Multiple sequence alignment - TraesCS6D01G373200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G373200 chr6D 100.000 3617 0 0 2125 5741 458059171 458055555 0.000000e+00 6680.0
1 TraesCS6D01G373200 chr6D 100.000 1830 0 0 1 1830 458061295 458059466 0.000000e+00 3380.0
2 TraesCS6D01G373200 chr6D 91.724 1752 145 0 3990 5741 458027290 458025539 0.000000e+00 2433.0
3 TraesCS6D01G373200 chr6D 89.977 1756 164 8 3990 5741 458017951 458016204 0.000000e+00 2257.0
4 TraesCS6D01G373200 chr6D 88.712 1754 191 4 3990 5741 457697422 457695674 0.000000e+00 2135.0
5 TraesCS6D01G373200 chr6D 88.874 1528 153 12 3983 5508 458049438 458047926 0.000000e+00 1864.0
6 TraesCS6D01G373200 chr6D 94.434 1078 26 17 2944 3990 447544621 447543547 0.000000e+00 1628.0
7 TraesCS6D01G373200 chr6D 87.993 1216 108 20 595 1799 458029365 458028177 0.000000e+00 1402.0
8 TraesCS6D01G373200 chr6D 87.956 822 96 2 1003 1824 458019420 458018602 0.000000e+00 966.0
9 TraesCS6D01G373200 chr6D 84.032 1002 123 20 834 1826 457700107 457699134 0.000000e+00 929.0
10 TraesCS6D01G373200 chr6D 83.526 777 100 10 817 1588 458050280 458049527 0.000000e+00 701.0
11 TraesCS6D01G373200 chr6D 87.327 434 46 3 1402 1826 458012794 458012361 6.690000e-134 488.0
12 TraesCS6D01G373200 chr6D 88.793 348 25 6 23 358 458029740 458029395 1.150000e-111 414.0
13 TraesCS6D01G373200 chr6D 93.722 223 6 4 2723 2944 450007776 450007991 1.540000e-85 327.0
14 TraesCS6D01G373200 chr6D 92.511 227 11 4 2722 2944 85547463 85547687 2.580000e-83 320.0
15 TraesCS6D01G373200 chr6D 93.889 180 10 1 381 560 27732873 27733051 2.640000e-68 270.0
16 TraesCS6D01G373200 chr6D 95.294 170 7 1 381 549 332550117 332550286 9.480000e-68 268.0
17 TraesCS6D01G373200 chr6D 93.865 163 10 0 387 549 93627705 93627543 4.440000e-61 246.0
18 TraesCS6D01G373200 chr6D 98.000 50 1 0 512 561 27732907 27732858 2.850000e-13 87.9
19 TraesCS6D01G373200 chr6D 86.364 66 5 2 611 672 458050552 458050487 1.030000e-07 69.4
20 TraesCS6D01G373200 chr6B 91.569 1708 140 4 3990 5695 696177279 696175574 0.000000e+00 2353.0
21 TraesCS6D01G373200 chr6B 90.612 1715 161 0 3990 5704 696342912 696341198 0.000000e+00 2276.0
22 TraesCS6D01G373200 chr6B 89.579 1756 175 6 3990 5741 696151012 696149261 0.000000e+00 2222.0
23 TraesCS6D01G373200 chr6B 88.648 1709 186 4 3990 5697 696303462 696301761 0.000000e+00 2074.0
24 TraesCS6D01G373200 chr6B 88.400 1069 113 6 768 1826 696251456 696250389 0.000000e+00 1277.0
25 TraesCS6D01G373200 chr6B 87.680 974 104 6 842 1800 696345436 696344464 0.000000e+00 1120.0
26 TraesCS6D01G373200 chr6B 88.249 834 95 2 993 1826 696152502 696151672 0.000000e+00 994.0
27 TraesCS6D01G373200 chr6B 87.304 827 102 2 993 1819 696179056 696178233 0.000000e+00 942.0
28 TraesCS6D01G373200 chr6B 91.944 360 27 2 5337 5695 696173189 696172831 2.390000e-138 503.0
29 TraesCS6D01G373200 chr6B 81.703 552 80 18 2183 2721 696362800 696362257 1.900000e-119 440.0
30 TraesCS6D01G373200 chr6B 84.356 326 18 15 23 347 696244569 696244276 7.280000e-74 289.0
31 TraesCS6D01G373200 chr6B 95.238 147 5 1 588 734 696251594 696251450 1.240000e-56 231.0
32 TraesCS6D01G373200 chr6B 83.744 203 15 8 157 358 696345691 696345506 5.910000e-40 176.0
33 TraesCS6D01G373200 chr6B 90.769 130 12 0 218 347 696251769 696251640 2.130000e-39 174.0
34 TraesCS6D01G373200 chr6B 87.919 149 12 5 23 167 696347456 696347310 2.750000e-38 171.0
35 TraesCS6D01G373200 chr6B 91.304 115 5 4 28 141 696359478 696359368 9.960000e-33 152.0
36 TraesCS6D01G373200 chr6A 88.813 1752 192 4 3990 5740 604609426 604607678 0.000000e+00 2146.0
37 TraesCS6D01G373200 chr6A 90.972 864 75 2 964 1824 604610915 604610052 0.000000e+00 1160.0
38 TraesCS6D01G373200 chr6A 89.865 296 16 6 23 318 604618601 604618320 9.090000e-98 368.0
39 TraesCS6D01G373200 chr6A 91.139 158 10 1 816 969 604618081 604617924 1.620000e-50 211.0
40 TraesCS6D01G373200 chr6A 87.500 112 7 4 595 701 604618245 604618136 7.810000e-24 122.0
41 TraesCS6D01G373200 chr7D 93.860 1075 26 12 2944 3989 1797252 1796189 0.000000e+00 1583.0
42 TraesCS6D01G373200 chr7D 97.556 532 4 4 3462 3989 582047658 582048184 0.000000e+00 902.0
43 TraesCS6D01G373200 chr7D 97.701 522 11 1 2944 3465 605705364 605705884 0.000000e+00 896.0
44 TraesCS6D01G373200 chr7D 96.450 169 6 0 381 549 101500884 101500716 4.380000e-71 279.0
45 TraesCS6D01G373200 chr1D 92.698 945 29 9 2944 3860 5161083 5160151 0.000000e+00 1327.0
46 TraesCS6D01G373200 chr1D 95.421 808 22 7 2944 3742 298596159 298595358 0.000000e+00 1273.0
47 TraesCS6D01G373200 chr1D 97.744 532 7 2 3462 3990 16536918 16536389 0.000000e+00 911.0
48 TraesCS6D01G373200 chr1D 97.510 522 13 0 2944 3465 412775744 412775223 0.000000e+00 893.0
49 TraesCS6D01G373200 chr1D 93.805 226 9 4 2722 2944 408939665 408939442 9.220000e-88 335.0
50 TraesCS6D01G373200 chr1D 95.055 182 8 1 381 561 6780546 6780727 9.410000e-73 285.0
51 TraesCS6D01G373200 chr1D 95.484 155 7 0 395 549 131413730 131413576 1.240000e-61 248.0
52 TraesCS6D01G373200 chr1D 92.308 169 12 1 381 548 34937050 34936882 7.430000e-59 239.0
53 TraesCS6D01G373200 chr1D 93.103 87 6 0 381 467 469057393 469057307 1.680000e-25 128.0
54 TraesCS6D01G373200 chr1D 97.368 38 1 0 512 549 34937016 34937053 1.340000e-06 65.8
55 TraesCS6D01G373200 chr1D 97.222 36 1 0 512 547 469057359 469057394 1.730000e-05 62.1
56 TraesCS6D01G373200 chr1D 100.000 32 0 0 536 567 131413564 131413533 6.210000e-05 60.2
57 TraesCS6D01G373200 chr5D 95.352 796 15 6 2944 3719 546457947 546457154 0.000000e+00 1245.0
58 TraesCS6D01G373200 chr5D 94.848 757 30 6 2944 3693 286455828 286456582 0.000000e+00 1173.0
59 TraesCS6D01G373200 chr5D 97.388 536 7 3 3462 3994 510375583 510375052 0.000000e+00 905.0
60 TraesCS6D01G373200 chr5D 97.015 536 11 3 3462 3992 63116613 63117148 0.000000e+00 896.0
61 TraesCS6D01G373200 chr5D 95.714 210 6 1 2723 2929 520167671 520167880 9.220000e-88 335.0
62 TraesCS6D01G373200 chr5D 94.170 223 6 4 2722 2944 31091848 31091633 3.320000e-87 333.0
63 TraesCS6D01G373200 chr5D 93.370 181 12 0 381 561 431902332 431902152 9.480000e-68 268.0
64 TraesCS6D01G373200 chr5D 93.491 169 11 0 381 549 253983256 253983088 9.550000e-63 252.0
65 TraesCS6D01G373200 chr5D 92.899 169 11 1 381 549 522214847 522214680 1.600000e-60 244.0
66 TraesCS6D01G373200 chr3D 98.493 531 2 3 3462 3989 39223251 39222724 0.000000e+00 931.0
67 TraesCS6D01G373200 chr3D 95.266 169 7 1 381 549 592865676 592865509 3.410000e-67 267.0
68 TraesCS6D01G373200 chr3D 95.266 169 7 1 381 549 592871416 592871249 3.410000e-67 267.0
69 TraesCS6D01G373200 chr3D 91.099 191 14 3 359 547 582579780 582579969 7.380000e-64 255.0
70 TraesCS6D01G373200 chr4D 98.276 522 9 0 2944 3465 25182769 25183290 0.000000e+00 915.0
71 TraesCS6D01G373200 chr4D 95.580 181 7 1 381 561 46211043 46211222 7.280000e-74 289.0
72 TraesCS6D01G373200 chr2D 97.893 522 8 3 2944 3465 89884519 89884001 0.000000e+00 900.0
73 TraesCS6D01G373200 chr2D 98.062 516 9 1 2950 3465 612457666 612458180 0.000000e+00 896.0
74 TraesCS6D01G373200 chr2D 97.510 522 13 0 2944 3465 625542500 625541979 0.000000e+00 893.0
75 TraesCS6D01G373200 chr2D 88.588 701 39 12 2948 3630 91260692 91261369 0.000000e+00 813.0
76 TraesCS6D01G373200 chr2D 94.170 223 6 3 2722 2944 51152889 51153104 3.320000e-87 333.0
77 TraesCS6D01G373200 chr2D 94.836 213 6 2 2722 2930 38662865 38663076 1.540000e-85 327.0
78 TraesCS6D01G373200 chr2D 92.411 224 11 6 2722 2944 47688456 47688238 1.200000e-81 315.0
79 TraesCS6D01G373200 chr2D 97.041 169 5 0 381 549 59443112 59443280 9.410000e-73 285.0
80 TraesCS6D01G373200 chr2D 96.450 169 6 0 381 549 523641402 523641234 4.380000e-71 279.0
81 TraesCS6D01G373200 chrUn 95.261 211 6 2 2722 2929 475029303 475029512 1.190000e-86 331.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G373200 chr6D 458055555 458061295 5740 True 5030.000000 6680 100.000000 1 5741 2 chr6D.!!$R8 5740
1 TraesCS6D01G373200 chr6D 447543547 447544621 1074 True 1628.000000 1628 94.434000 2944 3990 1 chr6D.!!$R3 1046
2 TraesCS6D01G373200 chr6D 457695674 457700107 4433 True 1532.000000 2135 86.372000 834 5741 2 chr6D.!!$R4 4907
3 TraesCS6D01G373200 chr6D 458025539 458029740 4201 True 1416.333333 2433 89.503333 23 5741 3 chr6D.!!$R6 5718
4 TraesCS6D01G373200 chr6D 458012361 458019420 7059 True 1237.000000 2257 88.420000 1003 5741 3 chr6D.!!$R5 4738
5 TraesCS6D01G373200 chr6D 458047926 458050552 2626 True 878.133333 1864 86.254667 611 5508 3 chr6D.!!$R7 4897
6 TraesCS6D01G373200 chr6B 696301761 696303462 1701 True 2074.000000 2074 88.648000 3990 5697 1 chr6B.!!$R2 1707
7 TraesCS6D01G373200 chr6B 696149261 696152502 3241 True 1608.000000 2222 88.914000 993 5741 2 chr6B.!!$R3 4748
