Multiple sequence alignment - TraesCS6D01G370300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G370300 chr6D 100.000 4531 0 0 1 4531 456459044 456454514 0.000000e+00 8368.0
1 TraesCS6D01G370300 chr6D 93.750 80 4 1 2750 2828 456456257 456456178 7.960000e-23 119.0
2 TraesCS6D01G370300 chr6D 93.750 80 4 1 2788 2867 456456295 456456217 7.960000e-23 119.0
3 TraesCS6D01G370300 chr6D 91.892 74 5 1 4260 4332 456454712 456454639 8.020000e-18 102.0
4 TraesCS6D01G370300 chr6D 91.892 74 5 1 4333 4406 456454785 456454713 8.020000e-18 102.0
5 TraesCS6D01G370300 chr6B 91.403 2466 154 30 399 2828 694120135 694117692 0.000000e+00 3326.0
6 TraesCS6D01G370300 chr6B 84.360 1413 114 66 2957 4312 694117685 694116323 0.000000e+00 1286.0
7 TraesCS6D01G370300 chr6B 87.931 406 36 7 1 397 694120900 694120499 2.470000e-127 466.0
8 TraesCS6D01G370300 chr6B 100.000 36 0 0 4447 4482 694116271 694116236 2.930000e-07 67.6
9 TraesCS6D01G370300 chr6A 91.104 1675 120 23 1 1653 603187421 603185754 0.000000e+00 2241.0
10 TraesCS6D01G370300 chr6A 91.327 761 54 7 3107 3860 603184308 603183553 0.000000e+00 1029.0
11 TraesCS6D01G370300 chr6A 94.872 429 20 2 1753 2179 603185710 603185282 0.000000e+00 669.0
12 TraesCS6D01G370300 chr6A 96.481 341 7 5 2177 2517 603185178 603184843 3.960000e-155 558.0
13 TraesCS6D01G370300 chr6A 92.593 324 9 6 2516 2828 603184761 603184442 6.910000e-123 451.0
14 TraesCS6D01G370300 chr6A 79.688 384 20 29 3954 4305 603183468 603183111 1.640000e-54 224.0
15 TraesCS6D01G370300 chr2A 97.059 102 1 2 2865 2966 597850514 597850415 2.170000e-38 171.0
16 TraesCS6D01G370300 chr2A 100.000 88 0 0 2872 2959 767023989 767024076 3.630000e-36 163.0
17 TraesCS6D01G370300 chr2A 100.000 88 0 0 2872 2959 767144233 767144146 3.630000e-36 163.0
18 TraesCS6D01G370300 chr2A 95.918 98 2 2 2872 2969 708044879 708044974 1.690000e-34 158.0
19 TraesCS6D01G370300 chr1B 96.078 102 4 0 2867 2968 623737806 623737705 2.800000e-37 167.0
20 TraesCS6D01G370300 chr2D 95.146 103 4 1 2868 2970 22958483 22958382 1.300000e-35 161.0
21 TraesCS6D01G370300 chr2B 95.050 101 5 0 2859 2959 335192829 335192929 4.690000e-35 159.0
22 TraesCS6D01G370300 chr7A 96.842 95 2 1 2866 2959 20732918 20733012 1.690000e-34 158.0
23 TraesCS6D01G370300 chr4D 94.231 104 4 2 2873 2975 465765251 465765353 1.690000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G370300 chr6D 456454514 456459044 4530 True 8368.0 8368 100.000000 1 4531 1 chr6D.!!$R1 4530
1 TraesCS6D01G370300 chr6B 694116236 694120900 4664 True 1286.4 3326 90.923500 1 4482 4 chr6B.!!$R1 4481
2 TraesCS6D01G370300 chr6A 603183111 603187421 4310 True 862.0 2241 91.010833 1 4305 6 chr6A.!!$R1 4304

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.401105 AGCCCCTGCAGTGATCCTAT 60.401 55.000 13.81 0.0 41.13 2.57 F
642 1022 1.794151 CTGGCAATCACCAACGTGCA 61.794 55.000 0.00 0.0 39.86 4.57 F
980 1371 2.024369 GGTGGATTCCAAGGGGTAATGT 60.024 50.000 7.05 0.0 34.18 2.71 F
2889 3504 1.347378 TGTTGTACCCCCTCCGTAAAC 59.653 52.381 0.00 0.0 0.00 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1882 2290 2.929641 TCACTGCAAAGTTCATCCACA 58.070 42.857 0.00 0.00 0.00 4.17 R
2454 2973 0.878416 GACATTAAACCAGCGGTGCA 59.122 50.000 9.63 0.00 35.34 4.57 R
2968 3583 2.534396 CCAGGTTGGGGCACAGGTA 61.534 63.158 0.00 0.00 32.67 3.08 R
3754 4393 0.096976 CGCCACCATCGATGAAACAC 59.903 55.000 26.86 10.57 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.979809 ACTCCATGTGGTCCCCATTA 58.020 50.000 0.00 0.00 35.28 1.90
32 33 6.326064 TCCATGTGGTCCCCATTATTAAAATG 59.674 38.462 0.00 4.38 35.28 2.32
130 131 2.361070 GGGTCCCCCTCTAGAACCATAA 60.361 54.545 11.71 0.00 39.83 1.90
138 139 2.438392 CTCTAGAACCATAACCCCACCC 59.562 54.545 0.00 0.00 0.00 4.61
170 171 2.405892 GCACACAGCGAATTGAACTT 57.594 45.000 0.00 0.00 0.00 2.66
191 192 2.027385 CTTTCCATTCTTAGCCCCTGC 58.973 52.381 0.00 0.00 37.95 4.85
193 194 0.548031 TCCATTCTTAGCCCCTGCAG 59.452 55.000 6.78 6.78 41.13 4.41
202 203 0.401105 AGCCCCTGCAGTGATCCTAT 60.401 55.000 13.81 0.00 41.13 2.57
220 224 8.896744 TGATCCTATCACATCTTTGCTTAAAAG 58.103 33.333 0.00 0.00 39.53 2.27
236 240 7.882179 TGCTTAAAAGTTTAATCCCTGTTCTC 58.118 34.615 0.00 0.00 32.69 2.87
238 242 5.959618 AAAAGTTTAATCCCTGTTCTCCG 57.040 39.130 0.00 0.00 0.00 4.63
241 245 5.437191 AGTTTAATCCCTGTTCTCCGATT 57.563 39.130 0.00 0.00 0.00 3.34
242 246 5.429130 AGTTTAATCCCTGTTCTCCGATTC 58.571 41.667 0.00 0.00 0.00 2.52
243 247 4.417426 TTAATCCCTGTTCTCCGATTCC 57.583 45.455 0.00 0.00 0.00 3.01
244 248 1.879575 ATCCCTGTTCTCCGATTCCA 58.120 50.000 0.00 0.00 0.00 3.53
251 258 2.159099 TGTTCTCCGATTCCATTCTCCG 60.159 50.000 0.00 0.00 0.00 4.63
270 277 6.320171 TCTCCGAAGAAACAAGTAAGTATCG 58.680 40.000 0.00 0.00 0.00 2.92
272 279 6.860080 TCCGAAGAAACAAGTAAGTATCGAT 58.140 36.000 2.16 2.16 0.00 3.59
275 282 9.888878 CCGAAGAAACAAGTAAGTATCGATATA 57.111 33.333 8.66 0.00 0.00 0.86
324 334 6.818644 GCAGAATCCACATCAAGTTACTCTTA 59.181 38.462 0.00 0.00 34.66 2.10
325 335 7.497249 GCAGAATCCACATCAAGTTACTCTTAT 59.503 37.037 0.00 0.00 34.66 1.73
368 378 9.730420 GTCTGATTTCTCTCTCAGATTAGTTAC 57.270 37.037 5.63 0.00 46.89 2.50
382 392 7.386848 TCAGATTAGTTACTTGTTTTCCCTTCG 59.613 37.037 0.00 0.00 0.00 3.79
385 399 7.486802 TTAGTTACTTGTTTTCCCTTCGAAG 57.513 36.000 18.51 18.51 0.00 3.79
397 411 7.668525 TTTCCCTTCGAAGAAAGAAGATTAC 57.331 36.000 26.61 0.00 45.78 1.89
417 793 8.936864 AGATTACTTATTGGTTCTTCTGTTTCG 58.063 33.333 0.00 0.00 0.00 3.46
422 798 8.340443 ACTTATTGGTTCTTCTGTTTCGTTAAC 58.660 33.333 0.00 0.00 37.26 2.01
425 801 6.833342 TGGTTCTTCTGTTTCGTTAACTAC 57.167 37.500 3.71 0.20 37.64 2.73
456 832 2.346803 GAAACTGCTGCAATAGTCGGA 58.653 47.619 3.02 0.00 0.00 4.55
622 1002 9.724839 GTTTACTTGCAGTCTCTAGAAGTATAG 57.275 37.037 0.00 0.00 31.09 1.31
631 1011 6.208599 AGTCTCTAGAAGTATAGCTGGCAATC 59.791 42.308 0.00 0.00 0.00 2.67
637 1017 3.545703 AGTATAGCTGGCAATCACCAAC 58.454 45.455 0.00 0.00 39.86 3.77
642 1022 1.794151 CTGGCAATCACCAACGTGCA 61.794 55.000 0.00 0.00 39.86 4.57
654 1034 3.005684 ACCAACGTGCAATTCACATCATT 59.994 39.130 0.00 0.00 45.92 2.57
658 1038 6.310956 CCAACGTGCAATTCACATCATTATTT 59.689 34.615 0.00 0.00 45.92 1.40
752 1132 4.506758 CTGATTTGCTATTTGGGGGTTTG 58.493 43.478 0.00 0.00 0.00 2.93
804 1192 5.845985 TTGTAGAAGACAAATTCTCGCTG 57.154 39.130 0.00 0.00 45.23 5.18
835 1223 3.545703 CTGGGAAAATAAGACGCTCCAT 58.454 45.455 0.00 0.00 0.00 3.41
862 1250 3.138304 TCAACGATTGAACAAGACCAGG 58.862 45.455 0.00 0.00 36.59 4.45
877 1265 8.712228 ACAAGACCAGGAAAAATATTTCTTCT 57.288 30.769 0.10 0.00 43.65 2.85
879 1267 8.796475 CAAGACCAGGAAAAATATTTCTTCTCA 58.204 33.333 0.10 0.00 43.65 3.27
895 1283 5.006386 TCTTCTCAGATTTCCTTTCCAAGC 58.994 41.667 0.00 0.00 0.00 4.01
941 1330 7.284034 ACACTTCCCAATGATATGATCAAAGAC 59.716 37.037 0.00 0.00 43.50 3.01
980 1371 2.024369 GGTGGATTCCAAGGGGTAATGT 60.024 50.000 7.05 0.00 34.18 2.71
981 1372 3.023832 GTGGATTCCAAGGGGTAATGTG 58.976 50.000 7.05 0.00 34.18 3.21
