Multiple sequence alignment - TraesCS6D01G372600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G372600 chr6D 100.000 2696 0 0 1 2696 457639862 457637167 0.000000e+00 4979
1 TraesCS6D01G372600 chr6D 87.500 176 18 4 222 396 4031468 4031296 1.640000e-47 200
2 TraesCS6D01G372600 chr6A 91.278 1846 130 16 589 2418 604579469 604577639 0.000000e+00 2488
3 TraesCS6D01G372600 chr6A 93.182 264 13 3 2434 2696 604574644 604574385 1.510000e-102 383
4 TraesCS6D01G372600 chr6A 87.500 176 20 2 222 397 234145198 234145025 4.550000e-48 202
5 TraesCS6D01G372600 chr6A 87.079 178 19 3 217 393 44883598 44883424 5.890000e-47 198
6 TraesCS6D01G372600 chr6A 82.249 169 10 9 391 557 604579615 604579465 7.830000e-26 128
7 TraesCS6D01G372600 chr6B 91.860 1425 73 14 461 1882 696113461 696112077 0.000000e+00 1949
8 TraesCS6D01G372600 chr6B 96.121 593 22 1 1878 2470 696101527 696100936 0.000000e+00 966
9 TraesCS6D01G372600 chr6B 92.713 247 17 1 2451 2696 696100902 696100656 3.300000e-94 355
10 TraesCS6D01G372600 chr2D 78.264 1279 183 52 880 2105 21770753 21771989 0.000000e+00 734
11 TraesCS6D01G372600 chr2D 79.647 1076 170 31 880 1941 21743018 21744058 0.000000e+00 728
12 TraesCS6D01G372600 chr2D 77.628 1265 201 48 880 2105 21639692 21640913 0.000000e+00 693
13 TraesCS6D01G372600 chr2D 81.973 821 134 6 1007 1826 21617465 21618272 0.000000e+00 684
14 TraesCS6D01G372600 chr2D 77.265 1148 201 39 992 2105 21662191 21663312 1.060000e-173 619
15 TraesCS6D01G372600 chr2D 77.265 1148 201 39 992 2105 21678606 21679727 1.060000e-173 619
16 TraesCS6D01G372600 chr2A 79.462 1115 162 43 845 1939 23864226 23865293 0.000000e+00 728
17 TraesCS6D01G372600 chr2B 79.647 1076 168 32 879 1941 34867200 34866163 0.000000e+00 726
18 TraesCS6D01G372600 chr3A 86.545 275 28 5 2100 2374 475281321 475281056 7.300000e-76 294
19 TraesCS6D01G372600 chr3A 85.971 278 32 2 2096 2373 706868072 706867802 9.440000e-75 291
20 TraesCS6D01G372600 chr3A 88.202 178 18 1 222 399 37342030 37342204 2.720000e-50 209
21 TraesCS6D01G372600 chr3A 87.356 174 19 1 222 395 428568348 428568518 2.120000e-46 196
22 TraesCS6D01G372600 chr1A 86.447 273 30 4 2103 2374 434422940 434422674 2.630000e-75 292
23 TraesCS6D01G372600 chr5D 87.023 262 28 3 2104 2365 397198104 397198359 9.440000e-75 291
24 TraesCS6D01G372600 chr3B 85.866 283 27 6 2100 2380 97756147 97755876 3.400000e-74 289
25 TraesCS6D01G372600 chrUn 86.347 271 25 7 2096 2365 216298161 216298420 4.390000e-73 285
26 TraesCS6D01G372600 chr4D 86.347 271 25 7 2096 2365 131325794 131326053 4.390000e-73 285
27 TraesCS6D01G372600 chr4D 87.151 179 17 4 222 398 20232086 20231912 5.890000e-47 198
28 TraesCS6D01G372600 chr4B 85.714 280 28 7 2096 2374 166765781 166765513 4.390000e-73 285
29 TraesCS6D01G372600 chr5B 88.068 176 18 3 222 396 48871681 48871508 3.520000e-49 206
30 TraesCS6D01G372600 chr7D 88.000 175 18 1 222 396 628674512 628674683 1.270000e-48 204
31 TraesCS6D01G372600 chr7A 87.861 173 18 2 222 393 60050802 60050972 1.640000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G372600 chr6D 457637167 457639862 2695 True 4979.000000 4979 100.000 1 2696 1 chr6D.!!$R2 2695
1 TraesCS6D01G372600 chr6A 604574385 604579615 5230 True 999.666667 2488 88.903 391 2696 3 chr6A.!!$R3 2305
2 TraesCS6D01G372600 chr6B 696112077 696113461 1384 True 1949.000000 1949 91.860 461 1882 1 chr6B.!!$R1 1421
3 TraesCS6D01G372600 chr6B 696100656 696101527 871 True 660.500000 966 94.417 1878 2696 2 chr6B.!!$R2 818
4 TraesCS6D01G372600 chr2D 21770753 21771989 1236 False 734.000000 734 78.264 880 2105 1 chr2D.!!$F6 1225
5 TraesCS6D01G372600 chr2D 21743018 21744058 1040 False 728.000000 728 79.647 880 1941 1 chr2D.!!$F5 1061
6 TraesCS6D01G372600 chr2D 21639692 21640913 1221 False 693.000000 693 77.628 880 2105 1 chr2D.!!$F2 1225
7 TraesCS6D01G372600 chr2D 21617465 21618272 807 False 684.000000 684 81.973 1007 1826 1 chr2D.!!$F1 819
8 TraesCS6D01G372600 chr2D 21662191 21663312 1121 False 619.000000 619 77.265 992 2105 1 chr2D.!!$F3 1113
9 TraesCS6D01G372600 chr2D 21678606 21679727 1121 False 619.000000 619 77.265 992 2105 1 chr2D.!!$F4 1113
10 TraesCS6D01G372600 chr2A 23864226 23865293 1067 False 728.000000 728 79.462 845 1939 1 chr2A.!!$F1 1094
11 TraesCS6D01G372600 chr2B 34866163 34867200 1037 True 726.000000 726 79.647 879 1941 1 chr2B.!!$R1 1062

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.03582 TGAAAAATAGCGGCGGACCT 60.036 50.0 9.78 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 1810 0.392998 AGCAACATCGACCCCATCAC 60.393 55.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.919772 CCCCCTGACCCAACTTTTAT 57.080 50.000 0.00 0.00 0.00 1.40
20 21 3.184382 CCCCCTGACCCAACTTTTATT 57.816 47.619 0.00 0.00 0.00 1.40
21 22 4.325084 CCCCCTGACCCAACTTTTATTA 57.675 45.455 0.00 0.00 0.00 0.98
22 23 4.679331 CCCCCTGACCCAACTTTTATTAA 58.321 43.478 0.00 0.00 0.00 1.40
23 24 5.088026 CCCCCTGACCCAACTTTTATTAAA 58.912 41.667 0.00 0.00 0.00 1.52
24 25 5.186992 CCCCCTGACCCAACTTTTATTAAAG 59.813 44.000 2.71 2.71 45.08 1.85
25 26 5.186992 CCCCTGACCCAACTTTTATTAAAGG 59.813 44.000 8.90 0.00 44.10 3.11
26 27 5.337250 CCCTGACCCAACTTTTATTAAAGGC 60.337 44.000 8.90 0.00 44.10 4.35
27 28 5.245075 CCTGACCCAACTTTTATTAAAGGCA 59.755 40.000 8.90 0.00 44.10 4.75
28 29 6.239458 CCTGACCCAACTTTTATTAAAGGCAA 60.239 38.462 8.90 0.00 44.10 4.52
29 30 6.754193 TGACCCAACTTTTATTAAAGGCAAG 58.246 36.000 8.90 0.00 44.10 4.01
30 31 6.109156 ACCCAACTTTTATTAAAGGCAAGG 57.891 37.500 8.90 6.30 44.10 3.61
31 32 4.935205 CCCAACTTTTATTAAAGGCAAGGC 59.065 41.667 8.90 0.00 44.10 4.35
32 33 5.512232 CCCAACTTTTATTAAAGGCAAGGCA 60.512 40.000 8.90 0.00 44.10 4.75
33 34 5.994668 CCAACTTTTATTAAAGGCAAGGCAA 59.005 36.000 8.90 0.00 44.10 4.52
34 35 6.484977 CCAACTTTTATTAAAGGCAAGGCAAA 59.515 34.615 8.90 0.00 44.10 3.68
35 36 7.351981 CAACTTTTATTAAAGGCAAGGCAAAC 58.648 34.615 8.90 0.00 44.10 2.93
36 37 6.587273 ACTTTTATTAAAGGCAAGGCAAACA 58.413 32.000 8.90 0.00 44.10 2.83
37 38 7.223584 ACTTTTATTAAAGGCAAGGCAAACAT 58.776 30.769 8.90 0.00 44.10 2.71
