AutoCloner

Multiple sequence alignment - TraesCS6D01G372500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G372500	chr6D	100.000	2820	0	0	1	2820	457637442	457634623	0.000000e+00	5208.0
1	TraesCS6D01G372500	chr6D	85.358	2083	239	32	624	2693	457591196	457589167	0.000000e+00	2097.0
2	TraesCS6D01G372500	chr6A	93.045	2545	134	23	14	2543	604574644	604572128	0.000000e+00	3679.0
3	TraesCS6D01G372500	chr6A	85.434	2087	236	37	624	2693	604456251	604454216	0.000000e+00	2108.0
4	TraesCS6D01G372500	chr6A	91.406	256	20	2	2540	2794	604571525	604571271	1.610000e-92	350.0
5	TraesCS6D01G372500	chr6B	88.990	2525	198	45	31	2511	696100902	696098414	0.000000e+00	3049.0
6	TraesCS6D01G372500	chr6B	84.384	2094	239	44	624	2688	696021347	696019313	0.000000e+00	1975.0
7	TraesCS6D01G372500	chr6B	90.968	775	56	9	2051	2820	696096879	696096114	0.000000e+00	1031.0
8	TraesCS6D01G372500	chr6B	100.000	50	0	0	1	50	696100985	696100936	2.990000e-15	93.5
9	TraesCS6D01G372500	chr2D	82.927	1230	149	34	754	1958	21642282	21643475	0.000000e+00	1051.0
10	TraesCS6D01G372500	chr2D	82.968	1233	143	35	754	1958	21681094	21682287	0.000000e+00	1051.0
11	TraesCS6D01G372500	chr2D	82.143	112	8	6	557	667	21619409	21619509	5.010000e-13	86.1
12	TraesCS6D01G372500	chr2A	82.453	1231	153	38	754	1958	23878627	23879820	0.000000e+00	1018.0
13	TraesCS6D01G372500	chr2A	82.449	1225	152	35	760	1958	23828229	23829416	0.000000e+00	1013.0
14	TraesCS6D01G372500	chr2A	81.935	155	18	7	553	704	23828081	23828228	3.810000e-24	122.0
15	TraesCS6D01G372500	chr2B	81.057	1230	166	39	754	1958	34889999	34888812	0.000000e+00	918.0
16	TraesCS6D01G372500	chr2B	100.000	29	0	0	2706	2734	468704986	468705014	1.000000e-03	54.7
17	TraesCS6D01G372500	chr1D	95.556	45	1	1	2692	2735	97910352	97910396	1.400000e-08	71.3
18	TraesCS6D01G372500	chr7B	92.857	42	3	0	2706	2747	206509245	206509286	8.430000e-06	62.1
19	TraesCS6D01G372500	chr7D	100.000	31	0	0	2706	2736	234553697	234553727	1.090000e-04	58.4
20	TraesCS6D01G372500	chr3D	100.000	31	0	0	2706	2736	553932128	553932098	1.090000e-04	58.4
21	TraesCS6D01G372500	chr4A	100.000	30	0	0	2706	2735	603947621	603947650	3.920000e-04	56.5
22	TraesCS6D01G372500	chr5D	100.000	29	0	0	2706	2734	534008275	534008303	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G372500	chr6D	457634623	457637442	2819	True	5208.000000	5208	100.000000	1	2820	1	chr6D.!!$R2	2819
1	TraesCS6D01G372500	chr6D	457589167	457591196	2029	True	2097.000000	2097	85.358000	624	2693	1	chr6D.!!$R1	2069
