Multiple sequence alignment - TraesCS6D01G371900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G371900 chr6D 100.000 4773 0 0 1 4773 457142822 457138050 0.000000e+00 8815.0
1 TraesCS6D01G371900 chr6D 93.471 291 16 3 3612 3900 457130037 457129748 3.410000e-116 429.0
2 TraesCS6D01G371900 chr6D 94.872 78 3 1 3538 3614 457133293 457133216 2.330000e-23 121.0
3 TraesCS6D01G371900 chr6D 85.714 105 8 4 3911 4015 1928696 1928793 2.350000e-18 104.0
4 TraesCS6D01G371900 chr6D 93.617 47 0 2 4014 4059 457129752 457129708 3.080000e-07 67.6
5 TraesCS6D01G371900 chr6B 91.887 2453 127 28 1490 3900 695796748 695794326 0.000000e+00 3362.0
6 TraesCS6D01G371900 chr6B 94.839 872 34 7 547 1411 695798066 695797199 0.000000e+00 1351.0
7 TraesCS6D01G371900 chr6B 93.082 318 17 1 236 548 695798319 695798002 1.210000e-125 460.0
8 TraesCS6D01G371900 chr6B 97.794 136 3 0 1 136 695798459 695798324 7.990000e-58 235.0
9 TraesCS6D01G371900 chr6B 100.000 43 0 0 4012 4054 695794329 695794287 3.960000e-11 80.5
10 TraesCS6D01G371900 chr5A 94.712 1456 44 8 2342 3767 531467391 531468843 0.000000e+00 2231.0
11 TraesCS6D01G371900 chr5A 93.394 1105 41 8 816 1912 531465934 531467014 0.000000e+00 1607.0
12 TraesCS6D01G371900 chr5A 94.495 763 36 6 4014 4773 531469012 531469771 0.000000e+00 1171.0
13 TraesCS6D01G371900 chr5A 89.071 366 18 11 1963 2316 531467037 531467392 7.340000e-118 435.0
14 TraesCS6D01G371900 chr5A 94.828 174 8 1 3728 3900 531468843 531469016 2.190000e-68 270.0
15 TraesCS6D01G371900 chr5A 96.324 136 5 0 1 136 531465625 531465760 1.730000e-54 224.0
16 TraesCS6D01G371900 chr5A 83.942 137 14 5 4625 4757 394451479 394451347 1.800000e-24 124.0
17 TraesCS6D01G371900 chr5A 100.000 29 0 0 921 949 531467038 531467010 2.000000e-03 54.7
18 TraesCS6D01G371900 chr6A 94.430 1185 54 6 2726 3900 604108542 604107360 0.000000e+00 1812.0
19 TraesCS6D01G371900 chr6A 94.634 969 35 6 822 1790 604115587 604114636 0.000000e+00 1485.0
20 TraesCS6D01G371900 chr6A 93.229 960 42 12 1785 2727 604109577 604108624 0.000000e+00 1391.0
21 TraesCS6D01G371900 chr6A 80.480 666 95 32 4105 4755 91859236 91858591 1.200000e-130 477.0
22 TraesCS6D01G371900 chr6A 95.588 136 6 0 1 136 604115957 604115822 8.040000e-53 219.0
23 TraesCS6D01G371900 chr6A 81.513 119 19 3 3899 4015 73642657 73642774 1.410000e-15 95.3
24 TraesCS6D01G371900 chr6A 89.855 69 4 3 3892 3957 51249727 51249795 8.510000e-13 86.1
25 TraesCS6D01G371900 chr6A 95.833 48 0 1 4012 4059 604107363 604107318 5.120000e-10 76.8
26 TraesCS6D01G371900 chr3D 83.788 660 88 16 4105 4755 231737687 231737038 4.080000e-170 608.0
27 TraesCS6D01G371900 chr3D 80.799 651 99 21 4105 4743 165765158 165765794 2.000000e-133 486.0
28 TraesCS6D01G371900 chr3A 82.819 681 82 18 4105 4757 296919921 296920594 1.150000e-160 577.0
29 TraesCS6D01G371900 chr2D 82.716 648 85 20 4104 4742 194646739 194646110 6.980000e-153 551.0
30 TraesCS6D01G371900 chr2D 86.617 269 26 5 219 479 514999996 515000262 6.040000e-74 289.0
31 TraesCS6D01G371900 chr2D 86.617 269 26 5 219 479 515013343 515013609 6.040000e-74 289.0
32 TraesCS6D01G371900 chr2D 84.483 116 10 4 3899 4012 9340457 9340566 1.820000e-19 108.0
33 TraesCS6D01G371900 chr2B 82.746 568 85 9 4105 4668 752861469 752862027 1.190000e-135 494.0
34 TraesCS6D01G371900 chr2B 83.041 342 41 7 222 548 606750873 606751212 1.300000e-75 294.0
35 TraesCS6D01G371900 chr1D 80.448 670 111 16 4111 4773 475481614 475482270 1.190000e-135 494.0
36 TraesCS6D01G371900 chr1D 88.235 119 13 1 3899 4016 101294 101412 1.790000e-29 141.0
37 TraesCS6D01G371900 chr1D 90.141 71 1 6 3893 3961 334472138 334472204 2.370000e-13 87.9
38 TraesCS6D01G371900 chr7D 81.864 601 90 15 4105 4701 474362601 474363186 5.550000e-134 488.0
39 TraesCS6D01G371900 chr7D 84.375 128 8 9 3899 4015 498292242 498292368 1.090000e-21 115.0
40 TraesCS6D01G371900 chr5B 88.529 340 33 2 215 548 396326645 396326306 1.600000e-109 407.0
41 TraesCS6D01G371900 chr5B 91.111 135 7 4 1 135 396326778 396326649 1.360000e-40 178.0
42 TraesCS6D01G371900 chr5B 91.589 107 8 1 547 653 396326370 396326265 3.850000e-31 147.0
43 TraesCS6D01G371900 chr5B 93.506 77 5 0 3942 4018 33626312 33626236 1.090000e-21 115.0
44 TraesCS6D01G371900 chr1B 90.354 311 25 1 244 549 4949316 4949626 2.070000e-108 403.0
45 TraesCS6D01G371900 chr4A 77.875 687 83 31 4105 4755 66347740 66348393 3.510000e-96 363.0
46 TraesCS6D01G371900 chr2A 85.801 331 36 6 227 548 658994630 658994958 1.650000e-89 340.0
47 TraesCS6D01G371900 chrUn 86.617 269 26 5 219 479 269148143 269148409 6.040000e-74 289.0
48 TraesCS6D01G371900 chr5D 88.703 239 21 2 243 476 337531595 337531358 2.170000e-73 287.0
49 TraesCS6D01G371900 chr5D 91.176 136 8 3 1 136 337531738 337531607 1.060000e-41 182.0
50 TraesCS6D01G371900 chr5D 90.588 85 5 3 3942 4026 29498186 29498105 5.050000e-20 110.0
51 TraesCS6D01G371900 chr3B 95.946 74 3 0 3942 4015 729387515 729387588 2.330000e-23 121.0
52 TraesCS6D01G371900 chr1A 84.444 135 8 3 3899 4020 83819820 83819954 2.330000e-23 121.0
53 TraesCS6D01G371900 chr7B 81.356 118 11 2 3899 4015 6079545 6079438 8.510000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G371900 chr6D 457138050 457142822 4772 True 8815.000000 8815 100.000000 1 4773 1 chr6D.!!$R1 4772
1 TraesCS6D01G371900 chr6D 457129708 457133293 3585 True 205.866667 429 93.986667 3538 4059 3 chr6D.!!$R2 521
2 TraesCS6D01G371900 chr6B 695794287 695798459 4172 True 1097.700000 3362 95.520400 1 4054 5 chr6B.!!$R1 4053
3 TraesCS6D01G371900 chr5A 531465625 531469771 4146 False 989.666667 2231 93.804000 1 4773 6 chr5A.!!$F1 4772
4 TraesCS6D01G371900 chr6A 604107318 604109577 2259 True 1093.266667 1812 94.497333 1785 4059 3 chr6A.!!$R2 2274