38 39 7.387673 ACTTTTATTAAAGGCAAGGCAAACATC 59.612 33.333 8.90 0.00 44.10 3.06
39 40 3.676291 TTAAAGGCAAGGCAAACATCC 57.324 42.857 0.00 0.00 0.00 3.51
40 41 1.422531 AAAGGCAAGGCAAACATCCA 58.577 45.000 0.00 0.00 0.00 3.41
41 42 0.971386 AAGGCAAGGCAAACATCCAG 59.029 50.000 0.00 0.00 0.00 3.86
42 43 0.901580 AGGCAAGGCAAACATCCAGG 60.902 55.000 0.00 0.00 0.00 4.45
43 44 1.187567 GGCAAGGCAAACATCCAGGT 61.188 55.000 0.00 0.00 0.00 4.00
44 45 0.244721 GCAAGGCAAACATCCAGGTC 59.755 55.000 0.00 0.00 0.00 3.85
45 46 1.619654 CAAGGCAAACATCCAGGTCA 58.380 50.000 0.00 0.00 0.00 4.02
46 47 1.962807 CAAGGCAAACATCCAGGTCAA 59.037 47.619 0.00 0.00 0.00 3.18
47 48 1.620822 AGGCAAACATCCAGGTCAAC 58.379 50.000 0.00 0.00 0.00 3.18
48 49 0.240945 GGCAAACATCCAGGTCAACG 59.759 55.000 0.00 0.00 0.00 4.10
49 50 0.951558 GCAAACATCCAGGTCAACGT 59.048 50.000 0.00 0.00 0.00 3.99
50 51 1.336755 GCAAACATCCAGGTCAACGTT 59.663 47.619 0.00 0.00 0.00 3.99
51 52 2.223711 GCAAACATCCAGGTCAACGTTT 60.224 45.455 0.00 0.00 0.00 3.60
52 53 3.736740 GCAAACATCCAGGTCAACGTTTT 60.737 43.478 0.00 0.00 0.00 2.43
53 54 4.498345 GCAAACATCCAGGTCAACGTTTTA 60.498 41.667 0.00 0.00 0.00 1.52
54 55 5.768317 CAAACATCCAGGTCAACGTTTTAT 58.232 37.500 0.00 0.00 0.00 1.40
55 56 5.371115 AACATCCAGGTCAACGTTTTATG 57.629 39.130 0.00 0.00 0.00 1.90
56 57 4.647611 ACATCCAGGTCAACGTTTTATGA 58.352 39.130 0.00 0.00 0.00 2.15
57 58 4.454504 ACATCCAGGTCAACGTTTTATGAC 59.545 41.667 9.18 9.18 44.07 3.06
58 59 4.345859 TCCAGGTCAACGTTTTATGACT 57.654 40.909 15.60 2.35 44.20 3.41
59 60 4.312443 TCCAGGTCAACGTTTTATGACTC 58.688 43.478 15.60 7.84 44.20 3.36
60 61 4.039973 TCCAGGTCAACGTTTTATGACTCT 59.960 41.667 15.60 9.58 44.20 3.24
61 62 4.389077 CCAGGTCAACGTTTTATGACTCTC 59.611 45.833 15.60 2.45 44.20 3.20
62 63 4.988540 CAGGTCAACGTTTTATGACTCTCA 59.011 41.667 15.60 0.00 44.20 3.27
63 64 5.639506 CAGGTCAACGTTTTATGACTCTCAT 59.360 40.000 15.60 0.00 44.20 2.90
64 65 5.869888 AGGTCAACGTTTTATGACTCTCATC 59.130 40.000 15.60 1.25 44.20 2.92
65 66 5.220228 GGTCAACGTTTTATGACTCTCATCG 60.220 44.000 15.60 0.00 44.20 3.84
66 67 4.326278 TCAACGTTTTATGACTCTCATCGC 59.674 41.667 0.00 0.00 38.26 4.58
67 68 3.845178 ACGTTTTATGACTCTCATCGCA 58.155 40.909 0.00 0.00 38.26 5.10
68 69 4.242475 ACGTTTTATGACTCTCATCGCAA 58.758 39.130 0.00 0.00 38.26 4.85
69 70 4.091509 ACGTTTTATGACTCTCATCGCAAC 59.908 41.667 0.00 0.00 38.26 4.17
70 71 4.492570 CGTTTTATGACTCTCATCGCAACC 60.493 45.833 0.00 0.00 38.26 3.77
71 72 3.885724 TTATGACTCTCATCGCAACCA 57.114 42.857 0.00 0.00 38.26 3.67
72 73 2.768253 ATGACTCTCATCGCAACCAA 57.232 45.000 0.00 0.00 29.59 3.67
73 74 2.084610 TGACTCTCATCGCAACCAAG 57.915 50.000 0.00 0.00 0.00 3.61
74 75 1.618343 TGACTCTCATCGCAACCAAGA 59.382 47.619 0.00 0.00 0.00 3.02
75 76 2.037121 TGACTCTCATCGCAACCAAGAA 59.963 45.455 0.00 0.00 0.00 2.52
76 77 3.265791 GACTCTCATCGCAACCAAGAAT 58.734 45.455 0.00 0.00 0.00 2.40
77 78 4.081697 TGACTCTCATCGCAACCAAGAATA 60.082 41.667 0.00 0.00 0.00 1.75
78 79 4.437239 ACTCTCATCGCAACCAAGAATAG 58.563 43.478 0.00 0.00 0.00 1.73
79 80 3.198068 TCTCATCGCAACCAAGAATAGC 58.802 45.455 0.00 0.00 0.00 2.97
80 81 2.288666 TCATCGCAACCAAGAATAGCC 58.711 47.619 0.00 0.00 0.00 3.93
81 82 1.003545 CATCGCAACCAAGAATAGCCG 60.004 52.381 0.00 0.00 0.00 5.52
82 83 0.742990 TCGCAACCAAGAATAGCCGG 60.743 55.000 0.00 0.00 0.00 6.13
83 84 1.433471 GCAACCAAGAATAGCCGGC 59.567 57.895 21.89 21.89 0.00 6.13
84 85 1.312371 GCAACCAAGAATAGCCGGCA 61.312 55.000 31.54 15.56 0.00 5.69
85 86 0.451783 CAACCAAGAATAGCCGGCAC 59.548 55.000 31.54 16.56 0.00 5.01
103 104 5.156804 GGCACGGAATTATTACAACTCAG 57.843 43.478 0.00 0.00 0.00 3.35
104 105 4.634443 GGCACGGAATTATTACAACTCAGT 59.366 41.667 0.00 0.00 0.00 3.41
105 106 5.813672 GGCACGGAATTATTACAACTCAGTA 59.186 40.000 0.00 0.00 0.00 2.74
106 107 6.018994 GGCACGGAATTATTACAACTCAGTAG 60.019 42.308 0.00 0.00 0.00 2.57
107 108 6.755141 GCACGGAATTATTACAACTCAGTAGA 59.245 38.462 0.00 0.00 0.00 2.59
109 110 8.188799 CACGGAATTATTACAACTCAGTAGAGA 58.811 37.037 0.00 0.00 44.98 3.10
110 111 8.915036 ACGGAATTATTACAACTCAGTAGAGAT 58.085 33.333 0.00 0.00 44.98 2.75
118 119 9.944376 ATTACAACTCAGTAGAGATAAAAGCAA 57.056 29.630 0.00 0.00 44.98 3.91
119 120 9.772973 TTACAACTCAGTAGAGATAAAAGCAAA 57.227 29.630 0.00 0.00 44.98 3.68
120 121 8.316640 ACAACTCAGTAGAGATAAAAGCAAAG 57.683 34.615 0.00 0.00 44.98 2.77
121 122 6.976636 ACTCAGTAGAGATAAAAGCAAAGC 57.023 37.500 0.00 0.00 44.98 3.51
122 123 5.877564 ACTCAGTAGAGATAAAAGCAAAGCC 59.122 40.000 0.00 0.00 44.98 4.35
123 124 6.054860 TCAGTAGAGATAAAAGCAAAGCCT 57.945 37.500 0.00 0.00 0.00 4.58
124 125 6.476378 TCAGTAGAGATAAAAGCAAAGCCTT 58.524 36.000 0.00 0.00 0.00 4.35
125 126 6.372659 TCAGTAGAGATAAAAGCAAAGCCTTG 59.627 38.462 0.00 0.00 35.49 3.61
135 136 2.074547 CAAAGCCTTGCAACTGGATG 57.925 50.000 8.85 1.11 0.00 3.51
136 137 0.319405 AAAGCCTTGCAACTGGATGC 59.681 50.000 8.85 1.31 46.58 3.91
146 147 4.277515 GCAACTGGATGCAGGATATAGA 57.722 45.455 19.22 0.00 45.70 1.98
147 148 4.841422 GCAACTGGATGCAGGATATAGAT 58.159 43.478 19.22 0.00 45.70 1.98
148 149 4.874966 GCAACTGGATGCAGGATATAGATC 59.125 45.833 19.22 0.00 45.70 2.75
149 150 5.570236 GCAACTGGATGCAGGATATAGATCA 60.570 44.000 19.22 0.00 45.70 2.92
150 151 5.936187 ACTGGATGCAGGATATAGATCAG 57.064 43.478 19.22 0.00 33.27 2.90
151 152 4.715792 ACTGGATGCAGGATATAGATCAGG 59.284 45.833 19.22 0.00 33.27 3.86
152 153 4.951603 TGGATGCAGGATATAGATCAGGA 58.048 43.478 0.00 0.00 33.27 3.86
153 154 5.344566 TGGATGCAGGATATAGATCAGGAA 58.655 41.667 0.00 0.00 33.27 3.36
154 155 5.786975 TGGATGCAGGATATAGATCAGGAAA 59.213 40.000 0.00 0.00 33.27 3.13
155 156 6.273026 TGGATGCAGGATATAGATCAGGAAAA 59.727 38.462 0.00 0.00 33.27 2.29
156 157 6.597280 GGATGCAGGATATAGATCAGGAAAAC 59.403 42.308 0.00 0.00 33.27 2.43
157 158 6.499106 TGCAGGATATAGATCAGGAAAACA 57.501 37.500 0.00 0.00 33.27 2.83
158 159 6.899089 TGCAGGATATAGATCAGGAAAACAA 58.101 36.000 0.00 0.00 33.27 2.83
159 160 7.520798 TGCAGGATATAGATCAGGAAAACAAT 58.479 34.615 0.00 0.00 33.27 2.71
160 161 7.663081 TGCAGGATATAGATCAGGAAAACAATC 59.337 37.037 0.00 0.00 33.27 2.67
