Multiple sequence alignment - TraesCS6D01G373400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G373400 chr6D 100.000 5569 0 0 1 5569 458360931 458366499 0.000000e+00 10285.0
1 TraesCS6D01G373400 chr6A 91.357 5565 310 76 1 5507 605233768 605228317 0.000000e+00 7454.0
2 TraesCS6D01G373400 chr6B 91.525 4401 221 59 884 5214 696637573 696641891 0.000000e+00 5921.0
3 TraesCS6D01G373400 chr6B 91.489 893 31 12 9 890 696636675 696637533 0.000000e+00 1186.0
4 TraesCS6D01G373400 chr6B 85.398 226 7 13 5288 5500 696641900 696642112 1.570000e-50 211.0
5 TraesCS6D01G373400 chr1A 93.976 166 10 0 4661 4826 584890775 584890610 9.260000e-63 252.0
6 TraesCS6D01G373400 chr7D 80.000 140 8 12 5219 5356 627397878 627397999 9.940000e-13 86.1
7 TraesCS6D01G373400 chrUn 91.379 58 5 0 4599 4656 97711119 97711176 4.620000e-11 80.5
8 TraesCS6D01G373400 chrUn 91.379 58 5 0 4599 4656 216238829 216238886 4.620000e-11 80.5
9 TraesCS6D01G373400 chrUn 91.379 58 5 0 4599 4656 315594477 315594534 4.620000e-11 80.5
10 TraesCS6D01G373400 chr4A 91.379 58 5 0 4599 4656 706703240 706703183 4.620000e-11 80.5
11 TraesCS6D01G373400 chr4A 89.831 59 4 2 4599 4656 668630574 668630517 2.150000e-09 75.0
12 TraesCS6D01G373400 chr2B 91.379 58 5 0 4599 4656 41940561 41940504 4.620000e-11 80.5
13 TraesCS6D01G373400 chr2B 86.154 65 6 3 4601 4664 617970773 617970711 3.600000e-07 67.6
14 TraesCS6D01G373400 chr5D 87.692 65 6 1 4599 4661 439987743 439987679 2.150000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G373400 chr6D 458360931 458366499 5568 False 10285.000000 10285 100.000000 1 5569 1 chr6D.!!$F1 5568
1 TraesCS6D01G373400 chr6A 605228317 605233768 5451 True 7454.000000 7454 91.357000 1 5507 1 chr6A.!!$R1 5506
2 TraesCS6D01G373400 chr6B 696636675 696642112 5437 False 2439.333333 5921 89.470667 9 5500 3 chr6B.!!$F1 5491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
606 641 0.582005 GCGCGCCGAGATAAGATTTT 59.418 50.000 23.24 0.0 0.00 1.82 F
1233 1324 0.117541 TGCCCTTCCCCTGTACTACA 59.882 55.000 0.00 0.0 0.00 2.74 F
1302 1415 0.394565 ATCTCTGATGCGGCTTACCC 59.605 55.000 0.00 0.0 0.00 3.69 F
2604 2738 0.543749 GCAGGAGTGACAGCCCTTAT 59.456 55.000 0.00 0.0 0.00 1.73 F
2676 2810 0.681243 AGGAAGCCAAAAGGCGGATC 60.681 55.000 0.19 1.7 40.23 3.36 F
3196 3330 1.009675 GTGCAAAGACACGTGGCTG 60.010 57.895 27.87 16.1 30.66 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2559 2693 1.497309 AATCCCAGGAACGGCCAGAA 61.497 55.0 2.24 0.0 40.02 3.02 R
2676 2810 0.176680 CCACCGACCATCTCTCCAAG 59.823 60.0 0.00 0.0 0.00 3.61 R
2787 2921 0.326048 CCCCACACTCCTCCTGATCT 60.326 60.0 0.00 0.0 0.00 2.75 R
3953 4091 0.321021 CTGCTGTCCAAGTGAGCTCT 59.679 55.0 16.19 0.0 33.66 4.09 R
4121 4259 0.979665 CCAGCAGAAGGTTCCTCTCA 59.020 55.0 0.00 0.0 0.00 3.27 R
4872 5029 0.909623 GCTCTAGTGGGGTTTAGCCA 59.090 55.0 0.00 0.0 39.65 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 2.643551 CACGGGCCAGAGAATAACAAT 58.356 47.619 10.86 0.00 0.00 2.71
140 142 9.945904 GTAATAATAATAAACCCAGAGGAGGAG 57.054 37.037 0.00 0.00 36.73 3.69
142 144 3.508952 AATAAACCCAGAGGAGGAGGA 57.491 47.619 0.00 0.00 36.73 3.71
145 147 2.445654 CCCAGAGGAGGAGGAGGC 60.446 72.222 0.00 0.00 33.47 4.70
146 148 2.837291 CCAGAGGAGGAGGAGGCG 60.837 72.222 0.00 0.00 0.00 5.52
147 149 3.535962 CAGAGGAGGAGGAGGCGC 61.536 72.222 0.00 0.00 0.00 6.53
262 268 2.360726 CCGCCGCCCCTTTTAACT 60.361 61.111 0.00 0.00 0.00 2.24
351 357 2.952783 CGTACCGCCGGTGATTCG 60.953 66.667 21.20 14.05 36.19 3.34
606 641 0.582005 GCGCGCCGAGATAAGATTTT 59.418 50.000 23.24 0.00 0.00 1.82
611 646 3.060602 CGCCGAGATAAGATTTTCTCCC 58.939 50.000 7.25 0.38 35.93 4.30
615 650 4.345257 CCGAGATAAGATTTTCTCCCCTCA 59.655 45.833 7.25 0.00 35.93 3.86
618 653 5.039645 AGATAAGATTTTCTCCCCTCACCA 58.960 41.667 0.00 0.00 0.00 4.17
854 893 2.435059 GGAGCTTGTCCCGTCTGC 60.435 66.667 0.00 0.00 39.88 4.26
860 899 3.240134 TTGTCCCGTCTGCTGCTCC 62.240 63.158 0.00 0.00 0.00 4.70