5 TraesCS6D01G371900 chr6A 604114636 604115957 1321 True 852.000000 1485 95.111000 1 1790 2 chr6A.!!$R3 1789
6 TraesCS6D01G371900 chr6A 91858591 91859236 645 True 477.000000 477 80.480000 4105 4755 1 chr6A.!!$R1 650
7 TraesCS6D01G371900 chr3D 231737038 231737687 649 True 608.000000 608 83.788000 4105 4755 1 chr3D.!!$R1 650
8 TraesCS6D01G371900 chr3D 165765158 165765794 636 False 486.000000 486 80.799000 4105 4743 1 chr3D.!!$F1 638
9 TraesCS6D01G371900 chr3A 296919921 296920594 673 False 577.000000 577 82.819000 4105 4757 1 chr3A.!!$F1 652
10 TraesCS6D01G371900 chr2D 194646110 194646739 629 True 551.000000 551 82.716000 4104 4742 1 chr2D.!!$R1 638
11 TraesCS6D01G371900 chr2B 752861469 752862027 558 False 494.000000 494 82.746000 4105 4668 1 chr2B.!!$F2 563
12 TraesCS6D01G371900 chr1D 475481614 475482270 656 False 494.000000 494 80.448000 4111 4773 1 chr1D.!!$F3 662
13 TraesCS6D01G371900 chr7D 474362601 474363186 585 False 488.000000 488 81.864000 4105 4701 1 chr7D.!!$F1 596
14 TraesCS6D01G371900 chr5B 396326265 396326778 513 True 244.000000 407 90.409667 1 653 3 chr5B.!!$R2 652
15 TraesCS6D01G371900 chr4A 66347740 66348393 653 False 363.000000 363 77.875000 4105 4755 1 chr4A.!!$F1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.102120 CAGGTGCAACGGCTTTCAAA 59.898 50.0 0.00 0.00 41.91 2.69 F
1564 1970 0.176449 GGCAAATCAGGTGGGATTGC 59.824 55.0 0.00 0.00 37.55 3.56 F
1593 2004 0.108992 AGCTCAATTTGCATGCGTGG 60.109 50.0 14.09 0.00 0.00 4.94 F
1595 2006 0.458889 CTCAATTTGCATGCGTGGGG 60.459 55.0 14.09 2.57 0.00 4.96 F
3203 3750 1.178276 TCACTTTGTGCCGTGGTTTT 58.822 45.0 0.00 0.00 32.98 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1567 1973 0.607762 TGCAAATTGAGCTACCCGCA 60.608 50.000 0.00 0.00 42.61 5.69 R
3378 3931 3.066760 CACAAAAACTGTCCTGAACTCCC 59.933 47.826 0.00 0.00 35.47 4.30 R
3665 7411 3.872771 ACATTCAAGGTGTACGACGTTTT 59.127 39.130 5.50 0.00 30.06 2.43 R
3702 7451 5.301805 TGGATAAACTGATCGATACAGCTCA 59.698 40.000 18.73 4.76 38.74 4.26 R
4204 8001 1.942657 CATGTTGGATAGCCGTCTTGG 59.057 52.381 0.00 0.00 42.50 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.102120 CAGGTGCAACGGCTTTCAAA 59.898 50.000 0.00 0.00 41.91 2.69
139 140 9.914834 TGTTGTAATTGTATAGAATTAGGCCTT 57.085 29.630 12.58 0.00 30.21 4.35
141 142 8.918202 TGTAATTGTATAGAATTAGGCCTTGG 57.082 34.615 12.58 0.00 30.21 3.61
142 143 8.499406 TGTAATTGTATAGAATTAGGCCTTGGT 58.501 33.333 12.58 0.00 30.21 3.67
143 144 9.350951 GTAATTGTATAGAATTAGGCCTTGGTT 57.649 33.333 12.58 3.16 30.21 3.67
144 145 7.823745 ATTGTATAGAATTAGGCCTTGGTTG 57.176 36.000 12.58 0.00 0.00 3.77
145 146 5.130350 TGTATAGAATTAGGCCTTGGTTGC 58.870 41.667 12.58 0.00 0.00 4.17
146 147 2.603075 AGAATTAGGCCTTGGTTGCA 57.397 45.000 12.58 0.00 0.00 4.08
147 148 2.450476 AGAATTAGGCCTTGGTTGCAG 58.550 47.619 12.58 0.00 0.00 4.41
148 149 2.171003 GAATTAGGCCTTGGTTGCAGT 58.829 47.619 12.58 0.00 0.00 4.40
149 150 1.839424 ATTAGGCCTTGGTTGCAGTC 58.161 50.000 12.58 0.00 0.00 3.51
150 151 0.605319 TTAGGCCTTGGTTGCAGTCG 60.605 55.000 12.58 0.00 0.00 4.18
151 152 1.476845 TAGGCCTTGGTTGCAGTCGA 61.477 55.000 12.58 0.00 0.00 4.20
152 153 2.328099 GGCCTTGGTTGCAGTCGAG 61.328 63.158 0.00 0.00 0.00 4.04
153 154 1.301716 GCCTTGGTTGCAGTCGAGA 60.302 57.895 7.07 0.00 0.00 4.04
154 155 1.569479 GCCTTGGTTGCAGTCGAGAC 61.569 60.000 7.07 0.00 0.00 3.36
155 156 0.249868 CCTTGGTTGCAGTCGAGACA 60.250 55.000 5.99 0.00 0.00 3.41
156 157 1.609061 CCTTGGTTGCAGTCGAGACAT 60.609 52.381 5.99 0.00 0.00 3.06
157 158 1.728971 CTTGGTTGCAGTCGAGACATC 59.271 52.381 5.99 0.00 0.00 3.06
158 159 0.678950 TGGTTGCAGTCGAGACATCA 59.321 50.000 5.99 0.23 0.00 3.07
159 160 1.069978 TGGTTGCAGTCGAGACATCAA 59.930 47.619 5.99 6.13 0.00 2.57
160 161 1.461127 GGTTGCAGTCGAGACATCAAC 59.539 52.381 21.26 21.26 41.07 3.18
161 162 1.461127 GTTGCAGTCGAGACATCAACC 59.539 52.381 19.92 9.62 38.57 3.77
162 163 0.678950 TGCAGTCGAGACATCAACCA 59.321 50.000 5.99 0.00 0.00 3.67
163 164 1.337167 TGCAGTCGAGACATCAACCAG 60.337 52.381 5.99 0.00 0.00 4.00
164 165 2.001812 CAGTCGAGACATCAACCAGG 57.998 55.000 5.99 0.00 0.00 4.45
165 166 1.546029 CAGTCGAGACATCAACCAGGA 59.454 52.381 5.99 0.00 0.00 3.86
166 167 2.029020 CAGTCGAGACATCAACCAGGAA 60.029 50.000 5.99 0.00 0.00 3.36
167 168 2.232452 AGTCGAGACATCAACCAGGAAG 59.768 50.000 5.99 0.00 0.00 3.46
168 169 1.550524 TCGAGACATCAACCAGGAAGG 59.449 52.381 0.00 0.00 45.67 3.46
169 170 1.743996 GAGACATCAACCAGGAAGGC 58.256 55.000 0.00 0.00 43.14 4.35
170 171 1.003580 GAGACATCAACCAGGAAGGCA 59.996 52.381 0.00 0.00 43.14 4.75
171 172 1.168714 GACATCAACCAGGAAGGCAC 58.831 55.000 0.00 0.00 43.14 5.01
172 173 0.478072 ACATCAACCAGGAAGGCACA 59.522 50.000 0.00 0.00 43.14 4.57
173 174 1.133513 ACATCAACCAGGAAGGCACAA 60.134 47.619 0.00 0.00 43.14 3.33
174 175 1.542915 CATCAACCAGGAAGGCACAAG 59.457 52.381 0.00 0.00 43.14 3.16
175 176 0.178992 TCAACCAGGAAGGCACAAGG 60.179 55.000 0.00 0.00 43.14 3.61
176 177 1.531602 AACCAGGAAGGCACAAGGC 60.532 57.895 0.00 0.00 43.14 4.35
184 185 2.584835 AAGGCACAAGGCATTCTACA 57.415 45.000 0.00 0.00 44.45 2.74
185 186 2.162681 AAGGCACAAGGCATTCTACAC 58.837 47.619 0.00 0.00 44.45 2.90
186 187 3.141517 AAGGCACAAGGCATTCTACACC 61.142 50.000 0.00 0.00 44.45 4.16
187 188 1.533625 GCACAAGGCATTCTACACCA 58.466 50.000 0.00 0.00 43.97 4.17
188 189 1.470098 GCACAAGGCATTCTACACCAG 59.530 52.381 0.00 0.00 43.97 4.00
189 190 1.470098 CACAAGGCATTCTACACCAGC 59.530 52.381 0.00 0.00 0.00 4.85
190 191 1.098050 CAAGGCATTCTACACCAGCC 58.902 55.000 0.00 0.00 45.54 4.85
192 193 3.264574 GGCATTCTACACCAGCCAA 57.735 52.632 0.00 0.00 44.59 4.52
193 194 1.098050 GGCATTCTACACCAGCCAAG 58.902 55.000 0.00 0.00 44.59 3.61
