Multiple sequence alignment - TraesCS6D01G371300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G371300 chr6D 100.000 4173 0 0 1 4173 456562905 456558733 0.000000e+00 7707.0
1 TraesCS6D01G371300 chr6A 92.193 3356 198 33 150 3485 603300732 603297421 0.000000e+00 4687.0
2 TraesCS6D01G371300 chr6A 87.395 119 13 2 3924 4042 603296933 603296817 7.280000e-28 135.0
3 TraesCS6D01G371300 chr6A 89.189 111 1 5 4072 4171 603282958 603282848 1.220000e-25 128.0
4 TraesCS6D01G371300 chr6B 94.806 2503 93 16 813 3289 694408710 694406219 0.000000e+00 3868.0
5 TraesCS6D01G371300 chr6B 88.538 506 44 6 282 785 694409204 694408711 5.970000e-168 601.0
6 TraesCS6D01G371300 chr6B 91.163 215 14 5 3328 3542 694406224 694406015 1.900000e-73 287.0
7 TraesCS6D01G371300 chr6B 88.889 153 6 3 4030 4172 694405600 694405449 1.190000e-40 178.0
8 TraesCS6D01G371300 chr7D 93.590 156 7 2 1 154 368573197 368573351 3.240000e-56 230.0
9 TraesCS6D01G371300 chr3D 93.590 156 7 2 1 154 287926660 287926814 3.240000e-56 230.0
10 TraesCS6D01G371300 chr3D 94.079 152 7 2 1 151 287933557 287933707 3.240000e-56 230.0
11 TraesCS6D01G371300 chr3D 94.595 148 5 2 1 146 377918433 377918579 4.200000e-55 226.0
12 TraesCS6D01G371300 chr3D 80.682 88 12 2 392 477 607400556 607400472 3.480000e-06 63.9
13 TraesCS6D01G371300 chr5B 93.038 158 7 3 1 155 293222221 293222065 1.170000e-55 228.0
14 TraesCS6D01G371300 chr5B 94.040 151 6 2 1 149 529843808 529843957 4.200000e-55 226.0
15 TraesCS6D01G371300 chr5B 97.368 38 1 0 433 470 70905839 70905802 9.680000e-07 65.8
16 TraesCS6D01G371300 chr2D 94.079 152 6 2 1 150 320471705 320471855 1.170000e-55 228.0
17 TraesCS6D01G371300 chr1D 93.506 154 6 3 1 151 239826247 239826095 4.200000e-55 226.0
18 TraesCS6D01G371300 chr1D 92.857 42 2 1 3883 3924 335588856 335588896 4.510000e-05 60.2
19 TraesCS6D01G371300 chr4B 92.903 155 7 3 3 154 629556892 629557045 5.430000e-54 222.0
20 TraesCS6D01G371300 chr7A 72.079 505 115 18 281 766 13827114 13827611 1.220000e-25 128.0
21 TraesCS6D01G371300 chr2A 81.250 144 25 2 546 687 307707636 307707779 9.480000e-22 115.0
22 TraesCS6D01G371300 chr2A 77.778 117 23 3 359 474 93997100 93997214 7.490000e-08 69.4
23 TraesCS6D01G371300 chr3B 80.198 101 18 2 363 463 420904337 420904435 1.610000e-09 75.0
24 TraesCS6D01G371300 chr7B 74.129 201 39 9 348 538 368202074 368201877 2.080000e-08 71.3
25 TraesCS6D01G371300 chr7B 94.737 38 1 1 3882 3919 336858819 336858783 1.620000e-04 58.4
26 TraesCS6D01G371300 chr5D 87.273 55 6 1 3883 3937 528307721 528307668 1.250000e-05 62.1
27 TraesCS6D01G371300 chr1A 88.462 52 4 2 3883 3934 542140260 542140309 1.250000e-05 62.1
28 TraesCS6D01G371300 chr1B 94.595 37 1 1 3883 3919 451736515 451736550 5.830000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G371300 chr6D 456558733 456562905 4172 True 7707.0 7707 100.000 1 4173 1 chr6D.!!$R1 4172
1 TraesCS6D01G371300 chr6A 603296817 603300732 3915 True 2411.0 4687 89.794 150 4042 2 chr6A.!!$R2 3892
2 TraesCS6D01G371300 chr6B 694405449 694409204 3755 True 1233.5 3868 90.849 282 4172 4 chr6B.!!$R1 3890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.038892 ACGACTACATCAACCGCGTT 60.039 50.0 4.92 0.00 0.00 4.84 F
903 910 0.107459 GTGTGGATGGGCCTTCTCTC 60.107 60.0 17.89 10.06 37.63 3.20 F
945 955 0.895530 CTCCCCTCGTACTGAGCAAA 59.104 55.0 8.61 0.00 43.82 3.68 F
2222 2241 0.249031 GGCAGTGGTTGTTGTTCAGC 60.249 55.0 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1167 1186 0.460459 GGAGCTCGAAGTTGTAGGCC 60.460 60.000 7.83 0.0 0.00 5.19 R
2148 2167 0.701731 CCCACCACCCAGGAACATAA 59.298 55.000 0.00 0.0 41.22 1.90 R
2480 2499 1.459592 ACGCTAAATGCAAGACGTGTC 59.540 47.619 0.00 0.0 43.06 3.67 R
3619 3968 0.035056 AGAAATCCGCTCCCAACAGG 60.035 55.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.470876 ACGACTACATCAACCGCG 57.529 55.556 0.00 0.00 0.00 6.46
18 19 1.582968 ACGACTACATCAACCGCGT 59.417 52.632 4.92 0.00 0.00 6.01
19 20 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
20 21 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
28 29 2.580729 TCAACCGCGTTGATAAAACG 57.419 45.000 16.54 6.27 45.88 3.60
35 36 1.520368 CGTTGATAAAACGCTTCCGC 58.480 50.000 0.00 0.00 36.82 5.54
36 37 1.127951 CGTTGATAAAACGCTTCCGCT 59.872 47.619 0.00 0.00 36.82 5.52
37 38 2.412325 CGTTGATAAAACGCTTCCGCTT 60.412 45.455 0.00 0.00 36.82 4.68
38 39 3.181528 CGTTGATAAAACGCTTCCGCTTA 60.182 43.478 0.00 0.00 36.82 3.09
39 40 4.331962 GTTGATAAAACGCTTCCGCTTAG 58.668 43.478 0.00 0.00 38.22 2.18
40 41 2.350498 TGATAAAACGCTTCCGCTTAGC 59.650 45.455 0.00 0.00 38.22 3.09
53 54 2.317530 GCTTAGCGATCTTCAAGGGT 57.682 50.000 0.00 0.00 0.00 4.34
54 55 3.454371 GCTTAGCGATCTTCAAGGGTA 57.546 47.619 0.00 0.00 0.00 3.69
55 56 3.996480 GCTTAGCGATCTTCAAGGGTAT 58.004 45.455 0.00 0.00 0.00 2.73
56 57 3.743396 GCTTAGCGATCTTCAAGGGTATG 59.257 47.826 0.00 0.00 0.00 2.39
57 58 4.501571 GCTTAGCGATCTTCAAGGGTATGA 60.502 45.833 0.00 0.00 0.00 2.15
58 59 5.601662 CTTAGCGATCTTCAAGGGTATGAA 58.398 41.667 0.00 0.00 37.70 2.57
67 68 5.441718 TTCAAGGGTATGAAGATGCTCTT 57.558 39.130 0.00 0.00 39.87 2.85
76 77 3.518634 GAAGATGCTCTTCCTCTCGTT 57.481 47.619 12.34 0.00 45.34 3.85
77 78 2.957491 AGATGCTCTTCCTCTCGTTG 57.043 50.000 0.00 0.00 0.00 4.10
78 79 1.134848 AGATGCTCTTCCTCTCGTTGC 60.135 52.381 0.00 0.00 0.00 4.17
79 80 0.901124 ATGCTCTTCCTCTCGTTGCT 59.099 50.000 0.00 0.00 0.00 3.91
80 81 1.545841 TGCTCTTCCTCTCGTTGCTA 58.454 50.000 0.00 0.00 0.00 3.49
81 82 2.103373 TGCTCTTCCTCTCGTTGCTAT 58.897 47.619 0.00 0.00 0.00 2.97
82 83 2.159184 TGCTCTTCCTCTCGTTGCTATG 60.159 50.000 0.00 0.00 0.00 2.23
83 84 2.468831 CTCTTCCTCTCGTTGCTATGC 58.531 52.381 0.00 0.00 0.00 3.14
84 85 1.824852 TCTTCCTCTCGTTGCTATGCA 59.175 47.619 0.00 0.00 36.47 3.96
85 86 2.432146 TCTTCCTCTCGTTGCTATGCAT 59.568 45.455 3.79 3.79 38.76 3.96
86 87 2.515926 TCCTCTCGTTGCTATGCATC 57.484 50.000 0.19 0.00 38.76 3.91
87 88 2.034878 TCCTCTCGTTGCTATGCATCT 58.965 47.619 0.19 0.00 38.76 2.90
88 89 2.035193 TCCTCTCGTTGCTATGCATCTC 59.965 50.000 0.19 0.00 38.76 2.75
89 90 2.402305 CTCTCGTTGCTATGCATCTCC 58.598 52.381 0.19 0.00 38.76 3.71
90 91 1.756538 TCTCGTTGCTATGCATCTCCA 59.243 47.619 0.19 0.00 38.76 3.86
91 92 2.366590 TCTCGTTGCTATGCATCTCCAT 59.633 45.455 0.19 0.00 38.76 3.41
92 93 2.479275 CTCGTTGCTATGCATCTCCATG 59.521 50.000 0.19 0.00 38.76 3.66
93 94 1.534163 CGTTGCTATGCATCTCCATGG 59.466 52.381 4.97 4.97 38.76 3.66
94 95 2.807837 CGTTGCTATGCATCTCCATGGA 60.808 50.000 15.27 15.27 38.76 3.41