866 905 2.904131 GTCTGCTGCTCCCCCTAC 59.096 66.667 0.00 0.00 0.00 3.18
912 998 8.760569 ACACGATTCAAAACATTTTGTATTTCC 58.239 29.630 14.95 1.98 45.77 3.13
918 1004 7.910304 TCAAAACATTTTGTATTTCCAAACCG 58.090 30.769 14.95 0.00 45.77 4.44
923 1009 3.926821 TTGTATTTCCAAACCGAAGCC 57.073 42.857 0.00 0.00 0.00 4.35
938 1024 2.747460 GCCGGCTGCTGTTCATCA 60.747 61.111 22.15 0.00 36.87 3.07
989 1076 7.691993 ATATTTCCTTGTGTGTACCTATCCT 57.308 36.000 0.00 0.00 0.00 3.24
990 1077 5.416271 TTTCCTTGTGTGTACCTATCCTC 57.584 43.478 0.00 0.00 0.00 3.71
991 1078 3.371965 TCCTTGTGTGTACCTATCCTCC 58.628 50.000 0.00 0.00 0.00 4.30
1000 1087 4.105377 GTGTACCTATCCTCCTACCTACCA 59.895 50.000 0.00 0.00 0.00 3.25
1008 1095 1.008403 TCCTACCTACCAGCTCCTGT 58.992 55.000 0.00 0.00 0.00 4.00
1225 1316 4.372999 GCTGCTTGCCCTTCCCCT 62.373 66.667 0.00 0.00 35.15 4.79
1226 1317 2.362120 CTGCTTGCCCTTCCCCTG 60.362 66.667 0.00 0.00 0.00 4.45
1227 1318 3.185203 TGCTTGCCCTTCCCCTGT 61.185 61.111 0.00 0.00 0.00 4.00
1228 1319 1.850289 TGCTTGCCCTTCCCCTGTA 60.850 57.895 0.00 0.00 0.00 2.74
1229 1320 1.378646 GCTTGCCCTTCCCCTGTAC 60.379 63.158 0.00 0.00 0.00 2.90
1230 1321 1.853250 GCTTGCCCTTCCCCTGTACT 61.853 60.000 0.00 0.00 0.00 2.73
1231 1322 1.580059 CTTGCCCTTCCCCTGTACTA 58.420 55.000 0.00 0.00 0.00 1.82
1232 1323 1.209747 CTTGCCCTTCCCCTGTACTAC 59.790 57.143 0.00 0.00 0.00 2.73
1233 1324 0.117541 TGCCCTTCCCCTGTACTACA 59.882 55.000 0.00 0.00 0.00 2.74
1234 1325 1.282382 GCCCTTCCCCTGTACTACAA 58.718 55.000 0.00 0.00 0.00 2.41
1235 1326 1.844497 GCCCTTCCCCTGTACTACAAT 59.156 52.381 0.00 0.00 0.00 2.71
1243 1334 3.440173 CCCCTGTACTACAATTTGTGCTG 59.560 47.826 12.30 5.15 0.00 4.41
1249 1349 7.328277 TGTACTACAATTTGTGCTGTTCTTT 57.672 32.000 12.30 0.00 0.00 2.52
1257 1357 3.698029 TGTGCTGTTCTTTCTGCTTTC 57.302 42.857 0.00 0.00 34.27 2.62
1258 1358 3.282021 TGTGCTGTTCTTTCTGCTTTCT 58.718 40.909 0.00 0.00 34.27 2.52
1259 1359 3.065786 TGTGCTGTTCTTTCTGCTTTCTG 59.934 43.478 0.00 0.00 34.27 3.02
1260 1360 2.033801 TGCTGTTCTTTCTGCTTTCTGC 59.966 45.455 0.00 0.00 43.25 4.26
1261 1361 2.292845 GCTGTTCTTTCTGCTTTCTGCT 59.707 45.455 0.00 0.00 43.37 4.24
1262 1362 3.852572 GCTGTTCTTTCTGCTTTCTGCTG 60.853 47.826 0.00 0.00 43.37 4.41
1278 1389 1.078918 CTGTGCGGCATTCTCCTCA 60.079 57.895 5.72 0.00 0.00 3.86
1280 1391 1.219124 GTGCGGCATTCTCCTCAGA 59.781 57.895 5.72 0.00 0.00 3.27
1296 1409 1.361993 AGACGATCTCTGATGCGGC 59.638 57.895 0.00 0.00 0.00 6.53
1302 1415 0.394565 ATCTCTGATGCGGCTTACCC 59.605 55.000 0.00 0.00 0.00 3.69
1428 1541 1.202382 GCCAATGCTTCATGCTCCTTC 60.202 52.381 0.00 0.00 43.37 3.46
1435 1548 3.638160 TGCTTCATGCTCCTTCTGTTTTT 59.362 39.130 0.00 0.00 43.37 1.94
1700 1834 4.384647 GGCATCAGGAAGAAGGTTCAGTAT 60.385 45.833 0.00 0.00 0.00 2.12
2202 2336 1.812571 CGCCACCAGAGCTTAAATGTT 59.187 47.619 0.00 0.00 0.00 2.71
2209 2343 4.258543 CCAGAGCTTAAATGTTAACCCGA 58.741 43.478 2.48 0.00 0.00 5.14
2604 2738 0.543749 GCAGGAGTGACAGCCCTTAT 59.456 55.000 0.00 0.00 0.00 1.73
2676 2810 0.681243 AGGAAGCCAAAAGGCGGATC 60.681 55.000 0.19 1.70 40.23 3.36
2895 3029 4.831155 TCTCGGTCTCTTCCAGTTTCTTTA 59.169 41.667 0.00 0.00 0.00 1.85
3067 3201 6.599638 ACCTGGAGTTTTGTCTGCTAATAATC 59.400 38.462 0.00 0.00 0.00 1.75
3087 3221 2.373169 TCCACTCAAGAATGGAAGTGCT 59.627 45.455 0.00 0.00 42.14 4.40
3091 3225 3.181451 ACTCAAGAATGGAAGTGCTGTGA 60.181 43.478 0.00 0.00 0.00 3.58
3097 3231 4.940046 AGAATGGAAGTGCTGTGACTATTG 59.060 41.667 0.00 0.00 0.00 1.90
3113 3247 1.180029 ATTGGTGATGGCAGTGAAGC 58.820 50.000 0.00 0.00 0.00 3.86
3135 3269 6.532365 GCATCTAGCTATTTTACACTGGAC 57.468 41.667 0.00 0.00 41.15 4.02
3144 3278 5.964958 ATTTTACACTGGACAATCCACAG 57.035 39.130 0.00 0.00 42.67 3.66
3146 3280 2.847327 ACACTGGACAATCCACAGAG 57.153 50.000 0.00 0.00 42.67 3.35
3148 3282 2.037772 ACACTGGACAATCCACAGAGAC 59.962 50.000 0.00 0.00 42.67 3.36
3149 3283 2.301296 CACTGGACAATCCACAGAGACT 59.699 50.000 0.00 0.00 42.67 3.24