194 195 1.098050 GCATTCTACACCAGCCAAGG 58.902 55.000 0.00 0.00 0.00 3.61
195 196 1.098050 CATTCTACACCAGCCAAGGC 58.902 55.000 2.02 2.02 42.33 4.35
196 197 0.698238 ATTCTACACCAGCCAAGGCA 59.302 50.000 14.40 0.00 44.88 4.75
197 198 0.250727 TTCTACACCAGCCAAGGCAC 60.251 55.000 14.40 0.00 44.88 5.01
198 199 1.675641 CTACACCAGCCAAGGCACC 60.676 63.158 14.40 0.00 44.88 5.01
199 200 3.545124 TACACCAGCCAAGGCACCG 62.545 63.158 14.40 2.28 44.88 4.94
206 207 3.283684 CCAAGGCACCGCACGAAA 61.284 61.111 0.00 0.00 0.00 3.46
207 208 2.625823 CCAAGGCACCGCACGAAAT 61.626 57.895 0.00 0.00 0.00 2.17
208 209 1.302383 CCAAGGCACCGCACGAAATA 61.302 55.000 0.00 0.00 0.00 1.40
209 210 0.519519 CAAGGCACCGCACGAAATAA 59.480 50.000 0.00 0.00 0.00 1.40
210 211 0.519961 AAGGCACCGCACGAAATAAC 59.480 50.000 0.00 0.00 0.00 1.89
213 214 1.326548 GGCACCGCACGAAATAACTAG 59.673 52.381 0.00 0.00 0.00 2.57
238 239 5.389859 AACGGAATTGAATTGCAGAATCA 57.610 34.783 10.00 0.00 0.00 2.57
241 242 7.099266 ACGGAATTGAATTGCAGAATCATAA 57.901 32.000 10.00 0.00 0.00 1.90
384 386 7.014711 TGCACTTAAAGACATATTTTCAACCCA 59.985 33.333 0.00 0.00 0.00 4.51
497 504 8.693542 AGAAACTGAAGATTTTGAAACAACAG 57.306 30.769 0.00 0.00 0.00 3.16
514 521 1.694169 AGATGGGTCCTTCGGCCAT 60.694 57.895 2.24 0.00 30.14 4.40
515 522 1.526917 GATGGGTCCTTCGGCCATG 60.527 63.158 2.24 0.00 28.15 3.66
516 523 1.983119 GATGGGTCCTTCGGCCATGA 61.983 60.000 2.24 0.00 28.15 3.07
517 524 1.987807 ATGGGTCCTTCGGCCATGAG 61.988 60.000 2.24 0.00 27.16 2.90
518 525 2.670148 GGGTCCTTCGGCCATGAGT 61.670 63.158 2.24 0.00 0.00 3.41
519 526 1.153349 GGTCCTTCGGCCATGAGTC 60.153 63.158 2.24 0.00 0.00 3.36
520 527 1.617947 GGTCCTTCGGCCATGAGTCT 61.618 60.000 2.24 0.00 0.00 3.24
521 528 1.112113 GTCCTTCGGCCATGAGTCTA 58.888 55.000 2.24 0.00 0.00 2.59
522 529 1.112113 TCCTTCGGCCATGAGTCTAC 58.888 55.000 2.24 0.00 0.00 2.59
523 530 1.115467 CCTTCGGCCATGAGTCTACT 58.885 55.000 2.24 0.00 0.00 2.57
524 531 2.092049 TCCTTCGGCCATGAGTCTACTA 60.092 50.000 2.24 0.00 0.00 1.82
525 532 2.034812 CCTTCGGCCATGAGTCTACTAC 59.965 54.545 2.24 0.00 0.00 2.73
526 533 2.430248 TCGGCCATGAGTCTACTACA 57.570 50.000 2.24 0.00 0.00 2.74
527 534 2.730382 TCGGCCATGAGTCTACTACAA 58.270 47.619 2.24 0.00 0.00 2.41
528 535 2.426024 TCGGCCATGAGTCTACTACAAC 59.574 50.000 2.24 0.00 0.00 3.32
529 536 2.165641 CGGCCATGAGTCTACTACAACA 59.834 50.000 2.24 0.00 0.00 3.33
530 537 3.368013 CGGCCATGAGTCTACTACAACAA 60.368 47.826 2.24 0.00 0.00 2.83
531 538 4.680708 CGGCCATGAGTCTACTACAACAAT 60.681 45.833 2.24 0.00 0.00 2.71
532 539 4.811557 GGCCATGAGTCTACTACAACAATC 59.188 45.833 0.00 0.00 0.00 2.67
533 540 5.395768 GGCCATGAGTCTACTACAACAATCT 60.396 44.000 0.00 0.00 0.00 2.40
534 541 5.751028 GCCATGAGTCTACTACAACAATCTC 59.249 44.000 0.00 0.00 0.00 2.75
535 542 6.406400 GCCATGAGTCTACTACAACAATCTCT 60.406 42.308 0.00 0.00 0.00 3.10
536 543 7.199766 CCATGAGTCTACTACAACAATCTCTC 58.800 42.308 0.00 0.00 0.00 3.20
537 544 7.068103 CCATGAGTCTACTACAACAATCTCTCT 59.932 40.741 0.00 0.00 0.00 3.10
538 545 7.384439 TGAGTCTACTACAACAATCTCTCTG 57.616 40.000 0.00 0.00 0.00 3.35
539 546 6.943146 TGAGTCTACTACAACAATCTCTCTGT 59.057 38.462 0.00 0.00 0.00 3.41
540 547 7.119992 TGAGTCTACTACAACAATCTCTCTGTC 59.880 40.741 0.00 0.00 0.00 3.51
541 548 6.376018 AGTCTACTACAACAATCTCTCTGTCC 59.624 42.308 0.00 0.00 0.00 4.02
542 549 6.376018 GTCTACTACAACAATCTCTCTGTCCT 59.624 42.308 0.00 0.00 0.00 3.85
543 550 6.948886 TCTACTACAACAATCTCTCTGTCCTT 59.051 38.462 0.00 0.00 0.00 3.36
544 551 6.031751 ACTACAACAATCTCTCTGTCCTTC 57.968 41.667 0.00 0.00 0.00 3.46
545 552 4.278975 ACAACAATCTCTCTGTCCTTCC 57.721 45.455 0.00 0.00 0.00 3.46
546 553 3.648067 ACAACAATCTCTCTGTCCTTCCA 59.352 43.478 0.00 0.00 0.00 3.53
547 554 4.288105 ACAACAATCTCTCTGTCCTTCCAT 59.712 41.667 0.00 0.00 0.00 3.41
548 555 5.222007 ACAACAATCTCTCTGTCCTTCCATT 60.222 40.000 0.00 0.00 0.00 3.16
549 556 5.511386 ACAATCTCTCTGTCCTTCCATTT 57.489 39.130 0.00 0.00 0.00 2.32
550 557 5.885465 ACAATCTCTCTGTCCTTCCATTTT 58.115 37.500 0.00 0.00 0.00 1.82
551 558 5.709164 ACAATCTCTCTGTCCTTCCATTTTG 59.291 40.000 0.00 0.00 0.00 2.44
552 559 4.292186 TCTCTCTGTCCTTCCATTTTGG 57.708 45.455 0.00 0.00 39.43 3.28
553 560 3.909995 TCTCTCTGTCCTTCCATTTTGGA 59.090 43.478 0.00 0.00 46.61 3.53
564 571 4.870123 TCCATTTTGGAACAACAGATGG 57.130 40.909 0.00 9.93 45.00 3.51
565 572 3.577848 TCCATTTTGGAACAACAGATGGG 59.422 43.478 13.60 0.00 45.00 4.00
566 573 4.939279 TCCATTTTGGAACAACAGATGGGT 60.939 41.667 13.60 0.00 45.00 4.51
567 574 6.734783 TCCATTTTGGAACAACAGATGGGTC 61.735 44.000 13.60 0.00 45.00 4.46
569 576 1.444933 TGGAACAACAGATGGGTCCT 58.555 50.000 0.00 0.00 37.91 3.85
570 577 1.780309 TGGAACAACAGATGGGTCCTT 59.220 47.619 0.00 0.00 37.91 3.36
571 578 2.224769 TGGAACAACAGATGGGTCCTTC 60.225 50.000 0.00 0.00 37.91 3.46
572 579 2.076863 GAACAACAGATGGGTCCTTCG 58.923 52.381 0.00 0.00 0.00 3.79
573 580 0.324943 ACAACAGATGGGTCCTTCGG 59.675 55.000 0.00 2.50 0.00 4.30
574 581 1.026718 CAACAGATGGGTCCTTCGGC 61.027 60.000 3.67 0.00 0.00 5.54
575 582 2.190578 CAGATGGGTCCTTCGGCC 59.809 66.667 0.00 0.00 0.00 6.13
576 583 2.285368 AGATGGGTCCTTCGGCCA 60.285 61.111 2.24 0.00 0.00 5.36
651 658 1.667830 CGCGAAGACCAGAAAGCCA 60.668 57.895 0.00 0.00 0.00 4.75
709 717 1.267806 CATGAGAACCACACTGCCAAC 59.732 52.381 0.00 0.00 0.00 3.77
720 728 1.002134 CTGCCAACTACCCAGGGTG 60.002 63.158 23.01 13.56 36.19 4.61
758 766 2.301009 GGGGAGACGACTAAAAACTCCA 59.699 50.000 0.00 0.00 46.00 3.86
759 767 3.586892 GGGAGACGACTAAAAACTCCAG 58.413 50.000 0.00 0.00 46.00 3.86
760 768 3.006644 GGGAGACGACTAAAAACTCCAGT 59.993 47.826 0.00 0.00 46.00 4.00
761 769 4.502777 GGGAGACGACTAAAAACTCCAGTT 60.503 45.833 0.00 0.00 46.00 3.16
762 770 5.279156 GGGAGACGACTAAAAACTCCAGTTA 60.279 44.000 0.00 0.00 46.00 2.24
