Multiple sequence alignment - TraesCS6D01G368500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G368500 chr6D 100.000 2638 0 0 1 2638 455633444 455636081 0.000 4872.0
1 TraesCS6D01G368500 chr6B 89.364 1053 69 23 646 1662 692819600 692820645 0.000 1284.0
2 TraesCS6D01G368500 chr6B 94.729 645 34 0 1 645 641301497 641300853 0.000 1003.0
3 TraesCS6D01G368500 chr5D 91.551 793 64 1 1849 2638 423232012 423231220 0.000 1090.0
4 TraesCS6D01G368500 chr2B 91.551 793 64 1 1849 2638 593662299 593663091 0.000 1090.0
5 TraesCS6D01G368500 chr2B 91.519 790 61 4 1850 2635 452910179 452910966 0.000 1083.0
6 TraesCS6D01G368500 chr7B 91.572 795 58 5 1850 2638 498599768 498598977 0.000 1088.0
7 TraesCS6D01G368500 chr7B 91.047 793 67 2 1850 2638 632802984 632802192 0.000 1068.0
8 TraesCS6D01G368500 chr7B 100.000 29 0 0 665 693 163014051 163014023 0.001 54.7
9 TraesCS6D01G368500 chr3B 91.299 793 65 2 1850 2638 824305052 824304260 0.000 1079.0
10 TraesCS6D01G368500 chr3B 91.184 794 66 2 1849 2638 533445419 533444626 0.000 1075.0
11 TraesCS6D01G368500 chr3B 94.720 644 34 0 1 644 2342896 2342253 0.000 1002.0
12 TraesCS6D01G368500 chr2D 91.150 791 67 2 1850 2638 13933712 13932923 0.000 1070.0
13 TraesCS6D01G368500 chr1B 91.058 794 66 3 1846 2635 94009130 94009922 0.000 1068.0
14 TraesCS6D01G368500 chr1B 95.039 645 32 0 1 645 6249708 6250352 0.000 1014.0
15 TraesCS6D01G368500 chr4A 94.931 651 30 3 1 649 728114936 728114287 0.000 1016.0
16 TraesCS6D01G368500 chr1D 95.046 646 32 0 1 646 486402183 486402828 0.000 1016.0
17 TraesCS6D01G368500 chr1D 94.737 646 33 1 1 645 461900483 461901128 0.000 1003.0
18 TraesCS6D01G368500 chr1A 95.039 645 32 0 1 645 590349508 590350152 0.000 1014.0
19 TraesCS6D01G368500 chr7D 94.876 644 33 0 1 644 578032095 578031452 0.000 1007.0
20 TraesCS6D01G368500 chr7D 96.774 31 1 0 665 695 442222422 442222452 0.005 52.8
21 TraesCS6D01G368500 chr4B 94.582 646 35 0 1 646 649681669 649682314 0.000 1000.0
22 TraesCS6D01G368500 chr6A 87.045 880 44 29 703 1518 602502236 602503109 0.000 929.0
23 TraesCS6D01G368500 chr6A 85.319 940 67 28 777 1680 602516837 602517741 0.000 905.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G368500 chr6D 455633444 455636081 2637 False 4872 4872 100.000 1 2638 1 chr6D.!!$F1 2637
1 TraesCS6D01G368500 chr6B 692819600 692820645 1045 False 1284 1284 89.364 646 1662 1 chr6B.!!$F1 1016
2 TraesCS6D01G368500 chr6B 641300853 641301497 644 True 1003 1003 94.729 1 645 1 chr6B.!!$R1 644
3 TraesCS6D01G368500 chr5D 423231220 423232012 792 True 1090 1090 91.551 1849 2638 1 chr5D.!!$R1 789
4 TraesCS6D01G368500 chr2B 593662299 593663091 792 False 1090 1090 91.551 1849 2638 1 chr2B.!!$F2 789
5 TraesCS6D01G368500 chr2B 452910179 452910966 787 False 1083 1083 91.519 1850 2635 1 chr2B.!!$F1 785
6 TraesCS6D01G368500 chr7B 498598977 498599768 791 True 1088 1088 91.572 1850 2638 1 chr7B.!!$R2 788
7 TraesCS6D01G368500 chr7B 632802192 632802984 792 True 1068 1068 91.047 1850 2638 1 chr7B.!!$R3 788
8 TraesCS6D01G368500 chr3B 824304260 824305052 792 True 1079 1079 91.299 1850 2638 1 chr3B.!!$R3 788
9 TraesCS6D01G368500 chr3B 533444626 533445419 793 True 1075 1075 91.184 1849 2638 1 chr3B.!!$R2 789
10 TraesCS6D01G368500 chr3B 2342253 2342896 643 True 1002 1002 94.720 1 644 1 chr3B.!!$R1 643
11 TraesCS6D01G368500 chr2D 13932923 13933712 789 True 1070 1070 91.150 1850 2638 1 chr2D.!!$R1 788
12 TraesCS6D01G368500 chr1B 94009130 94009922 792 False 1068 1068 91.058 1846 2635 1 chr1B.!!$F2 789