95 96 3.418995 GTTGCTATGCATCTCCATGGAT 58.581 45.455 16.63 1.02 43.17 3.41
96 97 4.582869 GTTGCTATGCATCTCCATGGATA 58.417 43.478 16.63 8.92 41.14 2.59
103 104 5.161943 TGCATCTCCATGGATAGATCTTG 57.838 43.478 16.63 6.79 29.93 3.02
104 105 3.940221 GCATCTCCATGGATAGATCTTGC 59.060 47.826 16.63 12.79 29.93 4.01
105 106 3.949842 TCTCCATGGATAGATCTTGCG 57.050 47.619 16.63 0.00 0.00 4.85
106 107 3.234353 TCTCCATGGATAGATCTTGCGT 58.766 45.455 16.63 0.00 0.00 5.24
107 108 3.006217 TCTCCATGGATAGATCTTGCGTG 59.994 47.826 16.63 6.14 0.00 5.34
108 109 2.700371 TCCATGGATAGATCTTGCGTGT 59.300 45.455 11.44 0.00 0.00 4.49
109 110 2.804527 CCATGGATAGATCTTGCGTGTG 59.195 50.000 5.56 0.00 0.00 3.82
110 111 1.939974 TGGATAGATCTTGCGTGTGC 58.060 50.000 0.00 0.00 43.20 4.57
142 143 6.889019 TTTTTGTTTTCCATGTTACGTTCC 57.111 33.333 0.00 0.00 0.00 3.62
143 144 4.571372 TTGTTTTCCATGTTACGTTCCC 57.429 40.909 0.00 0.00 0.00 3.97
144 145 2.885894 TGTTTTCCATGTTACGTTCCCC 59.114 45.455 0.00 0.00 0.00 4.81
145 146 2.885894 GTTTTCCATGTTACGTTCCCCA 59.114 45.455 0.00 0.00 0.00 4.96
146 147 2.953284 TTCCATGTTACGTTCCCCAA 57.047 45.000 0.00 0.00 0.00 4.12
147 148 2.188062 TCCATGTTACGTTCCCCAAC 57.812 50.000 0.00 0.00 0.00 3.77
148 149 1.420514 TCCATGTTACGTTCCCCAACA 59.579 47.619 3.49 3.49 36.66 3.33
154 155 2.162338 TACGTTCCCCAACAGAGGCG 62.162 60.000 0.00 0.00 32.14 5.52
179 181 0.750850 GTGTAGGAAGCTATGGCGGA 59.249 55.000 0.00 0.00 44.37 5.54
182 184 2.438021 TGTAGGAAGCTATGGCGGAAAT 59.562 45.455 0.00 0.00 44.37 2.17
183 185 1.972872 AGGAAGCTATGGCGGAAATG 58.027 50.000 0.00 0.00 44.37 2.32
210 213 3.181483 GGATTGGCAAAGCTGATAGTTGG 60.181 47.826 3.01 0.00 0.00 3.77
232 235 4.080863 GGTGATGACCAGGAGTGAGTATTT 60.081 45.833 0.00 0.00 42.59 1.40
241 244 5.757320 CCAGGAGTGAGTATTTGAAGCTATG 59.243 44.000 0.00 0.00 0.00 2.23
260 263 5.293079 GCTATGAGCATCGGATAGGATTTTC 59.707 44.000 0.00 0.00 41.89 2.29
263 266 2.982488 AGCATCGGATAGGATTTTCCCT 59.018 45.455 0.00 0.00 37.19 4.20
294 297 5.644636 TCTTGTTAAGTTCAACGTCTTGGTT 59.355 36.000 0.00 0.00 0.00 3.67
325 328 0.812412 GCGGCAGCGATACCCTTTAA 60.812 55.000 0.00 0.00 0.00 1.52
368 371 0.678048 GATCCCTGTTCTGGTGGTGC 60.678 60.000 0.00 0.00 0.00 5.01
410 413 1.069090 TGTGGAGGTGTGTCTTCGC 59.931 57.895 0.00 0.00 0.00 4.70
416 419 1.810030 GGTGTGTCTTCGCCCGATC 60.810 63.158 0.00 0.00 32.43 3.69
418 421 0.389948 GTGTGTCTTCGCCCGATCTT 60.390 55.000 0.00 0.00 0.00 2.40
419 422 0.389817 TGTGTCTTCGCCCGATCTTG 60.390 55.000 0.00 0.00 0.00 3.02
420 423 0.389948 GTGTCTTCGCCCGATCTTGT 60.390 55.000 0.00 0.00 0.00 3.16
422 425 0.108804 GTCTTCGCCCGATCTTGTGA 60.109 55.000 0.00 0.00 0.00 3.58
431 434 2.418746 CCCGATCTTGTGAGATTCGGTT 60.419 50.000 17.59 0.00 43.65 4.44
454 457 2.932614 GTGTTGATCTTCGGTGGATCTG 59.067 50.000 11.95 0.00 39.95 2.90
462 466 2.691409 TCGGTGGATCTGTTTGGATC 57.309 50.000 0.00 0.00 40.78 3.36
471 475 1.974957 TCTGTTTGGATCCCGTCTTCA 59.025 47.619 9.90 0.00 0.00 3.02
475 480 3.505680 TGTTTGGATCCCGTCTTCATTTG 59.494 43.478 9.90 0.00 0.00 2.32
525 530 1.965083 CGACTCACTTCAACGACGAT 58.035 50.000 0.00 0.00 0.00 3.73
528 533 1.340248 ACTCACTTCAACGACGATGGT 59.660 47.619 0.00 0.00 0.00 3.55
533 538 2.288579 ACTTCAACGACGATGGTTGCTA 60.289 45.455 0.00 4.07 43.37 3.49
536 541 2.066262 CAACGACGATGGTTGCTACTT 58.934 47.619 0.00 0.00 38.41 2.24
544 549 3.924686 CGATGGTTGCTACTTTAGTTCGT 59.075 43.478 0.00 0.00 0.00 3.85
571 576 0.901827 TGAGGCCTTAGCACGATGAA 59.098 50.000 6.77 0.00 42.56 2.57
579 584 4.379394 GCCTTAGCACGATGAATTTCAACA 60.379 41.667 2.68 0.00 39.53 3.33
602 607 5.527582 CAGTCTACTACAACAAAGTTTGCCT 59.472 40.000 15.59 0.16 0.00 4.75
635 640 1.493950 GAAGAGCGATGATGGTGGCG 61.494 60.000 0.00 0.00 0.00 5.69
668 673 4.567159 CCCGCTCAAGTACTTTTAGTCATC 59.433 45.833 5.07 0.00 0.00 2.92
669 674 5.411781 CCGCTCAAGTACTTTTAGTCATCT 58.588 41.667 5.07 0.00 0.00 2.90
770 776 8.390354 GGATTGAAAGTTCCTTCAAAAACAAAG 58.610 33.333 3.13 0.00 45.75 2.77
771 777 7.665561 TTGAAAGTTCCTTCAAAAACAAAGG 57.334 32.000 0.00 0.00 41.25 3.11
780 786 9.952030 TTCCTTCAAAAACAAAGGTAGAATTTT 57.048 25.926 1.41 0.00 42.28 1.82
784 790 7.276658 TCAAAAACAAAGGTAGAATTTTCCCC 58.723 34.615 0.00 0.00 0.00 4.81
795 801 6.381133 GGTAGAATTTTCCCCAAGAATGACAT 59.619 38.462 0.00 0.00 33.44 3.06
833 840 1.017701 CGACGAGTTAAACTGGGCCC 61.018 60.000 17.59 17.59 26.65 5.80
864 871 3.134442 TCATTTTGGCCCATTATTCAGCC 59.866 43.478 0.00 0.00 45.96 4.85
903 910 0.107459 GTGTGGATGGGCCTTCTCTC 60.107 60.000 17.89 10.06 37.63 3.20
940 950 3.097293 AGGCTCCCCTCGTACTGA 58.903 61.111 0.00 0.00 36.46 3.41
941 951 1.076632 AGGCTCCCCTCGTACTGAG 60.077 63.158 7.49 7.49 44.83 3.35
942 952 2.809010 GCTCCCCTCGTACTGAGC 59.191 66.667 8.61 0.00 43.82 4.26
943 953 4.338815 CTCCCCTCGTACTGAGCA 57.661 61.111 8.61 0.00 43.82 4.26
944 954 2.579878 CTCCCCTCGTACTGAGCAA 58.420 57.895 8.61 0.00 43.82 3.91
945 955 0.895530 CTCCCCTCGTACTGAGCAAA 59.104 55.000 8.61 0.00 43.82 3.68
946 956 1.275291 CTCCCCTCGTACTGAGCAAAA 59.725 52.381 8.61 0.00 43.82 2.44
947 957 1.275291 TCCCCTCGTACTGAGCAAAAG 59.725 52.381 8.61 0.00 43.82 2.27
948 958 1.079503 CCCTCGTACTGAGCAAAAGC 58.920 55.000 8.61 0.00 43.82 3.51
949 959 1.338200 CCCTCGTACTGAGCAAAAGCT 60.338 52.381 8.61 0.00 43.82 3.74
950 960 2.094182 CCCTCGTACTGAGCAAAAGCTA 60.094 50.000 8.61 0.00 43.82 3.32
951 961 3.585862 CCTCGTACTGAGCAAAAGCTAA 58.414 45.455 8.61 0.00 43.82 3.09
952 962 3.994392 CCTCGTACTGAGCAAAAGCTAAA 59.006 43.478 8.61 0.00 43.82 1.85
957 967 6.017440 TCGTACTGAGCAAAAGCTAAACAAAT 60.017 34.615 0.00 0.00 0.00 2.32
960 970 5.068987 ACTGAGCAAAAGCTAAACAAATCCA 59.931 36.000 0.00 0.00 0.00 3.41
1071 1090 1.968017 CCAGAGCAGCGCCAAGAAA 60.968 57.895 2.29 0.00 0.00 2.52
1794 1813 1.377612 GGTGAAGGCCTACCGGTTT 59.622 57.895 15.04 0.00 42.76 3.27
1983 2002 3.260205 TCTGGAGGAGAAAGGTTTGGAT 58.740 45.455 0.00 0.00 0.00 3.41
2118 2137 1.302511 TTTCAAGAGGCCGGTGCTC 60.303 57.895 1.90 0.00 37.74 4.26
2148 2167 1.956477 GAGTTTGATGTTGCACTGGGT 59.044 47.619 0.00 0.00 0.00 4.51
2211 2230 3.570212 GGTGGAGGTGGCAGTGGT 61.570 66.667 0.00 0.00 0.00 4.16
2222 2241 0.249031 GGCAGTGGTTGTTGTTCAGC 60.249 55.000 0.00 0.00 0.00 4.26
2259 2278 4.335594 GGAAATGGTGATTGTAGTAGTGGC 59.664 45.833 0.00 0.00 0.00 5.01
2352 2371 4.019792 TGGCTGCTACATGAAGAAGAAA 57.980 40.909 0.00 0.00 0.00 2.52
2399 2418 4.146100 GCGAGTTCGAATCGGTAATTACTC 59.854 45.833 22.42 12.14 43.02 2.59
2499 2518 1.726791 AGACACGTCTTGCATTTAGCG 59.273 47.619 0.00 0.00 38.21 4.26