3164 3298 5.698089 CACAGAGACTTACTTTGCTTGATGA 59.302 40.000 0.00 0.00 34.59 2.92
3172 3306 7.108194 ACTTACTTTGCTTGATGATGATGAGA 58.892 34.615 0.00 0.00 0.00 3.27
3178 3312 4.275936 TGCTTGATGATGATGAGAATGCTG 59.724 41.667 0.00 0.00 0.00 4.41
3188 3322 2.574450 TGAGAATGCTGTGCAAAGACA 58.426 42.857 8.49 5.74 43.62 3.41
3190 3324 1.265095 AGAATGCTGTGCAAAGACACG 59.735 47.619 8.49 0.00 43.62 4.49
3196 3330 1.009675 GTGCAAAGACACGTGGCTG 60.010 57.895 27.87 16.10 30.66 4.85
3242 3376 3.281332 GCATCCCTGCCAAGGTAAA 57.719 52.632 0.00 0.00 42.74 2.01
3244 3378 2.110578 GCATCCCTGCCAAGGTAAATT 58.889 47.619 0.00 0.00 42.74 1.82
3316 3451 7.044181 TCAGACCTGTAGATTTCTTATTGCAG 58.956 38.462 0.00 0.00 0.00 4.41
3317 3452 6.259608 CAGACCTGTAGATTTCTTATTGCAGG 59.740 42.308 0.00 0.00 45.43 4.85
3320 3455 7.396540 CCTGTAGATTTCTTATTGCAGGTTT 57.603 36.000 0.00 0.00 37.90 3.27
3321 3456 7.830739 CCTGTAGATTTCTTATTGCAGGTTTT 58.169 34.615 0.00 0.00 37.90 2.43
3322 3457 8.306761 CCTGTAGATTTCTTATTGCAGGTTTTT 58.693 33.333 0.00 0.00 37.90 1.94
3353 3488 4.439057 TGCGGGTGTTATTCATACTTCTC 58.561 43.478 0.00 0.00 0.00 2.87
3355 3490 5.361571 TGCGGGTGTTATTCATACTTCTCTA 59.638 40.000 0.00 0.00 0.00 2.43
3357 3492 6.461231 GCGGGTGTTATTCATACTTCTCTAGT 60.461 42.308 0.00 0.00 41.04 2.57
3399 3534 1.270839 TGCTCTGTTCTGTTAGGGTGC 60.271 52.381 0.00 0.00 0.00 5.01
3469 3604 1.151450 CCAACCAAGCCCTGTGTCT 59.849 57.895 0.00 0.00 0.00 3.41
3520 3655 8.582657 TCTGTGATAATAATAGGAGGCTACTC 57.417 38.462 0.20 0.00 43.20 2.59
3544 3679 8.908786 TCTACTCAACTGAAAATTTCATCACT 57.091 30.769 9.02 0.00 39.30 3.41
3570 3705 2.073816 CCCACGTAAGCTGTTAACCAG 58.926 52.381 2.48 2.16 44.53 4.00
3789 3927 4.976224 TCGTTGACGATTATCCAGAAGA 57.024 40.909 1.52 0.00 44.22 2.87
3914 4052 1.448013 GAGGGAAAGGCGGTCGAAG 60.448 63.158 0.00 0.00 0.00 3.79
3935 4073 1.484038 AGAGGCTTCTCTTCGATGCT 58.516 50.000 0.00 0.00 44.95 3.79
3943 4081 1.269723 TCTCTTCGATGCTGTCAACGT 59.730 47.619 0.00 0.00 39.18 3.99
3953 4091 2.964925 GTCAACGTGGCGCTCACA 60.965 61.111 22.90 5.38 46.36 3.58
4190 4334 4.961511 GCCACCGCTGACACGACA 62.962 66.667 0.00 0.00 34.06 4.35
4437 4587 4.846779 TGTGTGCCTTTTCCTGATTTAC 57.153 40.909 0.00 0.00 0.00 2.01
4444 4594 4.527944 CCTTTTCCTGATTTACCCTCTCC 58.472 47.826 0.00 0.00 0.00 3.71
4445 4595 4.228438 CCTTTTCCTGATTTACCCTCTCCT 59.772 45.833 0.00 0.00 0.00 3.69
4487 4637 8.397906 GTGATGCTGTAATTAGCTGATTGTTTA 58.602 33.333 13.66 0.00 44.01 2.01
4499 4649 4.675114 GCTGATTGTTTACCGTTTTGACAG 59.325 41.667 0.00 0.00 0.00 3.51
4537 4691 8.517878 CAGTGTTGAAGGTTATCATCATCTTTT 58.482 33.333 0.00 0.00 33.10 2.27
4542 4696 9.519191 TTGAAGGTTATCATCATCTTTTCTTCA 57.481 29.630 0.00 0.00 36.25 3.02
4614 4769 7.538678 GCTGTTGGTGTTACTTGAATTAGAATG 59.461 37.037 0.00 0.00 0.00 2.67
4692 4847 8.942338 AAGACAGTAACATATCGCTTGATTTA 57.058 30.769 0.00 0.00 33.40 1.40
4742 4899 1.142465 GCCATGATCTGATCCACAGGT 59.858 52.381 14.71 0.00 45.76 4.00
4796 4953 7.538678 CACAAGGCACTGTAATCTTATTTTGTC 59.461 37.037 0.00 0.00 40.86 3.18
4821 4978 3.921119 TCCATGTCAACTGTGATTTGC 57.079 42.857 0.00 0.00 35.80 3.68
4827 4984 4.397420 TGTCAACTGTGATTTGCCTATGT 58.603 39.130 0.00 0.00 35.80 2.29
4857 5014 5.689383 TCAGAGCACCATTTGTTTACTTC 57.311 39.130 0.00 0.00 0.00 3.01
4865 5022 4.202212 ACCATTTGTTTACTTCCAACCAGC 60.202 41.667 0.00 0.00 0.00 4.85
4871 5028 3.926058 TTACTTCCAACCAGCCCTATC 57.074 47.619 0.00 0.00 0.00 2.08
4872 5029 1.972588 ACTTCCAACCAGCCCTATCT 58.027 50.000 0.00 0.00 0.00 1.98
5032 5198 0.107214 TATTTGGGGGCTCGCAGAAG 60.107 55.000 2.61 0.00 37.15 2.85
5084 5253 8.794553 TCTCTCGATCTTGAGTTAGTTTTAGTT 58.205 33.333 10.32 0.00 37.28 2.24
5167 5338 0.174162 GCATTTGATCCCTGGTGTGC 59.826 55.000 0.00 0.00 0.00 4.57
5217 5388 4.970860 ACAATCTGACCCATATCCTCAG 57.029 45.455 0.00 0.00 33.94 3.35
5218 5389 4.302067 ACAATCTGACCCATATCCTCAGT 58.698 43.478 0.00 0.00 34.26 3.41
5219 5390 5.467738 ACAATCTGACCCATATCCTCAGTA 58.532 41.667 0.00 0.00 34.26 2.74