13 TraesCS6D01G368500 chr1B 6249708 6250352 644 False 1014 1014 95.039 1 645 1 chr1B.!!$F1 644
14 TraesCS6D01G368500 chr4A 728114287 728114936 649 True 1016 1016 94.931 1 649 1 chr4A.!!$R1 648
15 TraesCS6D01G368500 chr1D 486402183 486402828 645 False 1016 1016 95.046 1 646 1 chr1D.!!$F2 645
16 TraesCS6D01G368500 chr1D 461900483 461901128 645 False 1003 1003 94.737 1 645 1 chr1D.!!$F1 644
17 TraesCS6D01G368500 chr1A 590349508 590350152 644 False 1014 1014 95.039 1 645 1 chr1A.!!$F1 644
18 TraesCS6D01G368500 chr7D 578031452 578032095 643 True 1007 1007 94.876 1 644 1 chr7D.!!$R1 643
19 TraesCS6D01G368500 chr4B 649681669 649682314 645 False 1000 1000 94.582 1 646 1 chr4B.!!$F1 645
20 TraesCS6D01G368500 chr6A 602502236 602503109 873 False 929 929 87.045 703 1518 1 chr6A.!!$F1 815
21 TraesCS6D01G368500 chr6A 602516837 602517741 904 False 905 905 85.319 777 1680 1 chr6A.!!$F2 903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 317 0.664166 TCGGCGTTTTAGTCGTGGTC 60.664 55.0 6.85 0.0 40.52 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1826 1908 0.045778 TAGGGGAAGAAAGGGGGAGG 59.954 60.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 147 0.963355 GACCTGTGTCCTCGAGCTCT 60.963 60.000 12.85 0.00 35.34 4.09
274 275 3.515316 CTGGGCTCGTGGTTCGTGT 62.515 63.158 0.00 0.00 40.80 4.49
287 288 3.386402 TGGTTCGTGTATGGCAGATATGA 59.614 43.478 0.00 0.00 0.00 2.15
316 317 0.664166 TCGGCGTTTTAGTCGTGGTC 60.664 55.000 6.85 0.00 40.52 4.02
317 318 0.940519 CGGCGTTTTAGTCGTGGTCA 60.941 55.000 0.00 0.00 34.13 4.02
342 343 2.625790 GCTAGATCTGGAGTTCGATGGT 59.374 50.000 10.75 0.00 0.00 3.55
351 352 1.183030 AGTTCGATGGTGTGTCCGGA 61.183 55.000 0.00 0.00 39.52 5.14
355 356 1.741770 GATGGTGTGTCCGGAGTGC 60.742 63.158 3.06 0.00 39.52 4.40
372 373 1.377202 GCTGCCCCGTTCTGATTCA 60.377 57.895 0.00 0.00 0.00 2.57
552 554 4.081972 GGTGTCAAGCTCAGAGATGTTCTA 60.082 45.833 0.00 0.00 33.83 2.10
675 677 8.534333 TCGCATTGGAATGTAAGACTTATATC 57.466 34.615 5.07 1.78 38.65 1.63
691 693 8.507761 AGACTTATATCTAGAAACAGAGGGAGT 58.492 37.037 0.00 0.00 0.00 3.85
693 695 9.577222 ACTTATATCTAGAAACAGAGGGAGTAC 57.423 37.037 0.00 0.00 0.00 2.73
694 696 9.802039 CTTATATCTAGAAACAGAGGGAGTACT 57.198 37.037 0.00 0.00 0.00 2.73
701 703 5.601313 AGAAACAGAGGGAGTACTTGTTACA 59.399 40.000 9.67 0.00 32.41 2.41
775 778 7.068593 CAGAAAGCTATACCATTTTCCATTCCA 59.931 37.037 0.00 0.00 31.56 3.53
852 861 4.964593 TGACATATACAGCAGTGATGCAT 58.035 39.130 8.62 0.00 37.25 3.96
877 886 5.183713 ACGGCAAATCTTGATTCAGAATTCA 59.816 36.000 8.44 0.00 0.00 2.57
878 887 6.127535 ACGGCAAATCTTGATTCAGAATTCAT 60.128 34.615 8.44 0.00 0.00 2.57
1015 1036 5.514559 CACAATCACTACTCATCAAGACGAG 59.485 44.000 0.00 0.00 35.30 4.18
1092 1133 0.176910 CCTTTCTTCCTCCTCCTCGC 59.823 60.000 0.00 0.00 0.00 5.03
1154 1196 2.349886 GACGACTCTCCACGTACGTATT 59.650 50.000 22.34 0.00 42.74 1.89
1158 1200 3.201290 ACTCTCCACGTACGTATTCGAT 58.799 45.455 22.34 2.98 40.62 3.59
1185 1227 2.635443 CGCCGTCCATGCCCTTTTT 61.635 57.895 0.00 0.00 0.00 1.94
1211 1273 4.210832 TCGCGTACTTGACATCTAGATG 57.789 45.455 27.63 27.63 44.15 2.90
1464 1534 5.243954 AGGCTCTGATTTTAAGTTTCCCAAC 59.756 40.000 0.00 0.00 0.00 3.77
1482 1552 2.332063 ACTTATCTTGTGGCCGGATG 57.668 50.000 5.05 0.00 0.00 3.51
1535 1612 3.415212 TCTTGGTTTGATCTGAGCAAGG 58.585 45.455 26.00 15.52 46.14 3.61
1552 1633 3.670627 GCAAGGAATGTTTGTGTCGATCC 60.671 47.826 0.00 0.00 0.00 3.36
1593 1674 7.971168 CCCGTGTCAATAAACAATTAAGCATAA 59.029 33.333 0.00 0.00 0.00 1.90