1104 1495 7.894364 ACAGTTCCTAGTTTTCCAGAGTATAGA 59.106 37.037 0.00 0.00 0.00 1.98
1125 1516 8.738645 ATAGAACATCTTACATTGAAAGGGAC 57.261 34.615 0.00 0.00 0.00 4.46
1153 1544 4.202121 GCGGTAGTTCTATCACCTCATTCA 60.202 45.833 0.00 0.00 0.00 2.57
1204 1595 6.492772 AGCTTCCAATTTCACTTCAGATCTTT 59.507 34.615 0.00 0.00 0.00 2.52
1218 1609 7.121759 ACTTCAGATCTTTGTATCAACAATGGG 59.878 37.037 0.00 0.00 44.85 4.00
1248 1639 4.731313 AGGGAAACTGTCTTTTGGATCT 57.269 40.909 0.00 0.00 0.00 2.75
1461 1852 2.041701 AGCCAACAAAGCCAAGACATT 58.958 42.857 0.00 0.00 0.00 2.71
1591 1982 6.566079 AGGTATCCATCTCATTTGACTGAA 57.434 37.500 0.00 0.00 0.00 3.02
1597 1988 7.764141 TCCATCTCATTTGACTGAATTTTCA 57.236 32.000 0.00 0.00 35.57 2.69
1610 2001 5.754890 ACTGAATTTTCACTTGTGATTTGCC 59.245 36.000 4.18 0.00 32.90 4.52
1698 2090 3.524095 TGACCAACCCTTCATCATTGT 57.476 42.857 0.00 0.00 0.00 2.71
1704 2096 6.731467 ACCAACCCTTCATCATTGTACTTAT 58.269 36.000 0.00 0.00 0.00 1.73
1705 2097 7.182060 ACCAACCCTTCATCATTGTACTTATT 58.818 34.615 0.00 0.00 0.00 1.40
1706 2098 8.333235 ACCAACCCTTCATCATTGTACTTATTA 58.667 33.333 0.00 0.00 0.00 0.98
1707 2099 8.840321 CCAACCCTTCATCATTGTACTTATTAG 58.160 37.037 0.00 0.00 0.00 1.73
1783 2191 3.560481 TGTTGAATTTTGGCACATGCTTG 59.440 39.130 3.48 0.00 39.30 4.01
1832 2240 3.441572 AGCTGATGCAAATACAACACCTC 59.558 43.478 0.00 0.00 42.74 3.85
1869 2277 5.549742 TTTCATGGGCAGAAAAACAGATT 57.450 34.783 0.00 0.00 32.47 2.40
2078 2486 6.620678 TCTTGCGCTTTATTTTCTGCTAATT 58.379 32.000 9.73 0.00 0.00 1.40
2081 2489 6.847400 TGCGCTTTATTTTCTGCTAATTGTA 58.153 32.000 9.73 0.00 0.00 2.41
2103 2511 4.553323 ACTTTGCTCACTGATGAAATTGC 58.447 39.130 0.00 0.00 33.30 3.56
2143 2551 8.091449 TGCTTTTGAACCGGAAATATTAACATT 58.909 29.630 9.46 0.00 0.00 2.71
2179 2587 7.202016 ACAGTCATGTTGGTATTTGTTGTAG 57.798 36.000 0.00 0.00 35.63 2.74
2181 2589 7.284489 ACAGTCATGTTGGTATTTGTTGTAGTT 59.716 33.333 0.00 0.00 35.63 2.24
2182 2590 7.591057 CAGTCATGTTGGTATTTGTTGTAGTTG 59.409 37.037 0.00 0.00 0.00 3.16
2188 2700 8.926710 TGTTGGTATTTGTTGTAGTTGTTTTTG 58.073 29.630 0.00 0.00 0.00 2.44
2425 2944 4.012374 ACAGTTCGCCATCAATCTGAATT 58.988 39.130 0.00 0.00 0.00 2.17
2454 2973 6.545666 TGATGGTTTGTGTGTTTCTCTATGTT 59.454 34.615 0.00 0.00 0.00 2.71
2753 3358 8.958060 TCTTTACCTGATACTATATCCTTGCT 57.042 34.615 0.00 0.00 0.00 3.91
2754 3359 9.381038 TCTTTACCTGATACTATATCCTTGCTT 57.619 33.333 0.00 0.00 0.00 3.91
2782 3387 8.928270 ATACTATTGTAAAGACTTCCTTGACG 57.072 34.615 0.00 0.00 38.81 4.35
2783 3388 6.756221 ACTATTGTAAAGACTTCCTTGACGT 58.244 36.000 0.00 0.00 38.81 4.34
2784 3389 7.889469 ACTATTGTAAAGACTTCCTTGACGTA 58.111 34.615 0.00 0.00 38.81 3.57
2785 3390 8.362639 ACTATTGTAAAGACTTCCTTGACGTAA 58.637 33.333 0.00 0.00 38.81 3.18
2786 3391 9.199982 CTATTGTAAAGACTTCCTTGACGTAAA 57.800 33.333 0.00 0.00 38.81 2.01
2801 3406 9.061610 CCTTGACGTAAATTGCTTTTATTACTG 57.938 33.333 0.00 0.00 32.56 2.74
2873 3488 9.825972 AGATTGTCTTGACGTAAATTTATGTTG 57.174 29.630 21.10 14.97 33.27 3.33
2874 3489 9.607285 GATTGTCTTGACGTAAATTTATGTTGT 57.393 29.630 21.10 9.13 33.27 3.32
2876 3491 9.866936 TTGTCTTGACGTAAATTTATGTTGTAC 57.133 29.630 21.10 16.70 33.27 2.90
2877 3492 8.497554 TGTCTTGACGTAAATTTATGTTGTACC 58.502 33.333 21.10 10.67 33.27 3.34
2878 3493 7.959109 GTCTTGACGTAAATTTATGTTGTACCC 59.041 37.037 21.10 10.07 33.27 3.69
2879 3494 6.740411 TGACGTAAATTTATGTTGTACCCC 57.260 37.500 21.10 9.49 33.27 4.95
2880 3495 5.647225 TGACGTAAATTTATGTTGTACCCCC 59.353 40.000 21.10 8.89 33.27 5.40
2881 3496 5.818887 ACGTAAATTTATGTTGTACCCCCT 58.181 37.500 15.84 0.00 28.86 4.79
2882 3497 5.882000 ACGTAAATTTATGTTGTACCCCCTC 59.118 40.000 15.84 0.00 28.86 4.30
2883 3498 5.297527 CGTAAATTTATGTTGTACCCCCTCC 59.702 44.000 8.96 0.00 0.00 4.30
2884 3499 3.570912 ATTTATGTTGTACCCCCTCCG 57.429 47.619 0.00 0.00 0.00 4.63
2885 3500 1.955451 TTATGTTGTACCCCCTCCGT 58.045 50.000 0.00 0.00 0.00 4.69
2886 3501 2.844654 TATGTTGTACCCCCTCCGTA 57.155 50.000 0.00 0.00 0.00 4.02
2887 3502 1.955451 ATGTTGTACCCCCTCCGTAA 58.045 50.000 0.00 0.00 0.00 3.18
2888 3503 1.727062 TGTTGTACCCCCTCCGTAAA 58.273 50.000 0.00 0.00 0.00 2.01
2889 3504 1.347378 TGTTGTACCCCCTCCGTAAAC 59.653 52.381 0.00 0.00 0.00 2.01
2890 3505 1.625315 GTTGTACCCCCTCCGTAAACT 59.375 52.381 0.00 0.00 0.00 2.66
2891 3506 2.831526 GTTGTACCCCCTCCGTAAACTA 59.168 50.000 0.00 0.00 0.00 2.24
2892 3507 3.182887 TGTACCCCCTCCGTAAACTAA 57.817 47.619 0.00 0.00 0.00 2.24
2893 3508 3.723325 TGTACCCCCTCCGTAAACTAAT 58.277 45.455 0.00 0.00 0.00 1.73
2894 3509 4.877773 TGTACCCCCTCCGTAAACTAATA 58.122 43.478 0.00 0.00 0.00 0.98
2895 3510 5.466819 TGTACCCCCTCCGTAAACTAATAT 58.533 41.667 0.00 0.00 0.00 1.28
2896 3511 6.619464 TGTACCCCCTCCGTAAACTAATATA 58.381 40.000 0.00 0.00 0.00 0.86
2897 3512 7.072562 TGTACCCCCTCCGTAAACTAATATAA 58.927 38.462 0.00 0.00 0.00 0.98
2898 3513 6.676990 ACCCCCTCCGTAAACTAATATAAG 57.323 41.667 0.00 0.00 0.00 1.73
2899 3514 6.384603 ACCCCCTCCGTAAACTAATATAAGA 58.615 40.000 0.00 0.00 0.00 2.10
2900 3515 6.496218 ACCCCCTCCGTAAACTAATATAAGAG 59.504 42.308 0.00 0.00 0.00 2.85
2901 3516 6.396450 CCCCTCCGTAAACTAATATAAGAGC 58.604 44.000 0.00 0.00 0.00 4.09
2902 3517 6.091437 CCCTCCGTAAACTAATATAAGAGCG 58.909 44.000 0.00 0.00 0.00 5.03
2903 3518 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2904 3519 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2905 3520 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2906 3521 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2907 3522 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2908 3523 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2922 3537 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
2923 3538 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
2924 3539 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
2925 3540 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
2926 3541 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
2932 3547 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
2933 3548 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
2934 3549 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
2935 3550 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2936 3551 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2937 3552 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2938 3553 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
2953 3568 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2954 3569 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2955 3570 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2977 3592 7.098074 GGAGTATATATGTACTACCTGTGCC 57.902 44.000 11.69 4.30 35.14 5.01
3011 3627 5.858381 AGATATGTATGCCACAGTAACCTG 58.142 41.667 0.00 0.00 41.51 4.00
3025 3641 6.076981 CAGTAACCTGTTTTTGCTTCAGAT 57.923 37.500 0.00 0.00 33.80 2.90
3031 3647 5.239525 ACCTGTTTTTGCTTCAGATGTACTC 59.760 40.000 0.00 0.00 0.00 2.59
3066 3693 1.870055 GCAATGCCCTGTCCACAGTG 61.870 60.000 5.99 0.00 42.27 3.66