2529 2550 6.655003 TCAGTTTCAGTGATTTCCATAGGTTC 59.345 38.462 0.00 0.00 0.00 3.62
2602 2623 3.129287 AGAGCGGATTTTTGCATGGTAAG 59.871 43.478 0.00 0.00 0.00 2.34
2631 2652 6.095440 AGTGAATTGTAGTGTTCTTTTGCAGT 59.905 34.615 0.00 0.00 0.00 4.40
2637 2658 2.290641 AGTGTTCTTTTGCAGTAAGGCG 59.709 45.455 9.85 0.00 36.28 5.52
2638 2659 2.032924 GTGTTCTTTTGCAGTAAGGCGT 59.967 45.455 9.85 0.00 36.28 5.68
2780 2801 7.768807 AGCATAGTCGGTATAGAGAGAAATT 57.231 36.000 0.00 0.00 0.00 1.82
2786 2807 7.662897 AGTCGGTATAGAGAGAAATTGGAATC 58.337 38.462 0.00 0.00 0.00 2.52
2797 2822 6.599638 AGAGAAATTGGAATCTTAGTTTCCGG 59.400 38.462 14.98 0.00 44.67 5.14
2834 2859 5.590663 GGGAATGAGGAGGATTTTGACTTAC 59.409 44.000 0.00 0.00 0.00 2.34
2837 2862 7.362142 GGAATGAGGAGGATTTTGACTTACAAC 60.362 40.741 0.00 0.00 38.29 3.32
2854 2879 4.847990 ACAACGGATTTAATACCCCTCA 57.152 40.909 0.00 0.00 0.00 3.86
3108 3136 7.843490 TTCTACTGTGTTATATTGGTCTTGC 57.157 36.000 0.00 0.00 0.00 4.01
3124 3155 5.295787 TGGTCTTGCGGTCATTTATATTCAC 59.704 40.000 0.00 0.00 0.00 3.18
3175 3210 4.008074 AGTCGAGGAGAAGCAATGAAAA 57.992 40.909 0.00 0.00 0.00 2.29
3192 3227 3.882888 TGAAAAGAAACATCGCTGAGGTT 59.117 39.130 0.00 3.41 38.20 3.50
3195 3230 3.678056 AGAAACATCGCTGAGGTTACA 57.322 42.857 8.54 0.00 35.48 2.41
3206 3241 0.606604 GAGGTTACAGAAGCCGACCA 59.393 55.000 0.00 0.00 33.30 4.02
3253 3288 6.361433 TCCAGAATTTTTGACACCAGACTTA 58.639 36.000 0.00 0.00 0.00 2.24
3301 3336 2.365582 ACGCAACAGAGGACAAACTTT 58.634 42.857 0.00 0.00 0.00 2.66
3330 3366 3.633986 GCTGACAGGCCTTTTATAAGCAT 59.366 43.478 0.00 0.00 0.00 3.79
3360 3396 6.497624 ACTCTGAGCTCCTTTATCATCAAT 57.502 37.500 12.15 0.00 0.00 2.57
3361 3397 6.523840 ACTCTGAGCTCCTTTATCATCAATC 58.476 40.000 12.15 0.00 0.00 2.67
3362 3398 6.099413 ACTCTGAGCTCCTTTATCATCAATCA 59.901 38.462 12.15 0.00 0.00 2.57
3363 3399 6.892485 TCTGAGCTCCTTTATCATCAATCAA 58.108 36.000 12.15 0.00 0.00 2.57
3470 3507 8.456904 TCATACTGTAAACTTGTGTATCGTTC 57.543 34.615 0.00 0.00 0.00 3.95
3475 3512 6.044046 TGTAAACTTGTGTATCGTTCACTGT 58.956 36.000 0.00 0.00 36.83 3.55
3494 3531 4.901250 ACTGTTGAATCTTTCCCCAAATGT 59.099 37.500 0.00 0.00 0.00 2.71
3498 3535 6.126940 TGTTGAATCTTTCCCCAAATGTGAAA 60.127 34.615 0.00 0.00 0.00 2.69
3522 3559 4.080695 TCTGCTTTGGCTCAGATTATCAGT 60.081 41.667 0.00 0.00 39.59 3.41
3595 3944 6.754193 AGAACTTCTACTCTCAGTTTTCTGG 58.246 40.000 0.00 0.00 46.94 3.86
3599 3948 6.211584 ACTTCTACTCTCAGTTTTCTGGCATA 59.788 38.462 0.00 0.00 46.94 3.14
3600 3949 6.214191 TCTACTCTCAGTTTTCTGGCATAG 57.786 41.667 0.00 0.00 46.94 2.23
3601 3950 5.952347 TCTACTCTCAGTTTTCTGGCATAGA 59.048 40.000 0.00 0.00 46.94 1.98
3602 3951 5.083533 ACTCTCAGTTTTCTGGCATAGAG 57.916 43.478 0.00 0.00 46.94 2.43
3603 3952 4.774726 ACTCTCAGTTTTCTGGCATAGAGA 59.225 41.667 14.25 0.00 46.94 3.10
3604 3953 5.247110 ACTCTCAGTTTTCTGGCATAGAGAA 59.753 40.000 14.25 0.00 46.94 2.87
3605 3954 5.482908 TCTCAGTTTTCTGGCATAGAGAAC 58.517 41.667 12.76 12.76 45.89 3.01
3615 3964 3.104843 GCATAGAGAACTAGGCCACAG 57.895 52.381 5.01 3.76 46.45 3.66
3616 3965 2.432510 GCATAGAGAACTAGGCCACAGT 59.567 50.000 5.01 4.55 46.45 3.55
3617 3966 3.739519 GCATAGAGAACTAGGCCACAGTG 60.740 52.174 5.01 0.00 46.45 3.66
3618 3967 2.310779 AGAGAACTAGGCCACAGTGA 57.689 50.000 5.01 0.00 0.00 3.41
3619 3968 1.896465 AGAGAACTAGGCCACAGTGAC 59.104 52.381 5.01 6.22 0.00 3.67
3620 3969 0.977395 AGAACTAGGCCACAGTGACC 59.023 55.000 5.01 0.00 0.00 4.02
3621 3970 0.977395 GAACTAGGCCACAGTGACCT 59.023 55.000 13.68 13.68 37.61 3.85
3622 3971 0.687354 AACTAGGCCACAGTGACCTG 59.313 55.000 18.36 10.53 44.68 4.00
3630 3979 4.386413 CAGTGACCTGTTGGGAGC 57.614 61.111 0.00 0.00 38.76 4.70
3631 3980 1.669115 CAGTGACCTGTTGGGAGCG 60.669 63.158 0.00 0.00 38.76 5.03
3632 3981 2.358737 GTGACCTGTTGGGAGCGG 60.359 66.667 0.00 0.00 38.76 5.52
3633 3982 2.525629 TGACCTGTTGGGAGCGGA 60.526 61.111 0.00 0.00 38.76 5.54
3634 3983 1.918293 TGACCTGTTGGGAGCGGAT 60.918 57.895 0.00 0.00 38.76 4.18
3635 3984 1.299976 GACCTGTTGGGAGCGGATT 59.700 57.895 0.00 0.00 38.76 3.01
3636 3985 0.322546 GACCTGTTGGGAGCGGATTT 60.323 55.000 0.00 0.00 38.76 2.17
3637 3986 0.322546 ACCTGTTGGGAGCGGATTTC 60.323 55.000 0.00 0.00 38.76 2.17
3638 3987 0.035056 CCTGTTGGGAGCGGATTTCT 60.035 55.000 0.00 0.00 37.23 2.52
3639 3988 1.209504 CCTGTTGGGAGCGGATTTCTA 59.790 52.381 0.00 0.00 37.23 2.10
3640 3989 2.555199 CTGTTGGGAGCGGATTTCTAG 58.445 52.381 0.00 0.00 0.00 2.43
3641 3990 1.300481 GTTGGGAGCGGATTTCTAGC 58.700 55.000 0.00 0.00 0.00 3.42
3642 3991 0.179084 TTGGGAGCGGATTTCTAGCG 60.179 55.000 0.00 0.00 35.78 4.26
3643 3992 1.956678 GGGAGCGGATTTCTAGCGC 60.957 63.158 0.00 0.00 35.78 5.92
3644 3993 1.956678 GGAGCGGATTTCTAGCGCC 60.957 63.158 2.29 5.87 43.00 6.53
3645 3994 1.068250 GAGCGGATTTCTAGCGCCT 59.932 57.895 2.29 0.00 35.78 5.52
3646 3995 0.941936 GAGCGGATTTCTAGCGCCTC 60.942 60.000 2.29 0.00 35.78 4.70
3647 3996 1.227263 GCGGATTTCTAGCGCCTCA 60.227 57.895 2.29 0.00 0.00 3.86
3648 3997 0.810031 GCGGATTTCTAGCGCCTCAA 60.810 55.000 2.29 0.00 0.00 3.02
3649 3998 0.931005 CGGATTTCTAGCGCCTCAAC 59.069 55.000 2.29 0.00 0.00 3.18
3650 3999 1.300481 GGATTTCTAGCGCCTCAACC 58.700 55.000 2.29 0.00 0.00 3.77
3651 4000 1.406887 GGATTTCTAGCGCCTCAACCA 60.407 52.381 2.29 0.00 0.00 3.67
3652 4001 1.936547 GATTTCTAGCGCCTCAACCAG 59.063 52.381 2.29 0.00 0.00 4.00
3653 4002 0.973632 TTTCTAGCGCCTCAACCAGA 59.026 50.000 2.29 0.00 0.00 3.86
3654 4003 1.195115 TTCTAGCGCCTCAACCAGAT 58.805 50.000 2.29 0.00 0.00 2.90
3655 4004 0.461548 TCTAGCGCCTCAACCAGATG 59.538 55.000 2.29 0.00 0.00 2.90
3656 4005 0.461548 CTAGCGCCTCAACCAGATGA 59.538 55.000 2.29 0.00 0.00 2.92
3657 4006 1.069823 CTAGCGCCTCAACCAGATGAT 59.930 52.381 2.29 0.00 0.00 2.45
3658 4007 0.254178 AGCGCCTCAACCAGATGATT 59.746 50.000 2.29 0.00 0.00 2.57
3659 4008 1.098050 GCGCCTCAACCAGATGATTT 58.902 50.000 0.00 0.00 0.00 2.17
3660 4009 1.064654 GCGCCTCAACCAGATGATTTC 59.935 52.381 0.00 0.00 0.00 2.17
3661 4010 1.672881 CGCCTCAACCAGATGATTTCC 59.327 52.381 0.00 0.00 0.00 3.13
3662 4011 2.681976 CGCCTCAACCAGATGATTTCCT 60.682 50.000 0.00 0.00 0.00 3.36
3663 4012 3.359950 GCCTCAACCAGATGATTTCCTT 58.640 45.455 0.00 0.00 0.00 3.36
3664 4013 3.379688 GCCTCAACCAGATGATTTCCTTC 59.620 47.826 0.00 0.00 0.00 3.46
3665 4014 4.853007 CCTCAACCAGATGATTTCCTTCT 58.147 43.478 0.00 0.00 0.00 2.85
3666 4015 5.630069 GCCTCAACCAGATGATTTCCTTCTA 60.630 44.000 0.00 0.00 0.00 2.10
3667 4016 6.599445 CCTCAACCAGATGATTTCCTTCTAT 58.401 40.000 0.00 0.00 0.00 1.98