5220 5391 6.087456 ACAATCTGACCCATATCCTCAGTAT 58.913 40.000 0.00 0.00 34.26 2.12
5223 5394 5.970289 TCTGACCCATATCCTCAGTATCTT 58.030 41.667 0.00 0.00 34.26 2.40
5224 5395 5.777223 TCTGACCCATATCCTCAGTATCTTG 59.223 44.000 0.00 0.00 34.26 3.02
5225 5396 4.284490 TGACCCATATCCTCAGTATCTTGC 59.716 45.833 0.00 0.00 0.00 4.01
5226 5397 4.497516 ACCCATATCCTCAGTATCTTGCT 58.502 43.478 0.00 0.00 0.00 3.91
5227 5398 4.285517 ACCCATATCCTCAGTATCTTGCTG 59.714 45.833 0.00 0.00 35.43 4.41
5228 5399 4.252073 CCATATCCTCAGTATCTTGCTGC 58.748 47.826 0.00 0.00 34.21 5.25
5229 5400 2.926778 ATCCTCAGTATCTTGCTGCC 57.073 50.000 0.00 0.00 34.21 4.85
5230 5401 1.571955 TCCTCAGTATCTTGCTGCCA 58.428 50.000 0.00 0.00 34.21 4.92
5231 5402 1.483827 TCCTCAGTATCTTGCTGCCAG 59.516 52.381 0.00 0.00 34.21 4.85
5232 5403 1.297664 CTCAGTATCTTGCTGCCAGC 58.702 55.000 10.45 10.45 42.82 4.85
5233 5404 0.907486 TCAGTATCTTGCTGCCAGCT 59.093 50.000 18.96 0.00 42.97 4.24
5234 5405 1.015109 CAGTATCTTGCTGCCAGCTG 58.985 55.000 18.96 6.78 42.97 4.24
5235 5406 0.907486 AGTATCTTGCTGCCAGCTGA 59.093 50.000 18.96 15.79 42.97 4.26
5236 5407 1.280133 AGTATCTTGCTGCCAGCTGAA 59.720 47.619 18.96 3.64 42.97 3.02
5237 5408 2.086869 GTATCTTGCTGCCAGCTGAAA 58.913 47.619 18.96 2.86 42.97 2.69
5238 5409 1.624336 ATCTTGCTGCCAGCTGAAAA 58.376 45.000 18.96 2.47 42.97 2.29
5239 5410 0.670162 TCTTGCTGCCAGCTGAAAAC 59.330 50.000 18.96 2.34 42.97 2.43
5240 5411 0.386476 CTTGCTGCCAGCTGAAAACA 59.614 50.000 18.96 5.27 42.97 2.83
5249 5420 2.540931 CCAGCTGAAAACAATGTGTTGC 59.459 45.455 17.39 0.00 40.14 4.17
5254 5425 4.422840 CTGAAAACAATGTGTTGCTGTGA 58.577 39.130 0.00 0.00 40.14 3.58
5255 5426 5.008619 TGAAAACAATGTGTTGCTGTGAT 57.991 34.783 0.00 0.00 40.14 3.06
5256 5427 5.417811 TGAAAACAATGTGTTGCTGTGATT 58.582 33.333 0.00 0.00 40.14 2.57
5257 5428 5.291371 TGAAAACAATGTGTTGCTGTGATTG 59.709 36.000 0.00 0.00 40.14 2.67
5258 5429 3.374220 ACAATGTGTTGCTGTGATTGG 57.626 42.857 0.00 0.00 38.96 3.16
5260 5431 1.999648 ATGTGTTGCTGTGATTGGGT 58.000 45.000 0.00 0.00 0.00 4.51
5261 5432 1.774110 TGTGTTGCTGTGATTGGGTT 58.226 45.000 0.00 0.00 0.00 4.11
5262 5433 1.408340 TGTGTTGCTGTGATTGGGTTG 59.592 47.619 0.00 0.00 0.00 3.77
5266 5437 2.198827 TGCTGTGATTGGGTTGTAGG 57.801 50.000 0.00 0.00 0.00 3.18
5267 5438 1.702401 TGCTGTGATTGGGTTGTAGGA 59.298 47.619 0.00 0.00 0.00 2.94
5268 5439 2.308570 TGCTGTGATTGGGTTGTAGGAT 59.691 45.455 0.00 0.00 0.00 3.24
5273 5444 4.079253 GTGATTGGGTTGTAGGATTGTGT 58.921 43.478 0.00 0.00 0.00 3.72
5279 5451 2.030274 GGTTGTAGGATTGTGTTGTGCC 60.030 50.000 0.00 0.00 0.00 5.01
5352 5525 2.681064 CCAACAGGGCCCACATGG 60.681 66.667 27.56 23.73 34.56 3.66
5468 5650 7.383687 CAGTGAGGTTTACTTATTACTGTGGA 58.616 38.462 0.00 0.00 32.02 4.02
5512 5697 2.344872 GCCAAGCCAAAGCCAAGG 59.655 61.111 0.00 0.00 41.25 3.61
5517 5702 2.344872 GCCAAAGCCAAGGCCAAG 59.655 61.111 5.01 0.00 45.18 3.61
5518 5703 3.062639 CCAAAGCCAAGGCCAAGG 58.937 61.111 5.01 7.44 43.17 3.61
5535 5720 3.698820 GCCAGGGCCAAAAGGCTG 61.699 66.667 18.30 8.31 43.70 4.85
5536 5721 2.999063 CCAGGGCCAAAAGGCTGG 60.999 66.667 6.18 7.13 41.91 4.85
5537 5722 2.999063 CAGGGCCAAAAGGCTGGG 60.999 66.667 6.18 0.00 41.91 4.45
5538 5723 4.321515 AGGGCCAAAAGGCTGGGG 62.322 66.667 6.18 0.00 41.91 4.96
5539 5724 4.638895 GGGCCAAAAGGCTGGGGT 62.639 66.667 4.39 0.00 41.91 4.95
5540 5725 3.313524 GGCCAAAAGGCTGGGGTG 61.314 66.667 0.00 0.00 36.92 4.61
5541 5726 2.524148 GCCAAAAGGCTGGGGTGT 60.524 61.111 0.00 0.00 36.92 4.16
5542 5727 2.140138 GCCAAAAGGCTGGGGTGTT 61.140 57.895 0.00 0.00 36.92 3.32
5543 5728 1.695114 GCCAAAAGGCTGGGGTGTTT 61.695 55.000 0.00 0.00 36.92 2.83
5544 5729 0.106521 CCAAAAGGCTGGGGTGTTTG 59.893 55.000 0.00 0.00 32.32 2.93
5545 5730 0.829990 CAAAAGGCTGGGGTGTTTGT 59.170 50.000 0.00 0.00 0.00 2.83
5546 5731 0.829990 AAAAGGCTGGGGTGTTTGTG 59.170 50.000 0.00 0.00 0.00 3.33
5547 5732 0.325203 AAAGGCTGGGGTGTTTGTGT 60.325 50.000 0.00 0.00 0.00 3.72