763 771 6.396450 GGAGACGACTAAAAACTCCAGTTAT 58.604 40.000 0.00 0.00 44.31 1.89
833 843 2.300723 GCATATACCCGTGACCCATACA 59.699 50.000 0.00 0.00 0.00 2.29
850 860 1.797025 ACAGGAAGACGTAAAGCAGC 58.203 50.000 0.00 0.00 0.00 5.25
1013 1027 2.280119 GCACGCCACAGACAGACA 60.280 61.111 0.00 0.00 0.00 3.41
1486 1520 4.901849 TCTGATTCTGATTCCCTTATCGGT 59.098 41.667 0.00 0.00 33.50 4.69
1564 1970 0.176449 GGCAAATCAGGTGGGATTGC 59.824 55.000 0.00 0.00 37.55 3.56
1567 1973 2.027837 GCAAATCAGGTGGGATTGCTTT 60.028 45.455 0.00 0.00 37.55 3.51
1568 1974 3.592059 CAAATCAGGTGGGATTGCTTTG 58.408 45.455 0.00 0.00 37.55 2.77
1570 1976 1.213537 CAGGTGGGATTGCTTTGCG 59.786 57.895 0.00 0.00 0.00 4.85
1571 1977 1.978617 AGGTGGGATTGCTTTGCGG 60.979 57.895 0.00 0.00 0.00 5.69
1593 2004 0.108992 AGCTCAATTTGCATGCGTGG 60.109 50.000 14.09 0.00 0.00 4.94
1595 2006 0.458889 CTCAATTTGCATGCGTGGGG 60.459 55.000 14.09 2.57 0.00 4.96
1621 2032 6.646653 TGCTCTATTCAGTTCAGTTAGTTGTG 59.353 38.462 0.00 0.00 0.00 3.33
1634 2045 5.696270 CAGTTAGTTGTGCAGTTCACTATGA 59.304 40.000 0.00 0.00 45.81 2.15
1721 2132 2.899256 ACCATTACCATGCAGTTGCTTT 59.101 40.909 5.62 0.00 42.66 3.51
1934 2352 7.230222 GCGATTACAATATGCAGTTATCTGTC 58.770 38.462 0.00 0.00 43.05 3.51
1935 2353 7.116948 GCGATTACAATATGCAGTTATCTGTCT 59.883 37.037 0.00 0.00 43.05 3.41
1936 2354 8.982685 CGATTACAATATGCAGTTATCTGTCTT 58.017 33.333 0.00 0.00 43.05 3.01
1947 2365 6.088616 GCAGTTATCTGTCTTTTGCAACATTC 59.911 38.462 0.00 0.00 43.05 2.67
1999 2417 1.540267 TCAGTACGTCTTGCTCTGTCC 59.460 52.381 0.00 0.00 0.00 4.02
2017 2435 7.587037 TCTGTCCAACTTTTTGATGAAATCT 57.413 32.000 0.00 0.00 45.81 2.40
2047 2465 4.889409 TGCAAGGAATTCCCATACATCTTC 59.111 41.667 21.22 2.15 37.41 2.87
2094 2513 6.363577 AGCCATAAATATCGTGTCACAAAG 57.636 37.500 3.42 0.00 0.00 2.77
2172 2600 4.521146 ACTTCTTAATGCCATCAGTCCTG 58.479 43.478 0.00 0.00 0.00 3.86
2299 2737 4.944962 TCAGATTTGGATGTTGCTTACG 57.055 40.909 0.00 0.00 0.00 3.18
2455 2894 7.080099 GCAATTATTAGTGGCATCTGTATGTG 58.920 38.462 0.00 0.00 35.38 3.21
2784 3317 3.459828 TCTCCCCAATCCTTGTGTCATA 58.540 45.455 0.00 0.00 0.00 2.15
2913 3455 9.672673 ACTTGATTAGTCATATATTGGTATGGC 57.327 33.333 0.00 0.00 37.03 4.40
2936 3478 5.048991 GCGAAGTGAAATAACTTTCCAGGAA 60.049 40.000 0.00 0.00 40.48 3.36
2955 3497 6.594788 AGGAACTGTAATGTTGCAATCATT 57.405 33.333 22.19 22.19 40.08 2.57
2958 3500 8.584157 AGGAACTGTAATGTTGCAATCATTTTA 58.416 29.630 23.11 15.26 40.08 1.52
3171 3713 8.618677 CCATTATGTAGCTTAGCATATGAATGG 58.381 37.037 18.58 18.58 32.16 3.16
3172 3714 7.615582 TTATGTAGCTTAGCATATGAATGGC 57.384 36.000 6.97 5.08 33.38 4.40
3196 3743 3.370978 CCTATACAGTTCACTTTGTGCCG 59.629 47.826 0.00 0.00 32.98 5.69
3203 3750 1.178276 TCACTTTGTGCCGTGGTTTT 58.822 45.000 0.00 0.00 32.98 2.43
3333 3886 5.984926 TGAATCAAAAGGAATTGTGCTTGTC 59.015 36.000 0.00 0.00 35.28 3.18
3378 3931 9.408069 CCTTAATTCTAGTACTTACATAAGCCG 57.592 37.037 0.00 0.00 36.79 5.52
3665 7411 3.498777 CGCCGAGAGTAGAATATGACAGA 59.501 47.826 0.00 0.00 0.00 3.41
3803 7594 0.316204 GCAGCTTCAAGCATGGTGTT 59.684 50.000 13.10 0.00 45.56 3.32
3851 7642 1.454201 TTATGGCCGTGAAATTCGCA 58.546 45.000 8.05 0.00 0.00 5.10
3861 7653 3.782369 CGTGAAATTCGCACTCATGAATG 59.218 43.478 7.35 0.00 35.13 2.67
3869 7661 2.603892 CGCACTCATGAATGCCTAATGC 60.604 50.000 22.38 8.66 38.69 3.56
3870 7662 2.603892 GCACTCATGAATGCCTAATGCG 60.604 50.000 18.17 0.00 45.60 4.73
3896 7689 7.824289 GCATATATAGCTGGTGACTGGAATTTA 59.176 37.037 0.00 0.00 0.00 1.40
3897 7690 9.376075 CATATATAGCTGGTGACTGGAATTTAG 57.624 37.037 0.00 0.00 0.00 1.85
3898 7691 5.700402 ATAGCTGGTGACTGGAATTTAGT 57.300 39.130 0.00 0.00 0.00 2.24
3899 7692 6.808321 ATAGCTGGTGACTGGAATTTAGTA 57.192 37.500 0.00 0.00 0.00 1.82
3900 7693 4.833390 AGCTGGTGACTGGAATTTAGTAC 58.167 43.478 0.00 0.00 0.00 2.73
3901 7694 4.532521 AGCTGGTGACTGGAATTTAGTACT 59.467 41.667 0.00 0.00 0.00 2.73
3902 7695 4.870991 GCTGGTGACTGGAATTTAGTACTC 59.129 45.833 0.00 0.00 0.00 2.59
3903 7696 5.416271 TGGTGACTGGAATTTAGTACTCC 57.584 43.478 0.00 0.00 0.00 3.85
3904 7697 4.224370 TGGTGACTGGAATTTAGTACTCCC 59.776 45.833 0.00 0.00 0.00 4.30
3905 7698 4.470304 GGTGACTGGAATTTAGTACTCCCT 59.530 45.833 0.00 0.00 0.00 4.20
3906 7699 5.395435 GGTGACTGGAATTTAGTACTCCCTC 60.395 48.000 0.00 0.00 0.00 4.30
3907 7700 5.187186 GTGACTGGAATTTAGTACTCCCTCA 59.813 44.000 0.00 0.00 0.00 3.86
3908 7701 5.964477 TGACTGGAATTTAGTACTCCCTCAT 59.036 40.000 0.00 0.00 0.00 2.90
3909 7702 7.069578 GTGACTGGAATTTAGTACTCCCTCATA 59.930 40.741 0.00 0.00 0.00 2.15
3910 7703 7.069578 TGACTGGAATTTAGTACTCCCTCATAC 59.930 40.741 0.00 0.00 0.00 2.39
3911 7704 6.326843 ACTGGAATTTAGTACTCCCTCATACC 59.673 42.308 0.00 0.00 0.00 2.73
3912 7705 6.206787 TGGAATTTAGTACTCCCTCATACCA 58.793 40.000 0.00 0.00 0.00 3.25
3913 7706 6.674861 TGGAATTTAGTACTCCCTCATACCAA 59.325 38.462 0.00 0.00 0.00 3.67
3914 7707 7.183112 TGGAATTTAGTACTCCCTCATACCAAA 59.817 37.037 0.00 0.00 0.00 3.28
3915 7708 8.050930 GGAATTTAGTACTCCCTCATACCAAAA 58.949 37.037 0.00 0.00 0.00 2.44
3916 7709 9.628500 GAATTTAGTACTCCCTCATACCAAAAT 57.372 33.333 0.00 0.00 0.00 1.82
3920 7713 7.750947 AGTACTCCCTCATACCAAAATAAGT 57.249 36.000 0.00 0.00 0.00 2.24
3921 7714 7.565680 AGTACTCCCTCATACCAAAATAAGTG 58.434 38.462 0.00 0.00 0.00 3.16
3922 7715 6.636454 ACTCCCTCATACCAAAATAAGTGA 57.364 37.500 0.00 0.00 0.00 3.41
3923 7716 6.415573 ACTCCCTCATACCAAAATAAGTGAC 58.584 40.000 0.00 0.00 0.00 3.67
3924 7717 6.215636 ACTCCCTCATACCAAAATAAGTGACT 59.784 38.462 0.00 0.00 0.00 3.41
3925 7718 6.650120 TCCCTCATACCAAAATAAGTGACTC 58.350 40.000 0.00 0.00 0.00 3.36
3926 7719 6.214615 TCCCTCATACCAAAATAAGTGACTCA 59.785 38.462 0.00 0.00 0.00 3.41