3668 4017 7.690301 GCCTCAACCAGATGATTTCCTTCTATA 60.690 40.741 0.00 0.00 0.00 1.31
3669 4018 8.213679 CCTCAACCAGATGATTTCCTTCTATAA 58.786 37.037 0.00 0.00 0.00 0.98
3670 4019 9.618890 CTCAACCAGATGATTTCCTTCTATAAA 57.381 33.333 0.00 0.00 0.00 1.40
3671 4020 9.973661 TCAACCAGATGATTTCCTTCTATAAAA 57.026 29.630 0.00 0.00 0.00 1.52
3673 4022 9.981460 AACCAGATGATTTCCTTCTATAAAAGT 57.019 29.630 0.00 0.00 0.00 2.66
3683 4032 9.627123 TTTCCTTCTATAAAAGTATGTCATGGG 57.373 33.333 0.00 0.00 0.00 4.00
3684 4033 7.224297 TCCTTCTATAAAAGTATGTCATGGGC 58.776 38.462 0.00 0.00 0.00 5.36
3685 4034 6.147821 CCTTCTATAAAAGTATGTCATGGGCG 59.852 42.308 0.00 0.00 0.00 6.13
3686 4035 4.994852 TCTATAAAAGTATGTCATGGGCGC 59.005 41.667 0.00 0.00 0.00 6.53
3687 4036 2.128771 AAAAGTATGTCATGGGCGCT 57.871 45.000 7.64 0.00 0.00 5.92
3688 4037 3.275617 AAAAGTATGTCATGGGCGCTA 57.724 42.857 7.64 0.00 0.00 4.26
3689 4038 2.533266 AAGTATGTCATGGGCGCTAG 57.467 50.000 7.64 0.00 0.00 3.42
3690 4039 1.414158 AGTATGTCATGGGCGCTAGT 58.586 50.000 7.64 0.00 0.00 2.57
3691 4040 1.069204 AGTATGTCATGGGCGCTAGTG 59.931 52.381 7.64 0.00 0.00 2.74
3692 4041 0.249868 TATGTCATGGGCGCTAGTGC 60.250 55.000 20.17 20.17 0.00 4.40
3693 4042 1.976132 ATGTCATGGGCGCTAGTGCT 61.976 55.000 26.36 5.43 36.97 4.40
3694 4043 1.884926 GTCATGGGCGCTAGTGCTC 60.885 63.158 26.36 24.09 36.97 4.26
3697 4046 2.187685 TGGGCGCTAGTGCTCATG 59.812 61.111 26.74 0.00 41.34 3.07
3698 4047 2.590007 GGGCGCTAGTGCTCATGG 60.590 66.667 26.36 0.00 34.69 3.66
3699 4048 2.501128 GGCGCTAGTGCTCATGGA 59.499 61.111 26.36 0.00 36.97 3.41
3700 4049 1.070445 GGCGCTAGTGCTCATGGAT 59.930 57.895 26.36 0.00 36.97 3.41
3701 4050 0.948141 GGCGCTAGTGCTCATGGATC 60.948 60.000 26.36 4.77 36.97 3.36
3702 4051 0.033228 GCGCTAGTGCTCATGGATCT 59.967 55.000 20.99 0.00 36.97 2.75
3703 4052 1.934399 GCGCTAGTGCTCATGGATCTC 60.934 57.143 20.99 0.00 36.97 2.75
3704 4053 1.339291 CGCTAGTGCTCATGGATCTCA 59.661 52.381 0.00 0.00 36.97 3.27
3705 4054 2.029200 CGCTAGTGCTCATGGATCTCAT 60.029 50.000 0.00 0.00 36.97 2.90
3706 4055 3.192212 CGCTAGTGCTCATGGATCTCATA 59.808 47.826 0.00 0.00 36.97 2.15
3707 4056 4.142204 CGCTAGTGCTCATGGATCTCATAT 60.142 45.833 0.00 0.00 36.97 1.78
3708 4057 5.624052 CGCTAGTGCTCATGGATCTCATATT 60.624 44.000 0.00 0.00 36.97 1.28
3709 4058 6.171921 GCTAGTGCTCATGGATCTCATATTT 58.828 40.000 0.00 0.00 33.58 1.40
3710 4059 6.654161 GCTAGTGCTCATGGATCTCATATTTT 59.346 38.462 0.00 0.00 33.58 1.82
3711 4060 7.174599 GCTAGTGCTCATGGATCTCATATTTTT 59.825 37.037 0.00 0.00 33.58 1.94
3712 4061 9.716531 CTAGTGCTCATGGATCTCATATTTTTA 57.283 33.333 0.00 0.00 34.12 1.52
3713 4062 8.618702 AGTGCTCATGGATCTCATATTTTTAG 57.381 34.615 0.00 0.00 34.12 1.85
3714 4063 8.216423 AGTGCTCATGGATCTCATATTTTTAGT 58.784 33.333 0.00 0.00 34.12 2.24
3715 4064 8.844244 GTGCTCATGGATCTCATATTTTTAGTT 58.156 33.333 0.00 0.00 34.12 2.24
3716 4065 9.412460 TGCTCATGGATCTCATATTTTTAGTTT 57.588 29.630 0.00 0.00 34.12 2.66
3717 4066 9.890352 GCTCATGGATCTCATATTTTTAGTTTC 57.110 33.333 0.00 0.00 34.12 2.78
3722 4071 9.396022 TGGATCTCATATTTTTAGTTTCCTGAC 57.604 33.333 0.00 0.00 0.00 3.51
3723 4072 9.396022 GGATCTCATATTTTTAGTTTCCTGACA 57.604 33.333 0.00 0.00 0.00 3.58
3733 4082 7.605410 TTTAGTTTCCTGACATAATCGTTCC 57.395 36.000 0.00 0.00 0.00 3.62
3734 4083 5.160607 AGTTTCCTGACATAATCGTTCCA 57.839 39.130 0.00 0.00 0.00 3.53
3758 4107 6.685828 CAGTGATTTCAAGCTGATATTTGACG 59.314 38.462 0.00 0.00 33.36 4.35
3760 4109 7.119699 AGTGATTTCAAGCTGATATTTGACGAA 59.880 33.333 0.00 0.00 33.36 3.85
3774 4123 4.846779 TTGACGAAGCTAAAAGCCAATT 57.153 36.364 0.00 0.00 43.77 2.32
3775 4124 4.846779 TGACGAAGCTAAAAGCCAATTT 57.153 36.364 0.00 0.00 43.77 1.82
3776 4125 5.195001 TGACGAAGCTAAAAGCCAATTTT 57.805 34.783 0.00 0.00 43.77 1.82
3777 4126 4.981674 TGACGAAGCTAAAAGCCAATTTTG 59.018 37.500 0.00 0.00 43.77 2.44
3797 4169 1.152881 GGGGGCTTATGAGTGGCTG 60.153 63.158 0.00 0.00 0.00 4.85
3800 4172 0.253044 GGGCTTATGAGTGGCTGTCA 59.747 55.000 0.00 0.00 0.00 3.58
3801 4173 1.340017 GGGCTTATGAGTGGCTGTCAA 60.340 52.381 0.00 0.00 0.00 3.18
3802 4174 2.436417 GGCTTATGAGTGGCTGTCAAA 58.564 47.619 0.00 0.00 0.00 2.69
3803 4175 2.819608 GGCTTATGAGTGGCTGTCAAAA 59.180 45.455 0.00 0.00 0.00 2.44
3805 4177 4.439289 GGCTTATGAGTGGCTGTCAAAATC 60.439 45.833 0.00 0.00 0.00 2.17
3806 4178 4.156556 GCTTATGAGTGGCTGTCAAAATCA 59.843 41.667 0.00 0.00 0.00 2.57
3807 4179 5.675575 GCTTATGAGTGGCTGTCAAAATCAG 60.676 44.000 0.00 0.00 36.18 2.90
3815 4205 1.471684 CTGTCAAAATCAGCTGCTCCC 59.528 52.381 9.47 0.00 0.00 4.30
3817 4207 1.888512 GTCAAAATCAGCTGCTCCCAA 59.111 47.619 9.47 0.00 0.00 4.12
3819 4209 1.614903 CAAAATCAGCTGCTCCCAACA 59.385 47.619 9.47 0.00 0.00 3.33
3820 4210 2.226962 AAATCAGCTGCTCCCAACAT 57.773 45.000 9.47 0.00 0.00 2.71
3824 4214 3.153369 TCAGCTGCTCCCAACATAAAA 57.847 42.857 9.47 0.00 0.00 1.52
3871 4261 9.984590 TTTGGGTATTCTAAAAGCCTACTAATT 57.015 29.630 0.00 0.00 34.30 1.40
3901 4291 7.539712 TTAACTAGCATACACTCATTTCAGC 57.460 36.000 0.00 0.00 0.00 4.26
3903 4293 5.491070 ACTAGCATACACTCATTTCAGCAA 58.509 37.500 0.00 0.00 0.00 3.91
3904 4294 4.691860 AGCATACACTCATTTCAGCAAC 57.308 40.909 0.00 0.00 0.00 4.17
3906 4296 4.155462 AGCATACACTCATTTCAGCAACAG 59.845 41.667 0.00 0.00 0.00 3.16
3907 4297 4.083110 GCATACACTCATTTCAGCAACAGT 60.083 41.667 0.00 0.00 0.00 3.55
3908 4298 5.563475 GCATACACTCATTTCAGCAACAGTT 60.563 40.000 0.00 0.00 0.00 3.16
3909 4299 6.348458 GCATACACTCATTTCAGCAACAGTTA 60.348 38.462 0.00 0.00 0.00 2.24
3910 4300 7.584108 CATACACTCATTTCAGCAACAGTTAA 58.416 34.615 0.00 0.00 0.00 2.01
3911 4301 6.639632 ACACTCATTTCAGCAACAGTTAAT 57.360 33.333 0.00 0.00 0.00 1.40
3913 4303 7.141363 ACACTCATTTCAGCAACAGTTAATTC 58.859 34.615 0.00 0.00 0.00 2.17
3914 4304 6.583806 CACTCATTTCAGCAACAGTTAATTCC 59.416 38.462 0.00 0.00 0.00 3.01
3915 4305 6.491403 ACTCATTTCAGCAACAGTTAATTCCT 59.509 34.615 0.00 0.00 0.00 3.36
3916 4306 6.680810 TCATTTCAGCAACAGTTAATTCCTG 58.319 36.000 4.04 4.04 36.01 3.86
3917 4307 6.489700 TCATTTCAGCAACAGTTAATTCCTGA 59.510 34.615 11.00 0.00 34.04 3.86
3918 4308 5.689383 TTCAGCAACAGTTAATTCCTGAC 57.311 39.130 11.00 2.33 34.04 3.51
3919 4309 3.745975 TCAGCAACAGTTAATTCCTGACG 59.254 43.478 11.00 4.05 34.04 4.35
3920 4310 3.498397 CAGCAACAGTTAATTCCTGACGT 59.502 43.478 11.00 0.00 34.04 4.34
3921 4311 4.688879 CAGCAACAGTTAATTCCTGACGTA 59.311 41.667 11.00 0.00 34.04 3.57
3933 4323 2.457366 CTGACGTAGGAAGCAGGTTT 57.543 50.000 0.00 0.00 0.00 3.27
3934 4324 2.338500 CTGACGTAGGAAGCAGGTTTC 58.662 52.381 0.00 0.00 0.00 2.78