161 162 7.663081 GCAGGATATAGATCAGGAAAACAATCA 59.337 37.037 0.00 0.00 33.27 2.57
162 163 8.997323 CAGGATATAGATCAGGAAAACAATCAC 58.003 37.037 0.00 0.00 33.27 3.06
163 164 8.717717 AGGATATAGATCAGGAAAACAATCACA 58.282 33.333 0.00 0.00 33.27 3.58
164 165 9.342308 GGATATAGATCAGGAAAACAATCACAA 57.658 33.333 0.00 0.00 33.27 3.33
167 168 6.713762 AGATCAGGAAAACAATCACAAACA 57.286 33.333 0.00 0.00 0.00 2.83
168 169 6.742109 AGATCAGGAAAACAATCACAAACAG 58.258 36.000 0.00 0.00 0.00 3.16
169 170 6.547141 AGATCAGGAAAACAATCACAAACAGA 59.453 34.615 0.00 0.00 0.00 3.41
170 171 6.522625 TCAGGAAAACAATCACAAACAGAA 57.477 33.333 0.00 0.00 0.00 3.02
171 172 6.929625 TCAGGAAAACAATCACAAACAGAAA 58.070 32.000 0.00 0.00 0.00 2.52
172 173 7.035004 TCAGGAAAACAATCACAAACAGAAAG 58.965 34.615 0.00 0.00 0.00 2.62
173 174 6.813152 CAGGAAAACAATCACAAACAGAAAGT 59.187 34.615 0.00 0.00 0.00 2.66
174 175 7.973388 CAGGAAAACAATCACAAACAGAAAGTA 59.027 33.333 0.00 0.00 0.00 2.24
175 176 8.527810 AGGAAAACAATCACAAACAGAAAGTAA 58.472 29.630 0.00 0.00 0.00 2.24
176 177 9.145865 GGAAAACAATCACAAACAGAAAGTAAA 57.854 29.630 0.00 0.00 0.00 2.01
179 180 8.474006 AACAATCACAAACAGAAAGTAAAACC 57.526 30.769 0.00 0.00 0.00 3.27
180 181 6.750039 ACAATCACAAACAGAAAGTAAAACCG 59.250 34.615 0.00 0.00 0.00 4.44
181 182 6.687081 ATCACAAACAGAAAGTAAAACCGA 57.313 33.333 0.00 0.00 0.00 4.69
182 183 6.687081 TCACAAACAGAAAGTAAAACCGAT 57.313 33.333 0.00 0.00 0.00 4.18
183 184 6.721321 TCACAAACAGAAAGTAAAACCGATC 58.279 36.000 0.00 0.00 0.00 3.69
184 185 6.540914 TCACAAACAGAAAGTAAAACCGATCT 59.459 34.615 0.00 0.00 0.00 2.75
185 186 7.711772 TCACAAACAGAAAGTAAAACCGATCTA 59.288 33.333 0.00 0.00 0.00 1.98
186 187 8.339714 CACAAACAGAAAGTAAAACCGATCTAA 58.660 33.333 0.00 0.00 0.00 2.10
187 188 8.895737 ACAAACAGAAAGTAAAACCGATCTAAA 58.104 29.630 0.00 0.00 0.00 1.85
188 189 9.724839 CAAACAGAAAGTAAAACCGATCTAAAA 57.275 29.630 0.00 0.00 0.00 1.52
191 192 9.503399 ACAGAAAGTAAAACCGATCTAAAATCT 57.497 29.630 0.00 0.00 0.00 2.40
200 201 7.745620 AACCGATCTAAAATCTTTTGAGTGT 57.254 32.000 0.00 0.00 0.00 3.55
201 202 7.133891 ACCGATCTAAAATCTTTTGAGTGTG 57.866 36.000 0.00 0.00 0.00 3.82
202 203 6.710744 ACCGATCTAAAATCTTTTGAGTGTGT 59.289 34.615 0.00 0.00 0.00 3.72
203 204 7.017645 CCGATCTAAAATCTTTTGAGTGTGTG 58.982 38.462 0.00 0.00 0.00 3.82
204 205 7.307989 CCGATCTAAAATCTTTTGAGTGTGTGT 60.308 37.037 0.00 0.00 0.00 3.72
205 206 8.070171 CGATCTAAAATCTTTTGAGTGTGTGTT 58.930 33.333 0.00 0.00 0.00 3.32
206 207 9.736023 GATCTAAAATCTTTTGAGTGTGTGTTT 57.264 29.630 0.00 0.00 0.00 2.83
207 208 9.736023 ATCTAAAATCTTTTGAGTGTGTGTTTC 57.264 29.630 0.00 0.00 0.00 2.78
208 209 8.735315 TCTAAAATCTTTTGAGTGTGTGTTTCA 58.265 29.630 0.00 0.00 0.00 2.69
209 210 9.352784 CTAAAATCTTTTGAGTGTGTGTTTCAA 57.647 29.630 0.00 0.00 0.00 2.69
210 211 8.600449 AAAATCTTTTGAGTGTGTGTTTCAAA 57.400 26.923 0.00 0.00 38.61 2.69
211 212 7.816945 AATCTTTTGAGTGTGTGTTTCAAAG 57.183 32.000 0.08 0.00 40.63 2.77
212 213 6.325919 TCTTTTGAGTGTGTGTTTCAAAGT 57.674 33.333 0.08 0.00 40.63 2.66
213 214 6.148948 TCTTTTGAGTGTGTGTTTCAAAGTG 58.851 36.000 0.08 0.00 40.63 3.16
214 215 5.446143 TTTGAGTGTGTGTTTCAAAGTGT 57.554 34.783 0.00 0.00 36.28 3.55
215 216 6.561737 TTTGAGTGTGTGTTTCAAAGTGTA 57.438 33.333 0.00 0.00 36.28 2.90
216 217 6.751514 TTGAGTGTGTGTTTCAAAGTGTAT 57.248 33.333 0.00 0.00 0.00 2.29
217 218 7.851387 TTGAGTGTGTGTTTCAAAGTGTATA 57.149 32.000 0.00 0.00 0.00 1.47
218 219 8.445275 TTGAGTGTGTGTTTCAAAGTGTATAT 57.555 30.769 0.00 0.00 0.00 0.86
219 220 8.445275 TGAGTGTGTGTTTCAAAGTGTATATT 57.555 30.769 0.00 0.00 0.00 1.28
220 221 9.549078 TGAGTGTGTGTTTCAAAGTGTATATTA 57.451 29.630 0.00 0.00 0.00 0.98
251 252 9.959749 TTTTAAATAGCGGGCTATGAAAAATAG 57.040 29.630 20.37 0.00 39.03 1.73
252 253 5.629079 AATAGCGGGCTATGAAAAATAGC 57.371 39.130 13.53 8.52 44.56 2.97
253 254 1.873591 AGCGGGCTATGAAAAATAGCG 59.126 47.619 10.37 0.97 45.83 4.26
254 255 1.069227 GCGGGCTATGAAAAATAGCGG 60.069 52.381 10.37 6.88 45.83 5.52
255 256 1.069227 CGGGCTATGAAAAATAGCGGC 60.069 52.381 10.37 0.00 45.83 6.53
256 257 1.069227 GGGCTATGAAAAATAGCGGCG 60.069 52.381 0.51 0.51 45.83 6.46
257 258 1.069227 GGCTATGAAAAATAGCGGCGG 60.069 52.381 9.78 0.00 45.83 6.13
258 259 1.871039 GCTATGAAAAATAGCGGCGGA 59.129 47.619 9.78 0.00 37.79 5.54
259 260 2.349532 GCTATGAAAAATAGCGGCGGAC 60.350 50.000 9.78 0.00 37.79 4.79
260 261 1.021968 ATGAAAAATAGCGGCGGACC 58.978 50.000 9.78 0.00 0.00 4.46
261 262 0.035820 TGAAAAATAGCGGCGGACCT 60.036 50.000 9.78 0.00 0.00 3.85
262 263 0.656259 GAAAAATAGCGGCGGACCTC 59.344 55.000 9.78 0.00 0.00 3.85
263 264 0.035820 AAAAATAGCGGCGGACCTCA 60.036 50.000 9.78 0.00 0.00 3.86
264 265 0.035820 AAAATAGCGGCGGACCTCAA 60.036 50.000 9.78 0.00 0.00 3.02
265 266 0.035820 AAATAGCGGCGGACCTCAAA 60.036 50.000 9.78 0.00 0.00 2.69
266 267 0.035820 AATAGCGGCGGACCTCAAAA 60.036 50.000 9.78 0.00 0.00 2.44
267 268 0.180406 ATAGCGGCGGACCTCAAAAT 59.820 50.000 9.78 0.00 0.00 1.82
268 269 0.461339 TAGCGGCGGACCTCAAAATC 60.461 55.000 9.78 0.00 0.00 2.17
269 270 2.038269 GCGGCGGACCTCAAAATCA 61.038 57.895 9.78 0.00 0.00 2.57
270 271 1.982073 GCGGCGGACCTCAAAATCAG 61.982 60.000 9.78 0.00 0.00 2.90
271 272 1.803289 GGCGGACCTCAAAATCAGC 59.197 57.895 0.00 0.00 35.57 4.26
272 273 0.678048 GGCGGACCTCAAAATCAGCT 60.678 55.000 0.00 0.00 36.44 4.24
273 274 1.406887 GGCGGACCTCAAAATCAGCTA 60.407 52.381 0.00 0.00 36.44 3.32
274 275 2.565841 GCGGACCTCAAAATCAGCTAT 58.434 47.619 0.00 0.00 33.80 2.97
275 276 3.494398 GGCGGACCTCAAAATCAGCTATA 60.494 47.826 0.00 0.00 36.44 1.31
276 277 3.743396 GCGGACCTCAAAATCAGCTATAG 59.257 47.826 0.00 0.00 33.80 1.31
277 278 3.743396 CGGACCTCAAAATCAGCTATAGC 59.257 47.826 17.33 17.33 42.49 2.97
278 279 4.708177 GGACCTCAAAATCAGCTATAGCA 58.292 43.478 26.07 7.38 45.16 3.49
279 280 4.754114 GGACCTCAAAATCAGCTATAGCAG 59.246 45.833 26.07 18.60 45.16 4.24
293 294 2.431601 GCAGCGGGCTATAGCGAG 60.432 66.667 18.30 14.88 43.26 5.03
294 295 2.431601 CAGCGGGCTATAGCGAGC 60.432 66.667 25.99 25.99 43.26 5.03
295 296 2.598985 AGCGGGCTATAGCGAGCT 60.599 61.111 28.67 28.67 44.98 4.09
