 51917276 0.000000e+00 3956
7 TraesCS6D01G375500 chr3A 94.253 87 5 0 2287 2373 13490533 13490619 1.510000e-27 134
8 TraesCS6D01G375500 chr6A 96.855 2289 63 6 1 2286 79142509 79144791 0.000000e+00 3819
9 TraesCS6D01G375500 chr6A 95.556 90 4 0 2287 2376 14480974 14481063 6.980000e-31 145
10 TraesCS6D01G375500 chr1B 96.108 2287 77 9 1 2284 499826021 499828298 0.000000e+00 3720
11 TraesCS6D01G375500 chr1B 95.294 85 4 0 2287 2371 15150537 15150621 4.200000e-28 135
12 TraesCS6D01G375500 chr2B 94.488 2286 116 8 1 2284 343521093 343523370 0.000000e+00 3515
13 TraesCS6D01G375500 chr2B 92.669 1446 75 18 1 1427 357246208 357244775 0.000000e+00 2054
14 TraesCS6D01G375500 chr2B 91.579 95 6 2 2287 2380 784741446 784741539 1.960000e-26 130
15 TraesCS6D01G375500 chr6B 93.407 91 6 0 2290 2380 36133836 36133746 4.200000e-28 135
16 TraesCS6D01G375500 chr6B 91.489 94 6 2 2287 2380 128924805 128924896 7.030000e-26 128
17 TraesCS6D01G375500 chr2D 94.253 87 5 0 2287 2373 490824413 490824499 1.510000e-27 134
18 TraesCS6D01G375500 chr1D 93.478 92 3 3 2290 2380 215066298 215066209 1.510000e-27 134
19 TraesCS6D01G375500 chr1D 95.238 84 4 0 2290 2373 469813480 469813397 1.510000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G375500 chr6D 458963781 458966203 2422 False 4475 4475 100.000 1 2423 1 chr6D.!!$F1 2422
1 TraesCS6D01G375500 chrUn 221547301 221549586 2285 True 4100 4100 99.038 1 2286 1 chrUn.!!$R2 2285
2 TraesCS6D01G375500 chrUn 186190299 186192584 2285 True 4056 4056 98.689 1 2286 1 chrUn.!!$R1 2285
3 TraesCS6D01G375500 chr7B 743004894 743007180 2286 False 4045 4045 98.601 1 2286 1 chr7B.!!$F2 2285
4 TraesCS6D01G375500 chr7B 247459880 247462161 2281 False 3797 3797 96.677 1 2286 1 chr7B.!!$F1 2285
5 TraesCS6D01G375500 chr7A 120879288 120881563 2275 False 3958 3958 97.990 1 2286 1 chr7A.!!$F1 2285
6 TraesCS6D01G375500 chr3A 51914990 51917276 2286 False 3956 3956 97.905 1 2286 1 chr3A.!!$F2 2285
7 TraesCS6D01G375500 chr6A 79142509 79144791 2282 False 3819 3819 96.855 1 2286 1 chr6A.!!$F2 2285
8 TraesCS6D01G375500 chr1B 499826021 499828298 2277 False 3720 3720 96.108 1 2284 1 chr1B.!!$F2 2283
9 TraesCS6D01G375500 chr2B 343521093 343523370 2277 False 3515 3515 94.488 1 2284 1 chr2B.!!$F1 2283
10 TraesCS6D01G375500 chr2B 357244775 357246208 1433 True 2054 2054 92.669 1 1427 1 chr2B.!!$R1 1426

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 884 2.427593 CCTCCAGAGATTCAGGATCCCT 60.428 54.545 8.55 0.0 31.36 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2352 2383 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