5548 5733 1.042559 AAGGCTGGGGTGTTTGTGTG 61.043 55.000 0.00 0.00 0.00 3.82
5549 5734 2.498056 GGCTGGGGTGTTTGTGTGG 61.498 63.158 0.00 0.00 0.00 4.17
5550 5735 3.128375 CTGGGGTGTTTGTGTGGC 58.872 61.111 0.00 0.00 0.00 5.01
5551 5736 1.455587 CTGGGGTGTTTGTGTGGCT 60.456 57.895 0.00 0.00 0.00 4.75
5552 5737 1.737355 CTGGGGTGTTTGTGTGGCTG 61.737 60.000 0.00 0.00 0.00 4.85
5553 5738 1.756561 GGGGTGTTTGTGTGGCTGT 60.757 57.895 0.00 0.00 0.00 4.40
5554 5739 1.326951 GGGGTGTTTGTGTGGCTGTT 61.327 55.000 0.00 0.00 0.00 3.16
5555 5740 0.179113 GGGTGTTTGTGTGGCTGTTG 60.179 55.000 0.00 0.00 0.00 3.33
5556 5741 0.814457 GGTGTTTGTGTGGCTGTTGA 59.186 50.000 0.00 0.00 0.00 3.18
5557 5742 1.408702 GGTGTTTGTGTGGCTGTTGAT 59.591 47.619 0.00 0.00 0.00 2.57
5558 5743 2.543653 GGTGTTTGTGTGGCTGTTGATC 60.544 50.000 0.00 0.00 0.00 2.92
5559 5744 1.680735 TGTTTGTGTGGCTGTTGATCC 59.319 47.619 0.00 0.00 0.00 3.36
5560 5745 1.956477 GTTTGTGTGGCTGTTGATCCT 59.044 47.619 0.00 0.00 0.00 3.24
5561 5746 2.362077 GTTTGTGTGGCTGTTGATCCTT 59.638 45.455 0.00 0.00 0.00 3.36
5562 5747 2.363306 TGTGTGGCTGTTGATCCTTT 57.637 45.000 0.00 0.00 0.00 3.11
5563 5748 2.665165 TGTGTGGCTGTTGATCCTTTT 58.335 42.857 0.00 0.00 0.00 2.27
5564 5749 2.622942 TGTGTGGCTGTTGATCCTTTTC 59.377 45.455 0.00 0.00 0.00 2.29
5565 5750 2.622942 GTGTGGCTGTTGATCCTTTTCA 59.377 45.455 0.00 0.00 0.00 2.69
5566 5751 2.886523 TGTGGCTGTTGATCCTTTTCAG 59.113 45.455 0.00 0.00 0.00 3.02
5567 5752 2.229784 GTGGCTGTTGATCCTTTTCAGG 59.770 50.000 0.00 0.00 42.50 3.86
5568 5753 1.203287 GGCTGTTGATCCTTTTCAGGC 59.797 52.381 0.00 0.00 40.58 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 2.445654 GCCTCCTCCTCCTCTGGG 60.446 72.222 0.00 0.00 0.00 4.45
606 641 2.363018 CGCTCTGGTGAGGGGAGA 60.363 66.667 2.72 0.00 45.84 3.71
938 1024 1.891150 CAAAATCTGAAGCAGGGCACT 59.109 47.619 0.00 0.00 31.51 4.40
978 1065 4.318633 TGGTAGGTAGGAGGATAGGTACA 58.681 47.826 0.00 0.00 0.00 2.90
981 1068 2.110365 GCTGGTAGGTAGGAGGATAGGT 59.890 54.545 0.00 0.00 0.00 3.08
983 1070 3.562609 GGAGCTGGTAGGTAGGAGGATAG 60.563 56.522 0.00 0.00 0.00 2.08
986 1073 0.556747 GGAGCTGGTAGGTAGGAGGA 59.443 60.000 0.00 0.00 0.00 3.71
988 1075 1.063567 ACAGGAGCTGGTAGGTAGGAG 60.064 57.143 0.00 0.00 35.51 3.69
989 1076 1.008403 ACAGGAGCTGGTAGGTAGGA 58.992 55.000 0.00 0.00 35.51 2.94
990 1077 2.750141 TACAGGAGCTGGTAGGTAGG 57.250 55.000 0.00 0.00 35.51 3.18
991 1078 4.215908 TCAATACAGGAGCTGGTAGGTAG 58.784 47.826 0.00 0.00 35.51 3.18
1000 1087 0.179000 CGGCCTTCAATACAGGAGCT 59.821 55.000 0.00 0.00 32.41 4.09
1008 1095 0.606944 AACAACCGCGGCCTTCAATA 60.607 50.000 28.58 0.00 0.00 1.90
1211 1302 1.378646 GTACAGGGGAAGGGCAAGC 60.379 63.158 0.00 0.00 0.00 4.01
1214 1305 0.117541 TGTAGTACAGGGGAAGGGCA 59.882 55.000 0.00 0.00 0.00 5.36
1222 1313 4.072131 ACAGCACAAATTGTAGTACAGGG 58.928 43.478 2.68 0.00 0.00 4.45
1224 1315 6.545504 AGAACAGCACAAATTGTAGTACAG 57.454 37.500 2.68 0.00 0.00 2.74
1225 1316 6.935741 AAGAACAGCACAAATTGTAGTACA 57.064 33.333 0.00 0.00 0.00 2.90
1226 1317 7.587757 CAGAAAGAACAGCACAAATTGTAGTAC 59.412 37.037 0.00 0.00 0.00 2.73
1227 1318 7.639039 CAGAAAGAACAGCACAAATTGTAGTA 58.361 34.615 0.00 0.00 0.00 1.82
1228 1319 6.498304 CAGAAAGAACAGCACAAATTGTAGT 58.502 36.000 0.00 0.00 0.00 2.73
1229 1320 5.400485 GCAGAAAGAACAGCACAAATTGTAG 59.600 40.000 0.00 0.00 0.00 2.74
1230 1321 5.067674 AGCAGAAAGAACAGCACAAATTGTA 59.932 36.000 0.00 0.00 0.00 2.41
1231 1322 4.114794 GCAGAAAGAACAGCACAAATTGT 58.885 39.130 0.00 0.00 0.00 2.71
1232 1323 4.365723 AGCAGAAAGAACAGCACAAATTG 58.634 39.130 0.00 0.00 0.00 2.32
1233 1324 4.660789 AGCAGAAAGAACAGCACAAATT 57.339 36.364 0.00 0.00 0.00 1.82
1234 1325 4.660789 AAGCAGAAAGAACAGCACAAAT 57.339 36.364 0.00 0.00 0.00 2.32
1235 1326 4.158394 AGAAAGCAGAAAGAACAGCACAAA 59.842 37.500 0.00 0.00 0.00 2.83
1259 1359 2.437359 AGGAGAATGCCGCACAGC 60.437 61.111 0.00 0.00 0.00 4.40