296 297 1.303398 AGCGGGCTATAGCGAGCTA 60.303 57.895 31.25 7.31 46.78 3.32
297 298 0.681564 AGCGGGCTATAGCGAGCTAT 60.682 55.000 31.25 19.78 46.78 2.97
298 299 1.022735 GCGGGCTATAGCGAGCTATA 58.977 55.000 26.02 19.88 42.43 1.31
304 305 2.710760 CTATAGCGAGCTATAGCGTGC 58.289 52.381 28.46 26.86 46.26 5.34
305 306 2.353269 CTATAGCGAGCTATAGCGTGCT 59.647 50.000 33.83 33.83 46.26 4.40
313 314 1.523095 GCTATAGCGTGCTACTTGTGC 59.477 52.381 9.40 1.44 0.00 4.57
314 315 2.809446 CTATAGCGTGCTACTTGTGCA 58.191 47.619 3.26 0.00 38.19 4.57
315 316 2.315925 ATAGCGTGCTACTTGTGCAT 57.684 45.000 3.26 0.00 42.69 3.96
316 317 1.358877 TAGCGTGCTACTTGTGCATG 58.641 50.000 0.00 0.00 46.68 4.06
317 318 0.320683 AGCGTGCTACTTGTGCATGA 60.321 50.000 11.46 0.00 46.85 3.07
318 319 0.095935 GCGTGCTACTTGTGCATGAG 59.904 55.000 11.46 0.00 46.85 2.90
319 320 1.713597 CGTGCTACTTGTGCATGAGA 58.286 50.000 0.00 0.00 46.85 3.27
320 321 1.391485 CGTGCTACTTGTGCATGAGAC 59.609 52.381 0.00 0.00 46.85 3.36
321 322 1.734465 GTGCTACTTGTGCATGAGACC 59.266 52.381 0.00 0.00 42.69 3.85
322 323 1.347378 TGCTACTTGTGCATGAGACCA 59.653 47.619 0.00 0.00 35.31 4.02
323 324 2.026915 TGCTACTTGTGCATGAGACCAT 60.027 45.455 0.00 0.00 35.31 3.55
324 325 3.012518 GCTACTTGTGCATGAGACCATT 58.987 45.455 0.00 0.00 0.00 3.16
325 326 3.441572 GCTACTTGTGCATGAGACCATTT 59.558 43.478 0.00 0.00 0.00 2.32
326 327 4.635765 GCTACTTGTGCATGAGACCATTTA 59.364 41.667 0.00 0.00 0.00 1.40
327 328 5.220739 GCTACTTGTGCATGAGACCATTTAG 60.221 44.000 0.00 0.00 0.00 1.85
328 329 3.441572 ACTTGTGCATGAGACCATTTAGC 59.558 43.478 0.00 0.00 0.00 3.09
329 330 3.070476 TGTGCATGAGACCATTTAGCA 57.930 42.857 0.00 0.00 30.01 3.49
330 331 3.011818 TGTGCATGAGACCATTTAGCAG 58.988 45.455 0.00 0.00 32.24 4.24
331 332 2.019249 TGCATGAGACCATTTAGCAGC 58.981 47.619 0.00 0.00 29.43 5.25
332 333 2.019249 GCATGAGACCATTTAGCAGCA 58.981 47.619 0.00 0.00 0.00 4.41
333 334 2.621998 GCATGAGACCATTTAGCAGCAT 59.378 45.455 0.00 0.00 0.00 3.79
334 335 3.304525 GCATGAGACCATTTAGCAGCATC 60.305 47.826 0.00 0.00 0.00 3.91
335 336 3.920231 TGAGACCATTTAGCAGCATCT 57.080 42.857 0.00 0.00 0.00 2.90
336 337 4.226427 TGAGACCATTTAGCAGCATCTT 57.774 40.909 0.00 0.00 0.00 2.40
337 338 3.943381 TGAGACCATTTAGCAGCATCTTG 59.057 43.478 0.00 0.00 0.00 3.02
338 339 2.686915 AGACCATTTAGCAGCATCTTGC 59.313 45.455 0.00 0.00 45.46 4.01
353 354 5.456265 GCATCTTGCTAAAAAGGCTATAGC 58.544 41.667 16.78 16.78 40.96 2.97
354 355 5.683859 CATCTTGCTAAAAAGGCTATAGCG 58.316 41.667 18.30 4.04 43.86 4.26
355 356 4.127171 TCTTGCTAAAAAGGCTATAGCGG 58.873 43.478 18.30 13.49 43.86 5.52
356 357 2.846193 TGCTAAAAAGGCTATAGCGGG 58.154 47.619 18.30 4.63 43.86 6.13
357 358 1.535896 GCTAAAAAGGCTATAGCGGGC 59.464 52.381 18.30 5.04 43.26 6.13
358 359 2.810767 GCTAAAAAGGCTATAGCGGGCT 60.811 50.000 18.30 7.37 43.26 5.19
359 360 3.556423 GCTAAAAAGGCTATAGCGGGCTA 60.556 47.826 18.30 2.42 43.26 3.93
360 361 3.790089 AAAAAGGCTATAGCGGGCTAT 57.210 42.857 18.30 16.61 43.26 2.97
361 362 4.903045 AAAAAGGCTATAGCGGGCTATA 57.097 40.909 18.30 17.02 43.26 1.31
367 368 3.341857 CTATAGCGGGCTATAGCGAAG 57.658 52.381 26.16 12.52 46.26 3.79
368 369 0.173708 ATAGCGGGCTATAGCGAAGC 59.826 55.000 22.13 22.13 42.31 3.86
382 383 2.656560 CGAAGCTATAGCCGGCTATT 57.343 50.000 44.65 31.63 43.38 1.73
383 384 2.960819 CGAAGCTATAGCCGGCTATTT 58.039 47.619 44.65 34.49 43.38 1.40
384 385 4.106029 CGAAGCTATAGCCGGCTATTTA 57.894 45.455 44.65 30.51 43.38 1.40
385 386 4.491676 CGAAGCTATAGCCGGCTATTTAA 58.508 43.478 44.65 29.85 43.38 1.52
386 387 4.927425 CGAAGCTATAGCCGGCTATTTAAA 59.073 41.667 44.65 29.52 43.38 1.52
387 388 5.407387 CGAAGCTATAGCCGGCTATTTAAAA 59.593 40.000 44.65 29.19 43.38 1.52
388 389 6.555812 AAGCTATAGCCGGCTATTTAAAAC 57.444 37.500 44.65 28.54 43.38 2.43
389 390 5.866207 AGCTATAGCCGGCTATTTAAAACT 58.134 37.500 44.65 29.88 43.38 2.66
390 391 7.001099 AGCTATAGCCGGCTATTTAAAACTA 57.999 36.000 44.65 27.23 43.38 2.24
391 392 7.621796 AGCTATAGCCGGCTATTTAAAACTAT 58.378 34.615 44.65 26.21 43.38 2.12
392 393 7.549488 AGCTATAGCCGGCTATTTAAAACTATG 59.451 37.037 44.65 24.19 43.38 2.23
393 394 7.548075 GCTATAGCCGGCTATTTAAAACTATGA 59.452 37.037 44.65 25.48 39.65 2.15
394 395 9.601217 CTATAGCCGGCTATTTAAAACTATGAT 57.399 33.333 44.65 25.13 39.65 2.45
395 396 8.863872 ATAGCCGGCTATTTAAAACTATGATT 57.136 30.769 37.79 15.38 35.92 2.57
423 424 8.437360 TGCTTCGTCATATATGAACAAAATCT 57.563 30.769 16.97 0.00 38.75 2.40
452 453 9.630098 AATCATTAATCTCACAACACATTCAAC 57.370 29.630 0.00 0.00 0.00 3.18
457 458 3.038017 CTCACAACACATTCAACGCTTG 58.962 45.455 0.00 0.00 0.00 4.01
468 471 0.664166 CAACGCTTGGAATGCACACC 60.664 55.000 0.00 0.00 36.70 4.16
505 508 3.306849 GGTAGAAAAACCGCTCTCCTTCT 60.307 47.826 0.00 0.00 0.00 2.85
557 561 2.226262 CGCAAGTAACCATTGTCACG 57.774 50.000 0.00 0.00 0.00 4.35
558 562 1.724654 CGCAAGTAACCATTGTCACGC 60.725 52.381 0.00 0.00 0.00 5.34
559 563 1.535462 GCAAGTAACCATTGTCACGCT 59.465 47.619 0.00 0.00 0.00 5.07
560 564 2.031157 GCAAGTAACCATTGTCACGCTT 60.031 45.455 0.00 0.00 0.00 4.68
561 565 3.554524 CAAGTAACCATTGTCACGCTTG 58.445 45.455 0.00 0.00 0.00 4.01
565 569 0.961019 ACCATTGTCACGCTTGCATT 59.039 45.000 0.00 0.00 0.00 3.56
585 589 2.156917 TCATGCAAGGTTCTGCTTCAG 58.843 47.619 0.00 0.00 43.07 3.02
586 590 0.886563 ATGCAAGGTTCTGCTTCAGC 59.113 50.000 0.00 0.00 43.07 4.26
587 591 1.208614 GCAAGGTTCTGCTTCAGCG 59.791 57.895 0.00 0.00 45.83 5.18
596 600 1.795768 CTGCTTCAGCGGTCACTTTA 58.204 50.000 0.00 0.00 45.83 1.85
643 647 2.436173 CCTGGGGAGACATCTAGGAAAC 59.564 54.545 0.00 0.00 0.00 2.78
683 688 1.535028 CACACTTATGCACAAGCCGAA 59.465 47.619 4.21 0.00 41.13 4.30
770 777 4.419522 AATTAACGTGCTGGCTTAACTG 57.580 40.909 0.00 0.00 0.00 3.16
899 910 1.737236 TGGACTTTGGAATCATTCGCG 59.263 47.619 0.00 0.00 0.00 5.87
900 911 1.737793 GGACTTTGGAATCATTCGCGT 59.262 47.619 5.77 0.00 0.00 6.01
901 912 2.933906 GGACTTTGGAATCATTCGCGTA 59.066 45.455 5.77 0.00 0.00 4.42
902 913 3.242316 GGACTTTGGAATCATTCGCGTAC 60.242 47.826 5.77 0.00 0.00 3.67
941 952 7.041644 GCCTATATAACGGCAACTTGAACATTA 60.042 37.037 7.89 0.00 45.59 1.90