3942 4482 5.394224 CGTAGGAAGCAGGTTTCTAGAATGA 60.394 44.000 5.89 0.00 0.00 2.57
3956 4496 7.996098 TTCTAGAATGAAACTTTAGGTTGGG 57.004 36.000 0.00 0.00 38.29 4.12
3964 4504 1.340114 ACTTTAGGTTGGGCTGCTAGC 60.340 52.381 8.10 8.10 41.46 3.42
3971 4511 2.695147 GGTTGGGCTGCTAGCATAAAAT 59.305 45.455 19.72 0.00 44.75 1.82
3979 4519 3.486383 TGCTAGCATAAAATGGGTAGGC 58.514 45.455 14.93 0.00 36.03 3.93
4011 4551 1.294041 TGACAGCCACCCATAATCCA 58.706 50.000 0.00 0.00 0.00 3.41
4017 4557 3.099141 AGCCACCCATAATCCACAAAAG 58.901 45.455 0.00 0.00 0.00 2.27
4020 4560 4.620567 GCCACCCATAATCCACAAAAGAAC 60.621 45.833 0.00 0.00 0.00 3.01
4026 4566 2.380064 ATCCACAAAAGAACTGGCCA 57.620 45.000 4.71 4.71 0.00 5.36
4059 4604 2.190981 GCAAGCACATATTTGCAGAGC 58.809 47.619 15.86 11.83 46.72 4.09
4074 4619 2.289569 GCAGAGCCAATAGAGATGGGAG 60.290 54.545 0.00 0.00 38.44 4.30
4093 4638 5.766174 TGGGAGTCAACAAGTAAAACATACC 59.234 40.000 0.00 0.00 0.00 2.73
4096 4651 6.370718 GGAGTCAACAAGTAAAACATACCGAT 59.629 38.462 0.00 0.00 0.00 4.18
4110 4665 2.046285 CCGATCCCAACCAGGCAAC 61.046 63.158 0.00 0.00 35.39 4.17
4172 4727 1.975680 AGAGTTTCTAGGCCAAACGGA 59.024 47.619 5.01 0.00 38.54 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
1 2 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
2 3 1.705256 TCAACGCGGTTGATGTAGTC 58.295 50.000 12.47 0.00 45.88 2.59
3 4 3.898380 TCAACGCGGTTGATGTAGT 57.102 47.368 12.47 0.00 45.88 2.73
34 35 2.317530 ACCCTTGAAGATCGCTAAGC 57.682 50.000 0.00 0.00 0.00 3.09
35 36 5.201713 TCATACCCTTGAAGATCGCTAAG 57.798 43.478 0.00 0.00 0.00 2.18
36 37 5.607939 TTCATACCCTTGAAGATCGCTAA 57.392 39.130 0.00 0.00 32.07 3.09
59 60 1.134848 AGCAACGAGAGGAAGAGCATC 60.135 52.381 0.00 0.00 0.00 3.91
60 61 0.901124 AGCAACGAGAGGAAGAGCAT 59.099 50.000 0.00 0.00 0.00 3.79
61 62 1.545841 TAGCAACGAGAGGAAGAGCA 58.454 50.000 0.00 0.00 0.00 4.26
62 63 2.468831 CATAGCAACGAGAGGAAGAGC 58.531 52.381 0.00 0.00 0.00 4.09
63 64 2.159184 TGCATAGCAACGAGAGGAAGAG 60.159 50.000 0.00 0.00 34.76 2.85
64 65 1.824852 TGCATAGCAACGAGAGGAAGA 59.175 47.619 0.00 0.00 34.76 2.87
65 66 2.299993 TGCATAGCAACGAGAGGAAG 57.700 50.000 0.00 0.00 34.76 3.46
66 67 2.432146 AGATGCATAGCAACGAGAGGAA 59.568 45.455 0.00 0.00 43.62 3.36
67 68 2.034878 AGATGCATAGCAACGAGAGGA 58.965 47.619 0.00 0.00 43.62 3.71
68 69 2.402305 GAGATGCATAGCAACGAGAGG 58.598 52.381 0.00 0.00 43.62 3.69
69 70 2.223900 TGGAGATGCATAGCAACGAGAG 60.224 50.000 0.00 0.00 43.62 3.20
70 71 1.756538 TGGAGATGCATAGCAACGAGA 59.243 47.619 0.00 0.00 43.62 4.04
71 72 2.229675 TGGAGATGCATAGCAACGAG 57.770 50.000 0.00 0.00 43.62 4.18
72 73 2.486918 CATGGAGATGCATAGCAACGA 58.513 47.619 0.00 0.00 43.62 3.85
73 74 1.534163 CCATGGAGATGCATAGCAACG 59.466 52.381 5.56 0.00 43.62 4.10
74 75 2.854963 TCCATGGAGATGCATAGCAAC 58.145 47.619 11.44 0.00 43.62 4.17
75 76 3.801307 ATCCATGGAGATGCATAGCAA 57.199 42.857 21.33 0.00 43.62 3.91
76 77 4.098894 TCTATCCATGGAGATGCATAGCA 58.901 43.478 21.33 3.76 44.86 3.49
77 78 4.750021 TCTATCCATGGAGATGCATAGC 57.250 45.455 21.33 0.00 32.28 2.97
78 79 6.734502 AGATCTATCCATGGAGATGCATAG 57.265 41.667 21.33 15.06 33.17 2.23
79 80 6.631992 GCAAGATCTATCCATGGAGATGCATA 60.632 42.308 21.39 8.30 32.47 3.14
80 81 5.746284 CAAGATCTATCCATGGAGATGCAT 58.254 41.667 21.33 0.00 32.47 3.96
81 82 4.565028 GCAAGATCTATCCATGGAGATGCA 60.565 45.833 21.39 6.23 32.47 3.96
82 83 3.940221 GCAAGATCTATCCATGGAGATGC 59.060 47.826 21.33 17.34 32.47 3.91
83 84 4.182339 CGCAAGATCTATCCATGGAGATG 58.818 47.826 21.33 11.34 43.02 2.90
84 85 3.837146 ACGCAAGATCTATCCATGGAGAT 59.163 43.478 21.33 17.64 43.62 2.75
85 86 3.006217 CACGCAAGATCTATCCATGGAGA 59.994 47.826 21.33 15.39 43.62 3.71
86 87 3.244009 ACACGCAAGATCTATCCATGGAG 60.244 47.826 21.33 7.68 43.62 3.86
87 88 2.700371 ACACGCAAGATCTATCCATGGA 59.300 45.455 18.88 18.88 43.62 3.41
88 89 2.804527 CACACGCAAGATCTATCCATGG 59.195 50.000 4.97 4.97 43.62 3.66
89 90 2.222678 GCACACGCAAGATCTATCCATG 59.777 50.000 0.00 0.00 43.62 3.66
90 91 2.487934 GCACACGCAAGATCTATCCAT 58.512 47.619 0.00 0.00 43.62 3.41
91 92 1.802508 CGCACACGCAAGATCTATCCA 60.803 52.381 0.00 0.00 43.62 3.41
92 93 0.855349 CGCACACGCAAGATCTATCC 59.145 55.000 0.00 0.00 43.62 2.59
93 94 1.560923 ACGCACACGCAAGATCTATC 58.439 50.000 0.00 0.00 45.53 2.08
94 95 2.357952 TCTACGCACACGCAAGATCTAT 59.642 45.455 0.00 0.00 45.53 1.98
95 96 1.741145 TCTACGCACACGCAAGATCTA 59.259 47.619 0.00 0.00 45.53 1.98
96 97 0.526211 TCTACGCACACGCAAGATCT 59.474 50.000 0.00 0.00 45.53 2.75
97 98 1.346365 TTCTACGCACACGCAAGATC 58.654 50.000 0.00 0.00 45.53 2.75
98 99 1.790755 TTTCTACGCACACGCAAGAT 58.209 45.000 0.00 0.00 45.53 2.40
99 100 1.790755 ATTTCTACGCACACGCAAGA 58.209 45.000 0.00 0.00 45.53 3.02
100 101 2.594529 AATTTCTACGCACACGCAAG 57.405 45.000 0.00 0.00 45.53 4.01
101 102 3.341857 AAAATTTCTACGCACACGCAA 57.658 38.095 0.00 0.00 45.53 4.85
102 103 3.341857 AAAAATTTCTACGCACACGCA 57.658 38.095 0.00 0.00 45.53 5.24
119 120 5.811100 GGGAACGTAACATGGAAAACAAAAA 59.189 36.000 0.00 0.00 0.00 1.94
120 121 5.349809 GGGAACGTAACATGGAAAACAAAA 58.650 37.500 0.00 0.00 0.00 2.44
121 122 4.202131 GGGGAACGTAACATGGAAAACAAA 60.202 41.667 0.00 0.00 0.00 2.83
122 123 3.318557 GGGGAACGTAACATGGAAAACAA 59.681 43.478 0.00 0.00 0.00 2.83
123 124 2.885894 GGGGAACGTAACATGGAAAACA 59.114 45.455 0.00 0.00 0.00 2.83
124 125 2.885894 TGGGGAACGTAACATGGAAAAC 59.114 45.455 0.00 0.00 0.00 2.43
125 126 3.225177 TGGGGAACGTAACATGGAAAA 57.775 42.857 0.00 0.00 0.00 2.29
126 127 2.885894 GTTGGGGAACGTAACATGGAAA 59.114 45.455 0.00 0.00 0.00 3.13
127 128 2.158652 TGTTGGGGAACGTAACATGGAA 60.159 45.455 0.00 0.00 34.49 3.53
128 129 1.420514 TGTTGGGGAACGTAACATGGA 59.579 47.619 0.00 0.00 34.49 3.41
129 130 1.810151 CTGTTGGGGAACGTAACATGG 59.190 52.381 1.56 0.00 37.42 3.66
130 131 2.742053 CTCTGTTGGGGAACGTAACATG 59.258 50.000 1.56 0.00 37.42 3.21
131 132 2.290071 CCTCTGTTGGGGAACGTAACAT 60.290 50.000 1.56 0.00 37.42 2.71
132 133 1.071071 CCTCTGTTGGGGAACGTAACA 59.929 52.381 1.25 1.25 36.85 2.41
133 134 1.804601 CCTCTGTTGGGGAACGTAAC 58.195 55.000 0.00 0.00 0.00 2.50
134 135 0.035739 GCCTCTGTTGGGGAACGTAA 59.964 55.000 0.00 0.00 0.00 3.18
135 136 1.675219 GCCTCTGTTGGGGAACGTA 59.325 57.895 0.00 0.00 0.00 3.57
136 137 2.430367 GCCTCTGTTGGGGAACGT 59.570 61.111 0.00 0.00 0.00 3.99
137 138 2.742372 CGCCTCTGTTGGGGAACG 60.742 66.667 0.00 0.00 41.89 3.95
138 139 2.359975 CCGCCTCTGTTGGGGAAC 60.360 66.667 0.00 0.00 41.89 3.62
139 140 4.344865 GCCGCCTCTGTTGGGGAA 62.345 66.667 0.00 0.00 41.89 3.97