3071 3698 0.886490 GCCCTGTCCACAGTGAAGTG 60.886 60.000 0.62 0.00 42.27 3.16
3073 3700 1.586422 CCTGTCCACAGTGAAGTGTG 58.414 55.000 10.71 10.71 46.32 3.82
3075 3702 1.935873 CTGTCCACAGTGAAGTGTGTG 59.064 52.381 15.31 8.38 45.47 3.82
3077 3704 1.665679 GTCCACAGTGAAGTGTGTGTG 59.334 52.381 15.31 2.96 45.47 3.82
3079 3706 1.398041 CCACAGTGAAGTGTGTGTGTG 59.602 52.381 15.31 0.00 45.47 3.82
3081 3708 2.076100 ACAGTGAAGTGTGTGTGTGTG 58.924 47.619 0.00 0.00 0.00 3.82
3083 3710 2.076100 AGTGAAGTGTGTGTGTGTGTG 58.924 47.619 0.00 0.00 0.00 3.82
3084 3711 1.804151 GTGAAGTGTGTGTGTGTGTGT 59.196 47.619 0.00 0.00 0.00 3.72
3085 3712 1.803555 TGAAGTGTGTGTGTGTGTGTG 59.196 47.619 0.00 0.00 0.00 3.82
3086 3713 1.804151 GAAGTGTGTGTGTGTGTGTGT 59.196 47.619 0.00 0.00 0.00 3.72
3087 3714 1.155889 AGTGTGTGTGTGTGTGTGTG 58.844 50.000 0.00 0.00 0.00 3.82
3088 3715 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3089 3716 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3090 3717 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3091 3718 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3092 3719 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3093 3720 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3094 3721 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3095 3722 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3096 3723 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3097 3724 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3098 3725 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3099 3726 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3100 3727 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3101 3728 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3258 3889 1.349026 TCTCCTTGGAACTGGCAAGAG 59.651 52.381 0.00 0.00 0.00 2.85
3268 3899 2.669569 GGCAAGAGAAGGCGTGCA 60.670 61.111 0.00 0.00 43.59 4.57
3269 3900 2.684843 GGCAAGAGAAGGCGTGCAG 61.685 63.158 0.00 0.00 43.59 4.41
3303 3935 9.939802 TCTATTTTAGTAACTTGGGTTCTCTTC 57.060 33.333 0.00 0.00 36.92 2.87
3577 4216 5.157067 GCAAACAAAAGGAGCTGATTAGAC 58.843 41.667 0.00 0.00 0.00 2.59
3579 4218 3.600388 ACAAAAGGAGCTGATTAGACCG 58.400 45.455 0.00 0.00 0.00 4.79
3699 4338 6.403866 TGCTACACAGATTTTTGATTTGGT 57.596 33.333 0.00 0.00 0.00 3.67
3704 4343 5.218885 CACAGATTTTTGATTTGGTACGCA 58.781 37.500 0.00 0.00 0.00 5.24
3724 4363 5.675970 CGCAGAACGTTTCTTTCTTCATAA 58.324 37.500 0.46 0.00 38.11 1.90
3726 4365 6.427150 GCAGAACGTTTCTTTCTTCATAACA 58.573 36.000 0.46 0.00 38.11 2.41
3743 4382 9.764870 CTTCATAACAAAACTATGATCACAGTG 57.235 33.333 7.56 0.00 36.05 3.66
3754 4393 8.932945 ACTATGATCACAGTGTAGTTTATGTG 57.067 34.615 5.68 0.00 43.44 3.21
3761 4400 6.819146 TCACAGTGTAGTTTATGTGTGTTTCA 59.181 34.615 0.00 0.00 42.80 2.69
3769 4408 5.705441 AGTTTATGTGTGTTTCATCGATGGT 59.295 36.000 24.61 3.65 0.00 3.55
3770 4409 5.544136 TTATGTGTGTTTCATCGATGGTG 57.456 39.130 24.61 1.35 0.00 4.17
3777 4416 4.889856 CATCGATGGTGGCGCCGA 62.890 66.667 23.90 14.57 41.21 5.54
3787 4426 2.203015 GGCGCCGACATACATGGT 60.203 61.111 12.58 0.00 0.00 3.55
3799 4438 3.258123 ACATACATGGTTGGCCTGTTTTC 59.742 43.478 3.32 0.00 35.27 2.29
3800 4439 2.086610 ACATGGTTGGCCTGTTTTCT 57.913 45.000 3.32 0.00 35.27 2.52
3854 4498 4.884164 GGCTTTGTATTTACCTCTCTGCAT 59.116 41.667 0.00 0.00 0.00 3.96
3860 4504 5.663106 TGTATTTACCTCTCTGCATCTCCTT 59.337 40.000 0.00 0.00 0.00 3.36
3861 4505 4.478206 TTTACCTCTCTGCATCTCCTTG 57.522 45.455 0.00 0.00 0.00 3.61
3862 4506 1.949799 ACCTCTCTGCATCTCCTTGT 58.050 50.000 0.00 0.00 0.00 3.16
3869 4527 3.334691 TCTGCATCTCCTTGTAAAACCG 58.665 45.455 0.00 0.00 0.00 4.44
3871 4529 1.132453 GCATCTCCTTGTAAAACCGGC 59.868 52.381 0.00 0.00 0.00 6.13
3872 4530 2.432444 CATCTCCTTGTAAAACCGGCA 58.568 47.619 0.00 0.00 0.00 5.69
3879 4537 3.697045 CCTTGTAAAACCGGCAATGGATA 59.303 43.478 0.00 0.00 0.00 2.59
3886 4544 5.467035 AAACCGGCAATGGATAATATTGG 57.533 39.130 0.00 0.00 36.33 3.16
3900 4558 7.777440 TGGATAATATTGGCATTACTGTCACAA 59.223 33.333 0.00 0.00 36.53 3.33
3901 4559 8.796475 GGATAATATTGGCATTACTGTCACAAT 58.204 33.333 0.00 0.00 36.53 2.71
3916 4577 8.595362 ACTGTCACAATATATATAGGCTGCTA 57.405 34.615 0.00 0.00 0.00 3.49
3917 4578 9.206690 ACTGTCACAATATATATAGGCTGCTAT 57.793 33.333 0.00 0.00 0.00 2.97
3918 4579 9.473640 CTGTCACAATATATATAGGCTGCTATG 57.526 37.037 0.00 0.00 0.00 2.23
3919 4580 8.424133 TGTCACAATATATATAGGCTGCTATGG 58.576 37.037 0.00 0.00 0.00 2.74
3920 4581 7.386299 GTCACAATATATATAGGCTGCTATGGC 59.614 40.741 0.00 0.00 39.26 4.40
3927 4588 3.547567 GGCTGCTATGGCCTATGAG 57.452 57.895 3.32 0.00 45.57 2.90
3928 4589 0.676151 GGCTGCTATGGCCTATGAGC 60.676 60.000 3.32 8.06 45.57 4.26
3929 4590 0.035881 GCTGCTATGGCCTATGAGCA 59.964 55.000 16.87 16.87 42.47 4.26
3930 4591 1.544093 GCTGCTATGGCCTATGAGCAA 60.544 52.381 17.94 6.74 43.94 3.91
3931 4592 2.149578 CTGCTATGGCCTATGAGCAAC 58.850 52.381 17.94 0.00 43.94 4.17
3932 4593 1.490069 TGCTATGGCCTATGAGCAACA 59.510 47.619 15.92 0.00 41.78 3.33
3933 4594 1.876156 GCTATGGCCTATGAGCAACAC 59.124 52.381 3.32 0.00 34.96 3.32
3934 4595 2.746142 GCTATGGCCTATGAGCAACACA 60.746 50.000 3.32 0.00 34.96 3.72
3935 4596 2.512692 ATGGCCTATGAGCAACACAA 57.487 45.000 3.32 0.00 0.00 3.33
3936 4597 1.825090 TGGCCTATGAGCAACACAAG 58.175 50.000 3.32 0.00 0.00 3.16
3937 4598 1.350684 TGGCCTATGAGCAACACAAGA 59.649 47.619 3.32 0.00 0.00 3.02
3938 4599 1.740025 GGCCTATGAGCAACACAAGAC 59.260 52.381 0.00 0.00 0.00 3.01
3939 4600 2.426522 GCCTATGAGCAACACAAGACA 58.573 47.619 0.00 0.00 0.00 3.41
3940 4601 2.813754 GCCTATGAGCAACACAAGACAA 59.186 45.455 0.00 0.00 0.00 3.18
3941 4602 3.365364 GCCTATGAGCAACACAAGACAAC 60.365 47.826 0.00 0.00 0.00 3.32
3942 4603 3.814842 CCTATGAGCAACACAAGACAACA 59.185 43.478 0.00 0.00 0.00 3.33
3943 4604 4.456911 CCTATGAGCAACACAAGACAACAT 59.543 41.667 0.00 0.00 0.00 2.71
3944 4605 3.696281 TGAGCAACACAAGACAACATG 57.304 42.857 0.00 0.00 0.00 3.21
3945 4606 3.277715 TGAGCAACACAAGACAACATGA 58.722 40.909 0.00 0.00 0.00 3.07
3965 4630 1.599047 CTCACGGCCTGTCTGGAAT 59.401 57.895 0.00 0.00 38.35 3.01
3971 4636 0.682209 GGCCTGTCTGGAATGCATGT 60.682 55.000 0.00 0.00 38.35 3.21
3974 4639 2.940971 GCCTGTCTGGAATGCATGTGTA 60.941 50.000 0.00 0.00 38.35 2.90
3975 4640 2.679837 CCTGTCTGGAATGCATGTGTAC 59.320 50.000 0.00 0.00 38.35 2.90
3980 4646 5.097529 GTCTGGAATGCATGTGTACATTTG 58.902 41.667 0.00 0.97 36.65 2.32
4019 4686 6.779117 CACAGGAGTGCTTTATTTGATACTG 58.221 40.000 0.00 0.00 39.21 2.74
4028 4695 6.138761 GCTTTATTTGATACTGCTTGATCCG 58.861 40.000 0.00 0.00 0.00 4.18
4088 4757 5.745312 ACAGACATACATCTTGGACAGAA 57.255 39.130 0.00 0.00 34.16 3.02
4102 4771 2.560105 GGACAGAAATGAGGCAAGCTTT 59.440 45.455 0.00 0.00 0.00 3.51
4273 4969 3.801997 CAGCCCGCCCTGGATCTT 61.802 66.667 0.00 0.00 42.00 2.40
4275 4971 4.918201 GCCCGCCCTGGATCTTCG 62.918 72.222 0.00 0.00 42.00 3.79
4276 4972 3.154473 CCCGCCCTGGATCTTCGA 61.154 66.667 0.00 0.00 42.00 3.71