8 TraesCS6D01G373200 chr6B 696172831 696179056 6225 True 1266.000000 2353 90.272333 993 5695 3 chr6B.!!$R4 4702
9 TraesCS6D01G373200 chr6B 696341198 696347456 6258 True 935.750000 2276 87.488750 23 5704 4 chr6B.!!$R6 5681
10 TraesCS6D01G373200 chr6B 696250389 696251769 1380 True 560.666667 1277 91.469000 218 1826 3 chr6B.!!$R5 1608
11 TraesCS6D01G373200 chr6B 696359368 696362800 3432 True 296.000000 440 86.503500 28 2721 2 chr6B.!!$R7 2693
12 TraesCS6D01G373200 chr6A 604607678 604610915 3237 True 1653.000000 2146 89.892500 964 5740 2 chr6A.!!$R1 4776
13 TraesCS6D01G373200 chr6A 604617924 604618601 677 True 233.666667 368 89.501333 23 969 3 chr6A.!!$R2 946
14 TraesCS6D01G373200 chr7D 1796189 1797252 1063 True 1583.000000 1583 93.860000 2944 3989 1 chr7D.!!$R1 1045
15 TraesCS6D01G373200 chr7D 582047658 582048184 526 False 902.000000 902 97.556000 3462 3989 1 chr7D.!!$F1 527
16 TraesCS6D01G373200 chr7D 605705364 605705884 520 False 896.000000 896 97.701000 2944 3465 1 chr7D.!!$F2 521
17 TraesCS6D01G373200 chr1D 5160151 5161083 932 True 1327.000000 1327 92.698000 2944 3860 1 chr1D.!!$R1 916
18 TraesCS6D01G373200 chr1D 298595358 298596159 801 True 1273.000000 1273 95.421000 2944 3742 1 chr1D.!!$R4 798
19 TraesCS6D01G373200 chr1D 16536389 16536918 529 True 911.000000 911 97.744000 3462 3990 1 chr1D.!!$R2 528
20 TraesCS6D01G373200 chr1D 412775223 412775744 521 True 893.000000 893 97.510000 2944 3465 1 chr1D.!!$R6 521
21 TraesCS6D01G373200 chr5D 546457154 546457947 793 True 1245.000000 1245 95.352000 2944 3719 1 chr5D.!!$R6 775
22 TraesCS6D01G373200 chr5D 286455828 286456582 754 False 1173.000000 1173 94.848000 2944 3693 1 chr5D.!!$F2 749
23 TraesCS6D01G373200 chr5D 510375052 510375583 531 True 905.000000 905 97.388000 3462 3994 1 chr5D.!!$R4 532
24 TraesCS6D01G373200 chr5D 63116613 63117148 535 False 896.000000 896 97.015000 3462 3992 1 chr5D.!!$F1 530
25 TraesCS6D01G373200 chr3D 39222724 39223251 527 True 931.000000 931 98.493000 3462 3989 1 chr3D.!!$R1 527
26 TraesCS6D01G373200 chr4D 25182769 25183290 521 False 915.000000 915 98.276000 2944 3465 1 chr4D.!!$F1 521
27 TraesCS6D01G373200 chr2D 89884001 89884519 518 True 900.000000 900 97.893000 2944 3465 1 chr2D.!!$R2 521
28 TraesCS6D01G373200 chr2D 612457666 612458180 514 False 896.000000 896 98.062000 2950 3465 1 chr2D.!!$F5 515
29 TraesCS6D01G373200 chr2D 625541979 625542500 521 True 893.000000 893 97.510000 2944 3465 1 chr2D.!!$R4 521
30 TraesCS6D01G373200 chr2D 91260692 91261369 677 False 813.000000 813 88.588000 2948 3630 1 chr2D.!!$F4 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 2180 0.107945 AGATCCAACGGCTGAGAAGC 60.108 55.0 0.00 0.0 0.00 3.86 F
538 2182 0.107945 ATCCAACGGCTGAGAAGCTC 60.108 55.0 0.00 0.0 34.73 4.09 F
556 2200 0.188587 TCCCGGAGCACCAGATATCT 59.811 55.0 0.73 0.0 35.59 1.98 F
1367 3110 0.373716 CGTGGAATCGCTAGCCAAAC 59.626 55.0 9.66 0.0 32.68 2.93 F
2760 5730 0.110869 TTTGTCCCGGTTGGTAAGGG 59.889 55.0 0.00 0.0 46.40 3.95 F
2798 5768 0.108472 GAACCGGGACTAAAGGGTCG 60.108 60.0 6.32 0.0 37.12 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 3495 1.202463 CCCAGCTGTCGATACCTTCTG 60.202 57.143 13.81 0.0 0.00 3.02 R
2460 5376 2.293122 TCATGCGCACTTTGCTTACTTT 59.707 40.909 14.90 0.0 42.25 2.66 R
2514 5455 6.323266 AGCTACAAGTACTGAACGAGTTATG 58.677 40.000 0.00 0.0 35.96 1.90 R
2779 5749 0.108472 CGACCCTTTAGTCCCGGTTC 60.108 60.000 0.00 0.0 32.91 3.62 R
4213 7413 1.417517 AGCACATCAGGACAACAGTCA 59.582 47.619 0.00 0.0 33.90 3.41 R
4761 10159 1.002251 GGAGAGACAGTCGCCGAATAG 60.002 57.143 0.00 0.0 35.14 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.876309 AGAAGTTTGCAGGGTAAGGAA 57.124 42.857 0.00 0.00 0.00 3.36
21 22 3.756117 AGAAGTTTGCAGGGTAAGGAAG 58.244 45.455 0.00 0.00 0.00 3.46
61 63 9.495572 AGATGGAAAAAGAAGAAGTAACAGTAG 57.504 33.333 0.00 0.00 0.00 2.57
99 103 8.213679 TCTAGTGAAATTGGCTAGATTAAGCAT 58.786 33.333 0.00 0.00 44.64 3.79
174 1808 2.093783 GCTAACACTCGGTTATGTGCAC 59.906 50.000 10.75 10.75 41.00 4.57
214 1848 8.416329 AGACTTTCAGAATTGCAACTTTTACAT 58.584 29.630 0.00 0.00 0.00 2.29
238 1872 1.272807 TAGGGCTACACCAGAACCAC 58.727 55.000 0.00 0.00 42.05 4.16
242 1876 1.338200 GGCTACACCAGAACCACTCAG 60.338 57.143 0.00 0.00 38.86 3.35
244 1878 1.344438 CTACACCAGAACCACTCAGCA 59.656 52.381 0.00 0.00 0.00 4.41
268 1902 4.890581 ACGAAGTCTAGCATTGGATACTCT 59.109 41.667 0.00 0.00 29.74 3.24
305 1939 1.180029 CAAATCTTGGCCTCCAGTGG 58.820 55.000 3.32 1.40 33.81 4.00
349 1993 0.647410 CGCTCAATTACTCCACTGCG 59.353 55.000 0.00 0.00 36.41 5.18
350 1994 0.375106 GCTCAATTACTCCACTGCGC 59.625 55.000 0.00 0.00 0.00 6.09
358 2002 1.447489 CTCCACTGCGCTTCTCTGG 60.447 63.158 9.73 6.01 0.00 3.86
359 2003 2.435586 CCACTGCGCTTCTCTGGG 60.436 66.667 9.73 0.00 0.00 4.45
360 2004 2.435586 CACTGCGCTTCTCTGGGG 60.436 66.667 9.73 0.00 0.00 4.96
361 2005 2.604686 ACTGCGCTTCTCTGGGGA 60.605 61.111 9.73 0.00 0.00 4.81
363 2007 1.003355 CTGCGCTTCTCTGGGGAAA 60.003 57.895 9.73 0.00 0.00 3.13
367 2011 2.092429 TGCGCTTCTCTGGGGAAAATAT 60.092 45.455 9.73 0.00 0.00 1.28
368 2012 2.550180 GCGCTTCTCTGGGGAAAATATC 59.450 50.000 0.00 0.00 0.00 1.63
369 2013 3.808728 CGCTTCTCTGGGGAAAATATCA 58.191 45.455 0.00 0.00 0.00 2.15
370 2014 3.812053 CGCTTCTCTGGGGAAAATATCAG 59.188 47.826 0.00 0.00 0.00 2.90
371 2015 4.140536 GCTTCTCTGGGGAAAATATCAGG 58.859 47.826 0.00 0.00 0.00 3.86
372 2016 4.385754 GCTTCTCTGGGGAAAATATCAGGT 60.386 45.833 0.00 0.00 0.00 4.00
373 2017 4.778213 TCTCTGGGGAAAATATCAGGTG 57.222 45.455 0.00 0.00 0.00 4.00
374 2018 3.117888 TCTCTGGGGAAAATATCAGGTGC 60.118 47.826 0.00 0.00 0.00 5.01
375 2019 2.852449 TCTGGGGAAAATATCAGGTGCT 59.148 45.455 0.00 0.00 0.00 4.40
376 2020 4.044308 TCTGGGGAAAATATCAGGTGCTA 58.956 43.478 0.00 0.00 0.00 3.49
377 2021 4.137543 CTGGGGAAAATATCAGGTGCTAC 58.862 47.826 0.00 0.00 0.00 3.58
378 2022 3.139077 GGGGAAAATATCAGGTGCTACG 58.861 50.000 0.00 0.00 0.00 3.51
379 2023 3.139077 GGGAAAATATCAGGTGCTACGG 58.861 50.000 0.00 0.00 0.00 4.02
380 2024 3.139077 GGAAAATATCAGGTGCTACGGG 58.861 50.000 0.00 0.00 0.00 5.28
381 2025 2.256117 AAATATCAGGTGCTACGGGC 57.744 50.000 0.00 0.00 42.22 6.13
382 2026 1.424638 AATATCAGGTGCTACGGGCT 58.575 50.000 4.43 0.00 42.39 5.19
383 2027 0.969894 ATATCAGGTGCTACGGGCTC 59.030 55.000 4.43 0.95 42.39 4.70
406 2050 2.586792 GCTCCTCAGCCGTTGGAT 59.413 61.111 0.00 0.00 40.14 3.41
407 2051 1.522580 GCTCCTCAGCCGTTGGATC 60.523 63.158 0.00 0.00 40.14 3.36
408 2052 1.965754 GCTCCTCAGCCGTTGGATCT 61.966 60.000 0.00 0.00 40.14 2.75
409 2053 1.403814 CTCCTCAGCCGTTGGATCTA 58.596 55.000 0.00 0.00 0.00 1.98
410 2054 1.967066 CTCCTCAGCCGTTGGATCTAT 59.033 52.381 0.00 0.00 0.00 1.98
411 2055 3.157881 CTCCTCAGCCGTTGGATCTATA 58.842 50.000 0.00 0.00 0.00 1.31
412 2056 3.572642 TCCTCAGCCGTTGGATCTATAA 58.427 45.455 0.00 0.00 0.00 0.98
413 2057 4.160329 TCCTCAGCCGTTGGATCTATAAT 58.840 43.478 0.00 0.00 0.00 1.28
414 2058 4.220821 TCCTCAGCCGTTGGATCTATAATC 59.779 45.833 0.00 0.00 0.00 1.75
415 2059 4.221703 CCTCAGCCGTTGGATCTATAATCT 59.778 45.833 0.00 0.00 0.00 2.40
416 2060 5.419155 CCTCAGCCGTTGGATCTATAATCTA 59.581 44.000 0.00 0.00 0.00 1.98
417 2061 6.071334 CCTCAGCCGTTGGATCTATAATCTAA 60.071 42.308 0.00 0.00 0.00 2.10
418 2062 6.688578 TCAGCCGTTGGATCTATAATCTAAC 58.311 40.000 4.69 4.69 36.54 2.34
424 2068 6.675987 GTTGGATCTATAATCTAACGGTCGT 58.324 40.000 0.00 0.00 31.64 4.34
425 2069 6.492007 TGGATCTATAATCTAACGGTCGTC 57.508 41.667 0.00 0.00 0.00 4.20
426 2070 6.236409 TGGATCTATAATCTAACGGTCGTCT 58.764 40.000 0.00 0.00 0.00 4.18
427 2071 7.389232 TGGATCTATAATCTAACGGTCGTCTA 58.611 38.462 0.00 0.00 0.00 2.59
428 2072 7.548427 TGGATCTATAATCTAACGGTCGTCTAG 59.452 40.741 0.00 2.21 0.00 2.43
429 2073 7.011295 GGATCTATAATCTAACGGTCGTCTAGG 59.989 44.444 0.00 0.00 0.00 3.02
430 2074 6.169094 TCTATAATCTAACGGTCGTCTAGGG 58.831 44.000 0.00 0.00 0.00 3.53
431 2075 3.287867 AATCTAACGGTCGTCTAGGGA 57.712 47.619 0.00 0.00 0.00 4.20
432 2076 3.505480 ATCTAACGGTCGTCTAGGGAT 57.495 47.619 0.00 0.00 0.00 3.85
433 2077 2.569059 TCTAACGGTCGTCTAGGGATG 58.431 52.381 0.00 0.00 0.00 3.51
434 2078 1.001597 CTAACGGTCGTCTAGGGATGC 60.002 57.143 0.00 0.00 0.00 3.91
435 2079 2.001361 AACGGTCGTCTAGGGATGCG 62.001 60.000 0.00 0.00 0.00 4.73
436 2080 2.027751 GGTCGTCTAGGGATGCGC 59.972 66.667 0.00 0.00 0.00 6.09
437 2081 2.491022 GGTCGTCTAGGGATGCGCT 61.491 63.158 9.73 0.00 0.00 5.92
438 2082 1.170919 GGTCGTCTAGGGATGCGCTA 61.171 60.000 9.73 0.00 0.00 4.26
439 2083 0.238817 GTCGTCTAGGGATGCGCTAG 59.761 60.000 9.73 11.08 44.79 3.42
443 2087 2.889170 TCTAGGGATGCGCTAGATCT 57.111 50.000 9.73 0.00 46.22 2.75