980 992 1.447140 CCGCCCGAATCGAGAACAA 60.447 57.895 3.36 0.00 0.00 2.83
989 1001 5.268544 CCGAATCGAGAACAATACGTAGAA 58.731 41.667 3.36 0.00 0.00 2.10
990 1002 5.395778 CCGAATCGAGAACAATACGTAGAAG 59.604 44.000 3.36 0.00 0.00 2.85
1039 1057 4.373116 CGTCCACGGTGACCCAGG 62.373 72.222 10.28 0.00 35.37 4.45
1203 1221 0.324943 CATTGTCCCCGTCCTTCACT 59.675 55.000 0.00 0.00 0.00 3.41
1218 1236 2.264005 TCACTAACCACGGCAAATGT 57.736 45.000 0.00 0.00 0.00 2.71
1272 1290 3.753434 CTGGTCGCTGTCCTCGCT 61.753 66.667 0.00 0.00 0.00 4.93
1718 1737 5.828299 TTCCCACAAGTGTAAGAACAAAG 57.172 39.130 0.00 0.00 37.36 2.77
1791 1810 5.927954 AAATTTTGTGCTGGCTTGTAATG 57.072 34.783 0.00 0.00 0.00 1.90
1801 1820 2.024414 GGCTTGTAATGTGATGGGGTC 58.976 52.381 0.00 0.00 0.00 4.46
1847 1866 6.469410 TGTCCTTGTATTGTAGGGTTTACTG 58.531 40.000 0.00 0.00 32.20 2.74
1889 1913 1.069432 GTGTGTGCTGATTGCTGAGTG 60.069 52.381 0.00 0.00 43.37 3.51
1991 2053 6.480524 TCCGTTATGTCAAAGTGATGAAAG 57.519 37.500 0.00 0.00 0.00 2.62
2083 2152 6.421202 GCTTAACTGTATATCACCGGAGAAAG 59.579 42.308 9.46 4.05 0.00 2.62
2331 2412 9.549078 AAGTTTGTGAGGTTTGACTTTTTAAAA 57.451 25.926 0.00 0.00 0.00 1.52
2377 2458 3.181484 TGCAACGGAGTGCGTATATACTT 60.181 43.478 11.01 0.00 45.00 2.24
2490 5602 0.918983 CACAGCCCTCCATTCCCTTA 59.081 55.000 0.00 0.00 0.00 2.69
2544 5657 9.445878 TGAAAGATGATCATGAGCTATAAATCC 57.554 33.333 14.30 0.00 0.00 3.01
2554 5667 3.484407 AGCTATAAATCCAGCTTGCCTG 58.516 45.455 0.00 0.00 45.80 4.85
2569 5682 1.671901 GCCTGAAGAGGTCTCTCCCG 61.672 65.000 0.51 0.00 42.15 5.14
2591 5704 4.258860 CGTTTTGCGAAACAACACTTCTTC 60.259 41.667 25.52 0.00 44.25 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.919772 ATAAAAGTTGGGTCAGGGGG 57.080 50.000 0.00 0.00 0.00 5.40
1 2 5.186992 CCTTTAATAAAAGTTGGGTCAGGGG 59.813 44.000 0.00 0.00 40.51 4.79
2 3 5.337250 GCCTTTAATAAAAGTTGGGTCAGGG 60.337 44.000 0.00 0.00 40.51 4.45
3 4 5.245075 TGCCTTTAATAAAAGTTGGGTCAGG 59.755 40.000 0.00 0.00 40.51 3.86
4 5 6.339587 TGCCTTTAATAAAAGTTGGGTCAG 57.660 37.500 0.00 0.00 40.51 3.51
5 6 6.239458 CCTTGCCTTTAATAAAAGTTGGGTCA 60.239 38.462 0.00 0.00 40.51 4.02
6 7 6.163476 CCTTGCCTTTAATAAAAGTTGGGTC 58.837 40.000 0.00 0.00 40.51 4.46
7 8 5.512404 GCCTTGCCTTTAATAAAAGTTGGGT 60.512 40.000 0.00 0.00 40.51 4.51
8 9 4.935205 GCCTTGCCTTTAATAAAAGTTGGG 59.065 41.667 0.00 0.00 40.51 4.12
9 10 5.546526 TGCCTTGCCTTTAATAAAAGTTGG 58.453 37.500 0.00 0.00 40.51 3.77
10 11 7.011857 TGTTTGCCTTGCCTTTAATAAAAGTTG 59.988 33.333 0.00 0.00 40.51 3.16
11 12 7.051000 TGTTTGCCTTGCCTTTAATAAAAGTT 58.949 30.769 0.00 0.00 40.51 2.66
12 13 6.587273 TGTTTGCCTTGCCTTTAATAAAAGT 58.413 32.000 0.00 0.00 40.51 2.66
13 14 7.148423 GGATGTTTGCCTTGCCTTTAATAAAAG 60.148 37.037 0.00 0.00 41.57 2.27
14 15 6.652900 GGATGTTTGCCTTGCCTTTAATAAAA 59.347 34.615 0.00 0.00 0.00 1.52
15 16 6.169800 GGATGTTTGCCTTGCCTTTAATAAA 58.830 36.000 0.00 0.00 0.00 1.40
16 17 5.247110 TGGATGTTTGCCTTGCCTTTAATAA 59.753 36.000 0.00 0.00 0.00 1.40
17 18 4.774726 TGGATGTTTGCCTTGCCTTTAATA 59.225 37.500 0.00 0.00 0.00 0.98
18 19 3.582208 TGGATGTTTGCCTTGCCTTTAAT 59.418 39.130 0.00 0.00 0.00 1.40
19 20 2.968574 TGGATGTTTGCCTTGCCTTTAA 59.031 40.909 0.00 0.00 0.00 1.52
20 21 2.562298 CTGGATGTTTGCCTTGCCTTTA 59.438 45.455 0.00 0.00 0.00 1.85
21 22 1.345415 CTGGATGTTTGCCTTGCCTTT 59.655 47.619 0.00 0.00 0.00 3.11
22 23 0.971386 CTGGATGTTTGCCTTGCCTT 59.029 50.000 0.00 0.00 0.00 4.35
23 24 0.901580 CCTGGATGTTTGCCTTGCCT 60.902 55.000 0.00 0.00 0.00 4.75
24 25 1.187567 ACCTGGATGTTTGCCTTGCC 61.188 55.000 0.00 0.00 0.00 4.52
25 26 0.244721 GACCTGGATGTTTGCCTTGC 59.755 55.000 0.00 0.00 0.00 4.01
26 27 1.619654 TGACCTGGATGTTTGCCTTG 58.380 50.000 0.00 0.00 0.00 3.61
27 28 1.963515 GTTGACCTGGATGTTTGCCTT 59.036 47.619 0.00 0.00 0.00 4.35
28 29 1.620822 GTTGACCTGGATGTTTGCCT 58.379 50.000 0.00 0.00 0.00 4.75
29 30 0.240945 CGTTGACCTGGATGTTTGCC 59.759 55.000 0.00 0.00 0.00 4.52
30 31 0.951558 ACGTTGACCTGGATGTTTGC 59.048 50.000 0.00 0.00 0.00 3.68
31 32 3.708563 AAACGTTGACCTGGATGTTTG 57.291 42.857 0.00 0.00 34.62 2.93
32 33 5.533154 TCATAAAACGTTGACCTGGATGTTT 59.467 36.000 0.00 0.00 36.76 2.83
33 34 5.048991 GTCATAAAACGTTGACCTGGATGTT 60.049 40.000 0.00 0.00 36.98 2.71
34 35 4.454504 GTCATAAAACGTTGACCTGGATGT 59.545 41.667 0.00 0.00 36.98 3.06
35 36 4.695455 AGTCATAAAACGTTGACCTGGATG 59.305 41.667 13.16 5.17 42.56 3.51
36 37 4.906618 AGTCATAAAACGTTGACCTGGAT 58.093 39.130 13.16 0.00 42.56 3.41
37 38 4.039973 AGAGTCATAAAACGTTGACCTGGA 59.960 41.667 13.16 0.02 42.56 3.86
38 39 4.315803 AGAGTCATAAAACGTTGACCTGG 58.684 43.478 13.16 0.00 42.56 4.45
39 40 4.988540 TGAGAGTCATAAAACGTTGACCTG 59.011 41.667 13.16 4.68 42.56 4.00
40 41 5.209818 TGAGAGTCATAAAACGTTGACCT 57.790 39.130 13.16 10.37 42.56 3.85
41 42 5.220228 CGATGAGAGTCATAAAACGTTGACC 60.220 44.000 13.16 6.51 42.56 4.02
42 43 5.721510 GCGATGAGAGTCATAAAACGTTGAC 60.722 44.000 0.00 5.70 37.20 3.18
43 44 4.326278 GCGATGAGAGTCATAAAACGTTGA 59.674 41.667 0.00 0.00 37.20 3.18
44 45 4.091365 TGCGATGAGAGTCATAAAACGTTG 59.909 41.667 0.00 0.00 37.20 4.10
45 46 4.242475 TGCGATGAGAGTCATAAAACGTT 58.758 39.130 0.00 0.00 37.20 3.99
46 47 3.845178 TGCGATGAGAGTCATAAAACGT 58.155 40.909 0.00 0.00 37.20 3.99
47 48 4.492570 GGTTGCGATGAGAGTCATAAAACG 60.493 45.833 0.00 0.00 37.20 3.60
48 49 4.391830 TGGTTGCGATGAGAGTCATAAAAC 59.608 41.667 0.00 0.00 37.20 2.43
49 50 4.574892 TGGTTGCGATGAGAGTCATAAAA 58.425 39.130 0.00 0.00 37.20 1.52
50 51 4.200838 TGGTTGCGATGAGAGTCATAAA 57.799 40.909 0.00 0.00 37.20 1.40
51 52 3.885724 TGGTTGCGATGAGAGTCATAA 57.114 42.857 0.00 0.00 37.20 1.90
52 53 3.447229 TCTTGGTTGCGATGAGAGTCATA 59.553 43.478 0.00 0.00 37.20 2.15
53 54 2.234661 TCTTGGTTGCGATGAGAGTCAT 59.765 45.455 0.00 0.00 40.34 3.06
54 55 1.618343 TCTTGGTTGCGATGAGAGTCA 59.382 47.619 0.00 0.00 0.00 3.41
55 56 2.370281 TCTTGGTTGCGATGAGAGTC 57.630 50.000 0.00 0.00 0.00 3.36
56 57 2.839486 TTCTTGGTTGCGATGAGAGT 57.161 45.000 0.00 0.00 0.00 3.24
57 58 3.247173 GCTATTCTTGGTTGCGATGAGAG 59.753 47.826 0.00 0.00 0.00 3.20