3927 7720 6.884295 CCCTCATACCAAAATAAGTGACTCAA 59.116 38.462 0.00 0.00 0.00 3.02
3928 7721 7.148239 CCCTCATACCAAAATAAGTGACTCAAC 60.148 40.741 0.00 0.00 0.00 3.18
3929 7722 7.607991 CCTCATACCAAAATAAGTGACTCAACT 59.392 37.037 0.00 0.00 0.00 3.16
3930 7723 8.918202 TCATACCAAAATAAGTGACTCAACTT 57.082 30.769 0.00 0.00 42.89 2.66
3931 7724 9.349713 TCATACCAAAATAAGTGACTCAACTTT 57.650 29.630 0.00 0.00 40.77 2.66
3932 7725 9.398170 CATACCAAAATAAGTGACTCAACTTTG 57.602 33.333 0.00 0.00 40.77 2.77
3933 7726 7.404671 ACCAAAATAAGTGACTCAACTTTGT 57.595 32.000 0.00 0.00 40.77 2.83
3934 7727 8.514330 ACCAAAATAAGTGACTCAACTTTGTA 57.486 30.769 0.00 0.00 40.77 2.41
3935 7728 8.403236 ACCAAAATAAGTGACTCAACTTTGTAC 58.597 33.333 0.00 0.00 40.77 2.90
3936 7729 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
3942 7735 7.772332 AGTGACTCAACTTTGTACTAACTTG 57.228 36.000 0.00 0.00 0.00 3.16
3943 7736 7.553334 AGTGACTCAACTTTGTACTAACTTGA 58.447 34.615 10.10 10.10 0.00 3.02
3944 7737 7.491696 AGTGACTCAACTTTGTACTAACTTGAC 59.508 37.037 7.61 2.63 0.00 3.18
3945 7738 7.491696 GTGACTCAACTTTGTACTAACTTGACT 59.508 37.037 7.61 1.87 0.00 3.41
3946 7739 7.705325 TGACTCAACTTTGTACTAACTTGACTC 59.295 37.037 7.61 8.72 0.00 3.36
3947 7740 7.553334 ACTCAACTTTGTACTAACTTGACTCA 58.447 34.615 7.61 0.00 0.00 3.41
3948 7741 8.038944 ACTCAACTTTGTACTAACTTGACTCAA 58.961 33.333 7.61 0.00 0.00 3.02
3949 7742 8.193250 TCAACTTTGTACTAACTTGACTCAAC 57.807 34.615 7.61 0.00 0.00 3.18
3950 7743 8.038944 TCAACTTTGTACTAACTTGACTCAACT 58.961 33.333 7.61 0.00 0.00 3.16
3951 7744 8.665685 CAACTTTGTACTAACTTGACTCAACTT 58.334 33.333 0.00 0.00 0.00 2.66
3952 7745 8.788325 ACTTTGTACTAACTTGACTCAACTTT 57.212 30.769 0.00 0.00 0.00 2.66
3953 7746 8.665685 ACTTTGTACTAACTTGACTCAACTTTG 58.334 33.333 0.00 0.00 0.00 2.77
3954 7747 8.556213 TTTGTACTAACTTGACTCAACTTTGT 57.444 30.769 0.00 0.00 0.00 2.83
3955 7748 9.656040 TTTGTACTAACTTGACTCAACTTTGTA 57.344 29.630 0.00 0.00 0.00 2.41
3956 7749 8.638685 TGTACTAACTTGACTCAACTTTGTAC 57.361 34.615 18.23 18.23 33.77 2.90
3957 7750 8.472413 TGTACTAACTTGACTCAACTTTGTACT 58.528 33.333 21.66 1.09 34.00 2.73
3958 7751 9.956720 GTACTAACTTGACTCAACTTTGTACTA 57.043 33.333 18.01 0.00 32.34 1.82
3960 7753 9.310716 ACTAACTTGACTCAACTTTGTACTAAC 57.689 33.333 0.00 0.00 0.00 2.34
3961 7754 9.530633 CTAACTTGACTCAACTTTGTACTAACT 57.469 33.333 0.00 0.00 0.00 2.24
3962 7755 8.788325 AACTTGACTCAACTTTGTACTAACTT 57.212 30.769 0.00 0.00 0.00 2.66
3963 7756 8.788325 ACTTGACTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 0.00 2.66
3964 7757 9.880157 ACTTGACTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 0.00 1.85
3992 7785 9.726438 ACTAAAGCAAGTATAAAGTTGAGTCAT 57.274 29.630 0.00 0.00 38.14 3.06
4006 7799 7.174107 AGTTGAGTCATTTATTTTGGGATGG 57.826 36.000 0.00 0.00 0.00 3.51
4007 7800 6.953520 AGTTGAGTCATTTATTTTGGGATGGA 59.046 34.615 0.00 0.00 0.00 3.41
4008 7801 7.123247 AGTTGAGTCATTTATTTTGGGATGGAG 59.877 37.037 0.00 0.00 0.00 3.86
4009 7802 5.893255 TGAGTCATTTATTTTGGGATGGAGG 59.107 40.000 0.00 0.00 0.00 4.30
4010 7803 5.211201 AGTCATTTATTTTGGGATGGAGGG 58.789 41.667 0.00 0.00 0.00 4.30
4063 7856 6.748333 AAACCATAGATGATGTTGTCACTG 57.252 37.500 0.00 0.00 40.28 3.66
4066 7859 2.865119 AGATGATGTTGTCACTGGCA 57.135 45.000 0.00 0.00 40.28 4.92
4078 7871 2.620115 GTCACTGGCATCATATTGGTGG 59.380 50.000 0.00 0.00 0.00 4.61
4084 7877 3.023119 GGCATCATATTGGTGGTGTTGA 58.977 45.455 0.00 0.00 32.75 3.18
4095 7888 3.578272 GTGTTGAACGCCCACGCA 61.578 61.111 0.00 0.00 45.53 5.24
4211 8008 4.417426 ACTAATATTCCACCCCAAGACG 57.583 45.455 0.00 0.00 0.00 4.18
4431 8237 4.238514 CACTACAAAGCACCAGTCTCTAC 58.761 47.826 0.00 0.00 0.00 2.59
4582 8391 8.902806 GTGACTATTCATCATATCCCAACAAAA 58.097 33.333 0.00 0.00 33.11 2.44
4596 8405 4.511082 CCCAACAAAACACATCCACAAATC 59.489 41.667 0.00 0.00 0.00 2.17
4668 8477 9.097257 GTATTGAAGATCAAAGAGAAAGAGAGG 57.903 37.037 0.00 0.00 40.12 3.69
4743 8577 1.985159 TCATGGAGGTAGCAAGGTTGT 59.015 47.619 0.00 0.00 0.00 3.32
4744 8578 2.086869 CATGGAGGTAGCAAGGTTGTG 58.913 52.381 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.802816 GAGTGCAGTCGAGAATGTGTTT 59.197 45.455 5.63 0.00 0.00 2.83
136 137 0.249868 TGTCTCGACTGCAACCAAGG 60.250 55.000 0.00 0.00 0.00 3.61
137 138 1.728971 GATGTCTCGACTGCAACCAAG 59.271 52.381 0.00 0.00 0.00 3.61
139 140 0.678950 TGATGTCTCGACTGCAACCA 59.321 50.000 0.00 0.00 0.00 3.67
140 141 1.461127 GTTGATGTCTCGACTGCAACC 59.539 52.381 17.04 6.73 38.66 3.77
141 142 1.461127 GGTTGATGTCTCGACTGCAAC 59.539 52.381 18.43 18.43 41.11 4.17
142 143 1.069978 TGGTTGATGTCTCGACTGCAA 59.930 47.619 0.00 0.81 36.23 4.08
143 144 0.678950 TGGTTGATGTCTCGACTGCA 59.321 50.000 0.00 0.00 36.23 4.41
144 145 1.354040 CTGGTTGATGTCTCGACTGC 58.646 55.000 0.00 0.00 36.23 4.40
145 146 1.546029 TCCTGGTTGATGTCTCGACTG 59.454 52.381 0.00 0.00 36.23 3.51
146 147 1.924731 TCCTGGTTGATGTCTCGACT 58.075 50.000 0.00 0.00 36.23 4.18
147 148 2.611518 CTTCCTGGTTGATGTCTCGAC 58.388 52.381 0.00 0.00 35.35 4.20
148 149 1.550524 CCTTCCTGGTTGATGTCTCGA 59.449 52.381 0.00 0.00 0.00 4.04
149 150 2.009042 GCCTTCCTGGTTGATGTCTCG 61.009 57.143 0.00 0.00 38.35 4.04
150 151 1.003580 TGCCTTCCTGGTTGATGTCTC 59.996 52.381 0.00 0.00 38.35 3.36
151 152 1.067295 TGCCTTCCTGGTTGATGTCT 58.933 50.000 0.00 0.00 38.35 3.41
152 153 1.168714 GTGCCTTCCTGGTTGATGTC 58.831 55.000 0.00 0.00 38.35 3.06
153 154 0.478072 TGTGCCTTCCTGGTTGATGT 59.522 50.000 0.00 0.00 38.35 3.06
154 155 1.542915 CTTGTGCCTTCCTGGTTGATG 59.457 52.381 0.00 0.00 38.35 3.07
155 156 1.548582 CCTTGTGCCTTCCTGGTTGAT 60.549 52.381 0.00 0.00 38.35 2.57
156 157 0.178992 CCTTGTGCCTTCCTGGTTGA 60.179 55.000 0.00 0.00 38.35 3.18
157 158 1.809567 GCCTTGTGCCTTCCTGGTTG 61.810 60.000 0.00 0.00 38.35 3.77