4279 4975 0.811616 CCGCCCTGGATCTTCGAAAG 60.812 60.000 0.00 0.00 42.00 2.62
4297 4993 6.772078 TCGAAAGAAGAAGAAAAACAGTGTC 58.228 36.000 0.00 0.00 37.03 3.67
4319 5015 1.798735 CACATAGCTGTGCCTGTGC 59.201 57.895 10.79 0.00 45.79 4.57
4320 5016 1.742880 ACATAGCTGTGCCTGTGCG 60.743 57.895 10.79 0.00 41.78 5.34
4321 5017 1.742880 CATAGCTGTGCCTGTGCGT 60.743 57.895 0.00 0.00 41.78 5.24
4322 5018 0.460109 CATAGCTGTGCCTGTGCGTA 60.460 55.000 0.00 0.00 41.78 4.42
4323 5019 0.465705 ATAGCTGTGCCTGTGCGTAT 59.534 50.000 0.00 0.00 41.78 3.06
4324 5020 0.179111 TAGCTGTGCCTGTGCGTATC 60.179 55.000 0.00 0.00 41.78 2.24
4325 5021 1.448540 GCTGTGCCTGTGCGTATCT 60.449 57.895 0.00 0.00 41.78 1.98
4327 5023 1.442769 CTGTGCCTGTGCGTATCTTT 58.557 50.000 0.00 0.00 41.78 2.52
4328 5024 1.806542 CTGTGCCTGTGCGTATCTTTT 59.193 47.619 0.00 0.00 41.78 2.27
4329 5025 1.535028 TGTGCCTGTGCGTATCTTTTG 59.465 47.619 0.00 0.00 41.78 2.44
4331 5027 1.804151 TGCCTGTGCGTATCTTTTGAC 59.196 47.619 0.00 0.00 41.78 3.18
4332 5028 1.130561 GCCTGTGCGTATCTTTTGACC 59.869 52.381 0.00 0.00 0.00 4.02
4333 5029 1.737793 CCTGTGCGTATCTTTTGACCC 59.262 52.381 0.00 0.00 0.00 4.46
4334 5030 1.737793 CTGTGCGTATCTTTTGACCCC 59.262 52.381 0.00 0.00 0.00 4.95
4336 5032 1.022451 TGCGTATCTTTTGACCCCGC 61.022 55.000 0.00 0.00 40.32 6.13
4337 5033 1.712018 GCGTATCTTTTGACCCCGCC 61.712 60.000 0.00 0.00 36.67 6.13
4338 5034 1.093496 CGTATCTTTTGACCCCGCCC 61.093 60.000 0.00 0.00 0.00 6.13
4339 5035 0.255033 GTATCTTTTGACCCCGCCCT 59.745 55.000 0.00 0.00 0.00 5.19
4340 5036 0.254747 TATCTTTTGACCCCGCCCTG 59.745 55.000 0.00 0.00 0.00 4.45
4342 5038 3.179339 TTTTGACCCCGCCCTGGA 61.179 61.111 0.00 0.00 42.00 3.86
4343 5039 2.499303 CTTTTGACCCCGCCCTGGAT 62.499 60.000 0.00 0.00 42.00 3.41
4344 5040 2.493273 TTTTGACCCCGCCCTGGATC 62.493 60.000 0.00 0.00 42.00 3.36
4345 5041 3.943137 TTGACCCCGCCCTGGATCT 62.943 63.158 0.00 0.00 42.00 2.75
4346 5042 3.090532 GACCCCGCCCTGGATCTT 61.091 66.667 0.00 0.00 42.00 2.40
4347 5043 2.614013 ACCCCGCCCTGGATCTTT 60.614 61.111 0.00 0.00 42.00 2.52
4348 5044 2.211468 GACCCCGCCCTGGATCTTTT 62.211 60.000 0.00 0.00 42.00 2.27
4349 5045 1.453928 CCCCGCCCTGGATCTTTTC 60.454 63.158 0.00 0.00 42.00 2.29
4350 5046 1.453928 CCCGCCCTGGATCTTTTCC 60.454 63.158 0.00 0.00 45.69 3.13
4365 5061 7.716612 GGATCTTTTCCAGAAGAAGAAAAACA 58.283 34.615 0.00 0.00 44.74 2.83
4366 5062 7.864882 GGATCTTTTCCAGAAGAAGAAAAACAG 59.135 37.037 0.00 0.00 44.74 3.16
4367 5063 7.703058 TCTTTTCCAGAAGAAGAAAAACAGT 57.297 32.000 0.00 0.00 40.44 3.55
4368 5064 7.538575 TCTTTTCCAGAAGAAGAAAAACAGTG 58.461 34.615 0.00 0.00 40.44 3.66
4369 5065 6.834168 TTTCCAGAAGAAGAAAAACAGTGT 57.166 33.333 0.00 0.00 35.40 3.55
4370 5066 6.436843 TTCCAGAAGAAGAAAAACAGTGTC 57.563 37.500 0.00 0.00 0.00 3.67
4371 5067 5.496556 TCCAGAAGAAGAAAAACAGTGTCA 58.503 37.500 0.00 0.00 0.00 3.58
4372 5068 5.943416 TCCAGAAGAAGAAAAACAGTGTCAA 59.057 36.000 0.00 0.00 0.00 3.18
4373 5069 6.432783 TCCAGAAGAAGAAAAACAGTGTCAAA 59.567 34.615 0.00 0.00 0.00 2.69
4374 5070 6.528072 CCAGAAGAAGAAAAACAGTGTCAAAC 59.472 38.462 0.00 0.00 0.00 2.93
4375 5071 7.083858 CAGAAGAAGAAAAACAGTGTCAAACA 58.916 34.615 0.00 0.00 0.00 2.83
4393 5089 2.462456 CACATAGCTGTGTCCTGTGT 57.538 50.000 13.83 0.00 46.33 3.72
4394 5090 2.071540 CACATAGCTGTGTCCTGTGTG 58.928 52.381 13.83 0.00 46.33 3.82
4395 5091 1.694150 ACATAGCTGTGTCCTGTGTGT 59.306 47.619 10.73 0.00 34.07 3.72
4396 5092 2.897326 ACATAGCTGTGTCCTGTGTGTA 59.103 45.455 10.73 0.00 34.07 2.90
4397 5093 3.515502 ACATAGCTGTGTCCTGTGTGTAT 59.484 43.478 10.73 0.00 34.07 2.29
4398 5094 2.751166 AGCTGTGTCCTGTGTGTATC 57.249 50.000 0.00 0.00 0.00 2.24
4399 5095 2.251818 AGCTGTGTCCTGTGTGTATCT 58.748 47.619 0.00 0.00 0.00 1.98
4400 5096 2.634940 AGCTGTGTCCTGTGTGTATCTT 59.365 45.455 0.00 0.00 0.00 2.40
4401 5097 3.071602 AGCTGTGTCCTGTGTGTATCTTT 59.928 43.478 0.00 0.00 0.00 2.52
4402 5098 3.815401 GCTGTGTCCTGTGTGTATCTTTT 59.185 43.478 0.00 0.00 0.00 2.27
4403 5099 4.319766 GCTGTGTCCTGTGTGTATCTTTTG 60.320 45.833 0.00 0.00 0.00 2.44
4404 5100 5.029807 TGTGTCCTGTGTGTATCTTTTGA 57.970 39.130 0.00 0.00 0.00 2.69
4405 5101 4.814234 TGTGTCCTGTGTGTATCTTTTGAC 59.186 41.667 0.00 0.00 0.00 3.18
4406 5102 4.055360 TGTCCTGTGTGTATCTTTTGACG 58.945 43.478 0.00 0.00 0.00 4.35
4407 5103 4.202172 TGTCCTGTGTGTATCTTTTGACGA 60.202 41.667 0.00 0.00 0.00 4.20
4408 5104 4.748102 GTCCTGTGTGTATCTTTTGACGAA 59.252 41.667 0.00 0.00 0.00 3.85
4409 5105 4.748102 TCCTGTGTGTATCTTTTGACGAAC 59.252 41.667 0.00 0.00 0.00 3.95
4410 5106 4.750098 CCTGTGTGTATCTTTTGACGAACT 59.250 41.667 0.00 0.00 0.00 3.01
4411 5107 5.924254 CCTGTGTGTATCTTTTGACGAACTA 59.076 40.000 0.00 0.00 0.00 2.24
4412 5108 6.089551 CCTGTGTGTATCTTTTGACGAACTAG 59.910 42.308 0.00 0.00 0.00 2.57
4413 5109 5.404366 TGTGTGTATCTTTTGACGAACTAGC 59.596 40.000 0.00 0.00 0.00 3.42
4414 5110 5.634020 GTGTGTATCTTTTGACGAACTAGCT 59.366 40.000 0.00 0.00 0.00 3.32
4415 5111 5.633601 TGTGTATCTTTTGACGAACTAGCTG 59.366 40.000 0.00 0.00 0.00 4.24
4416 5112 5.634020 GTGTATCTTTTGACGAACTAGCTGT 59.366 40.000 0.00 0.00 0.00 4.40
4417 5113 5.633601 TGTATCTTTTGACGAACTAGCTGTG 59.366 40.000 0.00 0.00 0.00 3.66
4418 5114 4.054780 TCTTTTGACGAACTAGCTGTGT 57.945 40.909 0.00 0.00 0.00 3.72
4419 5115 3.802139 TCTTTTGACGAACTAGCTGTGTG 59.198 43.478 0.00 0.00 0.00 3.82
4420 5116 1.497991 TTGACGAACTAGCTGTGTGC 58.502 50.000 0.00 0.00 43.29 4.57
4421 5117 0.387565 TGACGAACTAGCTGTGTGCA 59.612 50.000 0.00 0.00 45.94 4.57
4422 5118 1.000843 TGACGAACTAGCTGTGTGCAT 59.999 47.619 0.00 0.00 45.94 3.96
4423 5119 1.656095 GACGAACTAGCTGTGTGCATC 59.344 52.381 0.00 0.00 45.94 3.91
4424 5120 1.000843 ACGAACTAGCTGTGTGCATCA 59.999 47.619 0.00 0.00 45.94 3.07
4425 5121 2.274437 CGAACTAGCTGTGTGCATCAT 58.726 47.619 0.00 0.00 45.94 2.45
4426 5122 2.283617 CGAACTAGCTGTGTGCATCATC 59.716 50.000 0.00 0.00 45.94 2.92
4427 5123 3.264947 GAACTAGCTGTGTGCATCATCA 58.735 45.455 0.00 0.00 45.94 3.07
4428 5124 3.555527 ACTAGCTGTGTGCATCATCAT 57.444 42.857 0.00 0.00 45.94 2.45
4429 5125 3.203716 ACTAGCTGTGTGCATCATCATG 58.796 45.455 0.00 0.00 45.94 3.07
4430 5126 2.124277 AGCTGTGTGCATCATCATGT 57.876 45.000 0.00 0.00 45.94 3.21
4431 5127 3.271055 AGCTGTGTGCATCATCATGTA 57.729 42.857 0.00 0.00 45.94 2.29
4432 5128 2.941064 AGCTGTGTGCATCATCATGTAC 59.059 45.455 0.00 0.00 43.88 2.90
4433 5129 2.286008 GCTGTGTGCATCATCATGTACG 60.286 50.000 0.00 0.00 45.91 3.67
4434 5130 2.931969 CTGTGTGCATCATCATGTACGT 59.068 45.455 0.00 0.00 45.91 3.57
4435 5131 4.111916 CTGTGTGCATCATCATGTACGTA 58.888 43.478 0.00 0.00 45.91 3.57
4436 5132 4.692228 TGTGTGCATCATCATGTACGTAT 58.308 39.130 0.00 0.00 45.91 3.06
4437 5133 4.507388 TGTGTGCATCATCATGTACGTATG 59.493 41.667 0.00 0.00 45.91 2.39
4438 5134 4.507756 GTGTGCATCATCATGTACGTATGT 59.492 41.667 0.00 0.00 45.91 2.29
4439 5135 5.689961 GTGTGCATCATCATGTACGTATGTA 59.310 40.000 0.00 0.00 45.91 2.29
4440 5136 6.366061 GTGTGCATCATCATGTACGTATGTAT 59.634 38.462 0.00 0.00 45.91 2.29