1260 1360 1.078918 TGAGGAGAATGCCGCACAG 60.079 57.895 0.00 0.00 32.57 3.66
1261 1361 1.078918 CTGAGGAGAATGCCGCACA 60.079 57.895 0.00 0.00 33.98 4.57
1262 1362 1.086634 GTCTGAGGAGAATGCCGCAC 61.087 60.000 0.00 0.00 33.98 5.34
1278 1389 1.106351 AGCCGCATCAGAGATCGTCT 61.106 55.000 0.00 0.00 35.00 4.18
1280 1391 1.032794 TAAGCCGCATCAGAGATCGT 58.967 50.000 0.00 0.00 0.00 3.73
1295 1408 1.081442 GCAAAGCACACGGGTAAGC 60.081 57.895 0.00 0.00 0.00 3.09
1296 1409 0.238289 CTGCAAAGCACACGGGTAAG 59.762 55.000 0.00 0.00 33.79 2.34
1302 1415 1.597937 GGAGAAACTGCAAAGCACACG 60.598 52.381 0.00 0.00 33.79 4.49
1309 1422 1.172180 CCAGCCGGAGAAACTGCAAA 61.172 55.000 5.05 0.00 0.00 3.68
1344 1457 4.631377 TGATTACTCGCCATCTTGAAACTG 59.369 41.667 0.00 0.00 0.00 3.16
1668 1802 3.614092 TCTTCCTGATGCCAAATCAGAC 58.386 45.455 15.27 0.00 46.25 3.51
1679 1813 5.104776 TCCATACTGAACCTTCTTCCTGATG 60.105 44.000 0.00 0.00 0.00 3.07
1700 1834 2.162338 ATTTCGGCCGTCGTCTTCCA 62.162 55.000 27.15 0.00 40.32 3.53
1860 1994 1.827969 ACAAGGGACATTCTCCTCTCG 59.172 52.381 0.00 0.00 39.39 4.04
2556 2690 1.550130 CCCAGGAACGGCCAGAAGTA 61.550 60.000 2.24 0.00 40.02 2.24
2559 2693 1.497309 AATCCCAGGAACGGCCAGAA 61.497 55.000 2.24 0.00 40.02 3.02
2676 2810 0.176680 CCACCGACCATCTCTCCAAG 59.823 60.000 0.00 0.00 0.00 3.61
2787 2921 0.326048 CCCCACACTCCTCCTGATCT 60.326 60.000 0.00 0.00 0.00 2.75
2895 3029 2.334023 GACTCCCTGCCTCCATAAGAT 58.666 52.381 0.00 0.00 0.00 2.40
3067 3201 2.486982 CAGCACTTCCATTCTTGAGTGG 59.513 50.000 5.90 5.90 39.80 4.00
3087 3221 2.305635 ACTGCCATCACCAATAGTCACA 59.694 45.455 0.00 0.00 0.00 3.58
3091 3225 3.614092 CTTCACTGCCATCACCAATAGT 58.386 45.455 0.00 0.00 0.00 2.12
3097 3231 0.737219 GATGCTTCACTGCCATCACC 59.263 55.000 0.00 0.00 0.00 4.02
3113 3247 8.668510 ATTGTCCAGTGTAAAATAGCTAGATG 57.331 34.615 0.00 0.00 0.00 2.90
3135 3269 4.999950 AGCAAAGTAAGTCTCTGTGGATTG 59.000 41.667 0.00 0.00 0.00 2.67
3144 3278 6.974932 TCATCATCAAGCAAAGTAAGTCTC 57.025 37.500 0.00 0.00 0.00 3.36
3146 3280 7.279536 TCTCATCATCATCAAGCAAAGTAAGTC 59.720 37.037 0.00 0.00 0.00 3.01
3148 3282 7.549615 TCTCATCATCATCAAGCAAAGTAAG 57.450 36.000 0.00 0.00 0.00 2.34
3149 3283 7.926674 TTCTCATCATCATCAAGCAAAGTAA 57.073 32.000 0.00 0.00 0.00 2.24
3164 3298 4.014406 TCTTTGCACAGCATTCTCATCAT 58.986 39.130 0.00 0.00 38.76 2.45
3172 3306 1.024271 ACGTGTCTTTGCACAGCATT 58.976 45.000 0.00 0.00 38.76 3.56
3178 3312 1.009675 CAGCCACGTGTCTTTGCAC 60.010 57.895 15.65 0.00 36.12 4.57
3188 3322 0.814010 GTGACAAGAACCAGCCACGT 60.814 55.000 0.00 0.00 0.00 4.49
3190 3324 0.663153 GTGTGACAAGAACCAGCCAC 59.337 55.000 0.00 0.00 0.00 5.01
3291 3426 6.946340 TGCAATAAGAAATCTACAGGTCTGA 58.054 36.000 4.84 0.00 0.00 3.27
3327 3462 5.968528 AGTATGAATAACACCCGCAAAAA 57.031 34.783 0.00 0.00 0.00 1.94
3328 3463 5.708230 AGAAGTATGAATAACACCCGCAAAA 59.292 36.000 0.00 0.00 0.00 2.44
3329 3464 5.250200 AGAAGTATGAATAACACCCGCAAA 58.750 37.500 0.00 0.00 0.00 3.68
3330 3465 4.839121 AGAAGTATGAATAACACCCGCAA 58.161 39.130 0.00 0.00 0.00 4.85
3331 3466 4.161565 AGAGAAGTATGAATAACACCCGCA 59.838 41.667 0.00 0.00 0.00 5.69
3332 3467 4.694339 AGAGAAGTATGAATAACACCCGC 58.306 43.478 0.00 0.00 0.00 6.13
3333 3468 7.040473 ACTAGAGAAGTATGAATAACACCCG 57.960 40.000 0.00 0.00 36.36 5.28
3334 3469 8.008513 TGACTAGAGAAGTATGAATAACACCC 57.991 38.462 0.00 0.00 39.07 4.61
3375 3510 3.883489 ACCCTAACAGAACAGAGCAAAAC 59.117 43.478 0.00 0.00 0.00 2.43
3399 3534 2.555757 CCAAGACTTGGCAAAGGAGAAG 59.444 50.000 21.10 0.00 45.17 2.85
3469 3604 0.974010 GTCCATCCGGGTCCAGTACA 60.974 60.000 0.00 0.00 38.11 2.90
3520 3655 7.536622 GCAGTGATGAAATTTTCAGTTGAGTAG 59.463 37.037 16.34 4.33 43.98 2.57
3544 3679 1.078497 CAGCTTACGTGGGGATGCA 60.078 57.895 0.00 0.00 0.00 3.96
3604 3739 4.766373 AGACACAATGAATGCCATTACACA 59.234 37.500 0.00 0.00 43.27 3.72
3789 3927 1.693062 CATGCCAGCTGAGGAGACTAT 59.307 52.381 17.39 0.00 44.43 2.12
3820 3958 0.474184 AGGGCTGGCTAATACGCAAT 59.526 50.000 0.00 0.00 0.00 3.56