1616 1697 5.988310 ATGATTCCTGTTGCATTTTCTGA 57.012 34.783 0.00 0.00 0.00 3.27
1617 1698 5.787953 TGATTCCTGTTGCATTTTCTGAA 57.212 34.783 0.00 0.00 0.00 3.02
1619 1700 5.535783 TGATTCCTGTTGCATTTTCTGAAGA 59.464 36.000 0.00 0.00 0.00 2.87
1649 1730 9.778741 AGATGTACTATGTTTCAGTTTGAAAGA 57.221 29.630 4.59 4.39 45.83 2.52
1651 1732 7.861630 TGTACTATGTTTCAGTTTGAAAGAGC 58.138 34.615 4.59 0.00 45.83 4.09
1680 1762 7.915397 GCTATTTGTCAGAAACTTGTGAGAAAA 59.085 33.333 13.50 7.54 43.43 2.29
1681 1763 9.787532 CTATTTGTCAGAAACTTGTGAGAAAAA 57.212 29.630 13.50 5.65 43.43 1.94
1683 1765 8.464770 TTTGTCAGAAACTTGTGAGAAAAATG 57.535 30.769 8.79 0.00 39.57 2.32
1684 1766 6.563422 TGTCAGAAACTTGTGAGAAAAATGG 58.437 36.000 0.00 0.00 30.52 3.16
1685 1767 5.460091 GTCAGAAACTTGTGAGAAAAATGGC 59.540 40.000 0.00 0.00 30.52 4.40
1686 1768 4.746611 CAGAAACTTGTGAGAAAAATGGCC 59.253 41.667 0.00 0.00 0.00 5.36
1687 1769 4.651045 AGAAACTTGTGAGAAAAATGGCCT 59.349 37.500 3.32 0.00 0.00 5.19
1688 1770 4.590850 AACTTGTGAGAAAAATGGCCTC 57.409 40.909 3.32 0.00 0.00 4.70
1689 1771 2.554032 ACTTGTGAGAAAAATGGCCTCG 59.446 45.455 3.32 0.00 0.00 4.63
1690 1772 1.533625 TGTGAGAAAAATGGCCTCGG 58.466 50.000 3.32 0.00 0.00 4.63
1691 1773 1.202879 TGTGAGAAAAATGGCCTCGGT 60.203 47.619 3.32 0.00 0.00 4.69
1692 1774 1.886542 GTGAGAAAAATGGCCTCGGTT 59.113 47.619 3.32 0.00 0.00 4.44
1693 1775 1.885887 TGAGAAAAATGGCCTCGGTTG 59.114 47.619 3.32 0.00 0.00 3.77
1694 1776 2.159382 GAGAAAAATGGCCTCGGTTGA 58.841 47.619 3.32 0.00 0.00 3.18
1695 1777 2.755103 GAGAAAAATGGCCTCGGTTGAT 59.245 45.455 3.32 0.00 0.00 2.57
1696 1778 3.165071 AGAAAAATGGCCTCGGTTGATT 58.835 40.909 3.32 0.00 0.00 2.57
1697 1779 3.578282 AGAAAAATGGCCTCGGTTGATTT 59.422 39.130 3.32 0.00 0.00 2.17
1698 1780 3.317603 AAAATGGCCTCGGTTGATTTG 57.682 42.857 3.32 0.00 0.00 2.32
1699 1781 0.532115 AATGGCCTCGGTTGATTTGC 59.468 50.000 3.32 0.00 0.00 3.68
1700 1782 0.323725 ATGGCCTCGGTTGATTTGCT 60.324 50.000 3.32 0.00 0.00 3.91
1701 1783 0.960364 TGGCCTCGGTTGATTTGCTC 60.960 55.000 3.32 0.00 0.00 4.26
1702 1784 1.657751 GGCCTCGGTTGATTTGCTCC 61.658 60.000 0.00 0.00 0.00 4.70
1703 1785 1.657751 GCCTCGGTTGATTTGCTCCC 61.658 60.000 0.00 0.00 0.00 4.30
1704 1786 1.032114 CCTCGGTTGATTTGCTCCCC 61.032 60.000 0.00 0.00 0.00 4.81
1705 1787 0.322456 CTCGGTTGATTTGCTCCCCA 60.322 55.000 0.00 0.00 0.00 4.96
1706 1788 0.608035 TCGGTTGATTTGCTCCCCAC 60.608 55.000 0.00 0.00 0.00 4.61
1707 1789 0.609131 CGGTTGATTTGCTCCCCACT 60.609 55.000 0.00 0.00 0.00 4.00
1708 1790 1.632589 GGTTGATTTGCTCCCCACTT 58.367 50.000 0.00 0.00 0.00 3.16
1709 1791 1.546029 GGTTGATTTGCTCCCCACTTC 59.454 52.381 0.00 0.00 0.00 3.01
1710 1792 2.519013 GTTGATTTGCTCCCCACTTCT 58.481 47.619 0.00 0.00 0.00 2.85
1711 1793 2.893489 GTTGATTTGCTCCCCACTTCTT 59.107 45.455 0.00 0.00 0.00 2.52
1712 1794 2.795329 TGATTTGCTCCCCACTTCTTC 58.205 47.619 0.00 0.00 0.00 2.87
1713 1795 2.376518 TGATTTGCTCCCCACTTCTTCT 59.623 45.455 0.00 0.00 0.00 2.85
1714 1796 2.568623 TTTGCTCCCCACTTCTTCTC 57.431 50.000 0.00 0.00 0.00 2.87
1715 1797 0.693049 TTGCTCCCCACTTCTTCTCC 59.307 55.000 0.00 0.00 0.00 3.71
1716 1798 1.219393 GCTCCCCACTTCTTCTCCG 59.781 63.158 0.00 0.00 0.00 4.63
1717 1799 1.258445 GCTCCCCACTTCTTCTCCGA 61.258 60.000 0.00 0.00 0.00 4.55
1718 1800 0.533032 CTCCCCACTTCTTCTCCGAC 59.467 60.000 0.00 0.00 0.00 4.79
1719 1801 0.903454 TCCCCACTTCTTCTCCGACC 60.903 60.000 0.00 0.00 0.00 4.79
1720 1802 1.597461 CCCACTTCTTCTCCGACCC 59.403 63.158 0.00 0.00 0.00 4.46