142 143 4.473520 ATCGCCGCCTCTGTTGGG 62.474 66.667 0.00 0.00 0.00 4.12
143 144 3.197790 CATCGCCGCCTCTGTTGG 61.198 66.667 0.00 0.00 0.00 3.77
144 145 2.434884 ACATCGCCGCCTCTGTTG 60.435 61.111 0.00 0.00 0.00 3.33
145 146 1.884075 TACACATCGCCGCCTCTGTT 61.884 55.000 0.00 0.00 0.00 3.16
146 147 2.284798 CTACACATCGCCGCCTCTGT 62.285 60.000 0.00 0.00 0.00 3.41
147 148 1.589993 CTACACATCGCCGCCTCTG 60.590 63.158 0.00 0.00 0.00 3.35
148 149 2.786495 CCTACACATCGCCGCCTCT 61.786 63.158 0.00 0.00 0.00 3.69
154 155 2.408050 CATAGCTTCCTACACATCGCC 58.592 52.381 0.00 0.00 0.00 5.54
157 158 2.408050 CGCCATAGCTTCCTACACATC 58.592 52.381 0.00 0.00 36.60 3.06
179 181 2.169144 GCTTTGCCAATCCTAGCCATTT 59.831 45.455 0.00 0.00 0.00 2.32
182 184 0.332632 AGCTTTGCCAATCCTAGCCA 59.667 50.000 0.00 0.00 32.36 4.75
183 185 0.743097 CAGCTTTGCCAATCCTAGCC 59.257 55.000 0.00 0.00 32.36 3.93
210 213 4.744795 AATACTCACTCCTGGTCATCAC 57.255 45.455 0.00 0.00 0.00 3.06
221 224 6.045318 TGCTCATAGCTTCAAATACTCACTC 58.955 40.000 0.00 0.00 42.97 3.51
227 230 4.991056 TCCGATGCTCATAGCTTCAAATAC 59.009 41.667 13.25 0.00 43.25 1.89
232 235 3.194329 CCTATCCGATGCTCATAGCTTCA 59.806 47.826 13.25 0.00 43.25 3.02
241 244 3.008485 AGGGAAAATCCTATCCGATGCTC 59.992 47.826 0.00 0.00 36.57 4.26
260 263 7.962918 CGTTGAACTTAACAAGAATTCATAGGG 59.037 37.037 8.44 0.00 0.00 3.53
263 266 9.268268 AGACGTTGAACTTAACAAGAATTCATA 57.732 29.630 8.44 0.00 0.00 2.15
294 297 3.583276 CTGCCGCCCTACAACGTCA 62.583 63.158 0.00 0.00 0.00 4.35
325 328 3.309296 ACGTGGGAGACATCATTCCTAT 58.691 45.455 0.00 0.00 33.85 2.57
368 371 1.153289 CCTCCAAGGATGCTGGACG 60.153 63.158 0.00 0.00 38.07 4.79
376 379 0.401738 CACACACACCCTCCAAGGAT 59.598 55.000 0.00 0.00 37.67 3.24
379 382 0.250467 CTCCACACACACCCTCCAAG 60.250 60.000 0.00 0.00 0.00 3.61
410 413 1.137086 ACCGAATCTCACAAGATCGGG 59.863 52.381 15.87 13.15 46.13 5.14
416 419 2.494059 ACACCAACCGAATCTCACAAG 58.506 47.619 0.00 0.00 0.00 3.16
418 421 2.158885 TCAACACCAACCGAATCTCACA 60.159 45.455 0.00 0.00 0.00 3.58
419 422 2.489971 TCAACACCAACCGAATCTCAC 58.510 47.619 0.00 0.00 0.00 3.51
420 423 2.920724 TCAACACCAACCGAATCTCA 57.079 45.000 0.00 0.00 0.00 3.27
422 425 3.703001 AGATCAACACCAACCGAATCT 57.297 42.857 0.00 0.00 0.00 2.40
431 434 1.052617 TCCACCGAAGATCAACACCA 58.947 50.000 0.00 0.00 0.00 4.17
454 457 3.506067 ACAAATGAAGACGGGATCCAAAC 59.494 43.478 15.23 3.61 0.00 2.93
462 466 3.708563 AAACACACAAATGAAGACGGG 57.291 42.857 0.00 0.00 0.00 5.28
464 468 8.948853 AATATGTAAACACACAAATGAAGACG 57.051 30.769 0.00 0.00 30.84 4.18
525 530 3.810941 CCAACGAACTAAAGTAGCAACCA 59.189 43.478 0.00 0.00 0.00 3.67
528 533 4.060205 GGACCAACGAACTAAAGTAGCAA 58.940 43.478 0.00 0.00 0.00 3.91
533 538 4.377897 CTCAAGGACCAACGAACTAAAGT 58.622 43.478 0.00 0.00 0.00 2.66
536 541 2.549349 GCCTCAAGGACCAACGAACTAA 60.549 50.000 0.00 0.00 37.39 2.24
571 576 8.732746 ACTTTGTTGTAGTAGACTGTTGAAAT 57.267 30.769 0.00 0.00 0.00 2.17
579 584 5.681639 AGGCAAACTTTGTTGTAGTAGACT 58.318 37.500 3.48 0.00 0.00 3.24
602 607 1.962402 GCTCTTCCCTCACTGGAGCTA 60.962 57.143 0.00 0.00 43.92 3.32
652 657 7.674772 ACCACCTAGAGATGACTAAAAGTACTT 59.325 37.037 1.12 1.12 0.00 2.24
726 732 9.483916 TTTCAATCCATTCATAATCAATCATGC 57.516 29.630 0.00 0.00 0.00 4.06
770 776 5.714806 TGTCATTCTTGGGGAAAATTCTACC 59.285 40.000 0.00 0.00 37.49 3.18
771 777 6.834168 TGTCATTCTTGGGGAAAATTCTAC 57.166 37.500 0.00 0.00 37.49 2.59
784 790 3.698040 CCTTCCTCCCAATGTCATTCTTG 59.302 47.826 0.00 0.00 0.00 3.02
795 801 1.623811 CGTCTTCTTCCTTCCTCCCAA 59.376 52.381 0.00 0.00 0.00 4.12
801 807 1.540707 ACTCGTCGTCTTCTTCCTTCC 59.459 52.381 0.00 0.00 0.00 3.46
833 840 4.540359 TGGGCCAAAATGATCTTCTTTG 57.460 40.909 2.13 1.42 0.00 2.77
864 871 0.943359 TGCGAAAAATGCAAAGCCCG 60.943 50.000 0.00 0.00 39.87 6.13
942 952 6.591448 GGGAAGATGGATTTGTTTAGCTTTTG 59.409 38.462 0.00 0.00 0.00 2.44
943 953 6.572314 CGGGAAGATGGATTTGTTTAGCTTTT 60.572 38.462 0.00 0.00 0.00 2.27
944 954 5.105756 CGGGAAGATGGATTTGTTTAGCTTT 60.106 40.000 0.00 0.00 0.00 3.51
945 955 4.399303 CGGGAAGATGGATTTGTTTAGCTT 59.601 41.667 0.00 0.00 0.00 3.74
946 956 3.947834 CGGGAAGATGGATTTGTTTAGCT 59.052 43.478 0.00 0.00 0.00 3.32
947 957 3.694566 ACGGGAAGATGGATTTGTTTAGC 59.305 43.478 0.00 0.00 0.00 3.09
948 958 5.186198 AGACGGGAAGATGGATTTGTTTAG 58.814 41.667 0.00 0.00 0.00 1.85
949 959 5.045869 AGAGACGGGAAGATGGATTTGTTTA 60.046 40.000 0.00 0.00 0.00 2.01
950 960 4.010349 GAGACGGGAAGATGGATTTGTTT 58.990 43.478 0.00 0.00 0.00 2.83
951 961 3.264450 AGAGACGGGAAGATGGATTTGTT 59.736 43.478 0.00 0.00 0.00 2.83
952 962 2.840651 AGAGACGGGAAGATGGATTTGT 59.159 45.455 0.00 0.00 0.00 2.83
957 967 0.397254 GGGAGAGACGGGAAGATGGA 60.397 60.000 0.00 0.00 0.00 3.41
960 970 0.688087 GTGGGGAGAGACGGGAAGAT 60.688 60.000 0.00 0.00 0.00 2.40
1167 1186 0.460459 GGAGCTCGAAGTTGTAGGCC 60.460 60.000 7.83 0.00 0.00 5.19
1794 1813 1.425066 AGCACACCAAGAAAGGGATCA 59.575 47.619 0.00 0.00 0.00 2.92
1983 2002 1.301637 CATGAGCACCACCGTGTGA 60.302 57.895 5.71 0.00 42.39 3.58
2100 2119 1.302511 GAGCACCGGCCTCTTGAAA 60.303 57.895 13.84 0.00 42.56 2.69
2148 2167 0.701731 CCCACCACCCAGGAACATAA 59.298 55.000 0.00 0.00 41.22 1.90
2211 2230 3.620488 AGTTCCTGAAGCTGAACAACAA 58.380 40.909 14.87 0.00 42.57 2.83
2222 2241 3.891366 ACCATTTCCACAAGTTCCTGAAG 59.109 43.478 0.00 0.00 0.00 3.02
2259 2278 4.439153 CCAAAATCATCTCCACCACAATCG 60.439 45.833 0.00 0.00 0.00 3.34
2352 2371 2.681778 CTCTCGCCAGTGGAGGGT 60.682 66.667 15.20 0.00 32.34 4.34
2480 2499 1.459592 ACGCTAAATGCAAGACGTGTC 59.540 47.619 0.00 0.00 43.06 3.67
2499 2518 5.890334 TGGAAATCACTGAAACTGACAAAC 58.110 37.500 0.00 0.00 0.00 2.93
2529 2550 7.920682 AGCTTGTGAATTTAAACTGGTTACTTG 59.079 33.333 0.00 0.00 0.00 3.16
2572 2593 3.315191 GCAAAAATCCGCTCTATGGCTAA 59.685 43.478 0.00 0.00 0.00 3.09
2574 2595 1.678101 GCAAAAATCCGCTCTATGGCT 59.322 47.619 0.00 0.00 0.00 4.75
2602 2623 7.044052 GCAAAAGAACACTACAATTCACTGAAC 60.044 37.037 0.00 0.00 0.00 3.18
2631 2652 6.621316 TTTTCATTTCACTTACACGCCTTA 57.379 33.333 0.00 0.00 0.00 2.69
2723 2744 7.178712 ACATCAAGAGAAAACTTTACAGACG 57.821 36.000 0.00 0.00 0.00 4.18
2751 2772 6.368243 TCTCTCTATACCGACTATGCTAAACG 59.632 42.308 0.00 0.00 0.00 3.60
2780 2801 3.451178 CCTCTCCGGAAACTAAGATTCCA 59.549 47.826 5.23 0.00 45.44 3.53
2797 2822 2.371510 CTCATTCCCCTCCAATCCTCTC 59.628 54.545 0.00 0.00 0.00 3.20
2834 2859 5.240844 GGATTGAGGGGTATTAAATCCGTTG 59.759 44.000 0.00 0.00 37.58 4.10