3929 4067 2.476051 GCCACGTTGACAGCATCG 59.524 61.111 0.00 0.00 41.65 3.84
3935 4073 2.964925 GTGAGCGCCACGTTGACA 60.965 61.111 2.29 0.00 35.86 3.58
3953 4091 0.321021 CTGCTGTCCAAGTGAGCTCT 59.679 55.000 16.19 0.00 33.66 4.09
4016 4154 7.502895 CAGGAGGAATCATCATCTTGATCTTTT 59.497 37.037 0.00 0.00 43.67 2.27
4025 4163 5.306678 GGAGTTACAGGAGGAATCATCATCT 59.693 44.000 0.00 0.00 36.62 2.90
4121 4259 0.979665 CCAGCAGAAGGTTCCTCTCA 59.020 55.000 0.00 0.00 0.00 3.27
4181 4319 3.207547 CTCCAGCCGTGTCGTGTCA 62.208 63.158 0.00 0.00 0.00 3.58
4190 4334 1.006102 CTCAAACGTCTCCAGCCGT 60.006 57.895 0.00 0.00 39.32 5.68
4437 4587 5.013599 CCCCTATATCAGAAAAAGGAGAGGG 59.986 48.000 0.00 0.00 39.77 4.30
4444 4594 6.206243 CAGCATCACCCCTATATCAGAAAAAG 59.794 42.308 0.00 0.00 0.00 2.27
4445 4595 6.064060 CAGCATCACCCCTATATCAGAAAAA 58.936 40.000 0.00 0.00 0.00 1.94
4487 4637 4.825085 ACATGGTTTATCTGTCAAAACGGT 59.175 37.500 0.00 0.00 36.63 4.83
4499 4649 5.473504 ACCTTCAACACTGACATGGTTTATC 59.526 40.000 0.00 0.00 30.22 1.75
4537 4691 7.375834 ACTGACTTGTGTCGTATTAATGAAGA 58.624 34.615 0.00 0.00 45.70 2.87
4575 4730 3.006967 CACCAACAGCTTACTACAGGAGT 59.993 47.826 0.00 0.00 42.69 3.85
4614 4769 6.651643 CCTTCTCCATCTTGAATGAGATCATC 59.348 42.308 0.00 0.00 34.20 2.92
4633 4788 6.560711 TGTTTGTTTTCTAGTTTGCCTTCTC 58.439 36.000 0.00 0.00 0.00 2.87
4692 4847 5.030147 TGACTTATCCTATTGGACCACACT 58.970 41.667 0.00 0.00 46.51 3.55
4742 4899 2.165167 CTGGGCTGCTTCTTTTGATGA 58.835 47.619 0.00 0.00 0.00 2.92
4796 4953 3.339253 TCACAGTTGACATGGATCCTG 57.661 47.619 14.23 11.14 0.00 3.86
4865 5022 1.143073 GTGGGGTTTAGCCAGATAGGG 59.857 57.143 0.00 0.00 39.65 3.53
4871 5028 1.134371 GCTCTAGTGGGGTTTAGCCAG 60.134 57.143 0.00 0.00 39.65 4.85
4872 5029 0.909623 GCTCTAGTGGGGTTTAGCCA 59.090 55.000 0.00 0.00 39.65 4.75
4874 5031 2.781681 TTGCTCTAGTGGGGTTTAGC 57.218 50.000 0.00 0.00 0.00 3.09
4875 5032 4.394729 TGTTTTGCTCTAGTGGGGTTTAG 58.605 43.478 0.00 0.00 0.00 1.85
4876 5033 4.440826 TGTTTTGCTCTAGTGGGGTTTA 57.559 40.909 0.00 0.00 0.00 2.01
4904 5061 4.620803 GCCTTGCTGCTAAGACAGTTACTA 60.621 45.833 0.00 0.00 39.96 1.82
5032 5198 6.586344 TCCTCTCATCTCATGTGGTTTTATC 58.414 40.000 0.00 0.00 0.00 1.75
5063 5230 8.522178 ACTCAACTAAAACTAACTCAAGATCG 57.478 34.615 0.00 0.00 0.00 3.69
5084 5253 2.890311 CCATTGGCAACTTTGGTACTCA 59.110 45.455 0.00 0.00 35.40 3.41
5090 5259 2.389962 CCATCCATTGGCAACTTTGG 57.610 50.000 11.33 11.33 39.09 3.28
5121 5292 3.056328 GCCGTGGTTCCAGCTTCC 61.056 66.667 0.00 0.00 0.00 3.46
5167 5338 2.238353 CTGGGACTGCACGAAACAG 58.762 57.895 0.00 0.00 41.08 3.16
5217 5388 1.742761 TTCAGCTGGCAGCAAGATAC 58.257 50.000 38.09 10.06 45.56 2.24
5218 5389 2.489329 GTTTTCAGCTGGCAGCAAGATA 59.511 45.455 38.09 26.10 45.56 1.98
5219 5390 1.271656 GTTTTCAGCTGGCAGCAAGAT 59.728 47.619 38.09 17.61 45.56 2.40
5220 5391 0.670162 GTTTTCAGCTGGCAGCAAGA 59.330 50.000 38.09 30.85 45.56 3.02
5223 5394 1.042229 ATTGTTTTCAGCTGGCAGCA 58.958 45.000 38.09 18.79 45.56 4.41
5224 5395 1.269936 ACATTGTTTTCAGCTGGCAGC 60.270 47.619 31.56 31.56 42.84 5.25
5225 5396 2.223876 ACACATTGTTTTCAGCTGGCAG 60.224 45.455 15.13 10.94 0.00 4.85
5226 5397 1.755959 ACACATTGTTTTCAGCTGGCA 59.244 42.857 15.13 5.52 0.00 4.92
5227 5398 2.514205 ACACATTGTTTTCAGCTGGC 57.486 45.000 15.13 2.80 0.00 4.85
5228 5399 2.540931 GCAACACATTGTTTTCAGCTGG 59.459 45.455 15.13 0.00 38.77 4.85
5229 5400 3.244345 CAGCAACACATTGTTTTCAGCTG 59.756 43.478 7.63 7.63 42.78 4.24
5230 5401 3.119029 ACAGCAACACATTGTTTTCAGCT 60.119 39.130 0.00 0.00 38.77 4.24
5231 5402 3.000523 CACAGCAACACATTGTTTTCAGC 59.999 43.478 0.00 0.00 38.77 4.26
5232 5403 4.422840 TCACAGCAACACATTGTTTTCAG 58.577 39.130 0.00 0.00 38.77 3.02
5233 5404 4.446994 TCACAGCAACACATTGTTTTCA 57.553 36.364 0.00 0.00 38.77 2.69
5234 5405 5.276963 CCAATCACAGCAACACATTGTTTTC 60.277 40.000 0.00 0.00 38.77 2.29
5235 5406 4.571580 CCAATCACAGCAACACATTGTTTT 59.428 37.500 0.00 0.00 38.77 2.43