1721 1803 1.215647 CCACTTCTTCTCCGACCCG 59.784 63.158 0.00 0.00 0.00 5.28
1722 1804 1.533469 CCACTTCTTCTCCGACCCGT 61.533 60.000 0.00 0.00 0.00 5.28
1723 1805 0.317479 CACTTCTTCTCCGACCCGTT 59.683 55.000 0.00 0.00 0.00 4.44
1724 1806 1.046204 ACTTCTTCTCCGACCCGTTT 58.954 50.000 0.00 0.00 0.00 3.60
1725 1807 1.415289 ACTTCTTCTCCGACCCGTTTT 59.585 47.619 0.00 0.00 0.00 2.43
1726 1808 2.067013 CTTCTTCTCCGACCCGTTTTC 58.933 52.381 0.00 0.00 0.00 2.29
1727 1809 0.319405 TCTTCTCCGACCCGTTTTCC 59.681 55.000 0.00 0.00 0.00 3.13
1728 1810 1.005867 TTCTCCGACCCGTTTTCCG 60.006 57.895 0.00 0.00 0.00 4.30
1729 1811 3.116531 CTCCGACCCGTTTTCCGC 61.117 66.667 0.00 0.00 34.38 5.54
1730 1812 3.584868 CTCCGACCCGTTTTCCGCT 62.585 63.158 0.00 0.00 34.38 5.52
1731 1813 2.667199 CCGACCCGTTTTCCGCTT 60.667 61.111 0.00 0.00 34.38 4.68
1732 1814 2.674084 CCGACCCGTTTTCCGCTTC 61.674 63.158 0.00 0.00 34.38 3.86
1733 1815 2.674084 CGACCCGTTTTCCGCTTCC 61.674 63.158 0.00 0.00 34.38 3.46
1734 1816 2.667199 ACCCGTTTTCCGCTTCCG 60.667 61.111 0.00 0.00 34.38 4.30
1752 1834 2.240230 GGTCGAACCGCACATTTCA 58.760 52.632 0.00 0.00 0.00 2.69
1753 1835 0.110373 GGTCGAACCGCACATTTCAC 60.110 55.000 0.00 0.00 0.00 3.18
1754 1836 0.110373 GTCGAACCGCACATTTCACC 60.110 55.000 0.00 0.00 0.00 4.02
1755 1837 0.533085 TCGAACCGCACATTTCACCA 60.533 50.000 0.00 0.00 0.00 4.17
1756 1838 0.385473 CGAACCGCACATTTCACCAC 60.385 55.000 0.00 0.00 0.00 4.16
1757 1839 0.385473 GAACCGCACATTTCACCACG 60.385 55.000 0.00 0.00 0.00 4.94
1758 1840 0.816018 AACCGCACATTTCACCACGA 60.816 50.000 0.00 0.00 0.00 4.35
1759 1841 0.816018 ACCGCACATTTCACCACGAA 60.816 50.000 0.00 0.00 0.00 3.85
1760 1842 0.385473 CCGCACATTTCACCACGAAC 60.385 55.000 0.00 0.00 31.73 3.95
1761 1843 0.306228 CGCACATTTCACCACGAACA 59.694 50.000 0.00 0.00 31.73 3.18
1762 1844 1.268285 CGCACATTTCACCACGAACAA 60.268 47.619 0.00 0.00 31.73 2.83
1763 1845 2.604373 CGCACATTTCACCACGAACAAT 60.604 45.455 0.00 0.00 31.73 2.71
1764 1846 2.725723 GCACATTTCACCACGAACAATG 59.274 45.455 0.00 0.00 31.73 2.82
1765 1847 3.549827 GCACATTTCACCACGAACAATGA 60.550 43.478 0.00 0.00 31.73 2.57
1766 1848 3.974401 CACATTTCACCACGAACAATGAC 59.026 43.478 0.00 0.00 31.73 3.06
1767 1849 3.882888 ACATTTCACCACGAACAATGACT 59.117 39.130 0.00 0.00 31.73 3.41
1768 1850 5.049749 CACATTTCACCACGAACAATGACTA 60.050 40.000 0.00 0.00 31.73 2.59
1769 1851 5.179368 ACATTTCACCACGAACAATGACTAG 59.821 40.000 0.00 0.00 31.73 2.57
1770 1852 4.330944 TTCACCACGAACAATGACTAGT 57.669 40.909 0.00 0.00 0.00 2.57
1771 1853 3.649073 TCACCACGAACAATGACTAGTG 58.351 45.455 0.00 0.00 0.00 2.74
1772 1854 3.069016 TCACCACGAACAATGACTAGTGT 59.931 43.478 0.00 0.00 36.54 3.55
1773 1855 3.807622 CACCACGAACAATGACTAGTGTT 59.192 43.478 0.00 0.00 46.62 3.32
1774 1856 3.807622 ACCACGAACAATGACTAGTGTTG 59.192 43.478 0.00 8.06 44.28 3.33
1775 1857 3.186409 CCACGAACAATGACTAGTGTTGG 59.814 47.826 17.34 11.50 44.28 3.77
1776 1858 3.186409 CACGAACAATGACTAGTGTTGGG 59.814 47.826 17.34 10.82 44.28 4.12
1777 1859 3.070446 ACGAACAATGACTAGTGTTGGGA 59.930 43.478 17.34 0.00 44.28 4.37
1778 1860 4.253685 CGAACAATGACTAGTGTTGGGAT 58.746 43.478 17.34 7.23 44.28 3.85
1779 1861 4.093408 CGAACAATGACTAGTGTTGGGATG 59.907 45.833 17.34 4.12 44.28 3.51
1780 1862 3.347216 ACAATGACTAGTGTTGGGATGC 58.653 45.455 17.34 0.00 29.47 3.91
1781 1863 2.684881 CAATGACTAGTGTTGGGATGCC 59.315 50.000 0.00 0.00 0.00 4.40
1782 1864 1.656587 TGACTAGTGTTGGGATGCCT 58.343 50.000 0.00 0.00 0.00 4.75
1783 1865 1.555075 TGACTAGTGTTGGGATGCCTC 59.445 52.381 0.00 0.00 0.00 4.70