444 2088 2.441410 TCTAGGGATGCGCTAGATCTG 58.559 52.381 9.73 0.00 46.22 2.90
445 2089 1.476085 CTAGGGATGCGCTAGATCTGG 59.524 57.143 9.73 2.94 45.80 3.86
446 2090 0.470833 AGGGATGCGCTAGATCTGGT 60.471 55.000 9.73 0.00 0.00 4.00
447 2091 0.394565 GGGATGCGCTAGATCTGGTT 59.605 55.000 9.73 0.00 0.00 3.67
448 2092 1.506493 GGATGCGCTAGATCTGGTTG 58.494 55.000 9.73 0.65 0.00 3.77
449 2093 1.202580 GGATGCGCTAGATCTGGTTGT 60.203 52.381 9.73 0.00 0.00 3.32
450 2094 2.035961 GGATGCGCTAGATCTGGTTGTA 59.964 50.000 9.73 0.00 0.00 2.41
451 2095 3.492656 GGATGCGCTAGATCTGGTTGTAA 60.493 47.826 9.73 0.00 0.00 2.41
452 2096 3.819564 TGCGCTAGATCTGGTTGTAAT 57.180 42.857 9.73 0.00 0.00 1.89
453 2097 4.929819 TGCGCTAGATCTGGTTGTAATA 57.070 40.909 9.73 0.00 0.00 0.98
454 2098 5.270893 TGCGCTAGATCTGGTTGTAATAA 57.729 39.130 9.73 0.00 0.00 1.40
455 2099 5.047847 TGCGCTAGATCTGGTTGTAATAAC 58.952 41.667 9.73 0.00 0.00 1.89
456 2100 4.148348 GCGCTAGATCTGGTTGTAATAACG 59.852 45.833 5.18 0.00 0.00 3.18
457 2101 4.680110 CGCTAGATCTGGTTGTAATAACGG 59.320 45.833 5.18 0.00 0.00 4.44
458 2102 5.506815 CGCTAGATCTGGTTGTAATAACGGA 60.507 44.000 5.18 0.00 0.00 4.69
459 2103 5.690857 GCTAGATCTGGTTGTAATAACGGAC 59.309 44.000 5.18 0.00 0.00 4.79
460 2104 5.934402 AGATCTGGTTGTAATAACGGACT 57.066 39.130 0.00 0.00 0.00 3.85
461 2105 6.295719 AGATCTGGTTGTAATAACGGACTT 57.704 37.500 0.00 0.00 0.00 3.01
462 2106 6.338937 AGATCTGGTTGTAATAACGGACTTC 58.661 40.000 0.00 0.00 0.00 3.01
463 2107 5.733620 TCTGGTTGTAATAACGGACTTCT 57.266 39.130 0.00 0.00 0.00 2.85
464 2108 6.839124 TCTGGTTGTAATAACGGACTTCTA 57.161 37.500 0.00 0.00 0.00 2.10
465 2109 6.860080 TCTGGTTGTAATAACGGACTTCTAG 58.140 40.000 0.00 0.00 0.00 2.43
466 2110 5.969423 TGGTTGTAATAACGGACTTCTAGG 58.031 41.667 0.00 0.00 0.00 3.02
467 2111 5.105228 TGGTTGTAATAACGGACTTCTAGGG 60.105 44.000 0.00 0.00 0.00 3.53
468 2112 5.354767 GTTGTAATAACGGACTTCTAGGGG 58.645 45.833 0.00 0.00 0.00 4.79
469 2113 4.613437 TGTAATAACGGACTTCTAGGGGT 58.387 43.478 0.00 0.00 0.00 4.95
470 2114 4.403432 TGTAATAACGGACTTCTAGGGGTG 59.597 45.833 0.00 0.00 0.00 4.61
471 2115 2.610438 TAACGGACTTCTAGGGGTGT 57.390 50.000 0.00 0.00 0.00 4.16
472 2116 1.725803 AACGGACTTCTAGGGGTGTT 58.274 50.000 0.00 0.00 0.00 3.32
473 2117 1.725803 ACGGACTTCTAGGGGTGTTT 58.274 50.000 0.00 0.00 0.00 2.83
474 2118 2.052468 ACGGACTTCTAGGGGTGTTTT 58.948 47.619 0.00 0.00 0.00 2.43
475 2119 2.440627 ACGGACTTCTAGGGGTGTTTTT 59.559 45.455 0.00 0.00 0.00 1.94
498 2142 6.985188 TTTAAATAAATGTGCGAGCTCTCT 57.015 33.333 12.85 0.00 0.00 3.10
499 2143 6.589830 TTAAATAAATGTGCGAGCTCTCTC 57.410 37.500 12.85 5.42 35.99 3.20
500 2144 2.586258 TAAATGTGCGAGCTCTCTCC 57.414 50.000 12.85 0.00 35.94 3.71
501 2145 0.901124 AAATGTGCGAGCTCTCTCCT 59.099 50.000 12.85 0.00 35.94 3.69
502 2146 0.901124 AATGTGCGAGCTCTCTCCTT 59.099 50.000 12.85 1.32 35.94 3.36
503 2147 0.175302 ATGTGCGAGCTCTCTCCTTG 59.825 55.000 12.85 0.00 35.94 3.61
504 2148 1.153667 GTGCGAGCTCTCTCCTTGG 60.154 63.158 12.85 0.00 35.94 3.61
505 2149 2.202864 GCGAGCTCTCTCCTTGGC 60.203 66.667 12.85 0.82 35.94 4.52
506 2150 2.498726 CGAGCTCTCTCCTTGGCC 59.501 66.667 12.85 0.00 35.94 5.36
507 2151 2.057408 CGAGCTCTCTCCTTGGCCT 61.057 63.158 12.85 0.00 35.94 5.19
508 2152 1.612395 CGAGCTCTCTCCTTGGCCTT 61.612 60.000 12.85 0.00 35.94 4.35
509 2153 0.617935 GAGCTCTCTCCTTGGCCTTT 59.382 55.000 6.43 0.00 33.19 3.11
510 2154 0.327591 AGCTCTCTCCTTGGCCTTTG 59.672 55.000 3.32 0.00 0.00 2.77
511 2155 0.679321 GCTCTCTCCTTGGCCTTTGG 60.679 60.000 3.32 3.34 0.00 3.28
512 2156 0.987294 CTCTCTCCTTGGCCTTTGGA 59.013 55.000 3.32 8.04 0.00 3.53
513 2157 1.563410 CTCTCTCCTTGGCCTTTGGAT 59.437 52.381 3.32 0.00 0.00 3.41
514 2158 1.995542 TCTCTCCTTGGCCTTTGGATT 59.004 47.619 3.32 0.00 0.00 3.01
515 2159 2.379907 TCTCTCCTTGGCCTTTGGATTT 59.620 45.455 3.32 0.00 0.00 2.17
516 2160 3.168292 CTCTCCTTGGCCTTTGGATTTT 58.832 45.455 3.32 0.00 0.00 1.82
517 2161 4.044065 TCTCTCCTTGGCCTTTGGATTTTA 59.956 41.667 3.32 0.00 0.00 1.52
518 2162 4.344104 TCTCCTTGGCCTTTGGATTTTAG 58.656 43.478 3.32 0.00 0.00 1.85
519 2163 4.044065 TCTCCTTGGCCTTTGGATTTTAGA 59.956 41.667 3.32 0.00 0.00 2.10
520 2164 4.946646 TCCTTGGCCTTTGGATTTTAGAT 58.053 39.130 3.32 0.00 0.00 1.98
521 2165 4.956075 TCCTTGGCCTTTGGATTTTAGATC 59.044 41.667 3.32 0.00 0.00 2.75
522 2166 4.100035 CCTTGGCCTTTGGATTTTAGATCC 59.900 45.833 3.32 0.00 38.66 3.36
523 2167 4.329638 TGGCCTTTGGATTTTAGATCCA 57.670 40.909 3.32 0.00 45.71 3.41
529 2173 3.644966 TGGATTTTAGATCCAACGGCT 57.355 42.857 1.66 0.00 44.54 5.52
530 2174 3.278574 TGGATTTTAGATCCAACGGCTG 58.721 45.455 1.66 0.00 44.54 4.85
531 2175 3.054728 TGGATTTTAGATCCAACGGCTGA 60.055 43.478 1.66 0.00 44.54 4.26
532 2176 3.561725 GGATTTTAGATCCAACGGCTGAG 59.438 47.826 0.00 0.00 38.09 3.35
533 2177 3.973206 TTTTAGATCCAACGGCTGAGA 57.027 42.857 0.00 0.00 0.00 3.27
534 2178 3.973206 TTTAGATCCAACGGCTGAGAA 57.027 42.857 0.00 0.00 0.00 2.87
535 2179 3.526931 TTAGATCCAACGGCTGAGAAG 57.473 47.619 0.00 0.00 0.00 2.85
536 2180 0.107945 AGATCCAACGGCTGAGAAGC 60.108 55.000 0.00 0.00 0.00 3.86
537 2181 0.107945 GATCCAACGGCTGAGAAGCT 60.108 55.000 0.00 0.00 34.73 3.74
538 2182 0.107945 ATCCAACGGCTGAGAAGCTC 60.108 55.000 0.00 0.00 34.73 4.09
539 2183 1.743252 CCAACGGCTGAGAAGCTCC 60.743 63.158 0.00 0.00 34.73 4.70
540 2184 1.743252 CAACGGCTGAGAAGCTCCC 60.743 63.158 0.00 0.00 34.73 4.30
541 2185 3.302347 AACGGCTGAGAAGCTCCCG 62.302 63.158 0.00 9.55 39.80 5.14
542 2186 4.521062 CGGCTGAGAAGCTCCCGG 62.521 72.222 0.00 0.00 33.72 5.73
543 2187 3.077556 GGCTGAGAAGCTCCCGGA 61.078 66.667 0.73 0.00 34.73 5.14
544 2188 2.498726 GCTGAGAAGCTCCCGGAG 59.501 66.667 10.41 10.41 0.00 4.63
553 2197 4.277552 CTCCCGGAGCACCAGATA 57.722 61.111 0.73 0.00 35.59 1.98
554 2198 2.751991 CTCCCGGAGCACCAGATAT 58.248 57.895 0.73 0.00 35.59 1.63
555 2199 0.605589 CTCCCGGAGCACCAGATATC 59.394 60.000 0.73 0.00 35.59 1.63
556 2200 0.188587 TCCCGGAGCACCAGATATCT 59.811 55.000 0.73 0.00 35.59 1.98
557 2201 1.051812 CCCGGAGCACCAGATATCTT 58.948 55.000 0.73 0.00 35.59 2.40
558 2202 1.001406 CCCGGAGCACCAGATATCTTC 59.999 57.143 0.73 0.00 35.59 2.87
559 2203 1.001406 CCGGAGCACCAGATATCTTCC 59.999 57.143 1.33 6.42 35.59 3.46
560 2204 1.001406 CGGAGCACCAGATATCTTCCC 59.999 57.143 12.75 4.17 35.59 3.97
575 2219 5.983333 ATCTTCCCATATGACAAGAGGTT 57.017 39.130 16.72 3.75 0.00 3.50
576 2220 5.779241 TCTTCCCATATGACAAGAGGTTT 57.221 39.130 3.65 0.00 0.00 3.27
577 2221 5.745227 TCTTCCCATATGACAAGAGGTTTC 58.255 41.667 3.65 0.00 0.00 2.78
578 2222 5.488919 TCTTCCCATATGACAAGAGGTTTCT 59.511 40.000 3.65 0.00 34.29 2.52
579 2223 5.359194 TCCCATATGACAAGAGGTTTCTC 57.641 43.478 3.65 0.00 40.25 2.87
607 2251 6.481313 GCTCAATAATGTGTGAGAGAAGCATA 59.519 38.462 4.89 0.00 43.32 3.14
608 2252 7.172875 GCTCAATAATGTGTGAGAGAAGCATAT 59.827 37.037 4.89 0.00 43.32 1.78
740 2453 2.270205 CAGTCAATGCGGGCTCCT 59.730 61.111 0.00 0.00 0.00 3.69
750 2463 2.195139 GGGCTCCTCATGCTGCAT 59.805 61.111 9.81 9.81 0.00 3.96
752 2465 1.041447 GGGCTCCTCATGCTGCATTT 61.041 55.000 13.38 0.00 0.00 2.32
755 2472 1.030457 CTCCTCATGCTGCATTTCCC 58.970 55.000 13.38 0.00 0.00 3.97
760 2477 1.820519 TCATGCTGCATTTCCCTGTTC 59.179 47.619 13.38 0.00 0.00 3.18
813 2530 2.126463 GAGTGACGCTGCGCACTA 60.126 61.111 34.31 15.30 41.36 2.74
814 2531 2.430921 AGTGACGCTGCGCACTAC 60.431 61.111 33.78 22.77 40.30 2.73
901 2627 4.287552 GAACCCCATTAGTCAGTCCTCTA 58.712 47.826 0.00 0.00 0.00 2.43
949 2682 1.734465 CCAAGCACAAACCGAGAGATC 59.266 52.381 0.00 0.00 0.00 2.75
989 2722 8.800370 ATAGAGAGATCCCTTCAAAAGAAAAC 57.200 34.615 0.00 0.00 0.00 2.43
999 2742 6.925718 CCCTTCAAAAGAAAACAAAGAGATCC 59.074 38.462 0.00 0.00 0.00 3.36
1008 2751 5.779241 AAACAAAGAGATCCATGGAGGTA 57.221 39.130 21.33 0.00 39.02 3.08
1068 2811 2.856032 CTCACTGGTTTGCTCGCG 59.144 61.111 0.00 0.00 0.00 5.87
1262 3005 0.798776 GACAAGTTCATCCACCAGCG 59.201 55.000 0.00 0.00 0.00 5.18
1324 3067 2.492449 CTTCCGGAAGACTGCTCGCA 62.492 60.000 36.18 0.51 40.79 5.10
1326 3069 2.568612 CGGAAGACTGCTCGCAGA 59.431 61.111 24.30 0.00 46.30 4.26
1367 3110 0.373716 CGTGGAATCGCTAGCCAAAC 59.626 55.000 9.66 0.00 32.68 2.93
1384 3127 4.321230 GCCAAACCAACGATCTGAAGATTT 60.321 41.667 0.00 0.00 34.37 2.17
1751 3495 6.309737 CAGATGCCTTGCAAGAAAGATTTTAC 59.690 38.462 28.05 7.43 43.62 2.01
1766 3510 8.480643 AAAGATTTTACAGAAGGTATCGACAG 57.519 34.615 0.00 0.00 0.00 3.51
1829 3573 7.613551 TCTTACAAGATAAGAGGTAATCCCC 57.386 40.000 0.00 0.00 0.00 4.81
2153 4106 8.589701 TGACTGTAGGTAGTGAAATAGAATCA 57.410 34.615 0.00 0.00 0.00 2.57
2156 4109 9.877178 ACTGTAGGTAGTGAAATAGAATCAAAG 57.123 33.333 0.00 0.00 0.00 2.77