562 563 9.720769 TGGTTTAGTATTAAGGTTCTTCTCTTG 57.279 33.333 0.00 0.00 0.00 3.02
859 884 2.427593 CCTCCAGAGATTCAGGATCCCT 60.428 54.545 8.55 0.00 31.36 4.20
1295 1320 2.192263 GGAAGTGGAACAGAGGATCCT 58.808 52.381 16.13 16.13 41.80 3.24
1395 1421 6.071616 CGGAGGATCTTAGAAGGGAATTAGAG 60.072 46.154 0.00 0.00 33.73 2.43
1396 1422 7.013834 GGAGGATCTTAGAAGGGAATTAGAGA 58.986 42.308 0.00 0.00 33.73 3.10
1512 1541 6.239600 GCCCCTCTTTGATAAGGAAAGTTTTT 60.240 38.462 0.00 0.00 34.35 1.94
1881 1912 4.037446 AGTCTCTTGCTCCTATTAAGCTCG 59.963 45.833 0.00 0.00 40.50 5.03
2286 2317 5.455326 GGTGTATATTCTCATTCTGCCTGGT 60.455 44.000 0.00 0.00 0.00 4.00
2287 2318 5.468072 GTGTATATTCTCATTCTGCCTGGTG 59.532 44.000 0.00 0.00 0.00 4.17
2288 2319 4.785346 ATATTCTCATTCTGCCTGGTGT 57.215 40.909 0.00 0.00 0.00 4.16
2289 2320 5.894298 ATATTCTCATTCTGCCTGGTGTA 57.106 39.130 0.00 0.00 0.00 2.90
2290 2321 4.785346 ATTCTCATTCTGCCTGGTGTAT 57.215 40.909 0.00 0.00 0.00 2.29
2291 2322 5.894298 ATTCTCATTCTGCCTGGTGTATA 57.106 39.130 0.00 0.00 0.00 1.47
2292 2323 5.692115 TTCTCATTCTGCCTGGTGTATAA 57.308 39.130 0.00 0.00 0.00 0.98
2293 2324 5.692115 TCTCATTCTGCCTGGTGTATAAA 57.308 39.130 0.00 0.00 0.00 1.40
2294 2325 6.061022 TCTCATTCTGCCTGGTGTATAAAA 57.939 37.500 0.00 0.00 0.00 1.52
2295 2326 6.480763 TCTCATTCTGCCTGGTGTATAAAAA 58.519 36.000 0.00 0.00 0.00 1.94
2296 2327 7.118723 TCTCATTCTGCCTGGTGTATAAAAAT 58.881 34.615 0.00 0.00 0.00 1.82
2297 2328 8.271458 TCTCATTCTGCCTGGTGTATAAAAATA 58.729 33.333 0.00 0.00 0.00 1.40
2298 2329 8.450578 TCATTCTGCCTGGTGTATAAAAATAG 57.549 34.615 0.00 0.00 0.00 1.73
2299 2330 8.271458 TCATTCTGCCTGGTGTATAAAAATAGA 58.729 33.333 0.00 0.00 0.00 1.98
2300 2331 9.071276 CATTCTGCCTGGTGTATAAAAATAGAT 57.929 33.333 0.00 0.00 0.00 1.98
2301 2332 8.450578 TTCTGCCTGGTGTATAAAAATAGATG 57.549 34.615 0.00 0.00 0.00 2.90
2302 2333 7.573710 TCTGCCTGGTGTATAAAAATAGATGT 58.426 34.615 0.00 0.00 0.00 3.06
2303 2334 8.710239 TCTGCCTGGTGTATAAAAATAGATGTA 58.290 33.333 0.00 0.00 0.00 2.29
2304 2335 9.507329 CTGCCTGGTGTATAAAAATAGATGTAT 57.493 33.333 0.00 0.00 0.00 2.29
2305 2336 9.502091 TGCCTGGTGTATAAAAATAGATGTATC 57.498 33.333 0.00 0.00 0.00 2.24
2306 2337 9.726438 GCCTGGTGTATAAAAATAGATGTATCT 57.274 33.333 0.00 0.00 40.86 1.98
2342 2373 6.929625 ACATCTAGATACATTCATTCCTCCG 58.070 40.000 4.54 0.00 0.00 4.63
2343 2374 6.721668 ACATCTAGATACATTCATTCCTCCGA 59.278 38.462 4.54 0.00 0.00 4.55
2344 2375 6.576662 TCTAGATACATTCATTCCTCCGAC 57.423 41.667 0.00 0.00 0.00 4.79
2345 2376 6.068670 TCTAGATACATTCATTCCTCCGACA 58.931 40.000 0.00 0.00 0.00 4.35