1784 1866 0.537188 ACTAGTGTTGGGATGCCTCG 59.463 55.000 4.35 0.00 0.00 4.63
1785 1867 0.811616 CTAGTGTTGGGATGCCTCGC 60.812 60.000 4.35 4.70 35.01 5.03
1786 1868 1.549243 TAGTGTTGGGATGCCTCGCA 61.549 55.000 4.35 4.61 44.86 5.10
1795 1877 3.785859 TGCCTCGCATCCCTGTCC 61.786 66.667 0.00 0.00 31.71 4.02
1796 1878 4.899239 GCCTCGCATCCCTGTCCG 62.899 72.222 0.00 0.00 0.00 4.79
1797 1879 3.147595 CCTCGCATCCCTGTCCGA 61.148 66.667 0.00 0.00 0.00 4.55
1798 1880 2.415010 CTCGCATCCCTGTCCGAG 59.585 66.667 0.00 0.00 40.76 4.63
1799 1881 3.781770 CTCGCATCCCTGTCCGAGC 62.782 68.421 0.00 0.00 40.35 5.03
1800 1882 4.899239 CGCATCCCTGTCCGAGCC 62.899 72.222 0.00 0.00 0.00 4.70
1801 1883 3.785859 GCATCCCTGTCCGAGCCA 61.786 66.667 0.00 0.00 0.00 4.75
1802 1884 3.112205 GCATCCCTGTCCGAGCCAT 62.112 63.158 0.00 0.00 0.00 4.40
1803 1885 1.070445 CATCCCTGTCCGAGCCATC 59.930 63.158 0.00 0.00 0.00 3.51
1804 1886 1.074926 ATCCCTGTCCGAGCCATCT 60.075 57.895 0.00 0.00 0.00 2.90
1805 1887 1.118356 ATCCCTGTCCGAGCCATCTC 61.118 60.000 0.00 0.00 35.99 2.75
1806 1888 2.801631 CCCTGTCCGAGCCATCTCC 61.802 68.421 0.00 0.00 35.94 3.71
1807 1889 2.060383 CCTGTCCGAGCCATCTCCA 61.060 63.158 0.00 0.00 35.94 3.86
1808 1890 1.142748 CTGTCCGAGCCATCTCCAC 59.857 63.158 0.00 0.00 35.94 4.02
1809 1891 2.105128 GTCCGAGCCATCTCCACG 59.895 66.667 0.00 0.00 35.94 4.94
1810 1892 3.147595 TCCGAGCCATCTCCACGG 61.148 66.667 0.00 0.00 44.09 4.94
1837 1919 4.426313 CGCCACCCTCCCCCTTTC 62.426 72.222 0.00 0.00 0.00 2.62
1838 1920 2.941583 GCCACCCTCCCCCTTTCT 60.942 66.667 0.00 0.00 0.00 2.52
1839 1921 2.548547 GCCACCCTCCCCCTTTCTT 61.549 63.158 0.00 0.00 0.00 2.52
1840 1922 1.691823 CCACCCTCCCCCTTTCTTC 59.308 63.158 0.00 0.00 0.00 2.87
1841 1923 1.691823 CACCCTCCCCCTTTCTTCC 59.308 63.158 0.00 0.00 0.00 3.46
1842 1924 1.544151 ACCCTCCCCCTTTCTTCCC 60.544 63.158 0.00 0.00 0.00 3.97
1843 1925 2.317378 CCCTCCCCCTTTCTTCCCC 61.317 68.421 0.00 0.00 0.00 4.81
1844 1926 1.230314 CCTCCCCCTTTCTTCCCCT 60.230 63.158 0.00 0.00 0.00 4.79
1845 1927 0.045778 CCTCCCCCTTTCTTCCCCTA 59.954 60.000 0.00 0.00 0.00 3.53
1846 1928 1.559584 CCTCCCCCTTTCTTCCCCTAA 60.560 57.143 0.00 0.00 0.00 2.69
1847 1929 1.847088 CTCCCCCTTTCTTCCCCTAAG 59.153 57.143 0.00 0.00 36.45 2.18
1929 2012 6.036953 ACGTAAAAACCGACATGACAAAACTA 59.963 34.615 0.00 0.00 0.00 2.24
1939 2022 9.840427 CCGACATGACAAAACTAAAAAGATAAT 57.160 29.630 0.00 0.00 0.00 1.28
2003 2086 0.535102 GCACTACCACAACAGCCACT 60.535 55.000 0.00 0.00 0.00 4.00
2029 2114 4.223923 AGAAAAGAATGACGGATCACCTCT 59.776 41.667 0.00 0.00 37.79 3.69
2035 2120 1.187087 GACGGATCACCTCTTCACCT 58.813 55.000 0.00 0.00 0.00 4.00
2041 2126 1.722034 TCACCTCTTCACCTGAGCTT 58.278 50.000 0.00 0.00 0.00 3.74
2057 2142 3.699955 CTTGACGCGGCTCCATCGA 62.700 63.158 15.80 0.00 0.00 3.59
2259 2344 3.244561 ACACATTCCGTCTTCCAGATGTT 60.245 43.478 0.00 0.00 29.27 2.71
2263 2348 2.248248 TCCGTCTTCCAGATGTTGTCT 58.752 47.619 0.00 0.00 37.80 3.41
2271 2356 5.129980 TCTTCCAGATGTTGTCTATGCAGAT 59.870 40.000 0.00 0.00 34.69 2.90
2308 2393 0.909610 CCTGGACTACCTCCCAAGCA 60.910 60.000 0.00 0.00 38.49 3.91
2314 2399 2.521958 CTACCTCCCAAGCACCACGG 62.522 65.000 0.00 0.00 0.00 4.94
2450 2538 1.674057 CATAGGACCGATGGCCTCC 59.326 63.158 3.32 1.12 32.93 4.30
2482 2570 7.366847 AGGATCCGAAGAATCTTTATTCAGA 57.633 36.000 5.98 0.00 43.44 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 160 2.034879 CCGACGCTGGAGCAAACAT 61.035 57.895 0.00 0.00 42.21 2.71
274 275 6.575056 CGAAGGAGGAAATCATATCTGCCATA 60.575 42.308 0.00 0.00 0.00 2.74