158 159 1.531602 GCCTTGTGCCTTCCTGGTT 60.532 57.895 0.00 0.00 38.35 3.67
159 160 2.085343 ATGCCTTGTGCCTTCCTGGT 62.085 55.000 0.00 0.00 40.16 4.00
160 161 0.901580 AATGCCTTGTGCCTTCCTGG 60.902 55.000 0.00 0.00 40.16 4.45
161 162 0.529378 GAATGCCTTGTGCCTTCCTG 59.471 55.000 0.00 0.00 38.30 3.86
162 163 0.407139 AGAATGCCTTGTGCCTTCCT 59.593 50.000 0.00 0.00 43.32 3.36
163 164 1.745653 GTAGAATGCCTTGTGCCTTCC 59.254 52.381 0.00 0.00 43.32 3.46
164 165 2.162408 GTGTAGAATGCCTTGTGCCTTC 59.838 50.000 0.00 0.00 42.82 3.46
165 166 2.162681 GTGTAGAATGCCTTGTGCCTT 58.837 47.619 0.00 0.00 40.16 4.35
166 167 1.614317 GGTGTAGAATGCCTTGTGCCT 60.614 52.381 0.00 0.00 40.16 4.75
167 168 0.811281 GGTGTAGAATGCCTTGTGCC 59.189 55.000 0.00 0.00 40.16 5.01
168 169 1.470098 CTGGTGTAGAATGCCTTGTGC 59.530 52.381 0.00 0.00 41.77 4.57
169 170 1.470098 GCTGGTGTAGAATGCCTTGTG 59.530 52.381 0.00 0.00 0.00 3.33
170 171 1.614317 GGCTGGTGTAGAATGCCTTGT 60.614 52.381 0.00 0.00 40.36 3.16
171 172 1.098050 GGCTGGTGTAGAATGCCTTG 58.902 55.000 0.00 0.00 40.36 3.61
172 173 0.698238 TGGCTGGTGTAGAATGCCTT 59.302 50.000 0.00 0.00 43.57 4.35
173 174 0.698238 TTGGCTGGTGTAGAATGCCT 59.302 50.000 0.00 0.00 43.57 4.75
174 175 1.098050 CTTGGCTGGTGTAGAATGCC 58.902 55.000 0.00 0.00 43.49 4.40
175 176 1.098050 CCTTGGCTGGTGTAGAATGC 58.902 55.000 0.00 0.00 0.00 3.56
176 177 1.098050 GCCTTGGCTGGTGTAGAATG 58.902 55.000 4.11 0.00 0.00 2.67
177 178 0.698238 TGCCTTGGCTGGTGTAGAAT 59.302 50.000 13.18 0.00 0.00 2.40
178 179 0.250727 GTGCCTTGGCTGGTGTAGAA 60.251 55.000 13.18 0.00 0.00 2.10
179 180 1.374947 GTGCCTTGGCTGGTGTAGA 59.625 57.895 13.18 0.00 0.00 2.59
180 181 1.675641 GGTGCCTTGGCTGGTGTAG 60.676 63.158 13.18 0.00 0.00 2.74
181 182 2.434331 GGTGCCTTGGCTGGTGTA 59.566 61.111 13.18 0.00 0.00 2.90
182 183 4.954970 CGGTGCCTTGGCTGGTGT 62.955 66.667 13.18 0.00 0.00 4.16
189 190 1.302383 TATTTCGTGCGGTGCCTTGG 61.302 55.000 0.00 0.00 0.00 3.61
190 191 0.519519 TTATTTCGTGCGGTGCCTTG 59.480 50.000 0.00 0.00 0.00 3.61
191 192 0.519961 GTTATTTCGTGCGGTGCCTT 59.480 50.000 0.00 0.00 0.00 4.35
192 193 0.321298 AGTTATTTCGTGCGGTGCCT 60.321 50.000 0.00 0.00 0.00 4.75
193 194 1.326548 CTAGTTATTTCGTGCGGTGCC 59.673 52.381 0.00 0.00 0.00 5.01
194 195 1.267383 GCTAGTTATTTCGTGCGGTGC 60.267 52.381 0.00 0.00 0.00 5.01
195 196 2.268298 AGCTAGTTATTTCGTGCGGTG 58.732 47.619 0.00 0.00 0.00 4.94
196 197 2.667473 AGCTAGTTATTTCGTGCGGT 57.333 45.000 0.00 0.00 0.00 5.68
197 198 3.061403 CGTTAGCTAGTTATTTCGTGCGG 60.061 47.826 0.00 0.00 0.00 5.69
198 199 3.061403 CCGTTAGCTAGTTATTTCGTGCG 60.061 47.826 0.00 0.00 0.00 5.34
199 200 4.107622 TCCGTTAGCTAGTTATTTCGTGC 58.892 43.478 0.00 0.00 0.00 5.34
200 201 6.823678 ATTCCGTTAGCTAGTTATTTCGTG 57.176 37.500 0.00 0.00 0.00 4.35
201 202 7.037438 TCAATTCCGTTAGCTAGTTATTTCGT 58.963 34.615 0.00 0.00 0.00 3.85
202 203 7.459394 TCAATTCCGTTAGCTAGTTATTTCG 57.541 36.000 0.00 0.00 0.00 3.46
205 206 8.129211 GCAATTCAATTCCGTTAGCTAGTTATT 58.871 33.333 0.00 0.00 0.00 1.40
206 207 7.282224 TGCAATTCAATTCCGTTAGCTAGTTAT 59.718 33.333 0.00 0.00 0.00 1.89
207 208 6.596106 TGCAATTCAATTCCGTTAGCTAGTTA 59.404 34.615 0.00 0.00 0.00 2.24
208 209 5.414454 TGCAATTCAATTCCGTTAGCTAGTT 59.586 36.000 0.00 0.00 0.00 2.24
209 210 4.941263 TGCAATTCAATTCCGTTAGCTAGT 59.059 37.500 0.00 0.00 0.00 2.57
210 211 5.294306 TCTGCAATTCAATTCCGTTAGCTAG 59.706 40.000 0.00 0.00 0.00 3.42
213 214 4.355543 TCTGCAATTCAATTCCGTTAGC 57.644 40.909 0.00 0.00 0.00 3.09
238 239 2.618053 CTTCTCGACGGCCTTGTTTAT 58.382 47.619 0.00 0.00 0.00 1.40
241 242 1.668151 GCTTCTCGACGGCCTTGTT 60.668 57.895 0.00 0.00 0.00 2.83
368 369 5.070770 TGCACATGGGTTGAAAATATGTC 57.929 39.130 0.00 0.00 29.44 3.06
384 386 5.997746 TCTTAAGCTTGTAAGTTCTGCACAT 59.002 36.000 9.86 0.00 33.55 3.21
514 521 6.943146 ACAGAGAGATTGTTGTAGTAGACTCA 59.057 38.462 0.00 0.00 0.00 3.41
515 522 7.385778 ACAGAGAGATTGTTGTAGTAGACTC 57.614 40.000 0.00 0.00 0.00 3.36
516 523 6.376018 GGACAGAGAGATTGTTGTAGTAGACT 59.624 42.308 0.00 0.00 0.00 3.24
517 524 6.376018 AGGACAGAGAGATTGTTGTAGTAGAC 59.624 42.308 0.00 0.00 0.00 2.59
518 525 6.486056 AGGACAGAGAGATTGTTGTAGTAGA 58.514 40.000 0.00 0.00 0.00 2.59
519 526 6.767524 AGGACAGAGAGATTGTTGTAGTAG 57.232 41.667 0.00 0.00 0.00 2.57
520 527 6.153000 GGAAGGACAGAGAGATTGTTGTAGTA 59.847 42.308 0.00 0.00 0.00 1.82
521 528 5.046950 GGAAGGACAGAGAGATTGTTGTAGT 60.047 44.000 0.00 0.00 0.00 2.73
522 529 5.047021 TGGAAGGACAGAGAGATTGTTGTAG 60.047 44.000 0.00 0.00 0.00 2.74
523 530 4.838423 TGGAAGGACAGAGAGATTGTTGTA 59.162 41.667 0.00 0.00 0.00 2.41
524 531 3.648067 TGGAAGGACAGAGAGATTGTTGT 59.352 43.478 0.00 0.00 0.00 3.32
525 532 4.277515 TGGAAGGACAGAGAGATTGTTG 57.722 45.455 0.00 0.00 0.00 3.33
526 533 5.511386 AATGGAAGGACAGAGAGATTGTT 57.489 39.130 0.00 0.00 0.00 2.83
527 534 5.511386 AAATGGAAGGACAGAGAGATTGT 57.489 39.130 0.00 0.00 0.00 2.71
528 535 5.125097 CCAAAATGGAAGGACAGAGAGATTG 59.875 44.000 0.00 0.00 40.96 2.67
529 536 5.014544 TCCAAAATGGAAGGACAGAGAGATT 59.985 40.000 0.00 0.00 45.00 2.40
530 537 4.537688 TCCAAAATGGAAGGACAGAGAGAT 59.462 41.667 0.00 0.00 45.00 2.75
531 538 3.909995 TCCAAAATGGAAGGACAGAGAGA 59.090 43.478 0.00 0.00 45.00 3.10
532 539 4.292186 TCCAAAATGGAAGGACAGAGAG 57.708 45.455 0.00 0.00 45.00 3.20
543 550 3.577848 CCCATCTGTTGTTCCAAAATGGA 59.422 43.478 12.36 0.00 46.61 3.41
544 551 3.324556 ACCCATCTGTTGTTCCAAAATGG 59.675 43.478 0.00 0.00 39.43 3.16
545 552 4.559153 GACCCATCTGTTGTTCCAAAATG 58.441 43.478 0.00 0.00 0.00 2.32
546 553 3.578282 GGACCCATCTGTTGTTCCAAAAT 59.422 43.478 0.00 0.00 0.00 1.82
547 554 2.962421 GGACCCATCTGTTGTTCCAAAA 59.038 45.455 0.00 0.00 0.00 2.44
548 555 2.176798 AGGACCCATCTGTTGTTCCAAA 59.823 45.455 0.00 0.00 30.95 3.28