2854 2879 2.649531 TGTTCGGTTTGGTGAGGATT 57.350 45.000 0.00 0.00 0.00 3.01
2877 2902 3.244526 ACCACACAGTTATGCACATGAGA 60.245 43.478 0.00 0.00 0.00 3.27
3124 3155 6.017605 CACTACTGCCTGCTAATTAGAATTGG 60.018 42.308 16.85 11.67 0.00 3.16
3175 3210 3.258372 TCTGTAACCTCAGCGATGTTTCT 59.742 43.478 0.00 0.00 35.63 2.52
3192 3227 3.958147 TGATATCTTGGTCGGCTTCTGTA 59.042 43.478 3.98 0.00 0.00 2.74
3195 3230 3.197766 TGTTGATATCTTGGTCGGCTTCT 59.802 43.478 3.98 0.00 0.00 2.85
3206 3241 5.513233 AGCCATGAAGGTTGTTGATATCTT 58.487 37.500 3.98 0.00 40.61 2.40
3253 3288 4.701651 TGAAGAATGACGATGCCAAGATTT 59.298 37.500 0.00 0.00 0.00 2.17
3330 3366 7.851228 TGATAAAGGAGCTCAGAGTATTTTGA 58.149 34.615 17.19 0.00 0.00 2.69
3360 3396 3.818210 ACATCGTACATTGGCTTGTTTGA 59.182 39.130 0.00 0.00 0.00 2.69
3361 3397 4.159377 ACATCGTACATTGGCTTGTTTG 57.841 40.909 0.00 0.00 0.00 2.93
3362 3398 4.037446 ACAACATCGTACATTGGCTTGTTT 59.963 37.500 0.00 0.00 0.00 2.83
3363 3399 3.568007 ACAACATCGTACATTGGCTTGTT 59.432 39.130 0.00 0.00 0.00 2.83
3470 3507 4.935352 TTTGGGGAAAGATTCAACAGTG 57.065 40.909 0.00 0.00 0.00 3.66
3475 3512 6.491714 TTTCACATTTGGGGAAAGATTCAA 57.508 33.333 0.00 0.00 0.00 2.69
3494 3531 3.144657 TCTGAGCCAAAGCAGATTTCA 57.855 42.857 0.00 0.00 43.56 2.69
3582 3931 5.247110 AGTTCTCTATGCCAGAAAACTGAGA 59.753 40.000 3.93 0.00 41.96 3.27
3583 3932 5.486526 AGTTCTCTATGCCAGAAAACTGAG 58.513 41.667 3.93 0.00 41.96 3.35
3585 3934 5.814705 CCTAGTTCTCTATGCCAGAAAACTG 59.185 44.000 12.21 0.00 43.12 3.16
3595 3944 2.432510 ACTGTGGCCTAGTTCTCTATGC 59.567 50.000 3.32 0.00 37.17 3.14
3599 3948 1.896465 GTCACTGTGGCCTAGTTCTCT 59.104 52.381 3.32 0.00 0.00 3.10
3600 3949 1.066787 GGTCACTGTGGCCTAGTTCTC 60.067 57.143 23.66 0.00 39.55 2.87
3601 3950 0.977395 GGTCACTGTGGCCTAGTTCT 59.023 55.000 23.66 0.00 39.55 3.01
3602 3951 3.534721 GGTCACTGTGGCCTAGTTC 57.465 57.895 23.66 4.49 39.55 3.01
3614 3963 2.743718 CGCTCCCAACAGGTCACT 59.256 61.111 0.00 0.00 36.75 3.41
3615 3964 2.185310 ATCCGCTCCCAACAGGTCAC 62.185 60.000 0.00 0.00 36.75 3.67
3616 3965 1.488705 AATCCGCTCCCAACAGGTCA 61.489 55.000 0.00 0.00 36.75 4.02
3617 3966 0.322546 AAATCCGCTCCCAACAGGTC 60.323 55.000 0.00 0.00 36.75 3.85
3618 3967 0.322546 GAAATCCGCTCCCAACAGGT 60.323 55.000 0.00 0.00 36.75 4.00
3619 3968 0.035056 AGAAATCCGCTCCCAACAGG 60.035 55.000 0.00 0.00 0.00 4.00
3620 3969 2.555199 CTAGAAATCCGCTCCCAACAG 58.445 52.381 0.00 0.00 0.00 3.16
3621 3970 1.406887 GCTAGAAATCCGCTCCCAACA 60.407 52.381 0.00 0.00 0.00 3.33
3622 3971 1.300481 GCTAGAAATCCGCTCCCAAC 58.700 55.000 0.00 0.00 0.00 3.77
3623 3972 0.179084 CGCTAGAAATCCGCTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
3624 3973 1.441729 CGCTAGAAATCCGCTCCCA 59.558 57.895 0.00 0.00 0.00 4.37
3625 3974 1.956678 GCGCTAGAAATCCGCTCCC 60.957 63.158 0.00 0.00 43.95 4.30
3626 3975 1.956678 GGCGCTAGAAATCCGCTCC 60.957 63.158 7.64 0.00 46.29 4.70
3627 3976 0.941936 GAGGCGCTAGAAATCCGCTC 60.942 60.000 7.64 0.00 46.29 5.03
3628 3977 1.068250 GAGGCGCTAGAAATCCGCT 59.932 57.895 7.64 0.00 46.29 5.52
3629 3978 0.810031 TTGAGGCGCTAGAAATCCGC 60.810 55.000 7.64 0.00 46.34 5.54
3630 3979 0.931005 GTTGAGGCGCTAGAAATCCG 59.069 55.000 7.64 0.00 0.00 4.18
3631 3980 1.300481 GGTTGAGGCGCTAGAAATCC 58.700 55.000 7.64 0.00 0.00 3.01
3632 3981 1.936547 CTGGTTGAGGCGCTAGAAATC 59.063 52.381 7.64 0.00 0.00 2.17
3633 3982 1.555075 TCTGGTTGAGGCGCTAGAAAT 59.445 47.619 7.64 0.00 0.00 2.17
3634 3983 0.973632 TCTGGTTGAGGCGCTAGAAA 59.026 50.000 7.64 0.00 0.00 2.52
3635 3984 1.134699 CATCTGGTTGAGGCGCTAGAA 60.135 52.381 7.64 0.00 0.00 2.10
3636 3985 0.461548 CATCTGGTTGAGGCGCTAGA 59.538 55.000 7.64 0.67 0.00 2.43
3637 3986 0.461548 TCATCTGGTTGAGGCGCTAG 59.538 55.000 7.64 0.00 0.00 3.42
3638 3987 1.123077 ATCATCTGGTTGAGGCGCTA 58.877 50.000 7.64 0.00 0.00 4.26
3639 3988 0.254178 AATCATCTGGTTGAGGCGCT 59.746 50.000 7.64 0.00 0.00 5.92
3640 3989 1.064654 GAAATCATCTGGTTGAGGCGC 59.935 52.381 0.00 0.00 0.00 6.53
3641 3990 1.672881 GGAAATCATCTGGTTGAGGCG 59.327 52.381 0.00 0.00 0.00 5.52
3642 3991 3.010200 AGGAAATCATCTGGTTGAGGC 57.990 47.619 0.00 0.00 0.00 4.70
3643 3992 4.853007 AGAAGGAAATCATCTGGTTGAGG 58.147 43.478 0.00 0.00 0.00 3.86
3644 3993 9.618890 TTTATAGAAGGAAATCATCTGGTTGAG 57.381 33.333 0.00 0.00 0.00 3.02
3645 3994 9.973661 TTTTATAGAAGGAAATCATCTGGTTGA 57.026 29.630 0.00 0.00 0.00 3.18
3647 3996 9.981460 ACTTTTATAGAAGGAAATCATCTGGTT 57.019 29.630 7.83 0.00 0.00 3.67
3657 4006 9.627123 CCCATGACATACTTTTATAGAAGGAAA 57.373 33.333 7.83 0.00 0.00 3.13
3658 4007 7.719633 GCCCATGACATACTTTTATAGAAGGAA 59.280 37.037 7.83 0.00 0.00 3.36
3659 4008 7.224297 GCCCATGACATACTTTTATAGAAGGA 58.776 38.462 7.83 0.00 0.00 3.36
3660 4009 6.147821 CGCCCATGACATACTTTTATAGAAGG 59.852 42.308 7.83 0.00 0.00 3.46
3661 4010 6.347725 GCGCCCATGACATACTTTTATAGAAG 60.348 42.308 0.00 1.56 0.00 2.85
3662 4011 5.468746 GCGCCCATGACATACTTTTATAGAA 59.531 40.000 0.00 0.00 0.00 2.10
3663 4012 4.994852 GCGCCCATGACATACTTTTATAGA 59.005 41.667 0.00 0.00 0.00 1.98
3664 4013 4.997395 AGCGCCCATGACATACTTTTATAG 59.003 41.667 2.29 0.00 0.00 1.31
3665 4014 4.968259 AGCGCCCATGACATACTTTTATA 58.032 39.130 2.29 0.00 0.00 0.98
3666 4015 3.820557 AGCGCCCATGACATACTTTTAT 58.179 40.909 2.29 0.00 0.00 1.40
3667 4016 3.275617 AGCGCCCATGACATACTTTTA 57.724 42.857 2.29 0.00 0.00 1.52
3668 4017 2.128771 AGCGCCCATGACATACTTTT 57.871 45.000 2.29 0.00 0.00 2.27
3669 4018 2.170607 ACTAGCGCCCATGACATACTTT 59.829 45.455 2.29 0.00 0.00 2.66
3670 4019 1.762957 ACTAGCGCCCATGACATACTT 59.237 47.619 2.29 0.00 0.00 2.24
3671 4020 1.069204 CACTAGCGCCCATGACATACT 59.931 52.381 2.29 0.00 0.00 2.12
3672 4021 1.502231 CACTAGCGCCCATGACATAC 58.498 55.000 2.29 0.00 0.00 2.39
3673 4022 0.249868 GCACTAGCGCCCATGACATA 60.250 55.000 2.29 0.00 0.00 2.29
3674 4023 1.524621 GCACTAGCGCCCATGACAT 60.525 57.895 2.29 0.00 0.00 3.06
3675 4024 2.125147 GCACTAGCGCCCATGACA 60.125 61.111 2.29 0.00 0.00 3.58
3683 4032 5.720332 ATGAGATCCATGAGCACTAGCGC 62.720 52.174 0.00 0.00 39.00 5.92
3684 4033 2.029200 ATGAGATCCATGAGCACTAGCG 60.029 50.000 0.00 0.00 39.00 4.26
3685 4034 3.681593 ATGAGATCCATGAGCACTAGC 57.318 47.619 0.00 0.00 35.94 3.42
3686 4035 8.618702 AAAAATATGAGATCCATGAGCACTAG 57.381 34.615 0.00 0.00 36.71 2.57
3687 4036 9.716531 CTAAAAATATGAGATCCATGAGCACTA 57.283 33.333 0.00 0.00 36.71 2.74
3688 4037 8.216423 ACTAAAAATATGAGATCCATGAGCACT 58.784 33.333 0.00 0.00 36.71 4.40
3689 4038 8.388484 ACTAAAAATATGAGATCCATGAGCAC 57.612 34.615 0.00 0.00 36.71 4.40