2346 2377 5.614324 AGATACATTCATTCCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
2347 2378 5.605534 AGATACATTCATTCCTCCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
2348 2379 3.703001 ACATTCATTCCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
2349 2380 4.819105 ACATTCATTCCTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
2350 2381 5.359194 ACATTCATTCCTCCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
2351 2382 5.745227 ACATTCATTCCTCCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
2352 2383 6.180472 ACATTCATTCCTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
2353 2384 6.659242 ACATTCATTCCTCCGACAAGTATTTT 59.341 34.615 0.00 0.00 0.00 1.82
2354 2385 6.737254 TTCATTCCTCCGACAAGTATTTTC 57.263 37.500 0.00 0.00 0.00 2.29
2355 2386 4.868171 TCATTCCTCCGACAAGTATTTTCG 59.132 41.667 0.00 0.00 0.00 3.46
2361 2392 2.598589 CGACAAGTATTTTCGGACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2362 2393 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2363 2394 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2364 2395 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2365 2396 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2366 2397 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2367 2398 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2368 2399 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2369 2400 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
2370 2401 0.251297 TTTCGGACGGAGGGAGTACA 60.251 55.000 0.00 0.00 0.00 2.90
2371 2402 0.033796 TTCGGACGGAGGGAGTACAT 60.034 55.000 0.00 0.00 0.00 2.29
2372 2403 0.465097 TCGGACGGAGGGAGTACATC 60.465 60.000 0.00 0.00 0.00 3.06
2373 2404 0.750546 CGGACGGAGGGAGTACATCA 60.751 60.000 0.00 0.00 0.00 3.07
2374 2405 0.745468 GGACGGAGGGAGTACATCAC 59.255 60.000 0.00 0.00 0.00 3.06
2375 2406 1.471119 GACGGAGGGAGTACATCACA 58.529 55.000 0.00 0.00 31.63 3.58
2376 2407 1.405821 GACGGAGGGAGTACATCACAG 59.594 57.143 0.00 0.00 31.63 3.66
2377 2408 0.747255 CGGAGGGAGTACATCACAGG 59.253 60.000 0.00 0.00 31.63 4.00
2378 2409 1.685180 CGGAGGGAGTACATCACAGGA 60.685 57.143 0.00 0.00 31.63 3.86
2379 2410 2.467880 GGAGGGAGTACATCACAGGAA 58.532 52.381 0.00 0.00 31.63 3.36
2380 2411 2.168728 GGAGGGAGTACATCACAGGAAC 59.831 54.545 0.00 0.00 31.63 3.62
2381 2412 3.100671 GAGGGAGTACATCACAGGAACT 58.899 50.000 0.00 0.00 43.88 3.01
2399 2430 7.610580 AGGAACTGAATTGAAATAAAACCCA 57.389 32.000 0.00 0.00 37.18 4.51
2400 2431 7.441836 AGGAACTGAATTGAAATAAAACCCAC 58.558 34.615 0.00 0.00 37.18 4.61
2401 2432 7.290014 AGGAACTGAATTGAAATAAAACCCACT 59.710 33.333 0.00 0.00 37.18 4.00