549 556 1.780309 AGGACCCATCTGTTGTTCCAA 59.220 47.619 0.00 0.00 30.95 3.53
550 557 1.444933 AGGACCCATCTGTTGTTCCA 58.555 50.000 0.00 0.00 30.95 3.53
551 558 2.437413 GAAGGACCCATCTGTTGTTCC 58.563 52.381 0.00 0.00 0.00 3.62
552 559 2.076863 CGAAGGACCCATCTGTTGTTC 58.923 52.381 0.00 0.00 0.00 3.18
553 560 2.185004 CGAAGGACCCATCTGTTGTT 57.815 50.000 0.00 0.00 0.00 2.83
554 561 3.935993 CGAAGGACCCATCTGTTGT 57.064 52.632 0.00 0.00 0.00 3.32
568 575 1.622607 TAGTGGACCCATGGCCGAAG 61.623 60.000 6.09 0.00 0.00 3.79
569 576 1.613928 TAGTGGACCCATGGCCGAA 60.614 57.895 6.09 0.00 0.00 4.30
570 577 2.039787 TAGTGGACCCATGGCCGA 59.960 61.111 6.09 0.00 0.00 5.54
571 578 2.189521 GTAGTGGACCCATGGCCG 59.810 66.667 6.09 0.00 0.00 6.13
572 579 0.679960 GTTGTAGTGGACCCATGGCC 60.680 60.000 6.09 3.46 0.00 5.36
573 580 0.037590 TGTTGTAGTGGACCCATGGC 59.962 55.000 6.09 0.00 0.00 4.40
574 581 2.577606 TTGTTGTAGTGGACCCATGG 57.422 50.000 4.14 4.14 0.00 3.66
575 582 3.941483 GAGATTGTTGTAGTGGACCCATG 59.059 47.826 0.00 0.00 0.00 3.66
576 583 3.846588 AGAGATTGTTGTAGTGGACCCAT 59.153 43.478 0.00 0.00 0.00 4.00
709 717 2.172505 TGCATTATCACACCCTGGGTAG 59.827 50.000 20.09 14.44 32.11 3.18
720 728 0.381801 CCCAGCCGTTGCATTATCAC 59.618 55.000 0.00 0.00 41.13 3.06
758 766 2.190578 GCCTGGCGCCTGATAACT 59.809 61.111 32.43 0.00 0.00 2.24
833 843 3.090037 TCTAGCTGCTTTACGTCTTCCT 58.910 45.455 7.79 0.00 0.00 3.36
850 860 6.637254 CACGCACAACTATTACAGGTATCTAG 59.363 42.308 0.00 0.00 0.00 2.43
1139 1153 2.362503 AGGACATGGAGACGGCGA 60.363 61.111 16.62 0.00 0.00 5.54
1486 1520 1.817520 CCACAAGCACCGTCACACA 60.818 57.895 0.00 0.00 0.00 3.72
1549 1954 1.551883 GCAAAGCAATCCCACCTGATT 59.448 47.619 0.00 0.00 35.36 2.57
1564 1970 2.867429 CAAATTGAGCTACCCGCAAAG 58.133 47.619 0.00 0.00 42.61 2.77
1567 1973 0.607762 TGCAAATTGAGCTACCCGCA 60.608 50.000 0.00 0.00 42.61 5.69
1568 1974 0.740737 ATGCAAATTGAGCTACCCGC 59.259 50.000 0.00 0.00 39.57 6.13
1570 1976 1.534595 CGCATGCAAATTGAGCTACCC 60.535 52.381 19.57 0.00 0.00 3.69
1571 1977 1.133025 ACGCATGCAAATTGAGCTACC 59.867 47.619 19.57 0.00 0.00 3.18
1593 2004 3.618690 ACTGAACTGAATAGAGCACCC 57.381 47.619 0.00 0.00 0.00 4.61
1595 2006 6.647067 ACAACTAACTGAACTGAATAGAGCAC 59.353 38.462 0.00 0.00 0.00 4.40
1601 2012 6.288294 ACTGCACAACTAACTGAACTGAATA 58.712 36.000 0.00 0.00 0.00 1.75
1621 2032 4.730035 GCAATTGAGCTCATAGTGAACTGC 60.730 45.833 19.04 9.45 0.00 4.40
1634 2045 4.757594 TGAAAACAAAGTGCAATTGAGCT 58.242 34.783 17.67 2.87 34.99 4.09
1704 2115 5.782893 ACTTTAAAGCAACTGCATGGTAA 57.217 34.783 15.24 0.00 45.16 2.85
1721 2132 7.042950 CCAAATCATGGCATGAATCAACTTTA 58.957 34.615 31.81 7.43 43.80 1.85
1934 2352 8.514594 TCTAAATGAGGTAGAATGTTGCAAAAG 58.485 33.333 0.00 0.00 0.00 2.27
1935 2353 8.402798 TCTAAATGAGGTAGAATGTTGCAAAA 57.597 30.769 0.00 0.00 0.00 2.44
1936 2354 7.994425 TCTAAATGAGGTAGAATGTTGCAAA 57.006 32.000 0.00 0.00 0.00 3.68
1937 2355 7.994425 TTCTAAATGAGGTAGAATGTTGCAA 57.006 32.000 0.00 0.00 33.61 4.08
1938 2356 7.094377 GGTTTCTAAATGAGGTAGAATGTTGCA 60.094 37.037 0.00 0.00 37.41 4.08
1939 2357 7.121315 AGGTTTCTAAATGAGGTAGAATGTTGC 59.879 37.037 0.00 0.00 37.41 4.17
1947 2365 8.541234 AGGAAGTAAGGTTTCTAAATGAGGTAG 58.459 37.037 0.00 0.00 0.00 3.18
2017 2435 6.438741 TGTATGGGAATTCCTTGCAATAACAA 59.561 34.615 23.63 0.00 33.60 2.83
2025 2443 4.023707 CGAAGATGTATGGGAATTCCTTGC 60.024 45.833 23.63 14.97 36.20 4.01
2094 2513 9.382275 ACCCAATTAAGAATAAAAATGCATGAC 57.618 29.630 0.00 0.00 0.00 3.06
2172 2600 2.235898 AGAGTGCTTCTTCCTGATCACC 59.764 50.000 0.00 0.00 32.53 4.02
2868 3403 7.283625 TCAAGTTGGTTGTGCATAAAGTAAT 57.716 32.000 2.34 0.00 37.43 1.89
2913 3455 6.204882 AGTTCCTGGAAAGTTATTTCACTTCG 59.795 38.462 11.40 0.00 45.59 3.79
2955 3497 8.498358 CAGATGTGCGAGATTAGCATATTTAAA 58.502 33.333 2.27 0.00 44.46 1.52
2958 3500 6.226052 TCAGATGTGCGAGATTAGCATATTT 58.774 36.000 2.27 0.00 44.46 1.40
3171 3713 4.093556 GCACAAAGTGAACTGTATAGGAGC 59.906 45.833 0.58 0.00 35.23 4.70
3172 3714 4.631813 GGCACAAAGTGAACTGTATAGGAG 59.368 45.833 0.58 0.00 35.23 3.69
3196 3743 7.625828 AGTATGCCTTGATAACTAAAACCAC 57.374 36.000 0.00 0.00 0.00 4.16
3203 3750 8.901472 ATCCTGATAGTATGCCTTGATAACTA 57.099 34.615 0.00 0.00 0.00 2.24
3251 3798 4.520492 TGGAGCTCTCAAATTTTGAACTCC 59.480 41.667 28.31 28.31 45.42 3.85
3267 3814 6.864342 TGAAACTATACTTACTGTGGAGCTC 58.136 40.000 4.71 4.71 0.00 4.09
3378 3931 3.066760 CACAAAAACTGTCCTGAACTCCC 59.933 47.826 0.00 0.00 35.47 4.30
3665 7411 3.872771 ACATTCAAGGTGTACGACGTTTT 59.127 39.130 5.50 0.00 30.06 2.43
3702 7451 5.301805 TGGATAAACTGATCGATACAGCTCA 59.698 40.000 18.73 4.76 38.74 4.26
3803 7594 1.417517 AGCCTGATGCATCCGTAATCA 59.582 47.619 23.67 3.92 44.83 2.57
3851 7642 1.605710 GCGCATTAGGCATTCATGAGT 59.394 47.619 0.30 0.00 45.17 3.41
3861 7653 3.496130 CCAGCTATATATGCGCATTAGGC 59.504 47.826 30.42 22.92 39.90 3.93
3869 7661 3.193479 TCCAGTCACCAGCTATATATGCG 59.807 47.826 0.00 0.00 35.28 4.73
3870 7662 4.808414 TCCAGTCACCAGCTATATATGC 57.192 45.455 0.00 0.00 0.00 3.14
3896 7689 7.402071 TCACTTATTTTGGTATGAGGGAGTACT 59.598 37.037 0.00 0.00 0.00 2.73
3897 7690 7.494952 GTCACTTATTTTGGTATGAGGGAGTAC 59.505 40.741 0.00 0.00 25.68 2.73
3898 7691 7.402071 AGTCACTTATTTTGGTATGAGGGAGTA 59.598 37.037 0.00 0.00 28.56 2.59
3899 7692 6.215636 AGTCACTTATTTTGGTATGAGGGAGT 59.784 38.462 0.00 0.00 25.68 3.85
3900 7693 6.653989 AGTCACTTATTTTGGTATGAGGGAG 58.346 40.000 0.00 0.00 25.68 4.30
3901 7694 6.214615 TGAGTCACTTATTTTGGTATGAGGGA 59.785 38.462 0.00 0.00 0.00 4.20
3902 7695 6.414732 TGAGTCACTTATTTTGGTATGAGGG 58.585 40.000 0.00 0.00 0.00 4.30
3903 7696 7.607991 AGTTGAGTCACTTATTTTGGTATGAGG 59.392 37.037 0.00 0.00 0.00 3.86