2196 4153 9.750125 TGCATAGAGTTTATTAGTGATGTACTG 57.250 33.333 0.00 0.00 40.65 2.74
2218 4176 7.386851 ACTGAAAGGACTCAAATATTTCTCGA 58.613 34.615 0.00 0.00 39.30 4.04
2241 4199 7.439056 TCGAGAACCTTTAAAACACGAATAACT 59.561 33.333 0.00 0.00 0.00 2.24
2261 4219 6.952773 AACTTACATGTAGGCTGTTGAAAA 57.047 33.333 14.45 0.00 0.00 2.29
2318 4281 4.941263 ACGCACCACACACATTAGATATTT 59.059 37.500 0.00 0.00 0.00 1.40
2345 4308 7.360575 ACAAGTGTTATGGACGAAAATAGTC 57.639 36.000 0.00 0.00 37.86 2.59
2392 4425 7.408910 CGTGTATGATCATGAAGCAAACATTA 58.591 34.615 18.72 0.00 0.00 1.90
2433 5343 6.566141 TGGAAGTTAAGTTGGTTAGTTTTGC 58.434 36.000 0.00 0.00 0.00 3.68
2447 5357 4.864916 AGTTTTGCGCTACATCTATGTG 57.135 40.909 9.73 0.00 41.89 3.21
2460 5376 6.605471 ACATCTATGTGTGAAGTCTTGGTA 57.395 37.500 0.00 0.00 40.03 3.25
2521 5462 9.804758 AAGCACATAGTAGAACTTACATAACTC 57.195 33.333 0.00 0.00 0.00 3.01
2534 5475 7.655490 ACTTACATAACTCGTTCAGTACTTGT 58.345 34.615 0.00 0.00 32.30 3.16
2638 5601 4.855715 TTTTGCGGTATGGTTGAATTCA 57.144 36.364 3.38 3.38 0.00 2.57
2647 5610 7.962918 GCGGTATGGTTGAATTCATTATACATC 59.037 37.037 23.86 16.53 0.00 3.06
2727 5697 8.651589 TGCACTTATATCTATTAGGCACTAGT 57.348 34.615 0.00 0.00 44.25 2.57
2728 5698 9.749340 TGCACTTATATCTATTAGGCACTAGTA 57.251 33.333 0.00 0.00 44.25 1.82
2737 5707 5.632034 ATTAGGCACTAGTAGAAAAGGGG 57.368 43.478 3.59 0.00 44.25 4.79
2738 5708 2.197465 AGGCACTAGTAGAAAAGGGGG 58.803 52.381 3.59 0.00 36.02 5.40
2739 5709 1.408405 GGCACTAGTAGAAAAGGGGGC 60.408 57.143 3.59 0.00 0.00 5.80
2740 5710 1.560146 GCACTAGTAGAAAAGGGGGCT 59.440 52.381 3.59 0.00 0.00 5.19
2741 5711 2.026169 GCACTAGTAGAAAAGGGGGCTT 60.026 50.000 3.59 0.00 0.00 4.35
2742 5712 3.561528 GCACTAGTAGAAAAGGGGGCTTT 60.562 47.826 3.59 0.00 0.00 3.51
2743 5713 4.663334 CACTAGTAGAAAAGGGGGCTTTT 58.337 43.478 3.59 0.00 39.00 2.27
2744 5714 4.459337 CACTAGTAGAAAAGGGGGCTTTTG 59.541 45.833 3.59 0.00 36.75 2.44
2745 5715 3.612795 AGTAGAAAAGGGGGCTTTTGT 57.387 42.857 0.00 0.00 36.75 2.83
2746 5716 3.497332 AGTAGAAAAGGGGGCTTTTGTC 58.503 45.455 0.00 0.00 36.75 3.18
2747 5717 1.717032 AGAAAAGGGGGCTTTTGTCC 58.283 50.000 0.00 0.00 45.31 4.02
2753 5723 3.047735 GGGCTTTTGTCCCGGTTG 58.952 61.111 0.00 0.00 38.54 3.77
2754 5724 2.570284 GGGCTTTTGTCCCGGTTGG 61.570 63.158 0.00 0.00 38.54 3.77
2755 5725 1.830847 GGCTTTTGTCCCGGTTGGT 60.831 57.895 0.00 0.00 34.77 3.67
2756 5726 0.537828 GGCTTTTGTCCCGGTTGGTA 60.538 55.000 0.00 0.00 34.77 3.25
2757 5727 1.320507 GCTTTTGTCCCGGTTGGTAA 58.679 50.000 0.00 0.00 34.77 2.85
2758 5728 1.268625 GCTTTTGTCCCGGTTGGTAAG 59.731 52.381 0.00 0.00 34.77 2.34
2759 5729 1.883926 CTTTTGTCCCGGTTGGTAAGG 59.116 52.381 0.00 0.00 34.77 2.69
2760 5730 0.110869 TTTGTCCCGGTTGGTAAGGG 59.889 55.000 0.00 0.00 46.40 3.95
2761 5731 2.045634 GTCCCGGTTGGTAAGGGC 60.046 66.667 0.00 0.00 44.70 5.19
2762 5732 2.204029 TCCCGGTTGGTAAGGGCT 60.204 61.111 0.00 0.00 44.70 5.19
2763 5733 1.848895 TCCCGGTTGGTAAGGGCTT 60.849 57.895 0.00 0.00 44.70 4.35
2764 5734 1.076014 CCCGGTTGGTAAGGGCTTT 59.924 57.895 0.00 0.00 38.51 3.51
2765 5735 0.541063 CCCGGTTGGTAAGGGCTTTT 60.541 55.000 0.00 0.00 38.51 2.27
2766 5736 1.272037 CCCGGTTGGTAAGGGCTTTTA 60.272 52.381 0.00 0.00 38.51 1.52
2767 5737 2.089201 CCGGTTGGTAAGGGCTTTTAG 58.911 52.381 0.00 0.00 0.00 1.85
2768 5738 2.553685 CCGGTTGGTAAGGGCTTTTAGT 60.554 50.000 0.00 0.00 0.00 2.24
2769 5739 2.745821 CGGTTGGTAAGGGCTTTTAGTC 59.254 50.000 0.00 0.00 0.00 2.59
2770 5740 3.087031 GGTTGGTAAGGGCTTTTAGTCC 58.913 50.000 0.00 0.00 41.32 3.85
2771 5741 3.087031 GTTGGTAAGGGCTTTTAGTCCC 58.913 50.000 0.00 0.00 42.20 4.46
2772 5742 1.279846 TGGTAAGGGCTTTTAGTCCCG 59.720 52.381 0.00 0.00 42.20 5.14
2773 5743 1.407851 GGTAAGGGCTTTTAGTCCCGG 60.408 57.143 0.00 0.00 42.20 5.73
2774 5744 1.280133 GTAAGGGCTTTTAGTCCCGGT 59.720 52.381 0.00 0.00 42.20 5.28
2775 5745 0.775542 AAGGGCTTTTAGTCCCGGTT 59.224 50.000 0.00 0.00 42.20 4.44
2776 5746 0.775542 AGGGCTTTTAGTCCCGGTTT 59.224 50.000 0.00 0.00 42.20 3.27
2777 5747 1.146359 AGGGCTTTTAGTCCCGGTTTT 59.854 47.619 0.00 0.00 42.20 2.43
2778 5748 1.965643 GGGCTTTTAGTCCCGGTTTTT 59.034 47.619 0.00 0.00 32.63 1.94
2779 5749 2.288579 GGGCTTTTAGTCCCGGTTTTTG 60.289 50.000 0.00 0.00 32.63 2.44
2780 5750 2.624364 GGCTTTTAGTCCCGGTTTTTGA 59.376 45.455 0.00 0.00 0.00 2.69
2781 5751 3.068448 GGCTTTTAGTCCCGGTTTTTGAA 59.932 43.478 0.00 0.00 0.00 2.69
2782 5752 4.046462 GCTTTTAGTCCCGGTTTTTGAAC 58.954 43.478 0.00 0.00 0.00 3.18
2783 5753 4.613944 CTTTTAGTCCCGGTTTTTGAACC 58.386 43.478 0.00 0.00 39.44 3.62
2793 5763 4.233123 GGTTTTTGAACCGGGACTAAAG 57.767 45.455 6.32 0.00 32.47 1.85
2794 5764 3.005050 GGTTTTTGAACCGGGACTAAAGG 59.995 47.826 6.32 0.00 32.47 3.11
2795 5765 2.572209 TTTGAACCGGGACTAAAGGG 57.428 50.000 6.32 0.00 0.00 3.95
2796 5766 1.437397 TTGAACCGGGACTAAAGGGT 58.563 50.000 6.32 0.00 0.00 4.34
2797 5767 0.978907 TGAACCGGGACTAAAGGGTC 59.021 55.000 6.32 0.00 41.92 4.46
2798 5768 0.108472 GAACCGGGACTAAAGGGTCG 60.108 60.000 6.32 0.00 37.12 4.79
2799 5769 0.833409 AACCGGGACTAAAGGGTCGT 60.833 55.000 6.32 0.00 37.12 4.34
2800 5770 0.833409 ACCGGGACTAAAGGGTCGTT 60.833 55.000 6.32 0.00 37.12 3.85
2801 5771 1.185315 CCGGGACTAAAGGGTCGTTA 58.815 55.000 0.00 0.00 37.12 3.18
2802 5772 1.134995 CCGGGACTAAAGGGTCGTTAC 60.135 57.143 0.00 0.00 37.12 2.50
2803 5773 1.821136 CGGGACTAAAGGGTCGTTACT 59.179 52.381 0.00 0.00 37.12 2.24
2804 5774 3.016736 CGGGACTAAAGGGTCGTTACTA 58.983 50.000 0.00 0.00 37.12 1.82
2805 5775 3.443681 CGGGACTAAAGGGTCGTTACTAA 59.556 47.826 0.00 0.00 37.12 2.24
2806 5776 4.098501 CGGGACTAAAGGGTCGTTACTAAT 59.901 45.833 0.00 0.00 37.12 1.73
2807 5777 5.354767 GGGACTAAAGGGTCGTTACTAATG 58.645 45.833 0.00 0.00 37.12 1.90
2808 5778 4.807834 GGACTAAAGGGTCGTTACTAATGC 59.192 45.833 0.00 0.00 37.12 3.56
2809 5779 4.763073 ACTAAAGGGTCGTTACTAATGCC 58.237 43.478 0.00 0.00 0.00 4.40
2810 5780 3.994931 AAAGGGTCGTTACTAATGCCT 57.005 42.857 0.00 0.00 0.00 4.75
2811 5781 3.538634 AAGGGTCGTTACTAATGCCTC 57.461 47.619 0.00 0.00 0.00 4.70
2812 5782 1.761198 AGGGTCGTTACTAATGCCTCC 59.239 52.381 0.00 0.00 0.00 4.30
2813 5783 1.202615 GGGTCGTTACTAATGCCTCCC 60.203 57.143 0.00 0.00 0.00 4.30
2814 5784 1.202615 GGTCGTTACTAATGCCTCCCC 60.203 57.143 0.00 0.00 0.00 4.81
2815 5785 1.125633 TCGTTACTAATGCCTCCCCC 58.874 55.000 0.00 0.00 0.00 5.40
2829 5799 3.830698 CCCCCTTTAGTCCCGGTT 58.169 61.111 0.00 0.00 0.00 4.44
2830 5800 1.605992 CCCCCTTTAGTCCCGGTTC 59.394 63.158 0.00 0.00 0.00 3.62
2831 5801 0.912968 CCCCCTTTAGTCCCGGTTCT 60.913 60.000 0.00 0.15 0.00 3.01
2832 5802 0.989602 CCCCTTTAGTCCCGGTTCTT 59.010 55.000 0.00 0.00 0.00 2.52
2833 5803 2.190538 CCCCTTTAGTCCCGGTTCTTA 58.809 52.381 0.00 0.00 0.00 2.10
2834 5804 2.093288 CCCCTTTAGTCCCGGTTCTTAC 60.093 54.545 0.00 0.00 0.00 2.34
2835 5805 2.568509 CCCTTTAGTCCCGGTTCTTACA 59.431 50.000 0.00 0.00 0.00 2.41
2836 5806 3.593096 CCTTTAGTCCCGGTTCTTACAC 58.407 50.000 0.00 0.00 0.00 2.90
2837 5807 3.248266 CTTTAGTCCCGGTTCTTACACG 58.752 50.000 0.00 0.00 0.00 4.49
2838 5808 2.198827 TAGTCCCGGTTCTTACACGA 57.801 50.000 0.00 0.00 0.00 4.35
2839 5809 1.331214 AGTCCCGGTTCTTACACGAA 58.669 50.000 0.00 0.00 0.00 3.85
2840 5810 1.000171 AGTCCCGGTTCTTACACGAAC 60.000 52.381 0.00 0.00 41.91 3.95
2845 5815 3.892200 GTTCTTACACGAACCGGGA 57.108 52.632 6.32 0.00 37.82 5.14
2846 5816 1.422388 GTTCTTACACGAACCGGGAC 58.578 55.000 6.32 0.00 37.82 4.46
2847 5817 1.000171 GTTCTTACACGAACCGGGACT 60.000 52.381 6.32 0.00 37.82 3.85
2848 5818 2.198827 TCTTACACGAACCGGGACTA 57.801 50.000 6.32 0.00 32.98 2.59
2849 5819 2.513753 TCTTACACGAACCGGGACTAA 58.486 47.619 6.32 0.00 32.98 2.24
2850 5820 2.890311 TCTTACACGAACCGGGACTAAA 59.110 45.455 6.32 0.00 32.98 1.85
2851 5821 3.057315 TCTTACACGAACCGGGACTAAAG 60.057 47.826 6.32 0.54 32.98 1.85
2852 5822 0.319405 ACACGAACCGGGACTAAAGG 59.681 55.000 6.32 0.00 32.98 3.11
2853 5823 0.319405 CACGAACCGGGACTAAAGGT 59.681 55.000 6.32 0.00 40.50 3.50
2854 5824 0.605083 ACGAACCGGGACTAAAGGTC 59.395 55.000 6.32 0.00 43.79 3.85
2855 5825 0.457337 CGAACCGGGACTAAAGGTCG 60.457 60.000 6.32 0.00 45.35 4.79
2856 5826 0.605083 GAACCGGGACTAAAGGTCGT 59.395 55.000 6.32 0.00 45.35 4.34
2857 5827 0.605083 AACCGGGACTAAAGGTCGTC 59.395 55.000 6.32 0.00 45.35 4.20
2861 5831 3.413522 GGACTAAAGGTCGTCCACG 57.586 57.895 0.51 0.00 46.98 4.94
2862 5832 0.600057 GGACTAAAGGTCGTCCACGT 59.400 55.000 0.51 0.00 46.98 4.49
2863 5833 1.668047 GGACTAAAGGTCGTCCACGTG 60.668 57.143 9.08 9.08 46.98 4.49
2864 5834 0.316204 ACTAAAGGTCGTCCACGTGG 59.684 55.000 29.26 29.26 40.80 4.94
2865 5835 0.599558 CTAAAGGTCGTCCACGTGGA 59.400 55.000 33.23 33.23 43.08 4.02