2402 2433 8.581578 GGAACTGAATTGAAATAAAACCCACTA 58.418 33.333 0.00 0.00 0.00 2.74
2403 2434 9.406828 GAACTGAATTGAAATAAAACCCACTAC 57.593 33.333 0.00 0.00 0.00 2.73
2404 2435 8.706322 ACTGAATTGAAATAAAACCCACTACT 57.294 30.769 0.00 0.00 0.00 2.57
2405 2436 8.793592 ACTGAATTGAAATAAAACCCACTACTC 58.206 33.333 0.00 0.00 0.00 2.59
2406 2437 8.117813 TGAATTGAAATAAAACCCACTACTCC 57.882 34.615 0.00 0.00 0.00 3.85
2407 2438 7.177744 TGAATTGAAATAAAACCCACTACTCCC 59.822 37.037 0.00 0.00 0.00 4.30
2408 2439 5.853572 TGAAATAAAACCCACTACTCCCT 57.146 39.130 0.00 0.00 0.00 4.20
2409 2440 5.812286 TGAAATAAAACCCACTACTCCCTC 58.188 41.667 0.00 0.00 0.00 4.30
2410 2441 5.550403 TGAAATAAAACCCACTACTCCCTCT 59.450 40.000 0.00 0.00 0.00 3.69
2411 2442 5.437191 AATAAAACCCACTACTCCCTCTG 57.563 43.478 0.00 0.00 0.00 3.35
2412 2443 2.417719 AAACCCACTACTCCCTCTGT 57.582 50.000 0.00 0.00 0.00 3.41
2413 2444 2.417719 AACCCACTACTCCCTCTGTT 57.582 50.000 0.00 0.00 0.00 3.16
2414 2445 1.939980 ACCCACTACTCCCTCTGTTC 58.060 55.000 0.00 0.00 0.00 3.18
2415 2446 1.196012 CCCACTACTCCCTCTGTTCC 58.804 60.000 0.00 0.00 0.00 3.62
2416 2447 1.552486 CCCACTACTCCCTCTGTTCCA 60.552 57.143 0.00 0.00 0.00 3.53
2417 2448 2.472029 CCACTACTCCCTCTGTTCCAT 58.528 52.381 0.00 0.00 0.00 3.41
2418 2449 3.630054 CCCACTACTCCCTCTGTTCCATA 60.630 52.174 0.00 0.00 0.00 2.74
2419 2450 4.030913 CCACTACTCCCTCTGTTCCATAA 58.969 47.826 0.00 0.00 0.00 1.90
2420 2451 4.656112 CCACTACTCCCTCTGTTCCATAAT 59.344 45.833 0.00 0.00 0.00 1.28
2421 2452 5.839063 CCACTACTCCCTCTGTTCCATAATA 59.161 44.000 0.00 0.00 0.00 0.98
2422 2453 6.498651 CCACTACTCCCTCTGTTCCATAATAT 59.501 42.308 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
562 563 5.532025 AGAACTTGAATACTAAACGCTGC 57.468 39.130 0.00 0.00 0.00 5.25
1881 1912 0.909623 TGCCCACTTCTACTAAGGCC 59.090 55.000 0.00 0.00 39.72 5.19
2316 2347 8.690884 CGGAGGAATGAATGTATCTAGATGTAT 58.309 37.037 15.79 6.61 0.00 2.29
2317 2348 7.888546 TCGGAGGAATGAATGTATCTAGATGTA 59.111 37.037 15.79 4.44 0.00 2.29
2318 2349 6.721668 TCGGAGGAATGAATGTATCTAGATGT 59.278 38.462 15.79 0.00 0.00 3.06
2319 2350 7.032580 GTCGGAGGAATGAATGTATCTAGATG 58.967 42.308 15.79 0.00 0.00 2.90
2320 2351 6.721668 TGTCGGAGGAATGAATGTATCTAGAT 59.278 38.462 10.73 10.73 0.00 1.98
2321 2352 6.068670 TGTCGGAGGAATGAATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
2322 2353 6.332735 TGTCGGAGGAATGAATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
2323 2354 6.323996 ACTTGTCGGAGGAATGAATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
2324 2355 5.129485 ACTTGTCGGAGGAATGAATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