316 317 2.223688 CGAACTCCAGATCTAGCACCTG 60.224 54.545 0.00 0.00 0.00 4.00
317 318 2.028130 CGAACTCCAGATCTAGCACCT 58.972 52.381 0.00 0.00 0.00 4.00
342 343 4.314440 GGCAGCACTCCGGACACA 62.314 66.667 0.00 0.00 0.00 3.72
351 352 2.129555 AATCAGAACGGGGCAGCACT 62.130 55.000 0.00 0.00 0.00 4.40
355 356 1.672881 GAATGAATCAGAACGGGGCAG 59.327 52.381 0.00 0.00 0.00 4.85
363 364 4.941263 CCCTTACCGTTGAATGAATCAGAA 59.059 41.667 0.00 0.00 39.77 3.02
372 373 2.039879 AGTGAAGCCCTTACCGTTGAAT 59.960 45.455 0.00 0.00 0.00 2.57
449 451 1.228894 ACCTTCTCACCCGAGCTCA 60.229 57.895 15.40 0.00 39.30 4.26
552 554 7.307989 CCGACATGACAAAACTGAAAAGATAGT 60.308 37.037 0.00 0.00 0.00 2.12
646 648 5.730550 AGTCTTACATTCCAATGCGAACTA 58.269 37.500 0.00 0.00 40.04 2.24
648 650 4.946784 AGTCTTACATTCCAATGCGAAC 57.053 40.909 0.00 0.00 40.04 3.95
649 651 8.902540 ATATAAGTCTTACATTCCAATGCGAA 57.097 30.769 0.00 0.00 40.04 4.70
650 652 8.367911 AGATATAAGTCTTACATTCCAATGCGA 58.632 33.333 0.00 0.00 40.04 5.10
651 653 8.539770 AGATATAAGTCTTACATTCCAATGCG 57.460 34.615 0.00 0.00 40.04 4.73
675 677 5.986501 ACAAGTACTCCCTCTGTTTCTAG 57.013 43.478 0.00 0.00 0.00 2.43
683 685 3.581770 GGGTTGTAACAAGTACTCCCTCT 59.418 47.826 0.00 0.00 40.84 3.69
691 693 0.036590 GGGCCGGGTTGTAACAAGTA 59.963 55.000 2.18 0.00 0.00 2.24
693 695 0.824182 TTGGGCCGGGTTGTAACAAG 60.824 55.000 2.18 0.00 0.00 3.16
694 696 0.178958 ATTGGGCCGGGTTGTAACAA 60.179 50.000 2.18 0.00 0.00 2.83
701 703 1.536676 CCTATGATTGGGCCGGGTT 59.463 57.895 2.18 0.00 0.00 4.11
852 861 6.374053 TGAATTCTGAATCAAGATTTGCCGTA 59.626 34.615 7.05 0.00 0.00 4.02
877 886 6.667414 AGATTGCTCTCCTTCCTAATCGATAT 59.333 38.462 0.00 0.00 31.67 1.63
878 887 6.013379 AGATTGCTCTCCTTCCTAATCGATA 58.987 40.000 0.00 0.00 31.67 2.92
988 1008 7.067008 TCGTCTTGATGAGTAGTGATTGTGATA 59.933 37.037 0.00 0.00 0.00 2.15
1015 1036 2.159282 TGTTACGCCGAGAGAGGATTTC 60.159 50.000 0.00 0.00 0.00 2.17
1185 1227 2.096980 AGATGTCAAGTACGCGATCGAA 59.903 45.455 21.57 0.00 39.41 3.71
1211 1273 2.166459 TCAGATCAACATCGGTCAGACC 59.834 50.000 9.92 9.92 33.75 3.85
1436 1506 6.153510 GGGAAACTTAAAATCAGAGCCTTGAT 59.846 38.462 0.00 0.00 39.42 2.57
1464 1534 0.947244 GCATCCGGCCACAAGATAAG 59.053 55.000 2.24 0.00 36.11 1.73
1482 1552 3.845781 TCCTGAATTCCTGATACTGGC 57.154 47.619 2.27 0.00 0.00 4.85
1535 1612 2.478894 ACACGGATCGACACAAACATTC 59.521 45.455 0.00 0.00 0.00 2.67
1563 1644 5.632244 AATTGTTTATTGACACGGGGTAC 57.368 39.130 0.00 0.00 0.00 3.34
1593 1674 6.349243 TCAGAAAATGCAACAGGAATCATT 57.651 33.333 0.00 0.00 0.00 2.57
1630 1711 5.385617 CGGCTCTTTCAAACTGAAACATAG 58.614 41.667 0.00 0.00 41.02 2.23
1633 1714 2.357637 CCGGCTCTTTCAAACTGAAACA 59.642 45.455 0.00 0.00 41.02 2.83
1648 1729 2.024176 TTCTGACAAATAGCCGGCTC 57.976 50.000 36.73 18.90 0.00 4.70
1649 1730 2.084546 GTTTCTGACAAATAGCCGGCT 58.915 47.619 34.85 34.85 0.00 5.52
1651 1732 3.502211 ACAAGTTTCTGACAAATAGCCGG 59.498 43.478 0.00 0.00 0.00 6.13
1680 1762 0.532115 GCAAATCAACCGAGGCCATT 59.468 50.000 5.01 0.00 0.00 3.16
1681 1763 0.323725 AGCAAATCAACCGAGGCCAT 60.324 50.000 5.01 0.00 0.00 4.40
1682 1764 0.960364 GAGCAAATCAACCGAGGCCA 60.960 55.000 5.01 0.00 0.00 5.36
1683 1765 1.657751 GGAGCAAATCAACCGAGGCC 61.658 60.000 0.00 0.00 0.00 5.19
1684 1766 1.657751 GGGAGCAAATCAACCGAGGC 61.658 60.000 0.00 0.00 0.00 4.70
1685 1767 1.032114 GGGGAGCAAATCAACCGAGG 61.032 60.000 0.00 0.00 0.00 4.63
1686 1768 0.322456 TGGGGAGCAAATCAACCGAG 60.322 55.000 0.00 0.00 31.03 4.63