4441 5137 6.586082 TGTGCATCATCATGTACGTATGTATC 59.414 38.462 0.00 0.00 45.91 2.24
4442 5138 6.808704 GTGCATCATCATGTACGTATGTATCT 59.191 38.462 0.00 0.00 36.11 1.98
4443 5139 7.329471 GTGCATCATCATGTACGTATGTATCTT 59.671 37.037 0.00 0.00 36.11 2.40
4444 5140 7.329226 TGCATCATCATGTACGTATGTATCTTG 59.671 37.037 0.00 2.25 32.11 3.02
4445 5141 7.329471 GCATCATCATGTACGTATGTATCTTGT 59.671 37.037 0.00 0.00 32.11 3.16
4486 5182 3.437795 CGAGGTCCGGCGTGTACT 61.438 66.667 6.01 0.00 33.91 2.73
4487 5183 2.181021 GAGGTCCGGCGTGTACTG 59.819 66.667 6.01 0.00 0.00 2.74
4488 5184 3.352338 GAGGTCCGGCGTGTACTGG 62.352 68.421 6.01 0.00 37.44 4.00
4489 5185 4.446413 GGTCCGGCGTGTACTGGG 62.446 72.222 6.01 0.00 36.66 4.45
4490 5186 3.688159 GTCCGGCGTGTACTGGGT 61.688 66.667 6.01 0.00 36.66 4.51
4491 5187 3.376078 TCCGGCGTGTACTGGGTC 61.376 66.667 6.01 0.00 36.66 4.46
4492 5188 4.789075 CCGGCGTGTACTGGGTCG 62.789 72.222 6.01 0.00 31.89 4.79
4493 5189 4.789075 CGGCGTGTACTGGGTCGG 62.789 72.222 0.00 0.00 0.00 4.79
4496 5192 4.047059 CGTGTACTGGGTCGGCGT 62.047 66.667 6.85 0.00 0.00 5.68
4497 5193 2.126189 GTGTACTGGGTCGGCGTC 60.126 66.667 6.85 0.00 0.00 5.19
4498 5194 2.598099 TGTACTGGGTCGGCGTCA 60.598 61.111 6.85 3.46 0.00 4.35
4499 5195 1.980232 TGTACTGGGTCGGCGTCAT 60.980 57.895 6.85 0.00 0.00 3.06
4500 5196 1.226888 GTACTGGGTCGGCGTCATC 60.227 63.158 6.85 0.00 0.00 2.92
4501 5197 2.420568 TACTGGGTCGGCGTCATCC 61.421 63.158 6.85 0.00 0.00 3.51
4502 5198 4.530857 CTGGGTCGGCGTCATCCC 62.531 72.222 18.93 18.93 40.26 3.85
4506 5202 4.867599 GTCGGCGTCATCCCCGTC 62.868 72.222 6.85 0.00 44.63 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 2.243144 GGGTGGGTGGGGTTATGGT 61.243 63.158 0.00 0.00 0.00 3.55
138 139 0.255604 TGTGTGCATATGGGAGGGTG 59.744 55.000 4.56 0.00 0.00 4.61
147 148 3.691118 AGTTCAATTCGCTGTGTGCATAT 59.309 39.130 0.00 0.00 43.06 1.78
170 171 2.357154 GCAGGGGCTAAGAATGGAAAGA 60.357 50.000 0.00 0.00 36.96 2.52
202 203 9.691362 GGATTAAACTTTTAAGCAAAGATGTGA 57.309 29.630 10.87 0.00 44.40 3.58
220 224 4.575236 GGAATCGGAGAACAGGGATTAAAC 59.425 45.833 0.00 0.00 43.58 2.01
236 240 2.890808 TCTTCGGAGAATGGAATCGG 57.109 50.000 0.00 0.00 45.90 4.18
238 242 5.412904 ACTTGTTTCTTCGGAGAATGGAATC 59.587 40.000 7.06 0.00 45.90 2.52
241 245 4.351874 ACTTGTTTCTTCGGAGAATGGA 57.648 40.909 7.06 0.00 45.90 3.41
242 246 5.701290 ACTTACTTGTTTCTTCGGAGAATGG 59.299 40.000 7.06 0.90 45.90 3.16
243 247 6.787085 ACTTACTTGTTTCTTCGGAGAATG 57.213 37.500 7.06 1.22 45.90 2.67
244 248 7.488471 CGATACTTACTTGTTTCTTCGGAGAAT 59.512 37.037 7.06 0.00 45.90 2.40
275 282 7.119116 TGCGTTGTTGTTACAGATATTGAATCT 59.881 33.333 0.00 0.00 35.28 2.40
283 290 5.350365 GGATTCTGCGTTGTTGTTACAGATA 59.650 40.000 0.00 0.00 37.24 1.98
284 291 4.154195 GGATTCTGCGTTGTTGTTACAGAT 59.846 41.667 0.00 0.00 37.24 2.90
294 304 2.183478 TGATGTGGATTCTGCGTTGT 57.817 45.000 0.00 0.00 0.00 3.32
336 346 7.060383 TCTGAGAGAGAAATCAGACAAAAGT 57.940 36.000 0.90 0.00 45.31 2.66
368 378 5.751243 TCTTTCTTCGAAGGGAAAACAAG 57.249 39.130 24.37 13.99 33.34 3.16
372 382 7.937394 AGTAATCTTCTTTCTTCGAAGGGAAAA 59.063 33.333 24.37 16.00 38.66 2.29
373 383 7.450903 AGTAATCTTCTTTCTTCGAAGGGAAA 58.549 34.615 24.37 16.84 38.66 3.13
397 411 8.557029 AGTTAACGAAACAGAAGAACCAATAAG 58.443 33.333 0.00 0.00 40.83 1.73
456 832 7.807977 TTTCAAGAACTGAATAGAACAAGCT 57.192 32.000 0.00 0.00 43.64 3.74
508 886 1.351017 TGCAGATTCGACCCCTTCTTT 59.649 47.619 0.00 0.00 0.00 2.52
603 983 4.824537 CCAGCTATACTTCTAGAGACTGCA 59.175 45.833 0.00 0.00 0.00 4.41
622 1002 3.354678 ACGTTGGTGATTGCCAGC 58.645 55.556 0.00 0.00 43.29 4.85
642 1022 7.825681 TGAACACCGAAATAATGATGTGAATT 58.174 30.769 0.00 0.00 0.00 2.17
654 1034 9.834628 GAAAAATCATAGTTGAACACCGAAATA 57.165 29.630 0.00 0.00 34.96 1.40
658 1038 7.504924 AAGAAAAATCATAGTTGAACACCGA 57.495 32.000 0.00 0.00 34.96 4.69
729 1109 2.110578 ACCCCCAAATAGCAAATCAGC 58.889 47.619 0.00 0.00 0.00 4.26
752 1132 8.836413 TGCAAGCCAATAGACAATTATTACTAC 58.164 33.333 0.00 0.00 0.00 2.73
835 1223 6.708502 TGGTCTTGTTCAATCGTTGAGATAAA 59.291 34.615 1.72 0.00 41.38 1.40
877 1265 5.762179 TCTAGCTTGGAAAGGAAATCTGA 57.238 39.130 0.00 0.00 46.35 3.27
879 1267 6.379417 CCAATTCTAGCTTGGAAAGGAAATCT 59.621 38.462 15.28 0.00 46.35 2.40
895 1283 5.308237 AGTGTAAGGGCCTATCCAATTCTAG 59.692 44.000 6.41 0.00 36.21 2.43
980 1371 2.629336 TATTGATGTATGGCCGTGCA 57.371 45.000 18.67 18.67 0.00 4.57
981 1372 3.501828 TCATTATTGATGTATGGCCGTGC 59.498 43.478 8.05 6.97 37.06 5.34
1104 1495 6.721208 ACATGTCCCTTTCAATGTAAGATGTT 59.279 34.615 1.02 0.00 0.00 2.71
1125 1516 3.123804 GGTGATAGAACTACCGCACATG 58.876 50.000 0.00 0.00 0.00 3.21
1153 1544 8.825774 TGACATATATGGCTGACATAAGGTATT 58.174 33.333 19.35 0.00 44.75 1.89
1204 1595 5.506730 TTAGGTGACCCATTGTTGATACA 57.493 39.130 0.00 0.00 0.00 2.29
1218 1609 4.353383 AGACAGTTTCCCTTTAGGTGAC 57.647 45.455 0.00 0.00 36.75 3.67
1248 1639 7.338957 TCACAACCAGATATTGCAATAACATGA 59.661 33.333 22.37 13.77 0.00 3.07
1519 1910 3.507162 TCCCAGAAATTGCTCTGAACA 57.493 42.857 8.45 0.00 44.82 3.18
1591 1982 8.776470 CAATTAAGGCAAATCACAAGTGAAAAT 58.224 29.630 7.02 0.00 43.58 1.82
1597 1988 7.054491 AGAACAATTAAGGCAAATCACAAGT 57.946 32.000 0.00 0.00 0.00 3.16
1698 2090 4.513406 CCAAACAGGGCCCTAATAAGTA 57.487 45.455 28.13 0.00 0.00 2.24
1773 2181 3.191162 TGGTAACTTCATCAAGCATGTGC 59.809 43.478 0.00 0.00 38.54 4.57
1821 2229 8.710749 ATATGCATAATTTGGAGGTGTTGTAT 57.289 30.769 11.13 0.00 0.00 2.29
1832 2240 6.711194 TGCCCATGAAAATATGCATAATTTGG 59.289 34.615 21.56 17.12 0.00 3.28
1869 2277 6.064060 AGTTCATCCACATTGAAAGAACTCA 58.936 36.000 0.00 0.00 38.34 3.41
1882 2290 2.929641 TCACTGCAAAGTTCATCCACA 58.070 42.857 0.00 0.00 0.00 4.17
2058 2466 6.967199 AGTACAATTAGCAGAAAATAAAGCGC 59.033 34.615 0.00 0.00 0.00 5.92
2078 2486 6.671190 CAATTTCATCAGTGAGCAAAGTACA 58.329 36.000 0.00 0.00 35.39 2.90
2081 2489 4.038282 TGCAATTTCATCAGTGAGCAAAGT 59.962 37.500 0.00 0.00 35.39 2.66
2124 2532 9.849166 TCAGAAAAATGTTAATATTTCCGGTTC 57.151 29.630 10.21 10.01 33.35 3.62
2182 2590 7.258022 ACATGGAAAATGTTTAGCCAAAAAC 57.742 32.000 0.00 1.12 39.35 2.43
2188 2700 7.862873 GCTTAGATACATGGAAAATGTTTAGCC 59.137 37.037 0.00 0.00 33.76 3.93
2348 2867 7.364144 GGCCATCAGGAAAATACAGAAGAAATT 60.364 37.037 0.00 0.00 36.89 1.82
2425 2944 4.269183 AGAAACACACAAACCATCAGACA 58.731 39.130 0.00 0.00 0.00 3.41
2454 2973 0.878416 GACATTAAACCAGCGGTGCA 59.122 50.000 9.63 0.00 35.34 4.57
2757 3362 8.529476 ACGTCAAGGAAGTCTTTACAATAGTAT 58.471 33.333 0.00 0.00 30.97 2.12
2758 3363 7.889469 ACGTCAAGGAAGTCTTTACAATAGTA 58.111 34.615 0.00 0.00 30.97 1.82
2759 3364 6.756221 ACGTCAAGGAAGTCTTTACAATAGT 58.244 36.000 0.00 0.00 30.97 2.12
2760 3365 8.752766 TTACGTCAAGGAAGTCTTTACAATAG 57.247 34.615 0.00 0.00 30.97 1.73
2761 3366 9.715121 ATTTACGTCAAGGAAGTCTTTACAATA 57.285 29.630 0.00 0.00 30.97 1.90
2762 3367 8.617290 ATTTACGTCAAGGAAGTCTTTACAAT 57.383 30.769 0.00 0.00 30.97 2.71