2325 2356 5.360591 ACTTGTCGGAGGAATGAATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
2326 2357 5.359194 ACTTGTCGGAGGAATGAATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
2327 2358 4.819105 ACTTGTCGGAGGAATGAATGTA 57.181 40.909 0.00 0.00 0.00 2.29
2328 2359 3.703001 ACTTGTCGGAGGAATGAATGT 57.297 42.857 0.00 0.00 0.00 2.71
2329 2360 6.683974 AAATACTTGTCGGAGGAATGAATG 57.316 37.500 0.00 0.00 0.00 2.67
2330 2361 6.037172 CGAAAATACTTGTCGGAGGAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
2331 2362 5.350365 CGAAAATACTTGTCGGAGGAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
2332 2363 4.868171 CGAAAATACTTGTCGGAGGAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2333 2364 5.143916 CGAAAATACTTGTCGGAGGAATG 57.856 43.478 0.00 0.00 0.00 2.67
2341 2372 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
2342 2373 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2343 2374 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2344 2375 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2345 2376 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2346 2377 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2347 2378 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2348 2379 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2349 2380 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2350 2381 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2351 2382 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
2352 2383 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
2353 2384 0.465097 GATGTACTCCCTCCGTCCGA 60.465 60.000 0.00 0.00 0.00 4.55
2354 2385 0.750546 TGATGTACTCCCTCCGTCCG 60.751 60.000 0.00 0.00 0.00 4.79
2355 2386 0.745468 GTGATGTACTCCCTCCGTCC 59.255 60.000 0.00 0.00 0.00 4.79
2356 2387 1.405821 CTGTGATGTACTCCCTCCGTC 59.594 57.143 0.00 0.00 0.00 4.79
2357 2388 1.475403 CTGTGATGTACTCCCTCCGT 58.525 55.000 0.00 0.00 0.00 4.69
2358 2389 0.747255 CCTGTGATGTACTCCCTCCG 59.253 60.000 0.00 0.00 0.00 4.63
2359 2390 2.160721 TCCTGTGATGTACTCCCTCC 57.839 55.000 0.00 0.00 0.00 4.30
2360 2391 3.100671 AGTTCCTGTGATGTACTCCCTC 58.899 50.000 0.00 0.00 0.00 4.30
2361 2392 2.834549 CAGTTCCTGTGATGTACTCCCT 59.165 50.000 0.00 0.00 0.00 4.20
2362 2393 2.832129 TCAGTTCCTGTGATGTACTCCC 59.168 50.000 0.00 0.00 32.61 4.30
2363 2394 4.537135 TTCAGTTCCTGTGATGTACTCC 57.463 45.455 0.00 0.00 32.61 3.85
2364 2395 6.166279 TCAATTCAGTTCCTGTGATGTACTC 58.834 40.000 0.00 0.00 32.61 2.59
2365 2396 6.114187 TCAATTCAGTTCCTGTGATGTACT 57.886 37.500 0.00 0.00 32.61 2.73