5236 5407 4.121317 CCAATCACAGCAACACATTGTTT 58.879 39.130 0.00 0.00 38.77 2.83
5237 5408 3.493002 CCCAATCACAGCAACACATTGTT 60.493 43.478 0.00 0.00 42.08 2.83
5238 5409 2.036217 CCCAATCACAGCAACACATTGT 59.964 45.455 0.00 0.00 38.17 2.71
5239 5410 2.036217 ACCCAATCACAGCAACACATTG 59.964 45.455 0.00 0.00 38.99 2.82
5240 5411 2.318908 ACCCAATCACAGCAACACATT 58.681 42.857 0.00 0.00 0.00 2.71
5249 5420 4.156556 CACAATCCTACAACCCAATCACAG 59.843 45.833 0.00 0.00 0.00 3.66
5254 5425 4.280677 CACAACACAATCCTACAACCCAAT 59.719 41.667 0.00 0.00 0.00 3.16
5255 5426 3.634448 CACAACACAATCCTACAACCCAA 59.366 43.478 0.00 0.00 0.00 4.12
5256 5427 3.218453 CACAACACAATCCTACAACCCA 58.782 45.455 0.00 0.00 0.00 4.51
5257 5428 2.030274 GCACAACACAATCCTACAACCC 60.030 50.000 0.00 0.00 0.00 4.11
5258 5429 2.030274 GGCACAACACAATCCTACAACC 60.030 50.000 0.00 0.00 0.00 3.77
5260 5431 2.884012 CAGGCACAACACAATCCTACAA 59.116 45.455 0.00 0.00 0.00 2.41
5261 5432 2.503331 CAGGCACAACACAATCCTACA 58.497 47.619 0.00 0.00 0.00 2.74
5262 5433 1.812571 CCAGGCACAACACAATCCTAC 59.187 52.381 0.00 0.00 0.00 3.18
5266 5437 1.001378 GTGACCAGGCACAACACAATC 60.001 52.381 0.00 0.00 38.63 2.67
5267 5438 1.032014 GTGACCAGGCACAACACAAT 58.968 50.000 0.00 0.00 38.63 2.71
5268 5439 0.034574 AGTGACCAGGCACAACACAA 60.035 50.000 6.38 0.00 41.19 3.33
5273 5444 1.142667 TGAATGAGTGACCAGGCACAA 59.857 47.619 6.38 0.00 41.19 3.33
5361 5534 1.030488 CCTTCATGAGGCAGCCACTG 61.030 60.000 15.80 7.90 39.09 3.66
5362 5535 1.302285 CCTTCATGAGGCAGCCACT 59.698 57.895 15.80 0.00 39.09 4.00
5363 5536 3.915575 CCTTCATGAGGCAGCCAC 58.084 61.111 15.80 8.35 39.09 5.01
5377 5550 3.522750 GGAGATGGATAGATCATGGCCTT 59.477 47.826 3.32 0.00 0.00 4.35
5389 5563 3.040477 TGCAGTCATGTGGAGATGGATA 58.960 45.455 0.00 0.00 0.00 2.59
5419 5598 3.181437 ACAGCAATGGAGATGATGCCATA 60.181 43.478 0.00 0.00 43.85 2.74
5468 5650 0.191064 TCTTCCTCCAGGTCCACACT 59.809 55.000 0.00 0.00 36.34 3.55
5495 5680 2.344872 CCTTGGCTTTGGCTTGGC 59.655 61.111 0.00 0.00 38.73 4.52
5525 5710 0.106521 CAAACACCCCAGCCTTTTGG 59.893 55.000 0.00 0.00 44.18 3.28
5526 5711 0.829990 ACAAACACCCCAGCCTTTTG 59.170 50.000 0.00 0.00 34.10 2.44
5527 5712 0.829990 CACAAACACCCCAGCCTTTT 59.170 50.000 0.00 0.00 0.00 2.27
5528 5713 0.325203 ACACAAACACCCCAGCCTTT 60.325 50.000 0.00 0.00 0.00 3.11
5529 5714 1.042559 CACACAAACACCCCAGCCTT 61.043 55.000 0.00 0.00 0.00 4.35
5530 5715 1.455587 CACACAAACACCCCAGCCT 60.456 57.895 0.00 0.00 0.00 4.58
5531 5716 2.498056 CCACACAAACACCCCAGCC 61.498 63.158 0.00 0.00 0.00 4.85
5532 5717 3.128375 CCACACAAACACCCCAGC 58.872 61.111 0.00 0.00 0.00 4.85
5533 5718 1.455587 AGCCACACAAACACCCCAG 60.456 57.895 0.00 0.00 0.00 4.45
5534 5719 1.756172 CAGCCACACAAACACCCCA 60.756 57.895 0.00 0.00 0.00 4.96
5535 5720 1.326951 AACAGCCACACAAACACCCC 61.327 55.000 0.00 0.00 0.00 4.95
5536 5721 0.179113 CAACAGCCACACAAACACCC 60.179 55.000 0.00 0.00 0.00 4.61
5537 5722 0.814457 TCAACAGCCACACAAACACC 59.186 50.000 0.00 0.00 0.00 4.16
5538 5723 2.543653 GGATCAACAGCCACACAAACAC 60.544 50.000 0.00 0.00 0.00 3.32
5539 5724 1.680735 GGATCAACAGCCACACAAACA 59.319 47.619 0.00 0.00 0.00 2.83
5540 5725 1.956477 AGGATCAACAGCCACACAAAC 59.044 47.619 0.00 0.00 0.00 2.93
5541 5726 2.363306 AGGATCAACAGCCACACAAA 57.637 45.000 0.00 0.00 0.00 2.83
5542 5727 2.363306 AAGGATCAACAGCCACACAA 57.637 45.000 0.00 0.00 0.00 3.33
5543 5728 2.363306 AAAGGATCAACAGCCACACA 57.637 45.000 0.00 0.00 0.00 3.72
5544 5729 2.622942 TGAAAAGGATCAACAGCCACAC 59.377 45.455 0.00 0.00 0.00 3.82
5545 5730 2.886523 CTGAAAAGGATCAACAGCCACA 59.113 45.455 0.00 0.00 0.00 4.17
5546 5731 2.229784 CCTGAAAAGGATCAACAGCCAC 59.770 50.000 0.00 0.00 0.00 5.01
5547 5732 2.517959 CCTGAAAAGGATCAACAGCCA 58.482 47.619 0.00 0.00 0.00 4.75
5548 5733 1.203287 GCCTGAAAAGGATCAACAGCC 59.797 52.381 0.00 0.00 0.00 4.85
5549 5734 2.643933 GCCTGAAAAGGATCAACAGC 57.356 50.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.