2888 5858 3.882131 GCCTGGAGCTTCATACCAA 57.118 52.632 0.00 0.00 38.99 3.67
2889 5859 1.383523 GCCTGGAGCTTCATACCAAC 58.616 55.000 0.00 0.00 38.99 3.77
2890 5860 2.019156 GCCTGGAGCTTCATACCAACC 61.019 57.143 0.00 0.00 38.99 3.77
2891 5861 1.656652 CTGGAGCTTCATACCAACCG 58.343 55.000 0.00 0.00 33.14 4.44
2892 5862 0.251916 TGGAGCTTCATACCAACCGG 59.748 55.000 0.00 0.00 38.77 5.28
2893 5863 0.463833 GGAGCTTCATACCAACCGGG 60.464 60.000 6.32 0.00 44.81 5.73
2894 5864 0.539986 GAGCTTCATACCAACCGGGA 59.460 55.000 6.32 0.00 41.15 5.14
2895 5865 0.252197 AGCTTCATACCAACCGGGAC 59.748 55.000 6.32 0.00 41.15 4.46
2896 5866 0.252197 GCTTCATACCAACCGGGACT 59.748 55.000 6.32 0.00 41.15 3.85
2897 5867 1.483415 GCTTCATACCAACCGGGACTA 59.517 52.381 6.32 0.00 41.15 2.59
2898 5868 2.093341 GCTTCATACCAACCGGGACTAA 60.093 50.000 6.32 0.00 41.15 2.24
2899 5869 3.620472 GCTTCATACCAACCGGGACTAAA 60.620 47.826 6.32 0.00 41.15 1.85
2900 5870 3.899052 TCATACCAACCGGGACTAAAG 57.101 47.619 6.32 0.00 41.15 1.85
2901 5871 3.443052 TCATACCAACCGGGACTAAAGA 58.557 45.455 6.32 0.00 41.15 2.52
2902 5872 3.839490 TCATACCAACCGGGACTAAAGAA 59.161 43.478 6.32 0.00 41.15 2.52
2903 5873 4.286549 TCATACCAACCGGGACTAAAGAAA 59.713 41.667 6.32 0.00 41.15 2.52
2904 5874 3.581265 ACCAACCGGGACTAAAGAAAA 57.419 42.857 6.32 0.00 41.15 2.29
2905 5875 4.108501 ACCAACCGGGACTAAAGAAAAT 57.891 40.909 6.32 0.00 41.15 1.82
2906 5876 4.476297 ACCAACCGGGACTAAAGAAAATT 58.524 39.130 6.32 0.00 41.15 1.82
2907 5877 4.897076 ACCAACCGGGACTAAAGAAAATTT 59.103 37.500 6.32 0.00 41.15 1.82
2908 5878 5.364446 ACCAACCGGGACTAAAGAAAATTTT 59.636 36.000 6.32 2.28 41.15 1.82
2909 5879 6.550481 ACCAACCGGGACTAAAGAAAATTTTA 59.450 34.615 6.32 0.00 41.15 1.52
2910 5880 7.233962 ACCAACCGGGACTAAAGAAAATTTTAT 59.766 33.333 6.32 0.00 41.15 1.40
2911 5881 7.544217 CCAACCGGGACTAAAGAAAATTTTATG 59.456 37.037 6.32 0.00 40.01 1.90
2912 5882 8.301002 CAACCGGGACTAAAGAAAATTTTATGA 58.699 33.333 6.32 0.00 0.00 2.15
2913 5883 8.589701 ACCGGGACTAAAGAAAATTTTATGAT 57.410 30.769 6.32 0.00 0.00 2.45
2914 5884 9.689501 ACCGGGACTAAAGAAAATTTTATGATA 57.310 29.630 6.32 0.00 0.00 2.15
3127 6098 4.110036 AGTCTGCACTTGTTGTTTTTCC 57.890 40.909 0.00 0.00 0.00 3.13
3299 6317 4.895297 ACAGTTTGACCAGATTTGACCAAT 59.105 37.500 0.00 0.00 0.00 3.16
3626 6800 4.870636 ACACCACATATCACATGGGAAAT 58.129 39.130 0.00 0.00 37.86 2.17
4042 7241 4.816264 TCCATATCGGCATGGGACACTATA 60.816 45.833 13.98 0.00 44.85 1.31
4154 7353 0.385029 TGGCCGCATGTATGAAATGC 59.615 50.000 0.00 0.00 45.62 3.56
4172 7371 1.134699 TGCAAGCCCTAAGTGATCTCG 60.135 52.381 0.00 0.00 0.00 4.04
4211 7411 7.867445 TTCTTCAAAAGAATATTTGGTTCGC 57.133 32.000 0.00 0.00 42.31 4.70
4213 7413 7.601856 TCTTCAAAAGAATATTTGGTTCGCAT 58.398 30.769 0.00 0.00 40.04 4.73
4222 7422 1.674359 TTGGTTCGCATGACTGTTGT 58.326 45.000 0.00 0.00 0.00 3.32
4382 8114 3.450457 TGGTTCTGCATTGGACAAAAACT 59.550 39.130 0.00 0.00 0.00 2.66
4402 8134 6.749923 AACTGAAGCTTAGATGGAATGAAC 57.250 37.500 0.00 0.00 0.00 3.18
4433 8636 7.675062 ACTATCCCTTAGCTACAATGATCTTG 58.325 38.462 0.00 0.00 0.00 3.02
4442 8645 4.878397 GCTACAATGATCTTGCACCTAACT 59.122 41.667 0.00 0.00 0.00 2.24
4450 8653 4.415881 TCTTGCACCTAACTTGAAGACA 57.584 40.909 0.00 0.00 0.00 3.41
4647 10045 1.845791 TGGCTATGATGGAAAGGCTCA 59.154 47.619 0.00 0.00 36.79 4.26
4689 10087 5.530171 ACATGATGCTCGAGCTCATTATTTT 59.470 36.000 31.91 18.81 42.66 1.82
4761 10159 3.399440 TTTGGCAAATTGTCATGGTCC 57.601 42.857 8.93 0.00 29.04 4.46
4774 10172 0.389391 ATGGTCCTATTCGGCGACTG 59.611 55.000 10.16 2.17 0.00 3.51
4778 10176 1.022735 TCCTATTCGGCGACTGTCTC 58.977 55.000 10.16 0.00 0.00 3.36
4815 10213 5.163163 ACCAAGAGCTTGCATCTATATTGGA 60.163 40.000 21.42 0.00 39.16 3.53
4822 10220 7.883217 AGCTTGCATCTATATTGGAAAATGAG 58.117 34.615 0.00 0.00 0.00 2.90
4848 10246 5.073428 TCTAAGCCATGTACGATCTCTGAT 58.927 41.667 0.00 0.00 0.00 2.90
4910 10308 0.383949 TGGGTTTGAAGCTTTGCGTC 59.616 50.000 0.00 0.00 37.54 5.19
5046 10444 3.327757 TCAGGAGTTGTGAGGCTTTATGT 59.672 43.478 0.00 0.00 0.00 2.29
5209 10607 7.408756 TGGGATTGGAACTATGAAGAATTTG 57.591 36.000 0.00 0.00 0.00 2.32
5333 10731 5.363939 GTGGAGGATCTCAAGAATACAAGG 58.636 45.833 0.00 0.00 33.73 3.61
5540 10938 0.839946 ACCAGCACTCACCAGTCTTT 59.160 50.000 0.00 0.00 0.00 2.52
5652 11050 4.442375 TCAACGCTGTCCAAAAAGAAAA 57.558 36.364 0.00 0.00 0.00 2.29
5714 11112 7.919621 AGGAATTCTACCTTATTCGTACTTTCG 59.080 37.037 5.23 0.00 33.55 3.46
5717 11115 6.124088 TCTACCTTATTCGTACTTTCGGTC 57.876 41.667 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.487372 ACTTCCTTACCCTGCAAACTTC 58.513 45.455 0.00 0.00 0.00 3.01
2 3 3.595190 ACTTCCTTACCCTGCAAACTT 57.405 42.857 0.00 0.00 0.00 2.66
5 6 5.056553 AGTTAACTTCCTTACCCTGCAAA 57.943 39.130 1.12 0.00 0.00 3.68
6 7 4.717279 AGTTAACTTCCTTACCCTGCAA 57.283 40.909 1.12 0.00 0.00 4.08
7 8 5.829062 TTAGTTAACTTCCTTACCCTGCA 57.171 39.130 14.49 0.00 0.00 4.41
8 9 7.789026 TCTATTAGTTAACTTCCTTACCCTGC 58.211 38.462 14.49 0.00 0.00 4.85
9 10 9.198475 TCTCTATTAGTTAACTTCCTTACCCTG 57.802 37.037 14.49 0.00 0.00 4.45
10 11 9.423964 CTCTCTATTAGTTAACTTCCTTACCCT 57.576 37.037 14.49 0.00 0.00 4.34
11 12 9.418839 TCTCTCTATTAGTTAACTTCCTTACCC 57.581 37.037 14.49 0.00 0.00 3.69
15 16 9.716556 TCCATCTCTCTATTAGTTAACTTCCTT 57.283 33.333 14.49 0.00 0.00 3.36
16 17 9.716556 TTCCATCTCTCTATTAGTTAACTTCCT 57.283 33.333 14.49 1.65 0.00 3.36
46 47 8.560374 AGCACATTTTTCTACTGTTACTTCTTC 58.440 33.333 0.00 0.00 0.00 2.87
61 63 7.359514 GCCAATTTCACTAGAAGCACATTTTTC 60.360 37.037 0.00 0.00 34.71 2.29
99 103 5.127194 ACTCGTTATGTTGAGGATAAGCTCA 59.873 40.000 0.00 0.00 36.53 4.26
151 155 2.677037 GCACATAACCGAGTGTTAGCCT 60.677 50.000 0.00 0.00 42.50 4.58
152 156 1.664151 GCACATAACCGAGTGTTAGCC 59.336 52.381 0.00 0.00 42.50 3.93
162 1796 7.389330 TGAATATTATTAGGGTGCACATAACCG 59.611 37.037 20.43 0.00 38.70 4.44
214 1848 3.965347 GGTTCTGGTGTAGCCCTATAAGA 59.035 47.826 0.00 0.00 36.04 2.10
221 1855 0.036294 GAGTGGTTCTGGTGTAGCCC 60.036 60.000 0.00 0.00 36.04 5.19
238 1872 2.354109 TGCTAGACTTCGTTGCTGAG 57.646 50.000 0.00 0.00 0.00 3.35
242 1876 2.346803 TCCAATGCTAGACTTCGTTGC 58.653 47.619 0.00 0.00 0.00 4.17
244 1878 5.361285 AGAGTATCCAATGCTAGACTTCGTT 59.639 40.000 0.00 0.00 33.66 3.85
268 1902 5.645067 AGATTTGAACGATCATTGAGCAAGA 59.355 36.000 2.47 0.00 34.96 3.02
305 1939 4.184629 CTGTCCTACTGCCAGTGATTTAC 58.815 47.826 7.83 0.00 0.00 2.01
349 1993 4.140536 CCTGATATTTTCCCCAGAGAAGC 58.859 47.826 0.00 0.00 0.00 3.86
350 1994 5.128919 CACCTGATATTTTCCCCAGAGAAG 58.871 45.833 0.00 0.00 0.00 2.85
358 2002 3.139077 CCGTAGCACCTGATATTTTCCC 58.861 50.000 0.00 0.00 0.00 3.97
359 2003 3.139077 CCCGTAGCACCTGATATTTTCC 58.861 50.000 0.00 0.00 0.00 3.13
360 2004 2.548480 GCCCGTAGCACCTGATATTTTC 59.452 50.000 0.00 0.00 42.97 2.29
361 2005 2.572290 GCCCGTAGCACCTGATATTTT 58.428 47.619 0.00 0.00 42.97 1.82
381 2025 3.535962 GCTGAGGAGCTCCGGGAG 61.536 72.222 26.95 22.40 42.52 4.30
385 2029 3.764466 AACGGCTGAGGAGCTCCG 61.764 66.667 26.95 17.04 45.44 4.63
386 2030 2.125350 CAACGGCTGAGGAGCTCC 60.125 66.667 26.22 26.22 45.44 4.70
387 2031 1.965754 ATCCAACGGCTGAGGAGCTC 61.966 60.000 4.71 4.71 45.44 4.09
388 2032 1.965754 GATCCAACGGCTGAGGAGCT 61.966 60.000 16.25 0.00 45.44 4.09
389 2033 1.522580 GATCCAACGGCTGAGGAGC 60.523 63.158 14.94 12.73 45.40 4.70
390 2034 1.403814 TAGATCCAACGGCTGAGGAG 58.596 55.000 14.94 0.00 34.40 3.69
391 2035 2.088104 ATAGATCCAACGGCTGAGGA 57.912 50.000 12.66 12.66 35.59 3.71
392 2036 4.221703 AGATTATAGATCCAACGGCTGAGG 59.778 45.833 0.00 0.15 0.00 3.86
393 2037 5.398603 AGATTATAGATCCAACGGCTGAG 57.601 43.478 0.00 0.00 0.00 3.35
394 2038 6.569801 CGTTAGATTATAGATCCAACGGCTGA 60.570 42.308 0.00 0.00 38.70 4.26
395 2039 5.573282 CGTTAGATTATAGATCCAACGGCTG 59.427 44.000 10.43 0.00 38.70 4.85
396 2040 5.710984 CGTTAGATTATAGATCCAACGGCT 58.289 41.667 10.43 0.00 38.70 5.52
399 2043 5.793952 CGACCGTTAGATTATAGATCCAACG 59.206 44.000 11.07 11.07 40.80 4.10
400 2044 6.675987 ACGACCGTTAGATTATAGATCCAAC 58.324 40.000 0.00 0.00 0.00 3.77
401 2045 6.713903 AGACGACCGTTAGATTATAGATCCAA 59.286 38.462 0.00 0.00 0.00 3.53
402 2046 6.236409 AGACGACCGTTAGATTATAGATCCA 58.764 40.000 0.00 0.00 0.00 3.41
403 2047 6.740411 AGACGACCGTTAGATTATAGATCC 57.260 41.667 0.00 0.00 0.00 3.36
404 2048 7.011295 CCCTAGACGACCGTTAGATTATAGATC 59.989 44.444 0.00 0.00 0.00 2.75
405 2049 6.822676 CCCTAGACGACCGTTAGATTATAGAT 59.177 42.308 0.00 0.00 0.00 1.98
406 2050 6.014242 TCCCTAGACGACCGTTAGATTATAGA 60.014 42.308 0.00 0.00 0.00 1.98
407 2051 6.169094 TCCCTAGACGACCGTTAGATTATAG 58.831 44.000 0.00 0.00 0.00 1.31
408 2052 6.114187 TCCCTAGACGACCGTTAGATTATA 57.886 41.667 0.00 0.00 0.00 0.98