2366 2397 6.801539 TTCAATTCAGTTCCTGTGATGTAC 57.198 37.500 0.00 0.00 32.61 2.90
2367 2398 9.513906 TTATTTCAATTCAGTTCCTGTGATGTA 57.486 29.630 0.00 0.00 32.61 2.29
2368 2399 6.906157 ATTTCAATTCAGTTCCTGTGATGT 57.094 33.333 0.00 0.00 32.61 3.06
2369 2400 9.695526 TTTTATTTCAATTCAGTTCCTGTGATG 57.304 29.630 0.00 0.00 32.61 3.07
2370 2401 9.696917 GTTTTATTTCAATTCAGTTCCTGTGAT 57.303 29.630 0.00 0.00 32.61 3.06
2371 2402 8.141268 GGTTTTATTTCAATTCAGTTCCTGTGA 58.859 33.333 0.00 0.00 32.61 3.58
2372 2403 7.384932 GGGTTTTATTTCAATTCAGTTCCTGTG 59.615 37.037 0.00 0.00 32.61 3.66
2373 2404 7.070571 TGGGTTTTATTTCAATTCAGTTCCTGT 59.929 33.333 0.00 0.00 32.61 4.00
2374 2405 7.384932 GTGGGTTTTATTTCAATTCAGTTCCTG 59.615 37.037 0.00 0.00 0.00 3.86
2375 2406 7.290014 AGTGGGTTTTATTTCAATTCAGTTCCT 59.710 33.333 0.00 0.00 0.00 3.36
2376 2407 7.441836 AGTGGGTTTTATTTCAATTCAGTTCC 58.558 34.615 0.00 0.00 0.00 3.62
2377 2408 9.406828 GTAGTGGGTTTTATTTCAATTCAGTTC 57.593 33.333 0.00 0.00 0.00 3.01
2378 2409 9.143155 AGTAGTGGGTTTTATTTCAATTCAGTT 57.857 29.630 0.00 0.00 0.00 3.16
2379 2410 8.706322 AGTAGTGGGTTTTATTTCAATTCAGT 57.294 30.769 0.00 0.00 0.00 3.41
2380 2411 8.244113 GGAGTAGTGGGTTTTATTTCAATTCAG 58.756 37.037 0.00 0.00 0.00 3.02
2381 2412 7.177744 GGGAGTAGTGGGTTTTATTTCAATTCA 59.822 37.037 0.00 0.00 0.00 2.57
2382 2413 7.396339 AGGGAGTAGTGGGTTTTATTTCAATTC 59.604 37.037 0.00 0.00 0.00 2.17
2383 2414 7.246027 AGGGAGTAGTGGGTTTTATTTCAATT 58.754 34.615 0.00 0.00 0.00 2.32
2384 2415 6.800890 AGGGAGTAGTGGGTTTTATTTCAAT 58.199 36.000 0.00 0.00 0.00 2.57
2385 2416 6.045106 AGAGGGAGTAGTGGGTTTTATTTCAA 59.955 38.462 0.00 0.00 0.00 2.69
2386 2417 5.550403 AGAGGGAGTAGTGGGTTTTATTTCA 59.450 40.000 0.00 0.00 0.00 2.69
2387 2418 5.880887 CAGAGGGAGTAGTGGGTTTTATTTC 59.119 44.000 0.00 0.00 0.00 2.17
2388 2419 5.312443 ACAGAGGGAGTAGTGGGTTTTATTT 59.688 40.000 0.00 0.00 0.00 1.40
2389 2420 4.850386 ACAGAGGGAGTAGTGGGTTTTATT 59.150 41.667 0.00 0.00 0.00 1.40
2390 2421 4.436079 ACAGAGGGAGTAGTGGGTTTTAT 58.564 43.478 0.00 0.00 0.00 1.40
2391 2422 3.865571 ACAGAGGGAGTAGTGGGTTTTA 58.134 45.455 0.00 0.00 0.00 1.52
2392 2423 2.702748 ACAGAGGGAGTAGTGGGTTTT 58.297 47.619 0.00 0.00 0.00 2.43
2393 2424 2.417719 ACAGAGGGAGTAGTGGGTTT 57.582 50.000 0.00 0.00 0.00 3.27
2394 2425 2.258109 GAACAGAGGGAGTAGTGGGTT 58.742 52.381 0.00 0.00 0.00 4.11
2395 2426 1.552719 GGAACAGAGGGAGTAGTGGGT 60.553 57.143 0.00 0.00 0.00 4.51
2396 2427 1.196012 GGAACAGAGGGAGTAGTGGG 58.804 60.000 0.00 0.00 0.00 4.61
2397 2428 1.938585 TGGAACAGAGGGAGTAGTGG 58.061 55.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.