2	TraesCS6D01G372500	chr6A	604454216	604456251	2035	True	2108.000000	2108	85.434000	624	2693	1	chr6A.!!$R1	2069
3	TraesCS6D01G372500	chr6A	604571271	604574644	3373	True	2014.500000	3679	92.225500	14	2794	2	chr6A.!!$R2	2780
4	TraesCS6D01G372500	chr6B	696019313	696021347	2034	True	1975.000000	1975	84.384000	624	2688	1	chr6B.!!$R1	2064
5	TraesCS6D01G372500	chr6B	696096114	696100985	4871	True	1391.166667	3049	93.319333	1	2820	3	chr6B.!!$R2	2819
6	TraesCS6D01G372500	chr2D	21642282	21643475	1193	False	1051.000000	1051	82.927000	754	1958	1	chr2D.!!$F2	1204
7	TraesCS6D01G372500	chr2D	21681094	21682287	1193	False	1051.000000	1051	82.968000	754	1958	1	chr2D.!!$F3	1204
8	TraesCS6D01G372500	chr2A	23878627	23879820	1193	False	1018.000000	1018	82.453000	754	1958	1	chr2A.!!$F1	1204
9	TraesCS6D01G372500	chr2A	23828081	23829416	1335	False	567.500000	1013	82.192000	553	1958	2	chr2A.!!$F2	1405
10	TraesCS6D01G372500	chr2B	34888812	34889999	1187	True	918.000000	918	81.057000	754	1958	1	chr2B.!!$R1	1204

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
70	124	0.918983	CACAGCCCTCCATTCCCTTA	59.081	55.0	0.00	0.0	0.0	2.69	F
416	472	1.583556	TATGTGGGACAGTGCATCCT	58.416	50.0	4.86	0.0	41.8	3.24	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1401	1504	1.067846	TGGTCAAGATCGTTCCACTCG	60.068	52.381	0.00	0.0	0.0	4.18	R
2390	4534	0.244450	CGCACATTGACAAGGGCATT	59.756	50.000	4.68	0.0	0.0	3.56	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
70	124	0.918983	CACAGCCCTCCATTCCCTTA	59.081	55.000	0.00	0.00	0.00	2.69
124	179	9.445878	TGAAAGATGATCATGAGCTATAAATCC	57.554	33.333	14.30	0.00	0.00	3.01
134	189	3.484407	AGCTATAAATCCAGCTTGCCTG	58.516	45.455	0.00	0.00	45.80	4.85
149	204	1.671901	GCCTGAAGAGGTCTCTCCCG	61.672	65.000	0.51	0.00	42.15	5.14
171	226	4.258860	CGTTTTGCGAAACAACACTTCTTC	60.259	41.667	25.52	0.00	44.25	2.87
297	352	9.169592	AGCTAAATTTAGGATAACTACGCAAAA	57.830	29.630	23.37	0.00	0.00	2.44
298	353	9.777575	GCTAAATTTAGGATAACTACGCAAAAA	57.222	29.630	23.37	0.00	0.00	1.94
397	453	7.116519	GTCGACTGCTACAGTTTTAGAATCTTT	59.883	37.037	8.70	0.00	45.44	2.52
401	457	9.726438	ACTGCTACAGTTTTAGAATCTTTATGT	57.274	29.630	0.00	0.00	42.59	2.29
403	459	8.946085	TGCTACAGTTTTAGAATCTTTATGTGG	58.054	33.333	0.00	0.00	0.00	4.17
404	460	8.398665	GCTACAGTTTTAGAATCTTTATGTGGG	58.601	37.037	0.00	0.00	0.00	4.61
406	462	8.336801	ACAGTTTTAGAATCTTTATGTGGGAC	57.663	34.615	0.00	0.00	0.00	4.46
407	463	7.942341	ACAGTTTTAGAATCTTTATGTGGGACA	59.058	33.333	0.00	0.00	0.00	4.02