58 59 3.198068 GCTATTCTTGGTTGCGATGAGA 58.802 45.455 0.00 0.00 0.00 3.27
59 60 2.289002 GGCTATTCTTGGTTGCGATGAG 59.711 50.000 0.00 0.00 0.00 2.90
60 61 2.288666 GGCTATTCTTGGTTGCGATGA 58.711 47.619 0.00 0.00 0.00 2.92
61 62 1.003545 CGGCTATTCTTGGTTGCGATG 60.004 52.381 0.00 0.00 0.00 3.84
62 63 1.299541 CGGCTATTCTTGGTTGCGAT 58.700 50.000 0.00 0.00 0.00 4.58
63 64 0.742990 CCGGCTATTCTTGGTTGCGA 60.743 55.000 0.00 0.00 0.00 5.10
64 65 1.721487 CCGGCTATTCTTGGTTGCG 59.279 57.895 0.00 0.00 0.00 4.85
65 66 1.312371 TGCCGGCTATTCTTGGTTGC 61.312 55.000 29.70 0.00 0.00 4.17
66 67 0.451783 GTGCCGGCTATTCTTGGTTG 59.548 55.000 29.70 0.00 0.00 3.77
67 68 1.024579 CGTGCCGGCTATTCTTGGTT 61.025 55.000 29.70 0.00 0.00 3.67
68 69 1.449601 CGTGCCGGCTATTCTTGGT 60.450 57.895 29.70 0.00 0.00 3.67
69 70 2.180204 CCGTGCCGGCTATTCTTGG 61.180 63.158 29.70 14.17 41.17 3.61
70 71 3.409856 CCGTGCCGGCTATTCTTG 58.590 61.111 29.70 8.92 41.17 3.02
80 81 3.619483 TGAGTTGTAATAATTCCGTGCCG 59.381 43.478 0.00 0.00 0.00 5.69
81 82 4.634443 ACTGAGTTGTAATAATTCCGTGCC 59.366 41.667 0.00 0.00 0.00 5.01
82 83 5.796350 ACTGAGTTGTAATAATTCCGTGC 57.204 39.130 0.00 0.00 0.00 5.34
83 84 8.188799 TCTCTACTGAGTTGTAATAATTCCGTG 58.811 37.037 0.00 0.00 40.98 4.94
84 85 8.289939 TCTCTACTGAGTTGTAATAATTCCGT 57.710 34.615 0.00 0.00 40.98 4.69
92 93 9.944376 TTGCTTTTATCTCTACTGAGTTGTAAT 57.056 29.630 0.00 0.00 40.98 1.89
93 94 9.772973 TTTGCTTTTATCTCTACTGAGTTGTAA 57.227 29.630 0.00 0.00 40.98 2.41
94 95 9.424319 CTTTGCTTTTATCTCTACTGAGTTGTA 57.576 33.333 0.00 0.00 40.98 2.41
95 96 7.095017 GCTTTGCTTTTATCTCTACTGAGTTGT 60.095 37.037 0.00 0.00 40.98 3.32
96 97 7.239972 GCTTTGCTTTTATCTCTACTGAGTTG 58.760 38.462 0.00 0.00 40.98 3.16
97 98 6.372937 GGCTTTGCTTTTATCTCTACTGAGTT 59.627 38.462 0.00 0.00 40.98 3.01
98 99 5.877564 GGCTTTGCTTTTATCTCTACTGAGT 59.122 40.000 0.00 0.00 40.98 3.41
99 100 6.112058 AGGCTTTGCTTTTATCTCTACTGAG 58.888 40.000 0.00 0.00 41.51 3.35
100 101 6.054860 AGGCTTTGCTTTTATCTCTACTGA 57.945 37.500 0.00 0.00 0.00 3.41
101 102 6.549952 CAAGGCTTTGCTTTTATCTCTACTG 58.450 40.000 0.00 0.00 0.00 2.74
102 103 6.749923 CAAGGCTTTGCTTTTATCTCTACT 57.250 37.500 0.00 0.00 0.00 2.57
116 117 1.938016 GCATCCAGTTGCAAGGCTTTG 60.938 52.381 0.00 3.80 42.31 2.77
117 118 0.319405 GCATCCAGTTGCAAGGCTTT 59.681 50.000 0.00 0.00 42.31 3.51
118 119 1.969862 GCATCCAGTTGCAAGGCTT 59.030 52.632 0.00 0.00 42.31 4.35
119 120 3.690745 GCATCCAGTTGCAAGGCT 58.309 55.556 0.00 0.00 42.31 4.58
125 126 4.277515 TCTATATCCTGCATCCAGTTGC 57.722 45.455 0.00 0.00 43.07 4.17
126 127 6.046290 TGATCTATATCCTGCATCCAGTTG 57.954 41.667 0.00 0.00 37.38 3.16
127 128 5.189342 CCTGATCTATATCCTGCATCCAGTT 59.811 44.000 0.00 0.00 37.38 3.16
128 129 4.715792 CCTGATCTATATCCTGCATCCAGT 59.284 45.833 0.00 0.00 37.38 4.00
129 130 4.961099 TCCTGATCTATATCCTGCATCCAG 59.039 45.833 0.00 0.00 38.85 3.86
130 131 4.951603 TCCTGATCTATATCCTGCATCCA 58.048 43.478 0.00 0.00 0.00 3.41
131 132 5.946942 TTCCTGATCTATATCCTGCATCC 57.053 43.478 0.00 0.00 0.00 3.51
132 133 7.164122 TGTTTTCCTGATCTATATCCTGCATC 58.836 38.462 0.00 0.00 0.00 3.91
133 134 7.083062 TGTTTTCCTGATCTATATCCTGCAT 57.917 36.000 0.00 0.00 0.00 3.96
134 135 6.499106 TGTTTTCCTGATCTATATCCTGCA 57.501 37.500 0.00 0.00 0.00 4.41
135 136 7.663081 TGATTGTTTTCCTGATCTATATCCTGC 59.337 37.037 0.00 0.00 0.00 4.85
136 137 8.997323 GTGATTGTTTTCCTGATCTATATCCTG 58.003 37.037 0.00 0.00 0.00 3.86
137 138 8.717717 TGTGATTGTTTTCCTGATCTATATCCT 58.282 33.333 0.00 0.00 0.00 3.24
138 139 8.908786 TGTGATTGTTTTCCTGATCTATATCC 57.091 34.615 0.00 0.00 0.00 2.59
141 142 9.513906 TGTTTGTGATTGTTTTCCTGATCTATA 57.486 29.630 0.00 0.00 0.00 1.31
142 143 8.408043 TGTTTGTGATTGTTTTCCTGATCTAT 57.592 30.769 0.00 0.00 0.00 1.98
143 144 7.719193 TCTGTTTGTGATTGTTTTCCTGATCTA 59.281 33.333 0.00 0.00 0.00 1.98
144 145 6.547141 TCTGTTTGTGATTGTTTTCCTGATCT 59.453 34.615 0.00 0.00 0.00 2.75
145 146 6.738114 TCTGTTTGTGATTGTTTTCCTGATC 58.262 36.000 0.00 0.00 0.00 2.92
146 147 6.713762 TCTGTTTGTGATTGTTTTCCTGAT 57.286 33.333 0.00 0.00 0.00 2.90
147 148 6.522625 TTCTGTTTGTGATTGTTTTCCTGA 57.477 33.333 0.00 0.00 0.00 3.86
148 149 6.813152 ACTTTCTGTTTGTGATTGTTTTCCTG 59.187 34.615 0.00 0.00 0.00 3.86
149 150 6.935167 ACTTTCTGTTTGTGATTGTTTTCCT 58.065 32.000 0.00 0.00 0.00 3.36
150 151 8.696410 TTACTTTCTGTTTGTGATTGTTTTCC 57.304 30.769 0.00 0.00 0.00 3.13
153 154 8.931775 GGTTTTACTTTCTGTTTGTGATTGTTT 58.068 29.630 0.00 0.00 0.00 2.83
154 155 7.274686 CGGTTTTACTTTCTGTTTGTGATTGTT 59.725 33.333 0.00 0.00 0.00 2.83
155 156 6.750039 CGGTTTTACTTTCTGTTTGTGATTGT 59.250 34.615 0.00 0.00 0.00 2.71
156 157 6.970043 TCGGTTTTACTTTCTGTTTGTGATTG 59.030 34.615 0.00 0.00 0.00 2.67
157 158 7.090953 TCGGTTTTACTTTCTGTTTGTGATT 57.909 32.000 0.00 0.00 0.00 2.57
158 159 6.687081 TCGGTTTTACTTTCTGTTTGTGAT 57.313 33.333 0.00 0.00 0.00 3.06
159 160 6.540914 AGATCGGTTTTACTTTCTGTTTGTGA 59.459 34.615 0.00 0.00 0.00 3.58
160 161 6.725246 AGATCGGTTTTACTTTCTGTTTGTG 58.275 36.000 0.00 0.00 0.00 3.33
161 162 6.937436 AGATCGGTTTTACTTTCTGTTTGT 57.063 33.333 0.00 0.00 0.00 2.83
162 163 9.724839 TTTTAGATCGGTTTTACTTTCTGTTTG 57.275 29.630 0.00 0.00 0.00 2.93
165 166 9.503399 AGATTTTAGATCGGTTTTACTTTCTGT 57.497 29.630 0.00 0.00 0.00 3.41
174 175 8.630037 ACACTCAAAAGATTTTAGATCGGTTTT 58.370 29.630 0.00 0.00 0.00 2.43
175 176 8.076178 CACACTCAAAAGATTTTAGATCGGTTT 58.924 33.333 0.00 0.00 0.00 3.27
176 177 7.228706 ACACACTCAAAAGATTTTAGATCGGTT 59.771 33.333 0.00 0.00 0.00 4.44
177 178 6.710744 ACACACTCAAAAGATTTTAGATCGGT 59.289 34.615 0.00 0.00 0.00 4.69
178 179 7.017645 CACACACTCAAAAGATTTTAGATCGG 58.982 38.462 0.00 0.00 0.00 4.18
179 180 7.576236 ACACACACTCAAAAGATTTTAGATCG 58.424 34.615 0.00 0.00 0.00 3.69
180 181 9.736023 AAACACACACTCAAAAGATTTTAGATC 57.264 29.630 0.00 0.00 0.00 2.75
181 182 9.736023 GAAACACACACTCAAAAGATTTTAGAT 57.264 29.630 0.00 0.00 0.00 1.98
182 183 8.735315 TGAAACACACACTCAAAAGATTTTAGA 58.265 29.630 0.00 0.00 0.00 2.10
183 184 8.909708 TGAAACACACACTCAAAAGATTTTAG 57.090 30.769 0.00 0.00 0.00 1.85