2763 3368 8.339714 CAATTTACGTCAAGGAAGTCTTTACAA 58.660 33.333 0.00 0.00 30.97 2.41
2764 3369 7.519328 GCAATTTACGTCAAGGAAGTCTTTACA 60.519 37.037 0.00 0.00 30.97 2.41
2765 3370 6.795593 GCAATTTACGTCAAGGAAGTCTTTAC 59.204 38.462 0.00 0.00 32.41 2.01
2766 3371 6.708949 AGCAATTTACGTCAAGGAAGTCTTTA 59.291 34.615 0.00 0.00 32.41 1.85
2767 3372 5.531287 AGCAATTTACGTCAAGGAAGTCTTT 59.469 36.000 0.00 0.00 32.41 2.52
2768 3373 5.063880 AGCAATTTACGTCAAGGAAGTCTT 58.936 37.500 0.00 0.00 35.79 3.01
2769 3374 4.642429 AGCAATTTACGTCAAGGAAGTCT 58.358 39.130 0.00 0.00 0.00 3.24
2770 3375 5.358298 AAGCAATTTACGTCAAGGAAGTC 57.642 39.130 0.00 0.00 0.00 3.01
2771 3376 5.767816 AAAGCAATTTACGTCAAGGAAGT 57.232 34.783 0.00 0.00 0.00 3.01
2772 3377 8.742554 AATAAAAGCAATTTACGTCAAGGAAG 57.257 30.769 0.00 0.00 36.35 3.46
2773 3378 9.615295 GTAATAAAAGCAATTTACGTCAAGGAA 57.385 29.630 0.00 0.00 36.35 3.36
2774 3379 9.005777 AGTAATAAAAGCAATTTACGTCAAGGA 57.994 29.630 0.00 0.00 36.35 3.36
2775 3380 9.061610 CAGTAATAAAAGCAATTTACGTCAAGG 57.938 33.333 0.00 0.00 36.35 3.61
2776 3381 9.607285 ACAGTAATAAAAGCAATTTACGTCAAG 57.393 29.630 0.00 0.00 36.35 3.02
2777 3382 9.953697 AACAGTAATAAAAGCAATTTACGTCAA 57.046 25.926 0.00 0.00 36.35 3.18
2778 3383 9.388346 CAACAGTAATAAAAGCAATTTACGTCA 57.612 29.630 0.00 0.00 36.35 4.35
2779 3384 9.389570 ACAACAGTAATAAAAGCAATTTACGTC 57.610 29.630 0.00 0.00 36.35 4.34
2801 3406 9.659830 AATTTACGTCAAGACAATCTTTACAAC 57.340 29.630 0.00 0.00 33.78 3.32
2850 3465 9.866936 GTACAACATAAATTTACGTCAAGACAA 57.133 29.630 0.00 0.00 0.00 3.18
2873 3488 7.451566 TCTTATATTAGTTTACGGAGGGGGTAC 59.548 40.741 0.00 0.00 0.00 3.34
2874 3489 7.534852 TCTTATATTAGTTTACGGAGGGGGTA 58.465 38.462 0.00 0.00 0.00 3.69
2875 3490 6.384603 TCTTATATTAGTTTACGGAGGGGGT 58.615 40.000 0.00 0.00 0.00 4.95
2876 3491 6.573876 GCTCTTATATTAGTTTACGGAGGGGG 60.574 46.154 0.00 0.00 0.00 5.40
2877 3492 6.396450 GCTCTTATATTAGTTTACGGAGGGG 58.604 44.000 0.00 0.00 0.00 4.79
2878 3493 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2879 3494 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2880 3495 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2881 3496 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2882 3497 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2896 3511 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
2897 3512 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
2898 3513 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
2899 3514 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
2900 3515 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
2906 3521 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
2907 3522 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
2908 3523 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
2909 3524 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
2910 3525 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
2911 3526 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2912 3527 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
2927 3542 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2928 3543 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2929 3544 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2930 3545 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2931 3546 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2946 3561 9.571823 AGGTAGTACATATATACTCCCTCTGTA 57.428 37.037 0.00 0.00 36.98 2.74
2947 3562 8.330247 CAGGTAGTACATATATACTCCCTCTGT 58.670 40.741 2.42 0.00 38.97 3.41
2948 3563 8.330247 ACAGGTAGTACATATATACTCCCTCTG 58.670 40.741 2.42 6.81 38.97 3.35
2949 3564 8.330247 CACAGGTAGTACATATATACTCCCTCT 58.670 40.741 2.42 0.00 38.97 3.69
2950 3565 7.067251 GCACAGGTAGTACATATATACTCCCTC 59.933 44.444 2.42 0.00 38.97 4.30
2951 3566 6.890814 GCACAGGTAGTACATATATACTCCCT 59.109 42.308 0.00 0.00 41.02 4.20
2952 3567 6.096564 GGCACAGGTAGTACATATATACTCCC 59.903 46.154 0.00 0.00 36.74 4.30
2953 3568 6.096564 GGGCACAGGTAGTACATATATACTCC 59.903 46.154 0.00 0.00 36.74 3.85
2954 3569 6.096564 GGGGCACAGGTAGTACATATATACTC 59.903 46.154 0.00 0.00 36.74 2.59
2955 3570 5.956563 GGGGCACAGGTAGTACATATATACT 59.043 44.000 2.06 0.00 38.89 2.12
2968 3583 2.534396 CCAGGTTGGGGCACAGGTA 61.534 63.158 0.00 0.00 32.67 3.08
2977 3592 4.074970 GCATACATATCTTCCAGGTTGGG 58.925 47.826 0.00 0.00 38.32 4.12
3011 3627 5.689383 TGGAGTACATCTGAAGCAAAAAC 57.311 39.130 0.00 0.00 0.00 2.43
3056 3683 1.277842 ACACACACTTCACTGTGGACA 59.722 47.619 8.11 0.00 45.08 4.02
3066 3693 1.804151 ACACACACACACACACACTTC 59.196 47.619 0.00 0.00 0.00 3.01
3071 3698 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3073 3700 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3075 3702 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3077 3704 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3079 3706 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3081 3708 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3083 3710 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3084 3711 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3085 3712 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3086 3713 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3087 3714 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3088 3715 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3089 3716 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3090 3717 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3091 3718 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3092 3719 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3093 3720 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3094 3721 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3095 3722 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3096 3723 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3097 3724 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
3098 3725 1.872468 GCACACACACACACACACA 59.128 52.632 0.00 0.00 0.00 3.72
3099 3726 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
3100 3727 1.357991 CTCGCACACACACACACACA 61.358 55.000 0.00 0.00 0.00 3.72
3101 3728 1.348250 CTCGCACACACACACACAC 59.652 57.895 0.00 0.00 0.00 3.82
3258 3889 1.129437 GATGAAAGTCTGCACGCCTTC 59.871 52.381 0.00 0.00 0.00 3.46
3274 3906 9.886132 GAGAACCCAAGTTACTAAAATAGATGA 57.114 33.333 0.00 0.00 35.94 2.92
3508 4144 2.514458 TTCCTTTTCTGGATGGCTCC 57.486 50.000 0.00 0.00 42.45 4.70
3518 4154 4.326826 TGATCTGCGTTCATTCCTTTTCT 58.673 39.130 0.00 0.00 0.00 2.52
3548 4187 2.887152 AGCTCCTTTTGTTTGCGATTCT 59.113 40.909 0.00 0.00 0.00 2.40
3577 4216 1.403679 CTGAGCTACTCTTGTCTCCGG 59.596 57.143 0.00 0.00 0.00 5.14
3579 4218 4.219725 ACTTTCTGAGCTACTCTTGTCTCC 59.780 45.833 0.00 0.00 0.00 3.71
3704 4343 9.285770 GTTTTGTTATGAAGAAAGAAACGTTCT 57.714 29.630 0.00 0.00 43.15 3.01
3724 4363 8.677148 AAACTACACTGTGATCATAGTTTTGT 57.323 30.769 21.22 18.31 41.16 2.83