409	465	8.164070	AGTTTTAGAATCTTTATGTGGGACAGT	58.836	33.333	0.00	0.00	41.80	3.55
410	466	7.921786	TTTAGAATCTTTATGTGGGACAGTG	57.078	36.000	0.00	0.00	41.80	3.66
411	467	4.265073	AGAATCTTTATGTGGGACAGTGC	58.735	43.478	0.00	0.00	41.80	4.40
412	468	3.719268	ATCTTTATGTGGGACAGTGCA	57.281	42.857	0.00	0.00	41.80	4.57
413	469	3.719268	TCTTTATGTGGGACAGTGCAT	57.281	42.857	0.00	0.00	41.80	3.96
414	470	3.609853	TCTTTATGTGGGACAGTGCATC	58.390	45.455	0.00	0.00	41.80	3.91
415	471	2.418368	TTATGTGGGACAGTGCATCC	57.582	50.000	0.00	0.00	41.80	3.51
416	472	1.583556	TATGTGGGACAGTGCATCCT	58.416	50.000	4.86	0.00	41.80	3.24
434	490	5.047802	GCATCCTCTCACTTCCAAAATGAAA	60.048	40.000	0.00	0.00	0.00	2.69
436	492	5.940617	TCCTCTCACTTCCAAAATGAAAGA	58.059	37.500	0.00	0.00	0.00	2.52
498	564	6.537453	TGTTGGTATTCATTTTATGTGGGG	57.463	37.500	0.00	0.00	0.00	4.96
521	587	3.257873	TGTAATTTCGAACGGGGTAGACA	59.742	43.478	0.00	0.00	0.00	3.41
532	598	2.695585	GGGGTAGACAATCAGGAGGAT	58.304	52.381	0.00	0.00	38.05	3.24
536	602	5.510430	GGGTAGACAATCAGGAGGATTTTT	58.490	41.667	0.00	0.00	43.76	1.94
602	673	3.900388	AATGGCGTACTTGCGTAAAAA	57.100	38.095	0.00	0.00	35.06	1.94
667	739	3.943381	TGGAAGAAGACTTGCATAGCATG	59.057	43.478	0.00	3.68	46.43	4.06
692	764	6.751514	ATCACCAATTAAATTCACGTGCTA	57.248	33.333	11.67	1.08	0.00	3.49
707	779	6.206498	TCACGTGCTAGCTGTAAACTATATG	58.794	40.000	17.23	0.00	0.00	1.78
772	845	6.926272	GCACTAATTAACCATTCACCAAAACA	59.074	34.615	0.00	0.00	0.00	2.83
992	1086	3.059393	CACACACATCAAGCACACAGTAG	60.059	47.826	0.00	0.00	0.00	2.57
1068	1168	4.353437	ACCAACGAGGACGACGGC	62.353	66.667	0.00	0.00	42.66	5.68
1399	1502	3.067011	TCCAGCGAGGAAGAAAGGA	57.933	52.632	0.00	0.00	45.65	3.36
1401	1504	1.002087	TCCAGCGAGGAAGAAAGGAAC	59.998	52.381	0.00	0.00	45.65	3.62
1455	1561	2.358737	CTCCGGCCGCTTGACTTT	60.359	61.111	22.85	0.00	0.00	2.66
1536	1642	0.610687	AGAACTGCTTCTTCCCCGAG	59.389	55.000	0.00	0.00	32.29	4.63
1539	1645	2.607750	TGCTTCTTCCCCGAGGCT	60.608	61.111	0.00	0.00	36.99	4.58
1719	1827	6.513180	ACTGATTCTCGTAACTTGAAGTTGA	58.487	36.000	20.06	9.08	39.11	3.18
2012	2142	5.222631	CCTTTGTTTGCTTTAAGCTCGATT	58.777	37.500	18.20	0.00	42.97	3.34
2296	4440	3.780294	TGGGGAGGCCACATATATACATC	59.220	47.826	5.01	0.00	28.45	3.06
2317	4461	8.425577	ACATCTAGAGACATTAAAATTGGACG	57.574	34.615	0.00	0.00	0.00	4.79
2336	4480	5.107824	GGACGTTAATCTCTCCACCTTAAC	58.892	45.833	0.00	0.00	33.04	2.01
2351	4495	4.069304	ACCTTAACGCACTAGCAATTTCA	58.931	39.130	0.00	0.00	42.27	2.69