184 185 9.698309 TTTGAAACACACACTCAAAAGATTTTA 57.302 25.926 0.00 0.00 36.42 1.52
185 186 8.600449 TTTGAAACACACACTCAAAAGATTTT 57.400 26.923 0.00 0.00 36.42 1.82
186 187 7.872483 ACTTTGAAACACACACTCAAAAGATTT 59.128 29.630 0.00 0.00 38.30 2.17
187 188 7.329226 CACTTTGAAACACACACTCAAAAGATT 59.671 33.333 0.00 0.00 38.30 2.40
188 189 6.808212 CACTTTGAAACACACACTCAAAAGAT 59.192 34.615 0.00 0.00 38.30 2.40
189 190 6.148948 CACTTTGAAACACACACTCAAAAGA 58.851 36.000 0.00 0.00 38.30 2.52
190 191 5.920273 ACACTTTGAAACACACACTCAAAAG 59.080 36.000 0.00 0.00 38.30 2.27
191 192 5.837437 ACACTTTGAAACACACACTCAAAA 58.163 33.333 0.00 0.00 38.30 2.44
192 193 5.446143 ACACTTTGAAACACACACTCAAA 57.554 34.783 0.00 0.00 36.87 2.69
193 194 6.751514 ATACACTTTGAAACACACACTCAA 57.248 33.333 0.00 0.00 0.00 3.02
194 195 8.445275 AATATACACTTTGAAACACACACTCA 57.555 30.769 0.00 0.00 0.00 3.41
225 226 9.959749 CTATTTTTCATAGCCCGCTATTTAAAA 57.040 29.630 18.53 18.53 37.16 1.52
226 227 8.079809 GCTATTTTTCATAGCCCGCTATTTAAA 58.920 33.333 6.48 7.86 40.69 1.52
227 228 7.572353 CGCTATTTTTCATAGCCCGCTATTTAA 60.572 37.037 6.48 2.47 42.89 1.52
228 229 6.128391 CGCTATTTTTCATAGCCCGCTATTTA 60.128 38.462 6.48 0.00 42.89 1.40
229 230 5.334879 CGCTATTTTTCATAGCCCGCTATTT 60.335 40.000 6.48 0.00 42.89 1.40
230 231 4.154195 CGCTATTTTTCATAGCCCGCTATT 59.846 41.667 6.48 0.00 42.89 1.73
231 232 3.684788 CGCTATTTTTCATAGCCCGCTAT 59.315 43.478 3.31 3.31 42.89 2.97
232 233 3.064207 CGCTATTTTTCATAGCCCGCTA 58.936 45.455 8.01 0.00 42.89 4.26
233 234 1.873591 CGCTATTTTTCATAGCCCGCT 59.126 47.619 8.01 0.00 42.89 5.52
234 235 1.069227 CCGCTATTTTTCATAGCCCGC 60.069 52.381 8.01 0.00 42.89 6.13
235 236 1.069227 GCCGCTATTTTTCATAGCCCG 60.069 52.381 8.01 1.13 42.89 6.13
236 237 1.069227 CGCCGCTATTTTTCATAGCCC 60.069 52.381 8.01 0.35 42.89 5.19
237 238 1.069227 CCGCCGCTATTTTTCATAGCC 60.069 52.381 8.01 0.00 42.89 3.93
238 239 1.871039 TCCGCCGCTATTTTTCATAGC 59.129 47.619 4.08 4.08 42.53 2.97
239 240 2.223377 GGTCCGCCGCTATTTTTCATAG 59.777 50.000 0.00 0.00 0.00 2.23
240 241 2.158871 AGGTCCGCCGCTATTTTTCATA 60.159 45.455 0.00 0.00 40.50 2.15
241 242 1.021968 GGTCCGCCGCTATTTTTCAT 58.978 50.000 0.00 0.00 0.00 2.57
242 243 0.035820 AGGTCCGCCGCTATTTTTCA 60.036 50.000 0.00 0.00 40.50 2.69
243 244 0.656259 GAGGTCCGCCGCTATTTTTC 59.344 55.000 0.00 0.00 40.50 2.29
244 245 0.035820 TGAGGTCCGCCGCTATTTTT 60.036 50.000 0.00 0.00 40.50 1.94
245 246 0.035820 TTGAGGTCCGCCGCTATTTT 60.036 50.000 0.00 0.00 40.50 1.82
246 247 0.035820 TTTGAGGTCCGCCGCTATTT 60.036 50.000 0.00 0.00 40.50 1.40
247 248 0.035820 TTTTGAGGTCCGCCGCTATT 60.036 50.000 0.00 0.00 40.50 1.73
248 249 0.180406 ATTTTGAGGTCCGCCGCTAT 59.820 50.000 0.00 0.00 40.50 2.97
249 250 0.461339 GATTTTGAGGTCCGCCGCTA 60.461 55.000 0.00 0.00 40.50 4.26
250 251 1.745489 GATTTTGAGGTCCGCCGCT 60.745 57.895 0.00 0.00 40.50 5.52
251 252 1.982073 CTGATTTTGAGGTCCGCCGC 61.982 60.000 0.00 0.00 40.50 6.53
252 253 1.982073 GCTGATTTTGAGGTCCGCCG 61.982 60.000 0.00 0.00 40.50 6.46
253 254 0.678048 AGCTGATTTTGAGGTCCGCC 60.678 55.000 0.00 0.00 0.00 6.13
254 255 2.024176 TAGCTGATTTTGAGGTCCGC 57.976 50.000 0.00 0.00 0.00 5.54
255 256 3.743396 GCTATAGCTGATTTTGAGGTCCG 59.257 47.826 17.75 0.00 38.21 4.79
256 257 4.708177 TGCTATAGCTGATTTTGAGGTCC 58.292 43.478 24.61 0.00 42.66 4.46
257 258 5.921004 CTGCTATAGCTGATTTTGAGGTC 57.079 43.478 24.61 0.00 41.71 3.85
276 277 2.431601 CTCGCTATAGCCCGCTGC 60.432 66.667 19.00 0.00 41.71 5.25
277 278 1.587043 TAGCTCGCTATAGCCCGCTG 61.587 60.000 30.67 15.14 43.86 5.18
278 279 0.681564 ATAGCTCGCTATAGCCCGCT 60.682 55.000 27.98 27.98 43.86 5.52
279 280 1.002251 CTATAGCTCGCTATAGCCCGC 60.002 57.143 24.82 19.43 46.26 6.13
285 286 2.357075 AGCACGCTATAGCTCGCTATA 58.643 47.619 27.04 15.61 42.01 1.31
286 287 1.169577 AGCACGCTATAGCTCGCTAT 58.830 50.000 27.04 15.05 42.01 2.97
287 288 1.463831 GTAGCACGCTATAGCTCGCTA 59.536 52.381 27.81 27.81 43.07 4.26
288 289 0.238817 GTAGCACGCTATAGCTCGCT 59.761 55.000 29.35 29.35 44.57 4.93
289 290 0.238817 AGTAGCACGCTATAGCTCGC 59.761 55.000 21.98 21.64 42.05 5.03
290 291 2.287069 ACAAGTAGCACGCTATAGCTCG 60.287 50.000 21.98 13.53 42.05 5.03
291 292 3.046390 CACAAGTAGCACGCTATAGCTC 58.954 50.000 21.98 11.04 42.05 4.09
292 293 2.799917 GCACAAGTAGCACGCTATAGCT 60.800 50.000 21.98 6.31 44.55 3.32
293 294 1.523095 GCACAAGTAGCACGCTATAGC 59.477 52.381 15.09 15.09 37.78 2.97
294 295 2.809446 TGCACAAGTAGCACGCTATAG 58.191 47.619 1.43 0.00 37.02 1.31
295 296 2.951457 TGCACAAGTAGCACGCTATA 57.049 45.000 1.43 0.00 37.02 1.31
296 297 1.935873 CATGCACAAGTAGCACGCTAT 59.064 47.619 1.43 0.00 45.95 2.97
297 298 1.067213 TCATGCACAAGTAGCACGCTA 60.067 47.619 0.00 0.00 45.95 4.26
298 299 0.320683 TCATGCACAAGTAGCACGCT 60.321 50.000 0.00 0.00 45.95 5.07
299 300 0.095935 CTCATGCACAAGTAGCACGC 59.904 55.000 0.00 0.00 45.95 5.34
300 301 1.391485 GTCTCATGCACAAGTAGCACG 59.609 52.381 0.00 0.00 45.95 5.34
301 302 1.734465 GGTCTCATGCACAAGTAGCAC 59.266 52.381 0.00 0.00 45.95 4.40
303 304 2.099141 TGGTCTCATGCACAAGTAGC 57.901 50.000 0.00 0.00 0.00 3.58
304 305 5.220739 GCTAAATGGTCTCATGCACAAGTAG 60.221 44.000 0.00 0.00 33.18 2.57
305 306 4.635765 GCTAAATGGTCTCATGCACAAGTA 59.364 41.667 0.00 0.00 33.18 2.24
306 307 3.441572 GCTAAATGGTCTCATGCACAAGT 59.558 43.478 0.00 0.00 33.18 3.16
307 308 3.441222 TGCTAAATGGTCTCATGCACAAG 59.559 43.478 0.00 0.00 33.18 3.16
308 309 3.419943 TGCTAAATGGTCTCATGCACAA 58.580 40.909 0.00 0.00 33.18 3.33
309 310 3.011818 CTGCTAAATGGTCTCATGCACA 58.988 45.455 0.00 0.00 33.18 4.57
310 311 2.223433 GCTGCTAAATGGTCTCATGCAC 60.223 50.000 0.00 0.00 33.18 4.57
311 312 2.019249 GCTGCTAAATGGTCTCATGCA 58.981 47.619 0.00 0.00 33.18 3.96
312 313 2.019249 TGCTGCTAAATGGTCTCATGC 58.981 47.619 0.00 0.00 33.18 4.06
313 314 4.135306 AGATGCTGCTAAATGGTCTCATG 58.865 43.478 0.00 0.00 33.18 3.07
314 315 4.434545 AGATGCTGCTAAATGGTCTCAT 57.565 40.909 0.00 0.00 34.56 2.90
315 316 3.920231 AGATGCTGCTAAATGGTCTCA 57.080 42.857 0.00 0.00 0.00 3.27
316 317 3.243002 GCAAGATGCTGCTAAATGGTCTC 60.243 47.826 0.00 0.00 40.96 3.36