3735 4374 7.497579 TGAAACACACATAAACTACACTGTGAT 59.502 33.333 15.86 1.48 41.11 3.06
3741 4380 7.112528 TCGATGAAACACACATAAACTACAC 57.887 36.000 0.00 0.00 0.00 2.90
3743 4382 7.148474 ACCATCGATGAAACACACATAAACTAC 60.148 37.037 26.86 0.00 0.00 2.73
3754 4393 0.096976 CGCCACCATCGATGAAACAC 59.903 55.000 26.86 10.57 0.00 3.32
3761 4400 4.891727 GTCGGCGCCACCATCGAT 62.892 66.667 28.98 0.00 39.03 3.59
3769 4408 2.203001 CCATGTATGTCGGCGCCA 60.203 61.111 28.98 11.20 0.00 5.69
3770 4409 1.817941 AACCATGTATGTCGGCGCC 60.818 57.895 19.07 19.07 0.00 6.53
3777 4416 2.603075 AACAGGCCAACCATGTATGT 57.397 45.000 5.01 0.00 39.06 2.29
3787 4426 5.128499 TCAAATCAAAGAGAAAACAGGCCAA 59.872 36.000 5.01 0.00 0.00 4.52
3799 4438 4.458295 AGTGAGCACCATCAAATCAAAGAG 59.542 41.667 0.00 0.00 0.00 2.85
3800 4439 4.216902 CAGTGAGCACCATCAAATCAAAGA 59.783 41.667 0.00 0.00 0.00 2.52
3854 4498 2.642154 TTGCCGGTTTTACAAGGAGA 57.358 45.000 1.90 0.00 0.00 3.71
3860 4504 7.429633 CAATATTATCCATTGCCGGTTTTACA 58.570 34.615 1.90 0.00 0.00 2.41
3861 4505 6.866248 CCAATATTATCCATTGCCGGTTTTAC 59.134 38.462 1.90 0.00 33.00 2.01
3862 4506 6.517529 GCCAATATTATCCATTGCCGGTTTTA 60.518 38.462 1.90 0.00 33.00 1.52
3869 4527 7.037438 CAGTAATGCCAATATTATCCATTGCC 58.963 38.462 13.44 7.40 33.00 4.52
3871 4529 8.795513 TGACAGTAATGCCAATATTATCCATTG 58.204 33.333 13.44 0.00 33.93 2.82
3872 4530 8.796475 GTGACAGTAATGCCAATATTATCCATT 58.204 33.333 10.41 10.41 0.00 3.16
3886 4544 9.823647 AGCCTATATATATTGTGACAGTAATGC 57.176 33.333 0.00 0.00 0.00 3.56
3892 4550 9.473640 CATAGCAGCCTATATATATTGTGACAG 57.526 37.037 0.00 0.00 33.01 3.51
3916 4577 2.025981 TCTTGTGTTGCTCATAGGCCAT 60.026 45.455 5.01 0.00 0.00 4.40
3917 4578 1.350684 TCTTGTGTTGCTCATAGGCCA 59.649 47.619 5.01 0.00 0.00 5.36
3918 4579 1.740025 GTCTTGTGTTGCTCATAGGCC 59.260 52.381 0.00 0.00 0.00 5.19
3919 4580 2.426522 TGTCTTGTGTTGCTCATAGGC 58.573 47.619 0.00 0.00 0.00 3.93
3920 4581 3.814842 TGTTGTCTTGTGTTGCTCATAGG 59.185 43.478 0.00 0.00 0.00 2.57
3921 4582 5.179929 TCATGTTGTCTTGTGTTGCTCATAG 59.820 40.000 0.00 0.00 0.00 2.23
3922 4583 5.062528 TCATGTTGTCTTGTGTTGCTCATA 58.937 37.500 0.00 0.00 0.00 2.15
3923 4584 3.884693 TCATGTTGTCTTGTGTTGCTCAT 59.115 39.130 0.00 0.00 0.00 2.90
3924 4585 3.277715 TCATGTTGTCTTGTGTTGCTCA 58.722 40.909 0.00 0.00 0.00 4.26
3925 4586 3.851105 GCTCATGTTGTCTTGTGTTGCTC 60.851 47.826 0.00 0.00 0.00 4.26
3926 4587 2.033801 GCTCATGTTGTCTTGTGTTGCT 59.966 45.455 0.00 0.00 0.00 3.91
3927 4588 2.033801 AGCTCATGTTGTCTTGTGTTGC 59.966 45.455 0.00 0.00 0.00 4.17
3928 4589 3.313249 TGAGCTCATGTTGTCTTGTGTTG 59.687 43.478 13.74 0.00 0.00 3.33
3929 4590 3.313526 GTGAGCTCATGTTGTCTTGTGTT 59.686 43.478 21.47 0.00 0.00 3.32
3930 4591 2.874701 GTGAGCTCATGTTGTCTTGTGT 59.125 45.455 21.47 0.00 0.00 3.72
3931 4592 2.096565 CGTGAGCTCATGTTGTCTTGTG 60.097 50.000 25.09 0.00 0.00 3.33
3932 4593 2.138320 CGTGAGCTCATGTTGTCTTGT 58.862 47.619 25.09 0.00 0.00 3.16
3933 4594 1.462283 CCGTGAGCTCATGTTGTCTTG 59.538 52.381 29.44 12.32 0.00 3.02
3934 4595 1.800805 CCGTGAGCTCATGTTGTCTT 58.199 50.000 29.44 0.00 0.00 3.01
3935 4596 0.671781 GCCGTGAGCTCATGTTGTCT 60.672 55.000 29.44 0.00 38.99 3.41
3936 4597 1.639298 GGCCGTGAGCTCATGTTGTC 61.639 60.000 29.44 16.22 43.05 3.18
3937 4598 1.672356 GGCCGTGAGCTCATGTTGT 60.672 57.895 29.44 0.00 43.05 3.32
3938 4599 1.376424 AGGCCGTGAGCTCATGTTG 60.376 57.895 29.44 18.58 43.05 3.33
3939 4600 1.376424 CAGGCCGTGAGCTCATGTT 60.376 57.895 29.44 15.04 43.05 2.71
3940 4601 2.267006 CAGGCCGTGAGCTCATGT 59.733 61.111 29.44 12.66 43.05 3.21
3941 4602 1.812922 GACAGGCCGTGAGCTCATG 60.813 63.158 26.20 26.20 43.05 3.07
3942 4603 1.986757 AGACAGGCCGTGAGCTCAT 60.987 57.895 21.47 0.62 43.05 2.90
3943 4604 2.601666 AGACAGGCCGTGAGCTCA 60.602 61.111 13.74 13.74 43.05 4.26
3944 4605 2.125753 CAGACAGGCCGTGAGCTC 60.126 66.667 6.82 6.82 43.05 4.09
3945 4606 3.699894 CCAGACAGGCCGTGAGCT 61.700 66.667 4.94 0.00 43.05 4.09
3965 4630 4.077822 TCCATGTCAAATGTACACATGCA 58.922 39.130 14.76 11.31 44.09 3.96
3971 4636 2.486203 GCCGTTCCATGTCAAATGTACA 59.514 45.455 0.00 0.00 0.00 2.90
3974 4639 1.541147 CAGCCGTTCCATGTCAAATGT 59.459 47.619 0.00 0.00 0.00 2.71
3975 4640 1.733389 GCAGCCGTTCCATGTCAAATG 60.733 52.381 0.00 0.00 0.00 2.32
3980 4646 1.915614 CTGTGCAGCCGTTCCATGTC 61.916 60.000 0.00 0.00 0.00 3.06
4016 4683 0.957395 CTTGTGCCGGATCAAGCAGT 60.957 55.000 20.32 0.00 40.28 4.40
4019 4686 1.675641 ACCTTGTGCCGGATCAAGC 60.676 57.895 24.21 3.26 39.47 4.01
4088 4757 1.272807 ATGCCAAAGCTTGCCTCATT 58.727 45.000 0.00 0.00 40.80 2.57
4227 4923 1.668101 CTCTACTCCACTGGGACGGC 61.668 65.000 0.00 0.00 38.64 5.68
4228 4924 1.038130 CCTCTACTCCACTGGGACGG 61.038 65.000 0.00 0.00 38.64 4.79
4229 4925 0.323542 ACCTCTACTCCACTGGGACG 60.324 60.000 0.00 0.00 38.64 4.79
4230 4926 1.550976 CAACCTCTACTCCACTGGGAC 59.449 57.143 0.00 0.00 38.64 4.46
4231 4927 1.938585 CAACCTCTACTCCACTGGGA 58.061 55.000 0.00 0.00 42.29 4.37
4232 4928 0.250513 GCAACCTCTACTCCACTGGG 59.749 60.000 0.00 0.00 0.00 4.45
4273 4969 6.370442 TGACACTGTTTTTCTTCTTCTTTCGA 59.630 34.615 0.00 0.00 0.00 3.71
4275 4971 8.639428 GTTTGACACTGTTTTTCTTCTTCTTTC 58.361 33.333 0.00 0.00 0.00 2.62
4276 4972 8.141268 TGTTTGACACTGTTTTTCTTCTTCTTT 58.859 29.630 0.00 0.00 0.00 2.52
4279 4975 7.265693 GTGTTTGACACTGTTTTTCTTCTTC 57.734 36.000 4.06 0.00 45.27 2.87
4307 5003 1.021390 AAGATACGCACAGGCACAGC 61.021 55.000 0.00 0.00 41.24 4.40
4308 5004 1.442769 AAAGATACGCACAGGCACAG 58.557 50.000 0.00 0.00 41.24 3.66
4309 5005 1.535028 CAAAAGATACGCACAGGCACA 59.465 47.619 0.00 0.00 41.24 4.57
4310 5006 1.804151 TCAAAAGATACGCACAGGCAC 59.196 47.619 0.00 0.00 41.24 5.01
4311 5007 1.804151 GTCAAAAGATACGCACAGGCA 59.196 47.619 0.00 0.00 41.24 4.75
4312 5008 1.130561 GGTCAAAAGATACGCACAGGC 59.869 52.381 0.00 0.00 0.00 4.85
4313 5009 1.737793 GGGTCAAAAGATACGCACAGG 59.262 52.381 0.00 0.00 0.00 4.00
4314 5010 1.737793 GGGGTCAAAAGATACGCACAG 59.262 52.381 0.00 0.00 0.00 3.66
4315 5011 1.816074 GGGGTCAAAAGATACGCACA 58.184 50.000 0.00 0.00 0.00 4.57
4316 5012 0.725117 CGGGGTCAAAAGATACGCAC 59.275 55.000 0.00 0.00 0.00 5.34
4317 5013 1.022451 GCGGGGTCAAAAGATACGCA 61.022 55.000 0.00 0.00 44.32 5.24
4318 5014 1.712018 GGCGGGGTCAAAAGATACGC 61.712 60.000 0.00 0.00 44.20 4.42
4319 5015 1.093496 GGGCGGGGTCAAAAGATACG 61.093 60.000 0.00 0.00 0.00 3.06
4320 5016 0.255033 AGGGCGGGGTCAAAAGATAC 59.745 55.000 0.00 0.00 0.00 2.24
4321 5017 0.254747 CAGGGCGGGGTCAAAAGATA 59.745 55.000 0.00 0.00 0.00 1.98
4322 5018 1.000896 CAGGGCGGGGTCAAAAGAT 60.001 57.895 0.00 0.00 0.00 2.40
4323 5019 2.434331 CAGGGCGGGGTCAAAAGA 59.566 61.111 0.00 0.00 0.00 2.52
4324 5020 2.499303 ATCCAGGGCGGGGTCAAAAG 62.499 60.000 0.00 0.00 34.36 2.27
4325 5021 2.493273 GATCCAGGGCGGGGTCAAAA 62.493 60.000 2.51 0.00 38.01 2.44
4327 5023 3.407967 GATCCAGGGCGGGGTCAA 61.408 66.667 2.51 0.00 38.01 3.18
4328 5024 3.943137 AAGATCCAGGGCGGGGTCA 62.943 63.158 9.42 0.00 40.73 4.02
4329 5025 2.211468 AAAAGATCCAGGGCGGGGTC 62.211 60.000 0.00 0.00 38.41 4.46