409 2053 4.978099 TCCCTAGACGACCGTTAGATTAT 58.022 43.478 0.00 0.00 0.00 1.28
410 2054 4.422073 TCCCTAGACGACCGTTAGATTA 57.578 45.455 0.00 0.00 0.00 1.75
411 2055 3.287867 TCCCTAGACGACCGTTAGATT 57.712 47.619 0.00 0.00 0.00 2.40
412 2056 3.147629 CATCCCTAGACGACCGTTAGAT 58.852 50.000 0.00 0.00 0.00 1.98
413 2057 2.569059 CATCCCTAGACGACCGTTAGA 58.431 52.381 0.00 0.00 0.00 2.10
414 2058 1.001597 GCATCCCTAGACGACCGTTAG 60.002 57.143 0.00 1.56 0.00 2.34
415 2059 1.027357 GCATCCCTAGACGACCGTTA 58.973 55.000 0.00 0.00 0.00 3.18
416 2060 1.814527 GCATCCCTAGACGACCGTT 59.185 57.895 0.00 0.00 0.00 4.44
417 2061 2.478890 CGCATCCCTAGACGACCGT 61.479 63.158 0.00 0.00 0.00 4.83
418 2062 2.331805 CGCATCCCTAGACGACCG 59.668 66.667 0.00 0.00 0.00 4.79
419 2063 1.170919 TAGCGCATCCCTAGACGACC 61.171 60.000 11.47 0.00 0.00 4.79
420 2064 0.238817 CTAGCGCATCCCTAGACGAC 59.761 60.000 11.47 0.00 35.41 4.34
421 2065 0.108019 TCTAGCGCATCCCTAGACGA 59.892 55.000 11.47 0.00 37.09 4.20
422 2066 1.131504 GATCTAGCGCATCCCTAGACG 59.868 57.143 11.47 0.00 42.78 4.18
423 2067 2.163412 CAGATCTAGCGCATCCCTAGAC 59.837 54.545 11.47 3.05 42.78 2.59
424 2068 2.441410 CAGATCTAGCGCATCCCTAGA 58.559 52.381 11.47 8.09 43.75 2.43
425 2069 1.476085 CCAGATCTAGCGCATCCCTAG 59.524 57.143 11.47 1.58 34.86 3.02
426 2070 1.203063 ACCAGATCTAGCGCATCCCTA 60.203 52.381 11.47 0.00 0.00 3.53
427 2071 0.470833 ACCAGATCTAGCGCATCCCT 60.471 55.000 11.47 0.00 0.00 4.20
428 2072 0.394565 AACCAGATCTAGCGCATCCC 59.605 55.000 11.47 0.00 0.00 3.85
429 2073 1.202580 ACAACCAGATCTAGCGCATCC 60.203 52.381 11.47 0.00 0.00 3.51
430 2074 2.231215 ACAACCAGATCTAGCGCATC 57.769 50.000 11.47 3.75 0.00 3.91
431 2075 3.819564 TTACAACCAGATCTAGCGCAT 57.180 42.857 11.47 0.00 0.00 4.73
432 2076 3.819564 ATTACAACCAGATCTAGCGCA 57.180 42.857 11.47 0.00 0.00 6.09
433 2077 4.148348 CGTTATTACAACCAGATCTAGCGC 59.852 45.833 0.00 0.00 0.00 5.92
434 2078 4.680110 CCGTTATTACAACCAGATCTAGCG 59.320 45.833 0.00 0.00 0.00 4.26
435 2079 5.690857 GTCCGTTATTACAACCAGATCTAGC 59.309 44.000 0.00 0.00 0.00 3.42
436 2080 7.040473 AGTCCGTTATTACAACCAGATCTAG 57.960 40.000 0.00 0.00 0.00 2.43
437 2081 7.341256 AGAAGTCCGTTATTACAACCAGATCTA 59.659 37.037 0.00 0.00 0.00 1.98
438 2082 5.934402 AGTCCGTTATTACAACCAGATCT 57.066 39.130 0.00 0.00 0.00 2.75
439 2083 6.338937 AGAAGTCCGTTATTACAACCAGATC 58.661 40.000 0.00 0.00 0.00 2.75
440 2084 6.295719 AGAAGTCCGTTATTACAACCAGAT 57.704 37.500 0.00 0.00 0.00 2.90
441 2085 5.733620 AGAAGTCCGTTATTACAACCAGA 57.266 39.130 0.00 0.00 0.00 3.86
442 2086 6.040878 CCTAGAAGTCCGTTATTACAACCAG 58.959 44.000 0.00 0.00 0.00 4.00
443 2087 5.105228 CCCTAGAAGTCCGTTATTACAACCA 60.105 44.000 0.00 0.00 0.00 3.67
444 2088 5.354767 CCCTAGAAGTCCGTTATTACAACC 58.645 45.833 0.00 0.00 0.00 3.77
445 2089 5.105187 ACCCCTAGAAGTCCGTTATTACAAC 60.105 44.000 0.00 0.00 0.00 3.32
446 2090 5.025453 ACCCCTAGAAGTCCGTTATTACAA 58.975 41.667 0.00 0.00 0.00 2.41
447 2091 4.403432 CACCCCTAGAAGTCCGTTATTACA 59.597 45.833 0.00 0.00 0.00 2.41
448 2092 4.403752 ACACCCCTAGAAGTCCGTTATTAC 59.596 45.833 0.00 0.00 0.00 1.89
449 2093 4.613437 ACACCCCTAGAAGTCCGTTATTA 58.387 43.478 0.00 0.00 0.00 0.98
450 2094 3.447950 ACACCCCTAGAAGTCCGTTATT 58.552 45.455 0.00 0.00 0.00 1.40
451 2095 3.111741 ACACCCCTAGAAGTCCGTTAT 57.888 47.619 0.00 0.00 0.00 1.89
452 2096 2.610438 ACACCCCTAGAAGTCCGTTA 57.390 50.000 0.00 0.00 0.00 3.18
453 2097 1.725803 AACACCCCTAGAAGTCCGTT 58.274 50.000 0.00 0.00 0.00 4.44
454 2098 1.725803 AAACACCCCTAGAAGTCCGT 58.274 50.000 0.00 0.00 0.00 4.69
455 2099 2.853235 AAAACACCCCTAGAAGTCCG 57.147 50.000 0.00 0.00 0.00 4.79
473 2117 7.816640 AGAGAGCTCGCACATTTATTTAAAAA 58.183 30.769 20.08 0.00 34.09 1.94
474 2118 7.377766 AGAGAGCTCGCACATTTATTTAAAA 57.622 32.000 20.08 0.00 34.09 1.52
475 2119 6.037172 GGAGAGAGCTCGCACATTTATTTAAA 59.963 38.462 20.08 0.00 42.25 1.52
476 2120 5.523916 GGAGAGAGCTCGCACATTTATTTAA 59.476 40.000 20.08 0.00 42.25 1.52
477 2121 5.050490 GGAGAGAGCTCGCACATTTATTTA 58.950 41.667 20.08 0.00 42.25 1.40
478 2122 3.873952 GGAGAGAGCTCGCACATTTATTT 59.126 43.478 20.08 0.00 42.25 1.40
479 2123 3.133721 AGGAGAGAGCTCGCACATTTATT 59.866 43.478 20.08 0.00 42.25 1.40
480 2124 2.697751 AGGAGAGAGCTCGCACATTTAT 59.302 45.455 20.08 0.00 42.25 1.40
481 2125 2.103373 AGGAGAGAGCTCGCACATTTA 58.897 47.619 20.08 0.00 42.25 1.40
482 2126 0.901124 AGGAGAGAGCTCGCACATTT 59.099 50.000 20.08 0.00 42.25 2.32
483 2127 0.901124 AAGGAGAGAGCTCGCACATT 59.099 50.000 20.08 14.21 42.25 2.71
484 2128 0.175302 CAAGGAGAGAGCTCGCACAT 59.825 55.000 20.08 8.31 42.25 3.21
485 2129 1.588597 CAAGGAGAGAGCTCGCACA 59.411 57.895 20.08 0.00 42.25 4.57
486 2130 1.153667 CCAAGGAGAGAGCTCGCAC 60.154 63.158 20.08 13.24 42.25 5.34
487 2131 3.011635 GCCAAGGAGAGAGCTCGCA 62.012 63.158 20.08 0.00 42.25 5.10
488 2132 2.202864 GCCAAGGAGAGAGCTCGC 60.203 66.667 9.76 9.76 42.25 5.03
489 2133 1.612395 AAGGCCAAGGAGAGAGCTCG 61.612 60.000 5.01 0.00 42.25 5.03
490 2134 0.617935 AAAGGCCAAGGAGAGAGCTC 59.382 55.000 5.01 5.27 40.54 4.09
491 2135 0.327591 CAAAGGCCAAGGAGAGAGCT 59.672 55.000 5.01 0.00 0.00 4.09
492 2136 0.679321 CCAAAGGCCAAGGAGAGAGC 60.679 60.000 5.01 0.00 0.00 4.09
493 2137 0.987294 TCCAAAGGCCAAGGAGAGAG 59.013 55.000 5.01 0.00 0.00 3.20
494 2138 1.673767 ATCCAAAGGCCAAGGAGAGA 58.326 50.000 5.01 0.00 34.40 3.10
495 2139 2.521547 AATCCAAAGGCCAAGGAGAG 57.478 50.000 5.01 0.00 34.40 3.20
496 2140 2.999185 AAATCCAAAGGCCAAGGAGA 57.001 45.000 5.01 0.00 34.40 3.71
497 2141 4.344104 TCTAAAATCCAAAGGCCAAGGAG 58.656 43.478 5.01 0.00 34.40 3.69
498 2142 4.396357 TCTAAAATCCAAAGGCCAAGGA 57.604 40.909 5.01 9.68 35.59 3.36
499 2143 4.100035 GGATCTAAAATCCAAAGGCCAAGG 59.900 45.833 5.01 3.16 38.09 3.61
500 2144 4.711355 TGGATCTAAAATCCAAAGGCCAAG 59.289 41.667 5.01 0.00 44.54 3.61
501 2145 4.682563 TGGATCTAAAATCCAAAGGCCAA 58.317 39.130 5.01 0.00 44.54 4.52
502 2146 4.329638 TGGATCTAAAATCCAAAGGCCA 57.670 40.909 5.01 0.00 44.54 5.36
509 2153 3.054728 TCAGCCGTTGGATCTAAAATCCA 60.055 43.478 2.63 2.63 45.71 3.41
510 2154 3.541632 TCAGCCGTTGGATCTAAAATCC 58.458 45.455 0.00 0.00 38.66 3.01
511 2155 4.442706 TCTCAGCCGTTGGATCTAAAATC 58.557 43.478 0.00 0.00 0.00 2.17
512 2156 4.487714 TCTCAGCCGTTGGATCTAAAAT 57.512 40.909 0.00 0.00 0.00 1.82
513 2157 3.973206 TCTCAGCCGTTGGATCTAAAA 57.027 42.857 0.00 0.00 0.00 1.52
514 2158 3.861840 CTTCTCAGCCGTTGGATCTAAA 58.138 45.455 0.00 0.00 0.00 1.85
515 2159 2.418746 GCTTCTCAGCCGTTGGATCTAA 60.419 50.000 0.00 0.00 40.61 2.10
516 2160 1.137086 GCTTCTCAGCCGTTGGATCTA 59.863 52.381 0.00 0.00 40.61 1.98
517 2161 0.107945 GCTTCTCAGCCGTTGGATCT 60.108 55.000 0.00 0.00 40.61 2.75
518 2162 2.388347 GCTTCTCAGCCGTTGGATC 58.612 57.895 0.00 0.00 40.61 3.36
519 2163 4.625800 GCTTCTCAGCCGTTGGAT 57.374 55.556 0.00 0.00 40.61 3.41
536 2180 0.605589 GATATCTGGTGCTCCGGGAG 59.394 60.000 19.95 19.95 40.36 4.30
537 2181 0.188587 AGATATCTGGTGCTCCGGGA 59.811 55.000 13.60 8.10 40.36 5.14
538 2182 1.001406 GAAGATATCTGGTGCTCCGGG 59.999 57.143 13.60 2.77 40.36 5.73
539 2183 1.001406 GGAAGATATCTGGTGCTCCGG 59.999 57.143 5.86 7.35 41.27 5.14
540 2184 1.001406 GGGAAGATATCTGGTGCTCCG 59.999 57.143 5.86 0.00 36.30 4.63
541 2185 2.050144 TGGGAAGATATCTGGTGCTCC 58.950 52.381 5.86 8.83 0.00 4.70
542 2186 5.188555 TCATATGGGAAGATATCTGGTGCTC 59.811 44.000 5.86 0.00 0.00 4.26
543 2187 5.046014 GTCATATGGGAAGATATCTGGTGCT 60.046 44.000 5.86 0.00 0.00 4.40
544 2188 5.181748 GTCATATGGGAAGATATCTGGTGC 58.818 45.833 5.86 0.00 0.00 5.01
545 2189 6.364568 TGTCATATGGGAAGATATCTGGTG 57.635 41.667 5.86 0.00 0.00 4.17
546 2190 6.789457 TCTTGTCATATGGGAAGATATCTGGT 59.211 38.462 5.86 0.00 0.00 4.00
547 2191 7.250032 TCTTGTCATATGGGAAGATATCTGG 57.750 40.000 5.86 0.00 0.00 3.86
548 2192 7.038445 ACCTCTTGTCATATGGGAAGATATCTG 60.038 40.741 5.86 0.00 0.00 2.90
549 2193 7.021873 ACCTCTTGTCATATGGGAAGATATCT 58.978 38.462 14.19 0.00 0.00 1.98
550 2194 7.251321 ACCTCTTGTCATATGGGAAGATATC 57.749 40.000 14.19 0.00 0.00 1.63
551 2195 7.639062 AACCTCTTGTCATATGGGAAGATAT 57.361 36.000 14.19 6.46 0.00 1.63
552 2196 7.348274 AGAAACCTCTTGTCATATGGGAAGATA 59.652 37.037 14.19 0.00 0.00 1.98
553 2197 5.983333 AACCTCTTGTCATATGGGAAGAT 57.017 39.130 14.19 2.94 0.00 2.40
554 2198 5.488919 AGAAACCTCTTGTCATATGGGAAGA 59.511 40.000 13.50 13.50 0.00 2.87
555 2199 5.749462 AGAAACCTCTTGTCATATGGGAAG 58.251 41.667 2.13 5.68 0.00 3.46
556 2200 5.488919 AGAGAAACCTCTTGTCATATGGGAA 59.511 40.000 2.13 0.00 37.76 3.97
557 2201 5.032846 AGAGAAACCTCTTGTCATATGGGA 58.967 41.667 2.13 0.00 37.76 4.37
558 2202 5.365021 AGAGAAACCTCTTGTCATATGGG 57.635 43.478 2.13 0.00 37.76 4.00