2413	4557	0.179156	CCCTTGTCAATGTGCGCATC	60.179	55.000	15.91	8.33	33.50	3.91
2426	4570	3.272334	GCATCGGCCGTGGATCAC	61.272	66.667	27.15	5.17	0.00	3.06
2500	4644	4.470334	TCCCATAGCAAAATCAAAAGCC	57.530	40.909	0.00	0.00	0.00	4.35
2507	4651	4.129380	AGCAAAATCAAAAGCCTTTGGTC	58.871	39.130	7.91	0.00	41.98	4.02
2517	4661	1.906574	AGCCTTTGGTCGATTCAGGTA	59.093	47.619	0.00	0.00	0.00	3.08
2528	4672	3.454447	TCGATTCAGGTATGTGGATGGTT	59.546	43.478	0.00	0.00	0.00	3.67
2641	5402	7.452880	TCGAGAATGAGATCCAACAAAAATT	57.547	32.000	0.00	0.00	0.00	1.82
2720	5481	4.320870	TCCGATCTTGAACTAAAACCACC	58.679	43.478	0.00	0.00	0.00	4.61
2736	5497	5.467035	AACCACCACACTTATTTTGGATG	57.533	39.130	0.00	0.00	34.24	3.51
2737	5498	4.735369	ACCACCACACTTATTTTGGATGA	58.265	39.130	0.00	0.00	34.24	2.92
2741	5502	6.015519	CCACCACACTTATTTTGGATGAAAGA	60.016	38.462	0.00	0.00	34.24	2.52
2763	5524	7.979786	AGAGAGTAAATCTTAACATCCTCCA	57.020	36.000	0.00	0.00	38.84	3.86
2778	5539	5.249393	ACATCCTCCATCAGTCTAACTTGTT	59.751	40.000	0.00	0.00	0.00	2.83
2784	5545	7.332182	CCTCCATCAGTCTAACTTGTTTAAGTC	59.668	40.741	0.00	0.00	46.14	3.01
2794	5555	9.598517	TCTAACTTGTTTAAGTCGAGGTTTTTA	57.401	29.630	0.00	0.00	46.14	1.52
2800	5562	9.518906	TTGTTTAAGTCGAGGTTTTTAAAATCC	57.481	29.630	17.03	17.03	29.74	3.01
2801	5563	7.856894	TGTTTAAGTCGAGGTTTTTAAAATCCG	59.143	33.333	18.16	11.72	33.87	4.18
2809	5571	7.387397	TCGAGGTTTTTAAAATCCGTTAAGCTA	59.613	33.333	18.16	2.41	33.87	3.32

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
70	124	5.607119	ACAACGTCGATCTTAAAGCAAAT	57.393	34.783	0.00	0.00	0.00	2.32
124	179	0.324285	AGACCTCTTCAGGCAAGCTG	59.676	55.000	0.00	0.00	45.05	4.24
134	189	2.689646	CAAAACGGGAGAGACCTCTTC	58.310	52.381	0.58	0.00	40.61	2.87
149	204	4.031314	GGAAGAAGTGTTGTTTCGCAAAAC	59.969	41.667	0.00	0.00	43.88	2.43
171	226	2.826674	AAATGTGGTGGGGTAGATGG	57.173	50.000	0.00	0.00	0.00	3.51
297	352	8.077386	CACGTGTAAAACACCCAGTATATTTTT	58.923	33.333	7.58	0.00	45.93	1.94
298	353	7.586747	CACGTGTAAAACACCCAGTATATTTT	58.413	34.615	7.58	0.00	45.93	1.82
397	453	1.486310	GAGGATGCACTGTCCCACATA	59.514	52.381	1.05	0.00	36.36	2.29
401	457	0.545071	TGAGAGGATGCACTGTCCCA	60.545	55.000	1.05	0.00	36.36	4.37
403	459	0.901124	AGTGAGAGGATGCACTGTCC	59.099	55.000	0.00	0.00	43.26	4.02
404	460	2.615869	GAAGTGAGAGGATGCACTGTC	58.384	52.381	0.00	0.00	44.06	3.51
406	462	1.277273	TGGAAGTGAGAGGATGCACTG	59.723	52.381	0.00	0.00	44.06	3.66
407	463	1.649321	TGGAAGTGAGAGGATGCACT	58.351	50.000	0.00	0.00	46.59	4.40
409	465	3.507162	TTTTGGAAGTGAGAGGATGCA	57.493	42.857	0.00	0.00	0.00	3.96