3904 7697 8.553459 AGTTGAGTCACTTATTTTGGTATGAG 57.447 34.615 0.00 0.00 0.00 2.90
3905 7698 8.918202 AAGTTGAGTCACTTATTTTGGTATGA 57.082 30.769 0.00 0.00 35.10 2.15
3906 7699 9.398170 CAAAGTTGAGTCACTTATTTTGGTATG 57.602 33.333 0.00 0.00 35.87 2.39
3907 7700 9.131791 ACAAAGTTGAGTCACTTATTTTGGTAT 57.868 29.630 12.94 0.00 35.87 2.73
3908 7701 8.514330 ACAAAGTTGAGTCACTTATTTTGGTA 57.486 30.769 12.94 0.00 35.87 3.25
3909 7702 7.404671 ACAAAGTTGAGTCACTTATTTTGGT 57.595 32.000 12.94 1.21 35.87 3.67
3910 7703 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
3916 7709 9.309516 CAAGTTAGTACAAAGTTGAGTCACTTA 57.690 33.333 0.00 0.00 40.66 2.24
3917 7710 8.038944 TCAAGTTAGTACAAAGTTGAGTCACTT 58.961 33.333 0.00 0.00 41.57 3.16
3918 7711 7.491696 GTCAAGTTAGTACAAAGTTGAGTCACT 59.508 37.037 7.02 0.00 45.06 3.41
3919 7712 7.491696 AGTCAAGTTAGTACAAAGTTGAGTCAC 59.508 37.037 7.02 0.00 43.91 3.67
3920 7713 7.553334 AGTCAAGTTAGTACAAAGTTGAGTCA 58.447 34.615 7.02 0.00 43.91 3.41
3923 7716 8.328864 GTTGAGTCAAGTTAGTACAAAGTTGAG 58.671 37.037 5.62 0.00 45.06 3.02
3924 7717 8.038944 AGTTGAGTCAAGTTAGTACAAAGTTGA 58.961 33.333 5.62 3.38 43.27 3.18
3925 7718 8.197988 AGTTGAGTCAAGTTAGTACAAAGTTG 57.802 34.615 5.62 0.00 39.91 3.16
3926 7719 8.788325 AAGTTGAGTCAAGTTAGTACAAAGTT 57.212 30.769 21.80 0.00 35.55 2.66
3927 7720 8.665685 CAAAGTTGAGTCAAGTTAGTACAAAGT 58.334 33.333 23.06 4.83 36.18 2.66
3928 7721 8.665685 ACAAAGTTGAGTCAAGTTAGTACAAAG 58.334 33.333 23.06 10.30 36.18 2.77
3929 7722 8.556213 ACAAAGTTGAGTCAAGTTAGTACAAA 57.444 30.769 23.06 0.00 36.18 2.83
3930 7723 9.090692 GTACAAAGTTGAGTCAAGTTAGTACAA 57.909 33.333 23.06 6.57 36.18 2.41
3931 7724 8.472413 AGTACAAAGTTGAGTCAAGTTAGTACA 58.528 33.333 23.06 7.45 36.18 2.90
3932 7725 8.868635 AGTACAAAGTTGAGTCAAGTTAGTAC 57.131 34.615 23.06 21.38 36.18 2.73
3934 7727 9.310716 GTTAGTACAAAGTTGAGTCAAGTTAGT 57.689 33.333 23.06 14.29 36.18 2.24
3935 7728 9.530633 AGTTAGTACAAAGTTGAGTCAAGTTAG 57.469 33.333 23.06 9.45 36.18 2.34
3936 7729 9.880157 AAGTTAGTACAAAGTTGAGTCAAGTTA 57.120 29.630 23.06 8.09 36.18 2.24
3937 7730 8.788325 AAGTTAGTACAAAGTTGAGTCAAGTT 57.212 30.769 18.38 18.38 38.46 2.66
3938 7731 8.788325 AAAGTTAGTACAAAGTTGAGTCAAGT 57.212 30.769 5.62 6.60 0.00 3.16
3966 7759 9.726438 ATGACTCAACTTTATACTTGCTTTAGT 57.274 29.630 0.00 0.00 0.00 2.24
3980 7773 8.096414 CCATCCCAAAATAAATGACTCAACTTT 58.904 33.333 0.00 0.00 0.00 2.66
3981 7774 7.454380 TCCATCCCAAAATAAATGACTCAACTT 59.546 33.333 0.00 0.00 0.00 2.66
3982 7775 6.953520 TCCATCCCAAAATAAATGACTCAACT 59.046 34.615 0.00 0.00 0.00 3.16
3983 7776 7.169158 TCCATCCCAAAATAAATGACTCAAC 57.831 36.000 0.00 0.00 0.00 3.18
3984 7777 6.380846 CCTCCATCCCAAAATAAATGACTCAA 59.619 38.462 0.00 0.00 0.00 3.02
3985 7778 5.893255 CCTCCATCCCAAAATAAATGACTCA 59.107 40.000 0.00 0.00 0.00 3.41
3986 7779 5.302823 CCCTCCATCCCAAAATAAATGACTC 59.697 44.000 0.00 0.00 0.00 3.36
3987 7780 5.043432 TCCCTCCATCCCAAAATAAATGACT 60.043 40.000 0.00 0.00 0.00 3.41
3988 7781 5.208121 TCCCTCCATCCCAAAATAAATGAC 58.792 41.667 0.00 0.00 0.00 3.06
3989 7782 5.043432 ACTCCCTCCATCCCAAAATAAATGA 60.043 40.000 0.00 0.00 0.00 2.57
3990 7783 5.211201 ACTCCCTCCATCCCAAAATAAATG 58.789 41.667 0.00 0.00 0.00 2.32
3991 7784 5.487861 ACTCCCTCCATCCCAAAATAAAT 57.512 39.130 0.00 0.00 0.00 1.40
3992 7785 4.965283 ACTCCCTCCATCCCAAAATAAA 57.035 40.909 0.00 0.00 0.00 1.40
3993 7786 5.043762 ACTACTCCCTCCATCCCAAAATAA 58.956 41.667 0.00 0.00 0.00 1.40
3994 7787 4.641868 ACTACTCCCTCCATCCCAAAATA 58.358 43.478 0.00 0.00 0.00 1.40
3995 7788 3.474920 ACTACTCCCTCCATCCCAAAAT 58.525 45.455 0.00 0.00 0.00 1.82
3996 7789 2.929301 ACTACTCCCTCCATCCCAAAA 58.071 47.619 0.00 0.00 0.00 2.44
3997 7790 2.661176 ACTACTCCCTCCATCCCAAA 57.339 50.000 0.00 0.00 0.00 3.28
3998 7791 2.863238 TCTACTACTCCCTCCATCCCAA 59.137 50.000 0.00 0.00 0.00 4.12
3999 7792 2.447429 CTCTACTACTCCCTCCATCCCA 59.553 54.545 0.00 0.00 0.00 4.37
4000 7793 2.447811 ACTCTACTACTCCCTCCATCCC 59.552 54.545 0.00 0.00 0.00 3.85
4001 7794 3.887916 ACTCTACTACTCCCTCCATCC 57.112 52.381 0.00 0.00 0.00 3.51
4002 7795 7.261688 ACTATACTCTACTACTCCCTCCATC 57.738 44.000 0.00 0.00 0.00 3.51
4003 7796 7.651229 AACTATACTCTACTACTCCCTCCAT 57.349 40.000 0.00 0.00 0.00 3.41
4004 7797 7.350389 AGAAACTATACTCTACTACTCCCTCCA 59.650 40.741 0.00 0.00 0.00 3.86
4005 7798 7.662669 CAGAAACTATACTCTACTACTCCCTCC 59.337 44.444 0.00 0.00 0.00 4.30
4006 7799 8.212995 ACAGAAACTATACTCTACTACTCCCTC 58.787 40.741 0.00 0.00 0.00 4.30
4007 7800 8.104838 ACAGAAACTATACTCTACTACTCCCT 57.895 38.462 0.00 0.00 0.00 4.20
4008 7801 7.171337 CGACAGAAACTATACTCTACTACTCCC 59.829 44.444 0.00 0.00 0.00 4.30
4009 7802 7.925483 TCGACAGAAACTATACTCTACTACTCC 59.075 40.741 0.00 0.00 0.00 3.85
4010 7803 8.870160 TCGACAGAAACTATACTCTACTACTC 57.130 38.462 0.00 0.00 0.00 2.59
4063 7856 3.023119 TCAACACCACCAATATGATGCC 58.977 45.455 0.00 0.00 0.00 4.40
4066 7859 3.128589 GCGTTCAACACCACCAATATGAT 59.871 43.478 0.00 0.00 0.00 2.45
4078 7871 2.982038 CTTGCGTGGGCGTTCAACAC 62.982 60.000 0.00 0.00 44.10 3.32
4084 7877 4.041917 CATGCTTGCGTGGGCGTT 62.042 61.111 6.91 0.00 44.10 4.84
4092 7885 2.599973 GTCAAAAATAGCCATGCTTGCG 59.400 45.455 0.00 0.00 40.44 4.85
4095 7888 7.286087 TGATCATAGTCAAAAATAGCCATGCTT 59.714 33.333 0.00 0.00 40.44 3.91
4204 8001 1.942657 CATGTTGGATAGCCGTCTTGG 59.057 52.381 0.00 0.00 42.50 3.61
4211 8008 5.242393 ACTTTGATATGCATGTTGGATAGCC 59.758 40.000 10.16 0.00 36.45 3.93
4431 8237 4.298332 CCAAGTTTGATGGGTTTTCTTCG 58.702 43.478 0.00 0.00 34.15 3.79
4582 8391 5.591472 CACCTGATATGATTTGTGGATGTGT 59.409 40.000 0.00 0.00 0.00 3.72
4668 8477 2.234908 CCATACCAGTAGCTAGATGGCC 59.765 54.545 20.21 0.00 37.64 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.