575 2219 6.466812 TCTCACACATTATTGAGCAAGAGAA 58.533 36.000 0.00 0.00 39.36 2.87
576 2220 6.041423 TCTCACACATTATTGAGCAAGAGA 57.959 37.500 0.00 0.00 39.36 3.10
577 2221 6.104665 TCTCTCACACATTATTGAGCAAGAG 58.895 40.000 0.00 0.00 39.36 2.85
578 2222 6.041423 TCTCTCACACATTATTGAGCAAGA 57.959 37.500 0.00 0.00 39.36 3.02
579 2223 6.675002 GCTTCTCTCACACATTATTGAGCAAG 60.675 42.308 0.00 0.00 39.36 4.01
580 2224 5.122869 GCTTCTCTCACACATTATTGAGCAA 59.877 40.000 0.00 0.00 39.36 3.91
581 2225 4.633126 GCTTCTCTCACACATTATTGAGCA 59.367 41.667 0.00 0.00 39.36 4.26
582 2226 4.633126 TGCTTCTCTCACACATTATTGAGC 59.367 41.667 0.00 0.00 39.36 4.26
583 2227 6.922247 ATGCTTCTCTCACACATTATTGAG 57.078 37.500 0.00 0.00 40.65 3.02
740 2453 1.820519 GAACAGGGAAATGCAGCATGA 59.179 47.619 9.18 0.00 39.69 3.07
750 2463 0.464870 TTGTCGGACGAACAGGGAAA 59.535 50.000 3.34 0.00 0.00 3.13
752 2465 1.663739 CTTGTCGGACGAACAGGGA 59.336 57.895 3.34 0.00 0.00 4.20
755 2472 2.027625 GGCCTTGTCGGACGAACAG 61.028 63.158 3.34 0.00 33.16 3.16
813 2530 0.038166 CCATGGTTGTAGCTGTGGGT 59.962 55.000 2.57 0.00 0.00 4.51
814 2531 0.038166 ACCATGGTTGTAGCTGTGGG 59.962 55.000 13.00 0.00 0.00 4.61
901 2627 1.077005 AGAGTGGAGAGAAGAGCAGGT 59.923 52.381 0.00 0.00 0.00 4.00
949 2682 4.884744 TCTCTCTATTCCTCTCTCAAACCG 59.115 45.833 0.00 0.00 0.00 4.44
954 2687 4.919510 AGGGATCTCTCTATTCCTCTCTCA 59.080 45.833 0.00 0.00 27.28 3.27
989 2722 4.406972 TCACTACCTCCATGGATCTCTTTG 59.593 45.833 16.63 8.79 39.71 2.77
999 2742 2.234661 TGAAGCACTCACTACCTCCATG 59.765 50.000 0.00 0.00 0.00 3.66
1105 2848 2.808315 GGATCTGAGCGAGCGGAA 59.192 61.111 0.00 0.00 0.00 4.30
1290 3033 1.002544 CGGAAGAACTCCTTGAAGCCT 59.997 52.381 0.00 0.00 42.85 4.58
1311 3054 0.242286 TGAGTCTGCGAGCAGTCTTC 59.758 55.000 21.63 17.57 41.17 2.87
1324 3067 0.907230 GAGCCCAGGGTCTTGAGTCT 60.907 60.000 7.55 0.00 39.31 3.24
1326 3069 1.920835 GGAGCCCAGGGTCTTGAGT 60.921 63.158 15.10 0.00 41.80 3.41
1359 3102 3.007506 TCTTCAGATCGTTGGTTTGGCTA 59.992 43.478 0.00 0.00 0.00 3.93
1367 3110 4.931601 TGAGACAAATCTTCAGATCGTTGG 59.068 41.667 6.30 0.00 34.34 3.77
1384 3127 5.365605 TCAACTCTTTTACCTCCTTGAGACA 59.634 40.000 0.00 0.00 0.00 3.41
1663 3406 2.545946 GTGAGACAGAGACAAAAGCCAC 59.454 50.000 0.00 0.00 0.00 5.01
1664 3407 2.170397 TGTGAGACAGAGACAAAAGCCA 59.830 45.455 0.00 0.00 0.00 4.75
1751 3495 1.202463 CCCAGCTGTCGATACCTTCTG 60.202 57.143 13.81 0.00 0.00 3.02
1766 3510 6.327934 GCAATACATTTCATATCATCCCAGC 58.672 40.000 0.00 0.00 0.00 4.85
2124 3868 5.683876 ATTTCACTACCTACAGTCATGCT 57.316 39.130 0.00 0.00 0.00 3.79
2125 3869 6.806751 TCTATTTCACTACCTACAGTCATGC 58.193 40.000 0.00 0.00 0.00 4.06
2126 3870 9.469807 GATTCTATTTCACTACCTACAGTCATG 57.530 37.037 0.00 0.00 0.00 3.07
2127 3871 9.201989 TGATTCTATTTCACTACCTACAGTCAT 57.798 33.333 0.00 0.00 0.00 3.06
2128 3872 8.589701 TGATTCTATTTCACTACCTACAGTCA 57.410 34.615 0.00 0.00 0.00 3.41
2129 3873 9.871238 TTTGATTCTATTTCACTACCTACAGTC 57.129 33.333 0.00 0.00 0.00 3.51
2130 3874 9.877178 CTTTGATTCTATTTCACTACCTACAGT 57.123 33.333 0.00 0.00 0.00 3.55
2131 3875 8.821894 GCTTTGATTCTATTTCACTACCTACAG 58.178 37.037 0.00 0.00 0.00 2.74
2132 3876 8.540388 AGCTTTGATTCTATTTCACTACCTACA 58.460 33.333 0.00 0.00 0.00 2.74
2133 3877 8.950208 AGCTTTGATTCTATTTCACTACCTAC 57.050 34.615 0.00 0.00 0.00 3.18
2135 3879 9.959721 TTTAGCTTTGATTCTATTTCACTACCT 57.040 29.630 0.00 0.00 0.00 3.08
2179 4132 9.871238 GAGTCCTTTCAGTACATCACTAATAAA 57.129 33.333 0.00 0.00 34.98 1.40
2196 4153 8.384365 GTTCTCGAGAAATATTTGAGTCCTTTC 58.616 37.037 28.58 7.04 35.58 2.62
2200 4157 6.342111 AGGTTCTCGAGAAATATTTGAGTCC 58.658 40.000 28.58 19.91 35.58 3.85
2230 4188 5.810587 CAGCCTACATGTAAGTTATTCGTGT 59.189 40.000 7.06 4.37 35.79 4.49
2233 4191 6.533723 TCAACAGCCTACATGTAAGTTATTCG 59.466 38.462 7.06 0.00 0.00 3.34
2241 4199 7.230510 ACTCATTTTTCAACAGCCTACATGTAA 59.769 33.333 7.06 0.00 0.00 2.41
2318 4281 9.275398 ACTATTTTCGTCCATAACACTTGTTTA 57.725 29.630 0.00 0.00 39.31 2.01
2342 4305 6.402550 GCATCATTTCACAATACTTGTCGACT 60.403 38.462 17.92 0.00 43.23 4.18
2343 4306 5.734498 GCATCATTTCACAATACTTGTCGAC 59.266 40.000 9.11 9.11 43.23 4.20
2345 4308 4.725280 CGCATCATTTCACAATACTTGTCG 59.275 41.667 0.00 0.00 43.23 4.35
2433 5343 4.926244 AGACTTCACACATAGATGTAGCG 58.074 43.478 0.00 0.00 39.39 4.26
2447 5357 6.613755 TTGCTTACTTTACCAAGACTTCAC 57.386 37.500 0.00 0.00 33.72 3.18
2460 5376 2.293122 TCATGCGCACTTTGCTTACTTT 59.707 40.909 14.90 0.00 42.25 2.66
2503 5444 8.108551 ACTGAACGAGTTATGTAAGTTCTACT 57.891 34.615 7.90 0.00 41.05 2.57
2509 5450 7.655490 ACAAGTACTGAACGAGTTATGTAAGT 58.345 34.615 0.00 0.00 35.96 2.24
2514 5455 6.323266 AGCTACAAGTACTGAACGAGTTATG 58.677 40.000 0.00 0.00 35.96 1.90
2521 5462 8.906693 CATCATATAAGCTACAAGTACTGAACG 58.093 37.037 0.00 0.00 0.00 3.95
2525 5466 8.824159 AAGCATCATATAAGCTACAAGTACTG 57.176 34.615 0.00 0.00 37.70 2.74
2621 5579 7.197071 TGTATAATGAATTCAACCATACCGC 57.803 36.000 22.11 9.00 0.00 5.68
2688 5652 7.659799 AGATATAAGTGCATATTGTTAACCGCA 59.340 33.333 2.48 1.71 0.00 5.69
2718 5688 2.197465 CCCCCTTTTCTACTAGTGCCT 58.803 52.381 5.39 0.00 0.00 4.75
2719 5689 1.408405 GCCCCCTTTTCTACTAGTGCC 60.408 57.143 5.39 0.00 0.00 5.01
2720 5690 1.560146 AGCCCCCTTTTCTACTAGTGC 59.440 52.381 5.39 0.00 0.00 4.40
2721 5691 4.302559 AAAGCCCCCTTTTCTACTAGTG 57.697 45.455 5.39 0.00 38.06 2.74
2722 5692 4.105858 ACAAAAGCCCCCTTTTCTACTAGT 59.894 41.667 0.00 0.00 45.64 2.57
2723 5693 4.663334 ACAAAAGCCCCCTTTTCTACTAG 58.337 43.478 0.00 0.00 45.64 2.57
2724 5694 4.507869 GGACAAAAGCCCCCTTTTCTACTA 60.508 45.833 0.00 0.00 45.64 1.82
2725 5695 3.497332 GACAAAAGCCCCCTTTTCTACT 58.503 45.455 0.00 0.00 45.64 2.57
2726 5696 2.561419 GGACAAAAGCCCCCTTTTCTAC 59.439 50.000 0.00 0.00 45.64 2.59
2727 5697 2.492010 GGGACAAAAGCCCCCTTTTCTA 60.492 50.000 0.00 0.00 45.64 2.10
2728 5698 1.717032 GGACAAAAGCCCCCTTTTCT 58.283 50.000 0.00 0.00 45.64 2.52
2729 5699 0.685097 GGGACAAAAGCCCCCTTTTC 59.315 55.000 0.00 0.00 45.64 2.29
2731 5701 1.533033 CGGGACAAAAGCCCCCTTT 60.533 57.895 0.00 0.00 42.92 3.11
2732 5702 2.117423 CGGGACAAAAGCCCCCTT 59.883 61.111 0.00 0.00 42.92 3.95
2733 5703 3.979497 CCGGGACAAAAGCCCCCT 61.979 66.667 0.00 0.00 42.92 4.79
2734 5704 3.820825 AACCGGGACAAAAGCCCCC 62.821 63.158 6.32 0.00 42.92 5.40
2735 5705 2.203582 AACCGGGACAAAAGCCCC 60.204 61.111 6.32 0.00 42.92 5.80
2736 5706 2.570284 CCAACCGGGACAAAAGCCC 61.570 63.158 6.32 0.00 42.41 5.19
2737 5707 0.537828 TACCAACCGGGACAAAAGCC 60.538 55.000 6.32 0.00 41.15 4.35
2738 5708 1.268625 CTTACCAACCGGGACAAAAGC 59.731 52.381 6.32 0.00 41.15 3.51
2739 5709 1.883926 CCTTACCAACCGGGACAAAAG 59.116 52.381 6.32 3.70 41.15 2.27
2740 5710 1.479021 CCCTTACCAACCGGGACAAAA 60.479 52.381 6.32 0.00 40.55 2.44
2741 5711 0.110869 CCCTTACCAACCGGGACAAA 59.889 55.000 6.32 0.00 40.55 2.83
2742 5712 1.762471 CCCTTACCAACCGGGACAA 59.238 57.895 6.32 0.00 40.55 3.18
2743 5713 2.897762 GCCCTTACCAACCGGGACA 61.898 63.158 6.32 0.00 40.55 4.02
2744 5714 2.045634 GCCCTTACCAACCGGGAC 60.046 66.667 6.32 0.00 40.55 4.46
2745 5715 1.428718 AAAGCCCTTACCAACCGGGA 61.429 55.000 6.32 0.00 40.55 5.14
2746 5716 0.541063 AAAAGCCCTTACCAACCGGG 60.541 55.000 6.32 0.00 44.81 5.73
2747 5717 2.089201 CTAAAAGCCCTTACCAACCGG 58.911 52.381 0.00 0.00 38.77 5.28
2748 5718 2.745821 GACTAAAAGCCCTTACCAACCG 59.254 50.000 0.00 0.00 0.00 4.44
2749 5719 3.087031 GGACTAAAAGCCCTTACCAACC 58.913 50.000 0.00 0.00 0.00 3.77
2750 5720 3.087031 GGGACTAAAAGCCCTTACCAAC 58.913 50.000 0.00 0.00 41.31 3.77
2751 5721 2.290450 CGGGACTAAAAGCCCTTACCAA 60.290 50.000 0.00 0.00 42.40 3.67
2752 5722 1.279846 CGGGACTAAAAGCCCTTACCA 59.720 52.381 0.00 0.00 42.40 3.25
2753 5723 1.407851 CCGGGACTAAAAGCCCTTACC 60.408 57.143 0.00 0.00 42.40 2.85
2754 5724 1.280133 ACCGGGACTAAAAGCCCTTAC 59.720 52.381 6.32 0.00 42.40 2.34
2755 5725 1.660242 ACCGGGACTAAAAGCCCTTA 58.340 50.000 6.32 0.00 42.40 2.69
2756 5726 0.775542 AACCGGGACTAAAAGCCCTT 59.224 50.000 6.32 0.00 42.40 3.95
2757 5727 0.775542 AAACCGGGACTAAAAGCCCT 59.224 50.000 6.32 0.00 42.40 5.19
2758 5728 1.624336 AAAACCGGGACTAAAAGCCC 58.376 50.000 6.32 0.00 41.11 5.19
2759 5729 2.624364 TCAAAAACCGGGACTAAAAGCC 59.376 45.455 6.32 0.00 0.00 4.35
2760 5730 3.994204 TCAAAAACCGGGACTAAAAGC 57.006 42.857 6.32 0.00 0.00 3.51
2761 5731 4.613944 GGTTCAAAAACCGGGACTAAAAG 58.386 43.478 6.32 0.00 45.33 2.27
2762 5732 4.652421 GGTTCAAAAACCGGGACTAAAA 57.348 40.909 6.32 0.00 45.33 1.52
2773 5743 3.005050 CCCTTTAGTCCCGGTTCAAAAAC 59.995 47.826 0.00 0.00 34.46 2.43
2774 5744 3.224269 CCCTTTAGTCCCGGTTCAAAAA 58.776 45.455 0.00 0.00 0.00 1.94
2775 5745 2.175284 ACCCTTTAGTCCCGGTTCAAAA 59.825 45.455 0.00 0.00 0.00 2.44