3690 4039 8.985315 AACTAAAAATATGAGATCCATGAGCA 57.015 30.769 0.00 0.00 36.71 4.26
3691 4040 9.890352 GAAACTAAAAATATGAGATCCATGAGC 57.110 33.333 0.00 0.00 36.71 4.26
3696 4045 9.396022 GTCAGGAAACTAAAAATATGAGATCCA 57.604 33.333 0.00 0.00 40.21 3.41
3697 4046 9.396022 TGTCAGGAAACTAAAAATATGAGATCC 57.604 33.333 0.00 0.00 40.21 3.36
3707 4056 8.508875 GGAACGATTATGTCAGGAAACTAAAAA 58.491 33.333 0.00 0.00 40.21 1.94
3708 4057 7.662258 TGGAACGATTATGTCAGGAAACTAAAA 59.338 33.333 0.00 0.00 40.21 1.52
3709 4058 7.162761 TGGAACGATTATGTCAGGAAACTAAA 58.837 34.615 0.00 0.00 40.21 1.85
3710 4059 6.703319 TGGAACGATTATGTCAGGAAACTAA 58.297 36.000 0.00 0.00 40.21 2.24
3711 4060 6.070995 ACTGGAACGATTATGTCAGGAAACTA 60.071 38.462 0.00 0.00 40.21 2.24
3712 4061 5.160607 TGGAACGATTATGTCAGGAAACT 57.839 39.130 0.00 0.00 46.44 2.66
3713 4062 4.935808 ACTGGAACGATTATGTCAGGAAAC 59.064 41.667 0.00 0.00 0.00 2.78
3714 4063 4.935205 CACTGGAACGATTATGTCAGGAAA 59.065 41.667 0.00 0.00 0.00 3.13
3715 4064 4.221924 TCACTGGAACGATTATGTCAGGAA 59.778 41.667 0.00 0.00 0.00 3.36
3716 4065 3.767131 TCACTGGAACGATTATGTCAGGA 59.233 43.478 0.00 0.00 0.00 3.86
3717 4066 4.123497 TCACTGGAACGATTATGTCAGG 57.877 45.455 0.00 0.00 0.00 3.86
3718 4067 6.313658 TGAAATCACTGGAACGATTATGTCAG 59.686 38.462 0.00 0.00 31.65 3.51
3719 4068 6.169800 TGAAATCACTGGAACGATTATGTCA 58.830 36.000 0.00 0.00 31.65 3.58
3720 4069 6.662414 TGAAATCACTGGAACGATTATGTC 57.338 37.500 0.00 0.00 31.65 3.06
3721 4070 6.403636 GCTTGAAATCACTGGAACGATTATGT 60.404 38.462 0.00 0.00 31.65 2.29
3722 4071 5.967674 GCTTGAAATCACTGGAACGATTATG 59.032 40.000 0.00 0.00 31.65 1.90
3723 4072 5.882557 AGCTTGAAATCACTGGAACGATTAT 59.117 36.000 0.00 0.00 31.65 1.28
3724 4073 5.122239 CAGCTTGAAATCACTGGAACGATTA 59.878 40.000 0.00 0.00 31.65 1.75
3725 4074 4.074970 AGCTTGAAATCACTGGAACGATT 58.925 39.130 0.00 0.00 33.27 3.34
3726 4075 3.438087 CAGCTTGAAATCACTGGAACGAT 59.562 43.478 0.00 0.00 0.00 3.73
3727 4076 2.807967 CAGCTTGAAATCACTGGAACGA 59.192 45.455 0.00 0.00 0.00 3.85
3728 4077 2.807967 TCAGCTTGAAATCACTGGAACG 59.192 45.455 0.00 0.00 0.00 3.95
3729 4078 6.690194 ATATCAGCTTGAAATCACTGGAAC 57.310 37.500 0.00 0.00 0.00 3.62
3730 4079 7.394077 TCAAATATCAGCTTGAAATCACTGGAA 59.606 33.333 0.00 0.00 0.00 3.53
3731 4080 6.885918 TCAAATATCAGCTTGAAATCACTGGA 59.114 34.615 0.00 0.00 0.00 3.86
3732 4081 6.971184 GTCAAATATCAGCTTGAAATCACTGG 59.029 38.462 0.00 0.00 33.52 4.00
3733 4082 6.685828 CGTCAAATATCAGCTTGAAATCACTG 59.314 38.462 0.00 0.00 33.52 3.66
3734 4083 6.595326 TCGTCAAATATCAGCTTGAAATCACT 59.405 34.615 0.00 0.00 33.52 3.41
3781 4153 0.253044 TGACAGCCACTCATAAGCCC 59.747 55.000 0.00 0.00 0.00 5.19
3782 4154 2.113860 TTGACAGCCACTCATAAGCC 57.886 50.000 0.00 0.00 0.00 4.35
3797 4169 1.538047 TGGGAGCAGCTGATTTTGAC 58.462 50.000 20.43 0.00 0.00 3.18
3800 4172 1.999648 TGTTGGGAGCAGCTGATTTT 58.000 45.000 20.43 0.00 0.00 1.82
3801 4173 2.226962 ATGTTGGGAGCAGCTGATTT 57.773 45.000 20.43 0.93 0.00 2.17
3802 4174 3.370840 TTATGTTGGGAGCAGCTGATT 57.629 42.857 20.43 4.00 0.00 2.57
3803 4175 3.370840 TTTATGTTGGGAGCAGCTGAT 57.629 42.857 20.43 12.64 0.00 2.90
3805 4177 4.460948 AATTTTATGTTGGGAGCAGCTG 57.539 40.909 10.11 10.11 0.00 4.24
3806 4178 6.796785 ATAAATTTTATGTTGGGAGCAGCT 57.203 33.333 0.00 0.00 0.00 4.24
3807 4179 7.267857 AGAATAAATTTTATGTTGGGAGCAGC 58.732 34.615 0.00 0.00 0.00 5.25
3843 4233 9.810870 TTAGTAGGCTTTTAGAATACCCAAAAA 57.189 29.630 0.00 0.00 0.00 1.94
3844 4234 9.984590 ATTAGTAGGCTTTTAGAATACCCAAAA 57.015 29.630 0.00 0.00 0.00 2.44
3845 4235 9.984590 AATTAGTAGGCTTTTAGAATACCCAAA 57.015 29.630 0.00 0.00 0.00 3.28
3875 4265 9.261180 GCTGAAATGAGTGTATGCTAGTTAATA 57.739 33.333 0.00 0.00 0.00 0.98
3880 4270 5.089970 TGCTGAAATGAGTGTATGCTAGT 57.910 39.130 0.00 0.00 0.00 2.57
3885 4275 5.618056 ACTGTTGCTGAAATGAGTGTATG 57.382 39.130 0.00 0.00 0.00 2.39
3887 4277 7.744087 ATTAACTGTTGCTGAAATGAGTGTA 57.256 32.000 2.69 0.00 0.00 2.90
3889 4279 6.583806 GGAATTAACTGTTGCTGAAATGAGTG 59.416 38.462 2.69 0.00 0.00 3.51
3890 4280 6.491403 AGGAATTAACTGTTGCTGAAATGAGT 59.509 34.615 2.69 0.00 0.00 3.41
3894 4284 6.899393 TCAGGAATTAACTGTTGCTGAAAT 57.101 33.333 8.52 0.00 46.47 2.17
3898 4288 3.498397 ACGTCAGGAATTAACTGTTGCTG 59.502 43.478 2.69 3.20 43.69 4.41
3899 4289 3.740115 ACGTCAGGAATTAACTGTTGCT 58.260 40.909 2.69 0.00 37.25 3.91
3914 4304 2.028930 AGAAACCTGCTTCCTACGTCAG 60.029 50.000 0.00 0.00 0.00 3.51
3915 4305 1.968493 AGAAACCTGCTTCCTACGTCA 59.032 47.619 0.00 0.00 0.00 4.35
3916 4306 2.745515 AGAAACCTGCTTCCTACGTC 57.254 50.000 0.00 0.00 0.00 4.34
3917 4307 3.428532 TCTAGAAACCTGCTTCCTACGT 58.571 45.455 0.00 0.00 0.00 3.57
3918 4308 4.451629 TTCTAGAAACCTGCTTCCTACG 57.548 45.455 1.68 0.00 0.00 3.51
3919 4309 5.978814 TCATTCTAGAAACCTGCTTCCTAC 58.021 41.667 9.71 0.00 0.00 3.18
3920 4310 6.620877 TTCATTCTAGAAACCTGCTTCCTA 57.379 37.500 9.71 0.00 0.00 2.94
3921 4311 5.505181 TTCATTCTAGAAACCTGCTTCCT 57.495 39.130 9.71 0.00 0.00 3.36
3931 4321 7.039993 GCCCAACCTAAAGTTTCATTCTAGAAA 60.040 37.037 9.71 0.00 36.18 2.52
3932 4322 6.433093 GCCCAACCTAAAGTTTCATTCTAGAA 59.567 38.462 7.82 7.82 36.18 2.10
3933 4323 5.944007 GCCCAACCTAAAGTTTCATTCTAGA 59.056 40.000 0.00 0.00 36.18 2.43
3934 4324 5.946377 AGCCCAACCTAAAGTTTCATTCTAG 59.054 40.000 0.00 0.00 36.18 2.43
3942 4482 2.381752 AGCAGCCCAACCTAAAGTTT 57.618 45.000 0.00 0.00 36.18 2.66
3945 4485 1.340017 TGCTAGCAGCCCAACCTAAAG 60.340 52.381 14.93 0.00 41.51 1.85
3950 4490 1.762708 TTTATGCTAGCAGCCCAACC 58.237 50.000 23.89 0.00 41.51 3.77
3956 4496 3.503748 CCTACCCATTTTATGCTAGCAGC 59.496 47.826 23.89 0.00 42.82 5.25
3964 4504 2.812011 GCTACCGCCTACCCATTTTATG 59.188 50.000 0.00 0.00 0.00 1.90
3971 4511 1.797320 AATAAGCTACCGCCTACCCA 58.203 50.000 0.00 0.00 36.60 4.51
3979 4519 3.006940 TGGCTGTCAAAATAAGCTACCG 58.993 45.455 0.00 0.00 37.12 4.02
4011 4551 4.501400 GCAACTTATGGCCAGTTCTTTTGT 60.501 41.667 13.05 0.00 31.83 2.83
4042 4582 2.133281 TGGCTCTGCAAATATGTGCT 57.867 45.000 18.64 0.00 45.17 4.40
4043 4583 2.945447 TTGGCTCTGCAAATATGTGC 57.055 45.000 11.21 11.21 45.15 4.57
4044 4584 5.761726 TCTCTATTGGCTCTGCAAATATGTG 59.238 40.000 0.52 0.00 34.44 3.21
4059 4604 4.760530 TGTTGACTCCCATCTCTATTGG 57.239 45.455 0.00 0.00 0.00 3.16
4074 4619 6.402875 GGGATCGGTATGTTTTACTTGTTGAC 60.403 42.308 0.00 0.00 0.00 3.18
4093 4638 2.046285 GGTTGCCTGGTTGGGATCG 61.046 63.158 0.00 0.00 35.58 3.69
4096 4651 1.076549 GATGGTTGCCTGGTTGGGA 59.923 57.895 0.00 0.00 36.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.