4331 5027 1.453928 GAAAAGATCCAGGGCGGGG 60.454 63.158 0.00 0.00 34.36 5.73
4332 5028 4.242602 GAAAAGATCCAGGGCGGG 57.757 61.111 0.00 0.00 34.36 6.13
4342 5038 8.193438 CACTGTTTTTCTTCTTCTGGAAAAGAT 58.807 33.333 0.00 0.00 40.78 2.40
4343 5039 7.176690 ACACTGTTTTTCTTCTTCTGGAAAAGA 59.823 33.333 0.00 0.00 40.78 2.52
4344 5040 7.315890 ACACTGTTTTTCTTCTTCTGGAAAAG 58.684 34.615 0.00 0.00 40.78 2.27
4345 5041 7.040062 TGACACTGTTTTTCTTCTTCTGGAAAA 60.040 33.333 0.00 0.00 38.93 2.29
4346 5042 6.432783 TGACACTGTTTTTCTTCTTCTGGAAA 59.567 34.615 0.00 0.00 33.07 3.13
4347 5043 5.943416 TGACACTGTTTTTCTTCTTCTGGAA 59.057 36.000 0.00 0.00 0.00 3.53
4348 5044 5.496556 TGACACTGTTTTTCTTCTTCTGGA 58.503 37.500 0.00 0.00 0.00 3.86
4349 5045 5.818136 TGACACTGTTTTTCTTCTTCTGG 57.182 39.130 0.00 0.00 0.00 3.86
4350 5046 7.061094 GTGTTTGACACTGTTTTTCTTCTTCTG 59.939 37.037 4.06 0.00 45.27 3.02
4351 5047 7.084486 GTGTTTGACACTGTTTTTCTTCTTCT 58.916 34.615 4.06 0.00 45.27 2.85
4375 5071 1.694150 ACACACAGGACACAGCTATGT 59.306 47.619 0.00 0.00 41.57 2.29
4376 5072 2.462456 ACACACAGGACACAGCTATG 57.538 50.000 0.00 0.00 0.00 2.23
4377 5073 4.026744 AGATACACACAGGACACAGCTAT 58.973 43.478 0.00 0.00 0.00 2.97
4378 5074 3.431415 AGATACACACAGGACACAGCTA 58.569 45.455 0.00 0.00 0.00 3.32
4379 5075 2.251818 AGATACACACAGGACACAGCT 58.748 47.619 0.00 0.00 0.00 4.24
4380 5076 2.751166 AGATACACACAGGACACAGC 57.249 50.000 0.00 0.00 0.00 4.40
4381 5077 5.050091 GTCAAAAGATACACACAGGACACAG 60.050 44.000 0.00 0.00 0.00 3.66
4382 5078 4.814234 GTCAAAAGATACACACAGGACACA 59.186 41.667 0.00 0.00 0.00 3.72
4383 5079 4.084537 CGTCAAAAGATACACACAGGACAC 60.085 45.833 0.00 0.00 0.00 3.67
4384 5080 4.055360 CGTCAAAAGATACACACAGGACA 58.945 43.478 0.00 0.00 0.00 4.02
4385 5081 4.304110 TCGTCAAAAGATACACACAGGAC 58.696 43.478 0.00 0.00 0.00 3.85
4386 5082 4.594123 TCGTCAAAAGATACACACAGGA 57.406 40.909 0.00 0.00 0.00 3.86
4387 5083 4.750098 AGTTCGTCAAAAGATACACACAGG 59.250 41.667 0.00 0.00 0.00 4.00
4388 5084 5.907197 AGTTCGTCAAAAGATACACACAG 57.093 39.130 0.00 0.00 0.00 3.66
4389 5085 5.404366 GCTAGTTCGTCAAAAGATACACACA 59.596 40.000 0.00 0.00 0.00 3.72
4390 5086 5.634020 AGCTAGTTCGTCAAAAGATACACAC 59.366 40.000 0.00 0.00 0.00 3.82
4391 5087 5.633601 CAGCTAGTTCGTCAAAAGATACACA 59.366 40.000 0.00 0.00 0.00 3.72
4392 5088 5.634020 ACAGCTAGTTCGTCAAAAGATACAC 59.366 40.000 0.00 0.00 0.00 2.90
4393 5089 5.633601 CACAGCTAGTTCGTCAAAAGATACA 59.366 40.000 0.00 0.00 0.00 2.29
4394 5090 5.634020 ACACAGCTAGTTCGTCAAAAGATAC 59.366 40.000 0.00 0.00 0.00 2.24
4395 5091 5.633601 CACACAGCTAGTTCGTCAAAAGATA 59.366 40.000 0.00 0.00 0.00 1.98
4396 5092 4.449068 CACACAGCTAGTTCGTCAAAAGAT 59.551 41.667 0.00 0.00 0.00 2.40
4397 5093 3.802139 CACACAGCTAGTTCGTCAAAAGA 59.198 43.478 0.00 0.00 0.00 2.52
4398 5094 3.604772 GCACACAGCTAGTTCGTCAAAAG 60.605 47.826 0.00 0.00 41.15 2.27
4399 5095 2.286833 GCACACAGCTAGTTCGTCAAAA 59.713 45.455 0.00 0.00 41.15 2.44
4400 5096 1.864711 GCACACAGCTAGTTCGTCAAA 59.135 47.619 0.00 0.00 41.15 2.69
4401 5097 1.202475 TGCACACAGCTAGTTCGTCAA 60.202 47.619 0.00 0.00 45.94 3.18
4402 5098 0.387565 TGCACACAGCTAGTTCGTCA 59.612 50.000 0.00 0.00 45.94 4.35
4403 5099 1.656095 GATGCACACAGCTAGTTCGTC 59.344 52.381 0.00 0.00 45.94 4.20
4404 5100 1.000843 TGATGCACACAGCTAGTTCGT 59.999 47.619 0.00 0.00 45.94 3.85
4405 5101 1.713597 TGATGCACACAGCTAGTTCG 58.286 50.000 0.00 0.00 45.94 3.95
4406 5102 3.264947 TGATGATGCACACAGCTAGTTC 58.735 45.455 11.23 0.46 45.94 3.01
4407 5103 3.339253 TGATGATGCACACAGCTAGTT 57.661 42.857 11.23 0.00 45.94 2.24
4408 5104 3.203716 CATGATGATGCACACAGCTAGT 58.796 45.455 11.23 0.00 45.94 2.57
4409 5105 3.203716 ACATGATGATGCACACAGCTAG 58.796 45.455 0.00 6.97 45.94 3.42
4410 5106 3.271055 ACATGATGATGCACACAGCTA 57.729 42.857 0.00 0.87 45.94 3.32
4411 5107 2.124277 ACATGATGATGCACACAGCT 57.876 45.000 0.00 0.00 45.94 4.24
4412 5108 2.286008 CGTACATGATGATGCACACAGC 60.286 50.000 0.00 0.00 45.96 4.40
4413 5109 2.931969 ACGTACATGATGATGCACACAG 59.068 45.455 0.00 0.00 32.14 3.66
4414 5110 2.971307 ACGTACATGATGATGCACACA 58.029 42.857 0.00 0.00 32.14 3.72
4415 5111 4.507756 ACATACGTACATGATGATGCACAC 59.492 41.667 0.00 0.00 32.14 3.82
4416 5112 4.692228 ACATACGTACATGATGATGCACA 58.308 39.130 0.00 0.00 32.14 4.57
4417 5113 6.808704 AGATACATACGTACATGATGATGCAC 59.191 38.462 0.00 0.00 32.14 4.57
4418 5114 6.924111 AGATACATACGTACATGATGATGCA 58.076 36.000 0.00 0.00 32.14 3.96
4419 5115 7.329471 ACAAGATACATACGTACATGATGATGC 59.671 37.037 0.00 0.00 32.14 3.91
4420 5116 8.642020 CACAAGATACATACGTACATGATGATG 58.358 37.037 0.00 0.00 35.49 3.07
4421 5117 7.329471 GCACAAGATACATACGTACATGATGAT 59.671 37.037 0.00 0.00 0.00 2.45
4422 5118 6.640907 GCACAAGATACATACGTACATGATGA 59.359 38.462 0.00 0.00 0.00 2.92
4423 5119 6.642540 AGCACAAGATACATACGTACATGATG 59.357 38.462 0.00 0.00 0.00 3.07
4424 5120 6.749139 AGCACAAGATACATACGTACATGAT 58.251 36.000 0.00 0.00 0.00 2.45
4425 5121 6.144078 AGCACAAGATACATACGTACATGA 57.856 37.500 0.00 0.00 0.00 3.07
4426 5122 6.828502 AAGCACAAGATACATACGTACATG 57.171 37.500 0.00 0.00 0.00 3.21
4427 5123 7.713750 AGTAAGCACAAGATACATACGTACAT 58.286 34.615 0.00 0.00 0.00 2.29
4428 5124 7.066645 AGAGTAAGCACAAGATACATACGTACA 59.933 37.037 0.00 0.00 0.00 2.90
4429 5125 7.416022 AGAGTAAGCACAAGATACATACGTAC 58.584 38.462 0.00 0.00 0.00 3.67
4430 5126 7.563888 AGAGTAAGCACAAGATACATACGTA 57.436 36.000 0.00 0.00 0.00 3.57
4431 5127 6.452494 AGAGTAAGCACAAGATACATACGT 57.548 37.500 0.00 0.00 0.00 3.57
4432 5128 6.752351 ACAAGAGTAAGCACAAGATACATACG 59.248 38.462 0.00 0.00 0.00 3.06
4433 5129 7.010552 CCACAAGAGTAAGCACAAGATACATAC 59.989 40.741 0.00 0.00 0.00 2.39
4434 5130 7.041721 CCACAAGAGTAAGCACAAGATACATA 58.958 38.462 0.00 0.00 0.00 2.29
4435 5131 5.877012 CCACAAGAGTAAGCACAAGATACAT 59.123 40.000 0.00 0.00 0.00 2.29
4436 5132 5.237815 CCACAAGAGTAAGCACAAGATACA 58.762 41.667 0.00 0.00 0.00 2.29
4437 5133 4.093556 GCCACAAGAGTAAGCACAAGATAC 59.906 45.833 0.00 0.00 0.00 2.24
4438 5134 4.253685 GCCACAAGAGTAAGCACAAGATA 58.746 43.478 0.00 0.00 0.00 1.98
4439 5135 3.077359 GCCACAAGAGTAAGCACAAGAT 58.923 45.455 0.00 0.00 0.00 2.40
4440 5136 2.494059 GCCACAAGAGTAAGCACAAGA 58.506 47.619 0.00 0.00 0.00 3.02
4441 5137 1.195448 CGCCACAAGAGTAAGCACAAG 59.805 52.381 0.00 0.00 0.00 3.16
4442 5138 1.202592 TCGCCACAAGAGTAAGCACAA 60.203 47.619 0.00 0.00 0.00 3.33
4443 5139 0.391228 TCGCCACAAGAGTAAGCACA 59.609 50.000 0.00 0.00 0.00 4.57
4444 5140 0.790814 GTCGCCACAAGAGTAAGCAC 59.209 55.000 0.00 0.00 0.00 4.40
4445 5141 0.666274 CGTCGCCACAAGAGTAAGCA 60.666 55.000 0.00 0.00 0.00 3.91
4482 5178 1.226888 GATGACGCCGACCCAGTAC 60.227 63.158 0.00 0.00 0.00 2.73
4483 5179 2.420568 GGATGACGCCGACCCAGTA 61.421 63.158 0.00 0.00 0.00 2.74
4484 5180 3.771160 GGATGACGCCGACCCAGT 61.771 66.667 0.00 0.00 0.00 4.00
4485 5181 4.530857 GGGATGACGCCGACCCAG 62.531 72.222 0.00 0.00 41.72 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.