317 318 2.686915 GCAAGATGCTGCTAAATGGTCT 59.313 45.455 0.00 0.00 40.96 3.85
318 319 3.075866 GCAAGATGCTGCTAAATGGTC 57.924 47.619 0.00 0.00 40.96 4.02
328 329 6.786529 GCTATAGCCTTTTTAGCAAGATGCTG 60.787 42.308 14.13 0.00 44.34 4.41
329 330 5.240403 GCTATAGCCTTTTTAGCAAGATGCT 59.760 40.000 14.13 10.05 45.66 3.79
330 331 5.456265 GCTATAGCCTTTTTAGCAAGATGC 58.544 41.667 14.13 0.00 38.53 3.91
331 332 5.334414 CCGCTATAGCCTTTTTAGCAAGATG 60.334 44.000 19.00 0.00 38.58 2.90
332 333 4.757149 CCGCTATAGCCTTTTTAGCAAGAT 59.243 41.667 19.00 0.00 38.58 2.40
333 334 4.127171 CCGCTATAGCCTTTTTAGCAAGA 58.873 43.478 19.00 0.00 38.58 3.02
334 335 3.251004 CCCGCTATAGCCTTTTTAGCAAG 59.749 47.826 19.00 0.30 38.58 4.01
335 336 3.211045 CCCGCTATAGCCTTTTTAGCAA 58.789 45.455 19.00 0.00 38.58 3.91
336 337 2.846193 CCCGCTATAGCCTTTTTAGCA 58.154 47.619 19.00 0.00 38.58 3.49
337 338 1.535896 GCCCGCTATAGCCTTTTTAGC 59.464 52.381 19.00 7.64 37.91 3.09
338 339 3.127425 AGCCCGCTATAGCCTTTTTAG 57.873 47.619 19.00 2.99 37.91 1.85
339 340 4.903045 ATAGCCCGCTATAGCCTTTTTA 57.097 40.909 19.00 6.18 37.47 1.52
340 341 3.790089 ATAGCCCGCTATAGCCTTTTT 57.210 42.857 19.00 4.18 37.47 1.94
341 342 4.473477 CTATAGCCCGCTATAGCCTTTT 57.527 45.455 23.85 5.54 46.26 2.27
348 349 1.404391 GCTTCGCTATAGCCCGCTATA 59.596 52.381 19.00 14.20 39.65 1.31
349 350 0.173708 GCTTCGCTATAGCCCGCTAT 59.826 55.000 19.00 13.46 41.58 2.97
350 351 0.894184 AGCTTCGCTATAGCCCGCTA 60.894 55.000 21.56 0.00 36.99 4.26
351 352 0.894184 TAGCTTCGCTATAGCCCGCT 60.894 55.000 24.41 24.41 40.44 5.52
352 353 1.585006 TAGCTTCGCTATAGCCCGC 59.415 57.895 19.00 17.12 40.44 6.13
360 361 0.894184 AGCCGGCTATAGCTTCGCTA 60.894 55.000 31.86 0.00 45.55 4.26
361 362 0.894184 TAGCCGGCTATAGCTTCGCT 60.894 55.000 32.24 25.87 43.41 4.93
362 363 0.173708 ATAGCCGGCTATAGCTTCGC 59.826 55.000 41.03 20.23 40.56 4.70
363 364 2.656560 AATAGCCGGCTATAGCTTCG 57.343 50.000 41.53 18.50 40.56 3.79
364 365 6.427242 AGTTTTAAATAGCCGGCTATAGCTTC 59.573 38.462 41.53 29.01 40.56 3.86
365 366 6.296803 AGTTTTAAATAGCCGGCTATAGCTT 58.703 36.000 41.53 33.42 40.56 3.74
366 367 5.866207 AGTTTTAAATAGCCGGCTATAGCT 58.134 37.500 41.53 30.55 43.20 3.32
367 368 7.548075 TCATAGTTTTAAATAGCCGGCTATAGC 59.452 37.037 41.53 29.09 38.20 2.97
368 369 8.997621 TCATAGTTTTAAATAGCCGGCTATAG 57.002 34.615 41.53 22.50 38.20 1.31
369 370 9.953565 AATCATAGTTTTAAATAGCCGGCTATA 57.046 29.630 41.53 28.18 38.20 1.31
370 371 8.863872 AATCATAGTTTTAAATAGCCGGCTAT 57.136 30.769 37.79 37.79 40.63 2.97
371 372 9.781633 TTAATCATAGTTTTAAATAGCCGGCTA 57.218 29.630 36.88 36.88 0.00 3.93
372 373 8.685838 TTAATCATAGTTTTAAATAGCCGGCT 57.314 30.769 34.85 34.85 0.00 5.52
373 374 9.341899 CATTAATCATAGTTTTAAATAGCCGGC 57.658 33.333 21.89 21.89 0.00 6.13
374 375 9.341899 GCATTAATCATAGTTTTAAATAGCCGG 57.658 33.333 0.00 0.00 0.00 6.13
391 392 9.487790 TGTTCATATATGACGAAGCATTAATCA 57.512 29.630 15.10 0.00 36.36 2.57
423 424 9.844790 GAATGTGTTGTGAGATTAATGATTTCA 57.155 29.630 0.00 0.00 0.00 2.69
432 433 4.754618 AGCGTTGAATGTGTTGTGAGATTA 59.245 37.500 0.00 0.00 0.00 1.75
439 440 2.020720 TCCAAGCGTTGAATGTGTTGT 58.979 42.857 0.15 0.00 0.00 3.32
452 453 1.164411 TAAGGTGTGCATTCCAAGCG 58.836 50.000 11.67 0.00 33.85 4.68
468 471 7.276438 GGTTTTTCTACCACCGTACACTATAAG 59.724 40.741 0.00 0.00 38.12 1.73
499 502 2.270434 ATGGGAGCCACTTAGAAGGA 57.730 50.000 0.21 0.00 35.80 3.36
505 508 5.598005 CCAAAATGAATATGGGAGCCACTTA 59.402 40.000 0.00 0.00 35.80 2.24
548 552 2.334971 TGAATGCAAGCGTGACAATG 57.665 45.000 2.99 0.00 0.00 2.82
549 553 2.871133 CATGAATGCAAGCGTGACAAT 58.129 42.857 2.99 0.00 0.00 2.71
565 569 2.156917 CTGAAGCAGAACCTTGCATGA 58.843 47.619 0.00 0.00 46.47 3.07
585 589 1.132453 GGCATTTCCTAAAGTGACCGC 59.868 52.381 0.00 0.00 0.00 5.68
586 590 1.743394 GGGCATTTCCTAAAGTGACCG 59.257 52.381 0.00 0.00 40.14 4.79
596 600 4.526650 AGTTTATTTTCGTGGGCATTTCCT 59.473 37.500 0.00 0.00 34.39 3.36
683 688 5.020132 TGAGGAAAGAGAACTAGCTAAGCT 58.980 41.667 0.00 0.00 43.41 3.74
804 811 8.582437 TCTCTAGCTAGCTGTGTTTAAAAACTA 58.418 33.333 27.68 0.41 39.59 2.24
805 812 7.442656 TCTCTAGCTAGCTGTGTTTAAAAACT 58.557 34.615 27.68 0.00 39.59 2.66
806 813 7.385478 ACTCTCTAGCTAGCTGTGTTTAAAAAC 59.615 37.037 27.68 1.20 39.33 2.43
807 814 7.442656 ACTCTCTAGCTAGCTGTGTTTAAAAA 58.557 34.615 27.68 1.67 0.00 1.94
901 912 8.529476 CCGTTATATAGGCAAACTAATCCTAGT 58.471 37.037 0.00 0.00 40.25 2.57
902 913 8.928270 CCGTTATATAGGCAAACTAATCCTAG 57.072 38.462 0.00 0.00 36.07 3.02
968 980 6.264088 ACCTTCTACGTATTGTTCTCGATTC 58.736 40.000 0.00 0.00 0.00 2.52
989 1001 3.451178 AGAAGATGCCATTGTACGTACCT 59.549 43.478 22.43 7.62 0.00 3.08
990 1002 3.793559 AGAAGATGCCATTGTACGTACC 58.206 45.455 22.43 7.55 0.00 3.34
1039 1057 0.813184 TCGTTGGTCGGTGGAGATAC 59.187 55.000 0.00 0.00 40.32 2.24
1167 1185 1.544825 ATGCCTGGTACGTCAGCACT 61.545 55.000 0.00 0.00 33.64 4.40
1203 1221 2.147958 GTCTCACATTTGCCGTGGTTA 58.852 47.619 0.00 0.00 35.03 2.85
1218 1236 1.194781 GGTTGGAGCTGGAGGTCTCA 61.195 60.000 0.00 0.42 41.88 3.27
1718 1737 4.614946 ACTACGTATATTTTCGCTGGTCC 58.385 43.478 0.00 0.00 0.00 4.46
1791 1810 0.392998 AGCAACATCGACCCCATCAC 60.393 55.000 0.00 0.00 0.00 3.06
1801 1820 5.920273 ACAAAAACAAAGGATAGCAACATCG 59.080 36.000 0.00 0.00 0.00 3.84
1847 1866 5.527582 CACCAAACCTGATAGCACTATAACC 59.472 44.000 0.00 0.00 0.00 2.85
1889 1913 6.767902 TGCAGTATTAAGAAACCCATCATCTC 59.232 38.462 0.00 0.00 0.00 2.75
1991 2053 6.153627 TTCTTTTGAACTGGGTTACTCCCAC 61.154 44.000 1.04 0.00 46.36 4.61
2083 2152 8.890718 GGGAGTATATACTTGGAAAACTTTGTC 58.109 37.037 16.46 0.00 36.50 3.18
2241 2322 9.117183 TGCCAAGCATATATCATTAGATTCATC 57.883 33.333 0.00 0.00 32.54 2.92
2490 5602 5.607119 ACAACGTCGATCTTAAAGCAAAT 57.393 34.783 0.00 0.00 0.00 2.32
2544 5657 0.324285 AGACCTCTTCAGGCAAGCTG 59.676 55.000 0.00 0.00 45.05 4.24
2554 5667 2.689646 CAAAACGGGAGAGACCTCTTC 58.310 52.381 0.58 0.00 40.61 2.87
2569 5682 4.031314 GGAAGAAGTGTTGTTTCGCAAAAC 59.969 41.667 0.00 0.00 43.88 2.43
2591 5704 2.826674 AAATGTGGTGGGGTAGATGG 57.173 50.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.