1687 1769 0.608035 GTGGGGAGCAAATCAACCGA 60.608 55.000 0.00 0.00 31.03 4.69
1688 1770 0.609131 AGTGGGGAGCAAATCAACCG 60.609 55.000 0.00 0.00 31.03 4.44
1689 1771 1.546029 GAAGTGGGGAGCAAATCAACC 59.454 52.381 0.00 0.00 0.00 3.77
1690 1772 2.519013 AGAAGTGGGGAGCAAATCAAC 58.481 47.619 0.00 0.00 0.00 3.18
1691 1773 2.978156 AGAAGTGGGGAGCAAATCAA 57.022 45.000 0.00 0.00 0.00 2.57
1692 1774 2.376518 AGAAGAAGTGGGGAGCAAATCA 59.623 45.455 0.00 0.00 0.00 2.57
1693 1775 3.013219 GAGAAGAAGTGGGGAGCAAATC 58.987 50.000 0.00 0.00 0.00 2.17
1694 1776 2.291217 GGAGAAGAAGTGGGGAGCAAAT 60.291 50.000 0.00 0.00 0.00 2.32
1695 1777 1.073923 GGAGAAGAAGTGGGGAGCAAA 59.926 52.381 0.00 0.00 0.00 3.68
1696 1778 0.693049 GGAGAAGAAGTGGGGAGCAA 59.307 55.000 0.00 0.00 0.00 3.91
1697 1779 1.544825 CGGAGAAGAAGTGGGGAGCA 61.545 60.000 0.00 0.00 0.00 4.26
1698 1780 1.219393 CGGAGAAGAAGTGGGGAGC 59.781 63.158 0.00 0.00 0.00 4.70
1699 1781 0.533032 GTCGGAGAAGAAGTGGGGAG 59.467 60.000 0.00 0.00 39.69 4.30
1700 1782 0.903454 GGTCGGAGAAGAAGTGGGGA 60.903 60.000 0.00 0.00 39.69 4.81
1701 1783 1.597461 GGTCGGAGAAGAAGTGGGG 59.403 63.158 0.00 0.00 39.69 4.96
1702 1784 1.597461 GGGTCGGAGAAGAAGTGGG 59.403 63.158 0.00 0.00 39.69 4.61
1703 1785 1.215647 CGGGTCGGAGAAGAAGTGG 59.784 63.158 0.00 0.00 39.69 4.00
1704 1786 0.317479 AACGGGTCGGAGAAGAAGTG 59.683 55.000 0.00 0.00 39.69 3.16
1705 1787 1.046204 AAACGGGTCGGAGAAGAAGT 58.954 50.000 0.00 0.00 39.69 3.01
1706 1788 2.067013 GAAAACGGGTCGGAGAAGAAG 58.933 52.381 0.00 0.00 39.69 2.85
1707 1789 1.270465 GGAAAACGGGTCGGAGAAGAA 60.270 52.381 0.00 0.00 39.69 2.52
1708 1790 0.319405 GGAAAACGGGTCGGAGAAGA 59.681 55.000 0.00 0.00 39.69 2.87
1709 1791 1.012486 CGGAAAACGGGTCGGAGAAG 61.012 60.000 0.00 0.00 37.29 2.85
1710 1792 1.005867 CGGAAAACGGGTCGGAGAA 60.006 57.895 0.00 0.00 37.29 2.87
1711 1793 2.652530 CGGAAAACGGGTCGGAGA 59.347 61.111 0.00 0.00 39.42 3.71
1712 1794 3.116531 GCGGAAAACGGGTCGGAG 61.117 66.667 0.00 0.00 44.51 4.63
1713 1795 3.167822 AAGCGGAAAACGGGTCGGA 62.168 57.895 0.00 0.00 44.51 4.55
1714 1796 2.667199 AAGCGGAAAACGGGTCGG 60.667 61.111 0.00 0.00 44.51 4.79
1715 1797 2.674084 GGAAGCGGAAAACGGGTCG 61.674 63.158 0.00 0.00 44.51 4.79
1716 1798 2.674084 CGGAAGCGGAAAACGGGTC 61.674 63.158 0.00 0.00 44.51 4.46
1717 1799 2.667199 CGGAAGCGGAAAACGGGT 60.667 61.111 0.00 0.00 44.51 5.28
1718 1800 3.428282 CCGGAAGCGGAAAACGGG 61.428 66.667 0.00 0.00 44.51 5.28
1721 1803 1.223417 TTCGACCGGAAGCGGAAAAC 61.223 55.000 9.46 0.00 0.00 2.43
1722 1804 1.069427 TTCGACCGGAAGCGGAAAA 59.931 52.632 9.46 0.00 0.00 2.29
1723 1805 1.665599 GTTCGACCGGAAGCGGAAA 60.666 57.895 9.46 0.00 34.69 3.13
1724 1806 2.048877 GTTCGACCGGAAGCGGAA 60.049 61.111 9.46 0.50 34.69 4.30
1725 1807 4.060038 GGTTCGACCGGAAGCGGA 62.060 66.667 9.46 0.00 42.63 5.54
1734 1816 0.110373 GTGAAATGTGCGGTTCGACC 60.110 55.000 0.00 0.00 34.05 4.79
1735 1817 0.110373 GGTGAAATGTGCGGTTCGAC 60.110 55.000 0.00 0.00 0.00 4.20
1736 1818 0.533085 TGGTGAAATGTGCGGTTCGA 60.533 50.000 0.00 0.00 0.00 3.71
1737 1819 0.385473 GTGGTGAAATGTGCGGTTCG 60.385 55.000 0.00 0.00 0.00 3.95
1738 1820 0.385473 CGTGGTGAAATGTGCGGTTC 60.385 55.000 0.00 0.00 0.00 3.62
1739 1821 0.816018 TCGTGGTGAAATGTGCGGTT 60.816 50.000 0.00 0.00 0.00 4.44
1740 1822 0.816018 TTCGTGGTGAAATGTGCGGT 60.816 50.000 0.00 0.00 32.37 5.68
1741 1823 0.385473 GTTCGTGGTGAAATGTGCGG 60.385 55.000 0.00 0.00 38.60 5.69
1742 1824 0.306228 TGTTCGTGGTGAAATGTGCG 59.694 50.000 0.00 0.00 38.60 5.34
1743 1825 2.483583 TTGTTCGTGGTGAAATGTGC 57.516 45.000 0.00 0.00 38.60 4.57