2776 5746 1.776063 ACCCTTTAGTCCCGGTTCAAA 59.224 47.619 0.00 0.00 0.00 2.69
2777 5747 1.348696 GACCCTTTAGTCCCGGTTCAA 59.651 52.381 0.00 0.00 0.00 2.69
2778 5748 0.978907 GACCCTTTAGTCCCGGTTCA 59.021 55.000 0.00 0.00 0.00 3.18
2779 5749 0.108472 CGACCCTTTAGTCCCGGTTC 60.108 60.000 0.00 0.00 32.91 3.62
2780 5750 0.833409 ACGACCCTTTAGTCCCGGTT 60.833 55.000 0.00 0.00 32.91 4.44
2781 5751 0.833409 AACGACCCTTTAGTCCCGGT 60.833 55.000 0.00 0.00 32.91 5.28
2782 5752 1.134995 GTAACGACCCTTTAGTCCCGG 60.135 57.143 0.00 0.00 32.91 5.73
2783 5753 1.821136 AGTAACGACCCTTTAGTCCCG 59.179 52.381 0.00 0.00 32.91 5.14
2784 5754 5.354767 CATTAGTAACGACCCTTTAGTCCC 58.645 45.833 0.00 0.00 32.91 4.46
2785 5755 4.807834 GCATTAGTAACGACCCTTTAGTCC 59.192 45.833 0.00 0.00 32.91 3.85
2786 5756 4.807834 GGCATTAGTAACGACCCTTTAGTC 59.192 45.833 0.00 0.00 0.00 2.59
2787 5757 4.468868 AGGCATTAGTAACGACCCTTTAGT 59.531 41.667 0.00 0.00 0.00 2.24
2788 5758 5.019785 AGGCATTAGTAACGACCCTTTAG 57.980 43.478 0.00 0.00 0.00 1.85
2789 5759 4.141869 GGAGGCATTAGTAACGACCCTTTA 60.142 45.833 0.00 0.00 0.00 1.85
2790 5760 3.370209 GGAGGCATTAGTAACGACCCTTT 60.370 47.826 0.00 0.00 0.00 3.11
2791 5761 2.169978 GGAGGCATTAGTAACGACCCTT 59.830 50.000 0.00 0.00 0.00 3.95
2792 5762 1.761198 GGAGGCATTAGTAACGACCCT 59.239 52.381 0.00 0.00 0.00 4.34
2793 5763 1.202615 GGGAGGCATTAGTAACGACCC 60.203 57.143 0.00 0.00 0.00 4.46
2794 5764 1.202615 GGGGAGGCATTAGTAACGACC 60.203 57.143 0.00 0.00 0.00 4.79
2795 5765 1.202615 GGGGGAGGCATTAGTAACGAC 60.203 57.143 0.00 0.00 0.00 4.34
2796 5766 1.125633 GGGGGAGGCATTAGTAACGA 58.874 55.000 0.00 0.00 0.00 3.85
2797 5767 3.700198 GGGGGAGGCATTAGTAACG 57.300 57.895 0.00 0.00 0.00 3.18
2812 5782 0.912968 AGAACCGGGACTAAAGGGGG 60.913 60.000 6.32 0.00 0.00 5.40
2813 5783 0.989602 AAGAACCGGGACTAAAGGGG 59.010 55.000 6.32 0.00 0.00 4.79
2814 5784 2.568509 TGTAAGAACCGGGACTAAAGGG 59.431 50.000 6.32 0.00 0.00 3.95
2815 5785 3.593096 GTGTAAGAACCGGGACTAAAGG 58.407 50.000 6.32 0.00 0.00 3.11
2816 5786 3.057315 TCGTGTAAGAACCGGGACTAAAG 60.057 47.826 6.32 0.00 0.00 1.85
2817 5787 2.890311 TCGTGTAAGAACCGGGACTAAA 59.110 45.455 6.32 0.00 0.00 1.85
2818 5788 2.513753 TCGTGTAAGAACCGGGACTAA 58.486 47.619 6.32 0.00 0.00 2.24
2819 5789 2.198827 TCGTGTAAGAACCGGGACTA 57.801 50.000 6.32 0.00 0.00 2.59
2820 5790 1.000171 GTTCGTGTAAGAACCGGGACT 60.000 52.381 6.32 0.73 43.33 3.85
2821 5791 1.422388 GTTCGTGTAAGAACCGGGAC 58.578 55.000 6.32 0.00 43.33 4.46
2822 5792 3.892200 GTTCGTGTAAGAACCGGGA 57.108 52.632 6.32 0.00 43.33 5.14
2828 5798 1.331214 AGTCCCGGTTCGTGTAAGAA 58.669 50.000 0.00 0.00 0.00 2.52
2829 5799 2.198827 TAGTCCCGGTTCGTGTAAGA 57.801 50.000 0.00 0.00 0.00 2.10
2830 5800 3.248266 CTTTAGTCCCGGTTCGTGTAAG 58.752 50.000 0.00 0.00 0.00 2.34
2831 5801 2.029110 CCTTTAGTCCCGGTTCGTGTAA 60.029 50.000 0.00 0.00 0.00 2.41
2832 5802 1.545582 CCTTTAGTCCCGGTTCGTGTA 59.454 52.381 0.00 0.00 0.00 2.90
2833 5803 0.319405 CCTTTAGTCCCGGTTCGTGT 59.681 55.000 0.00 0.00 0.00 4.49
2834 5804 0.319405 ACCTTTAGTCCCGGTTCGTG 59.681 55.000 0.00 0.00 0.00 4.35
2835 5805 0.605083 GACCTTTAGTCCCGGTTCGT 59.395 55.000 0.00 0.00 39.84 3.85
2836 5806 0.457337 CGACCTTTAGTCCCGGTTCG 60.457 60.000 0.00 0.00 43.08 3.95
2837 5807 0.605083 ACGACCTTTAGTCCCGGTTC 59.395 55.000 0.00 0.00 43.08 3.62
2838 5808 0.605083 GACGACCTTTAGTCCCGGTT 59.395 55.000 0.00 0.00 43.08 4.44
2839 5809 2.270959 GACGACCTTTAGTCCCGGT 58.729 57.895 0.00 0.00 43.08 5.28
2844 5814 1.668047 CCACGTGGACGACCTTTAGTC 60.668 57.143 31.31 0.00 43.02 2.59
2845 5815 0.316204 CCACGTGGACGACCTTTAGT 59.684 55.000 31.31 0.00 43.02 2.24
2846 5816 0.599558 TCCACGTGGACGACCTTTAG 59.400 55.000 33.23 3.29 43.02 1.85
2847 5817 2.730990 TCCACGTGGACGACCTTTA 58.269 52.632 33.23 8.06 43.02 1.85
2848 5818 3.541072 TCCACGTGGACGACCTTT 58.459 55.556 33.23 0.00 43.02 3.11
2870 5840 1.383523 GTTGGTATGAAGCTCCAGGC 58.616 55.000 0.00 0.00 42.19 4.85
2871 5841 1.743772 CGGTTGGTATGAAGCTCCAGG 60.744 57.143 0.00 0.00 32.63 4.45
2872 5842 1.656652 CGGTTGGTATGAAGCTCCAG 58.343 55.000 0.00 0.00 32.63 3.86
2873 5843 0.251916 CCGGTTGGTATGAAGCTCCA 59.748 55.000 0.00 0.00 0.00 3.86
2874 5844 0.463833 CCCGGTTGGTATGAAGCTCC 60.464 60.000 0.00 0.00 0.00 4.70
2875 5845 0.539986 TCCCGGTTGGTATGAAGCTC 59.460 55.000 0.00 0.00 34.77 4.09
2876 5846 0.252197 GTCCCGGTTGGTATGAAGCT 59.748 55.000 0.00 0.00 34.77 3.74
2877 5847 0.252197 AGTCCCGGTTGGTATGAAGC 59.748 55.000 0.00 0.00 34.77 3.86
2878 5848 3.899052 TTAGTCCCGGTTGGTATGAAG 57.101 47.619 0.00 0.00 34.77 3.02
2879 5849 3.839490 TCTTTAGTCCCGGTTGGTATGAA 59.161 43.478 0.00 0.00 34.77 2.57
2880 5850 3.443052 TCTTTAGTCCCGGTTGGTATGA 58.557 45.455 0.00 0.00 34.77 2.15
2881 5851 3.899052 TCTTTAGTCCCGGTTGGTATG 57.101 47.619 0.00 0.00 34.77 2.39
2882 5852 4.914177 TTTCTTTAGTCCCGGTTGGTAT 57.086 40.909 0.00 0.00 34.77 2.73
2883 5853 4.703379 TTTTCTTTAGTCCCGGTTGGTA 57.297 40.909 0.00 0.00 34.77 3.25
2884 5854 3.581265 TTTTCTTTAGTCCCGGTTGGT 57.419 42.857 0.00 0.00 34.77 3.67
2885 5855 5.462530 AAATTTTCTTTAGTCCCGGTTGG 57.537 39.130 0.00 0.00 0.00 3.77
2886 5856 8.301002 TCATAAAATTTTCTTTAGTCCCGGTTG 58.699 33.333 6.72 0.00 0.00 3.77
2887 5857 8.411991 TCATAAAATTTTCTTTAGTCCCGGTT 57.588 30.769 6.72 0.00 0.00 4.44
2888 5858 8.589701 ATCATAAAATTTTCTTTAGTCCCGGT 57.410 30.769 6.72 0.00 0.00 5.28
2930 5900 9.727627 GATTAGAGATCAGAATTCGCAAATTTT 57.272 29.630 0.00 0.00 35.21 1.82
2931 5901 8.896744 TGATTAGAGATCAGAATTCGCAAATTT 58.103 29.630 0.00 0.00 35.21 1.82
2932 5902 8.341173 GTGATTAGAGATCAGAATTCGCAAATT 58.659 33.333 0.00 0.00 37.80 1.82
2933 5903 7.041508 GGTGATTAGAGATCAGAATTCGCAAAT 60.042 37.037 0.00 0.00 0.00 2.32
2934 5904 6.258727 GGTGATTAGAGATCAGAATTCGCAAA 59.741 38.462 0.00 0.00 0.00 3.68
2935 5905 5.755375 GGTGATTAGAGATCAGAATTCGCAA 59.245 40.000 0.00 0.00 0.00 4.85
2936 5906 5.163416 TGGTGATTAGAGATCAGAATTCGCA 60.163 40.000 0.00 0.00 0.00 5.10
2937 5907 5.176590 GTGGTGATTAGAGATCAGAATTCGC 59.823 44.000 0.00 0.00 0.00 4.70
2938 5908 5.694006 GGTGGTGATTAGAGATCAGAATTCG 59.306 44.000 0.00 0.00 0.00 3.34
2939 5909 5.994668 GGGTGGTGATTAGAGATCAGAATTC 59.005 44.000 0.00 0.00 0.00 2.17
2940 5910 5.163152 GGGGTGGTGATTAGAGATCAGAATT 60.163 44.000 0.00 0.00 0.00 2.17
2941 5911 4.349342 GGGGTGGTGATTAGAGATCAGAAT 59.651 45.833 0.00 0.00 0.00 2.40
2942 5912 3.711704 GGGGTGGTGATTAGAGATCAGAA 59.288 47.826 0.00 0.00 0.00 3.02
2946 5916 3.309296 TGAGGGGTGGTGATTAGAGATC 58.691 50.000 0.00 0.00 0.00 2.75
3125 6096 7.782049 AGAATTGACATCTTACTATTGTCGGA 58.218 34.615 0.00 0.00 42.07 4.55
3359 6378 4.142271 GGTCAAACTGTGGTCAAACAATGA 60.142 41.667 0.00 0.00 35.05 2.57
3707 6896 1.668826 AGGGCCCATCAAACTCTACA 58.331 50.000 27.56 0.00 0.00 2.74
4027 7226 4.455877 GCATACTTTATAGTGTCCCATGCC 59.544 45.833 6.71 0.00 36.22 4.40
4154 7353 2.428890 AGTCGAGATCACTTAGGGCTTG 59.571 50.000 0.00 0.00 0.00 4.01
4210 7410 2.161012 CACATCAGGACAACAGTCATGC 59.839 50.000 5.49 0.00 42.18 4.06
4211 7411 2.161012 GCACATCAGGACAACAGTCATG 59.839 50.000 4.09 4.09 43.40 3.07
4213 7413 1.417517 AGCACATCAGGACAACAGTCA 59.582 47.619 0.00 0.00 33.90 3.41
4222 7422 7.048629 TGAAATTTGTTTTAGCACATCAGGA 57.951 32.000 0.00 0.00 0.00 3.86
4251 7451 4.038402 GGCCTCCACATTTCCTCAATATTG 59.962 45.833 9.29 9.29 0.00 1.90
4382 8114 6.003326 TGTTGTTCATTCCATCTAAGCTTCA 58.997 36.000 0.00 0.00 0.00 3.02
4402 8134 8.367911 TCATTGTAGCTAAGGGATAGTATGTTG 58.632 37.037 0.00 0.00 33.87 3.33
4433 8636 3.077359 AGCATGTCTTCAAGTTAGGTGC 58.923 45.455 0.00 0.00 0.00 5.01
4495 8732 6.042093 TCCATCGCCTCACTAAAATATCTCTT 59.958 38.462 0.00 0.00 0.00 2.85
4647 10045 5.255687 TCATGTCATGGACTTTACAAGCAT 58.744 37.500 12.90 0.00 33.15 3.79
4761 10159 1.002251 GGAGAGACAGTCGCCGAATAG 60.002 57.143 0.00 0.00 35.14 1.73
4774 10172 3.827008 TGGTCAATATGCTGGAGAGAC 57.173 47.619 0.00 0.00 0.00 3.36
4778 10176 2.877168 GCTCTTGGTCAATATGCTGGAG 59.123 50.000 0.00 0.00 0.00 3.86
4815 10213 5.760253 CGTACATGGCTTAGATCCTCATTTT 59.240 40.000 0.00 0.00 0.00 1.82
4822 10220 4.461081 AGAGATCGTACATGGCTTAGATCC 59.539 45.833 0.00 0.06 36.19 3.36
4848 10246 5.673514 TGATGCAAGTTGATGCTATCACTA 58.326 37.500 7.16 0.00 46.54 2.74
5209 10607 2.644555 TAAAGCCCGAGATCGCCTGC 62.645 60.000 0.00 0.00 38.18 4.85
5251 10649 2.125912 CCCAGTTCCTCGACTGCG 60.126 66.667 0.00 0.00 44.45 5.18
5333 10731 4.376146 GAGAGTAACATCTCTTCATGCCC 58.624 47.826 0.00 0.00 43.74 5.36
5540 10938 9.473007 TTCAATCAAATTAATGTCCAGGTATGA 57.527 29.630 0.00 0.00 0.00 2.15
5714 11112 4.900635 AGTAAATTGCGATTCCATGACC 57.099 40.909 0.00 0.00 0.00 4.02
5717 11115 4.730042 CGTCAAGTAAATTGCGATTCCATG 59.270 41.667 0.00 0.00 39.32 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.