410	466	4.012374	TCATTTTGGAAGTGAGAGGATGC	58.988	43.478	0.00	0.00	0.00	3.91
411	467	6.432162	TCTTTCATTTTGGAAGTGAGAGGATG	59.568	38.462	4.65	0.00	0.00	3.51
412	468	6.432472	GTCTTTCATTTTGGAAGTGAGAGGAT	59.568	38.462	4.65	0.00	0.00	3.24
413	469	5.765182	GTCTTTCATTTTGGAAGTGAGAGGA	59.235	40.000	4.65	0.00	0.00	3.71
414	470	5.048434	GGTCTTTCATTTTGGAAGTGAGAGG	60.048	44.000	4.65	0.00	0.00	3.69
415	471	5.767168	AGGTCTTTCATTTTGGAAGTGAGAG	59.233	40.000	0.00	0.00	0.00	3.20
416	472	5.694995	AGGTCTTTCATTTTGGAAGTGAGA	58.305	37.500	0.00	0.00	0.00	3.27
434	490	5.625150	AGCATAACTGAACAAAAGAGGTCT	58.375	37.500	0.00	0.00	0.00	3.85
436	492	6.321181	TCAAAGCATAACTGAACAAAAGAGGT	59.679	34.615	0.00	0.00	0.00	3.85
485	548	6.857956	TCGAAATTACACCCCACATAAAATG	58.142	36.000	0.00	0.00	0.00	2.32
498	564	3.614176	GTCTACCCCGTTCGAAATTACAC	59.386	47.826	0.00	0.00	0.00	2.90
507	573	1.470979	CCTGATTGTCTACCCCGTTCG	60.471	57.143	0.00	0.00	0.00	3.95
533	599	6.409120	CCTGATCCCCCTTTCAAAAAGAAAAA	60.409	38.462	1.06	0.00	45.11	1.94
536	602	4.140805	TCCTGATCCCCCTTTCAAAAAGAA	60.141	41.667	1.06	0.00	0.00	2.52
538	604	3.766051	CTCCTGATCCCCCTTTCAAAAAG	59.234	47.826	0.00	0.00	0.00	2.27
548	616	3.747708	CGTTAATTTCCTCCTGATCCCCC	60.748	52.174	0.00	0.00	0.00	5.40
551	619	4.766375	TCACGTTAATTTCCTCCTGATCC	58.234	43.478	0.00	0.00	0.00	3.36
602	673	1.409427	GTCGTAGCTACTCATGGGCTT	59.591	52.381	21.20	0.00	37.50	4.35
603	674	1.033574	GTCGTAGCTACTCATGGGCT	58.966	55.000	21.20	0.56	39.74	5.19
604	675	1.033574	AGTCGTAGCTACTCATGGGC	58.966	55.000	21.20	7.22	0.00	5.36
605	676	3.478509	ACTAGTCGTAGCTACTCATGGG	58.521	50.000	21.20	5.17	0.00	4.00
606	677	4.817464	AGAACTAGTCGTAGCTACTCATGG	59.183	45.833	21.20	10.73	0.00	3.66
607	678	5.049954	GGAGAACTAGTCGTAGCTACTCATG	60.050	48.000	21.20	6.26	30.85	3.07
612	683	4.273235	GGAAGGAGAACTAGTCGTAGCTAC	59.727	50.000	14.19	14.19	0.00	3.58
667	739	6.551736	AGCACGTGAATTTAATTGGTGATAC	58.448	36.000	22.23	0.00	0.00	2.24
692	764	5.163205	TGACATGGGCATATAGTTTACAGCT	60.163	40.000	0.00	0.00	0.00	4.24
707	779	1.021390	CCAACTCGTCTGACATGGGC	61.021	60.000	8.73	0.00	0.00	5.36
747	820	6.926272	TGTTTTGGTGAATGGTTAATTAGTGC	59.074	34.615	0.00	0.00	0.00	4.40
772	845	2.183679	CTGGTCCCAACTCTCTAGCTT	58.816	52.381	0.00	0.00	0.00	3.74
956	1050	0.469494	TGTGTGCTGGCTCTGAAAGA	59.531	50.000	0.00	0.00	43.69	2.52
992	1086	1.668419	AGAAGATGCCATTGTACGCC	58.332	50.000	0.00	0.00	0.00	5.68
1068	1168	2.823829	GCCGGCGGCTGTTATCTTG	61.824	63.158	41.44	5.24	46.69	3.02
1185	1288	3.712907	GGGGACAGCGCCTGGTAA	61.713	66.667	2.29	0.00	43.42	2.85
1350	1453	1.554042	CGTTGAAGCCGCGTAGTGTT	61.554	55.000	4.92	0.00	35.45	3.32
1399	1502	2.609737	GGTCAAGATCGTTCCACTCGTT	60.610	50.000	0.00	0.00	0.00	3.85
1401	1504	1.067846	TGGTCAAGATCGTTCCACTCG	60.068	52.381	0.00	0.00	0.00	4.18
1455	1561	2.679934	CGCGAAGAAGGCATGCACA	61.680	57.895	21.36	0.00	0.00	4.57
1536	1642	4.329545	TCGGTGTTCCTGCCAGCC	62.330	66.667	0.00	0.00	0.00	4.85
1539	1645	2.525629	TCCTCGGTGTTCCTGCCA	60.526	61.111	0.00	0.00	0.00	4.92
1662	1768	1.455822	AGGGATGGACCACCTTTTGA	58.544	50.000	0.00	0.00	41.20	2.69
1665	1771	4.692523	ATTTAAGGGATGGACCACCTTT	57.307	40.909	18.82	15.50	41.65	3.11
1695	1802	6.421202	GTCAACTTCAAGTTACGAGAATCAGT	59.579	38.462	1.43	0.00	36.03	3.41
1719	1827	5.534207	TTCAATCAATTTCTGGCAAGTGT	57.466	34.783	0.00	0.00	0.00	3.55
1855	1981	9.320352	ACACGCACACTGAACATATATAATTAA	57.680	29.630	0.00	0.00	0.00	1.40
1856	1982	8.760569	CACACGCACACTGAACATATATAATTA	58.239	33.333	0.00	0.00	0.00	1.40
2317	4461	4.329256	GTGCGTTAAGGTGGAGAGATTAAC	59.671	45.833	0.00	0.00	35.67	2.01
2336	4480	1.466167	ACTGCTGAAATTGCTAGTGCG	59.534	47.619	0.00	0.00	43.34	5.34
2390	4534	0.244450	CGCACATTGACAAGGGCATT	59.756	50.000	4.68	0.00	0.00	3.56
2426	4570	0.529378	GCCCACTCTGCAAAGAATGG	59.471	55.000	0.00	0.00	35.19	3.16
2500	4644	3.623060	CCACATACCTGAATCGACCAAAG	59.377	47.826	0.00	0.00	0.00	2.77
2507	4651	3.475566	ACCATCCACATACCTGAATCG	57.524	47.619	0.00	0.00	0.00	3.34
2517	4661	3.456277	GAGGGTCTTCTAACCATCCACAT	59.544	47.826	0.00	0.00	42.84	3.21
2528	4672	5.371769	TGGTAGCATACTAGAGGGTCTTCTA	59.628	44.000	0.00	0.00	42.51	2.10
2600	5359	3.054166	CTCGATTCACACGTTGTAACCA	58.946	45.455	0.00	0.00	0.00	3.67
2720	5481	8.103948	ACTCTCTTTCATCCAAAATAAGTGTG	57.896	34.615	0.00	0.00	0.00	3.82
2736	5497	9.320352	GGAGGATGTTAAGATTTACTCTCTTTC	57.680	37.037	10.53	0.00	34.81	2.62
2737	5498	8.826765	TGGAGGATGTTAAGATTTACTCTCTTT	58.173	33.333	10.53	0.00	34.81	2.52
2741	5502	8.324191	TGATGGAGGATGTTAAGATTTACTCT	57.676	34.615	10.53	0.00	34.96	3.24
2763	5524	7.091443	CCTCGACTTAAACAAGTTAGACTGAT	58.909	38.462	0.00	0.00	32.22	2.90
2778	5539	7.495135	ACGGATTTTAAAAACCTCGACTTAA	57.505	32.000	20.96	0.00	0.00	1.85
2784	5545	6.376177	AGCTTAACGGATTTTAAAAACCTCG	58.624	36.000	20.96	15.73	0.00	4.63
2794	5555	6.364976	GTGTTTGCAATAGCTTAACGGATTTT	59.635	34.615	0.00	0.00	42.74	1.82
2795	5556	5.861787	GTGTTTGCAATAGCTTAACGGATTT	59.138	36.000	0.00	0.00	42.74	2.17

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.