1744 1826 3.974401 GTCATTGTTCGTGGTGAAATGTG 59.026 43.478 0.00 0.00 38.60 3.21
1745 1827 3.882888 AGTCATTGTTCGTGGTGAAATGT 59.117 39.130 0.00 0.00 38.60 2.71
1746 1828 4.488126 AGTCATTGTTCGTGGTGAAATG 57.512 40.909 0.00 0.00 38.60 2.32
1747 1829 5.179368 CACTAGTCATTGTTCGTGGTGAAAT 59.821 40.000 0.00 0.00 38.60 2.17
1748 1830 4.509970 CACTAGTCATTGTTCGTGGTGAAA 59.490 41.667 0.00 0.00 38.60 2.69
1749 1831 4.055360 CACTAGTCATTGTTCGTGGTGAA 58.945 43.478 0.00 0.00 0.00 3.18
1750 1832 3.069016 ACACTAGTCATTGTTCGTGGTGA 59.931 43.478 0.00 0.00 0.00 4.02
1751 1833 3.390135 ACACTAGTCATTGTTCGTGGTG 58.610 45.455 0.00 0.00 0.00 4.17
1752 1834 3.746045 ACACTAGTCATTGTTCGTGGT 57.254 42.857 0.00 0.00 0.00 4.16
1753 1835 3.186409 CCAACACTAGTCATTGTTCGTGG 59.814 47.826 13.05 2.22 33.59 4.94
1754 1836 3.186409 CCCAACACTAGTCATTGTTCGTG 59.814 47.826 13.05 0.00 33.59 4.35
1755 1837 3.070446 TCCCAACACTAGTCATTGTTCGT 59.930 43.478 13.05 0.00 33.59 3.85
1756 1838 3.659786 TCCCAACACTAGTCATTGTTCG 58.340 45.455 13.05 0.25 33.59 3.95
1757 1839 4.142600 GCATCCCAACACTAGTCATTGTTC 60.143 45.833 13.05 0.00 33.59 3.18
1758 1840 3.758554 GCATCCCAACACTAGTCATTGTT 59.241 43.478 13.05 3.74 36.35 2.83
1759 1841 3.347216 GCATCCCAACACTAGTCATTGT 58.653 45.455 13.05 0.00 0.00 2.71
1760 1842 2.684881 GGCATCCCAACACTAGTCATTG 59.315 50.000 8.78 8.78 0.00 2.82
1761 1843 2.578021 AGGCATCCCAACACTAGTCATT 59.422 45.455 0.00 0.00 0.00 2.57
1762 1844 2.171448 GAGGCATCCCAACACTAGTCAT 59.829 50.000 0.00 0.00 0.00 3.06
1763 1845 1.555075 GAGGCATCCCAACACTAGTCA 59.445 52.381 0.00 0.00 0.00 3.41
1764 1846 1.471676 CGAGGCATCCCAACACTAGTC 60.472 57.143 0.00 0.00 0.00 2.59
1765 1847 0.537188 CGAGGCATCCCAACACTAGT 59.463 55.000 0.00 0.00 0.00 2.57
1766 1848 0.811616 GCGAGGCATCCCAACACTAG 60.812 60.000 0.00 0.00 0.00 2.57
1767 1849 1.220749 GCGAGGCATCCCAACACTA 59.779 57.895 0.00 0.00 0.00 2.74
1768 1850 2.045926 GCGAGGCATCCCAACACT 60.046 61.111 0.00 0.00 0.00 3.55
1769 1851 2.359850 TGCGAGGCATCCCAACAC 60.360 61.111 0.00 0.00 31.71 3.32
1778 1860 3.785859 GGACAGGGATGCGAGGCA 61.786 66.667 0.00 0.00 44.86 4.75
1779 1861 4.899239 CGGACAGGGATGCGAGGC 62.899 72.222 0.00 0.00 35.06 4.70
1780 1862 3.147595 TCGGACAGGGATGCGAGG 61.148 66.667 0.00 0.00 37.53 4.63
1782 1864 3.838271 GCTCGGACAGGGATGCGA 61.838 66.667 0.00 0.00 40.38 5.10
1783 1865 4.899239 GGCTCGGACAGGGATGCG 62.899 72.222 0.00 0.00 34.29 4.73
1784 1866 3.112205 ATGGCTCGGACAGGGATGC 62.112 63.158 0.00 0.00 0.00 3.91
1785 1867 1.070445 GATGGCTCGGACAGGGATG 59.930 63.158 0.00 0.00 0.00 3.51
1786 1868 1.074926 AGATGGCTCGGACAGGGAT 60.075 57.895 0.00 0.00 0.00 3.85
1787 1869 1.758514 GAGATGGCTCGGACAGGGA 60.759 63.158 0.00 0.00 0.00 4.20
1788 1870 2.801631 GGAGATGGCTCGGACAGGG 61.802 68.421 0.00 0.00 42.25 4.45
1789 1871 2.060383 TGGAGATGGCTCGGACAGG 61.060 63.158 0.00 0.00 42.25 4.00
1790 1872 1.142748 GTGGAGATGGCTCGGACAG 59.857 63.158 0.00 0.00 42.25 3.51
1791 1873 2.710902 CGTGGAGATGGCTCGGACA 61.711 63.158 0.00 0.00 42.25 4.02
1792 1874 2.105128 CGTGGAGATGGCTCGGAC 59.895 66.667 0.00 0.00 42.25 4.79
1793 1875 3.147595 CCGTGGAGATGGCTCGGA 61.148 66.667 0.00 0.00 43.22 4.55
1820 1902 4.426313 GAAAGGGGGAGGGTGGCG 62.426 72.222 0.00 0.00 0.00 5.69
1821 1903 2.500815 GAAGAAAGGGGGAGGGTGGC 62.501 65.000 0.00 0.00 0.00 5.01
1822 1904 1.691823 GAAGAAAGGGGGAGGGTGG 59.308 63.158 0.00 0.00 0.00 4.61
1823 1905 1.691823 GGAAGAAAGGGGGAGGGTG 59.308 63.158 0.00 0.00 0.00 4.61
1824 1906 1.544151 GGGAAGAAAGGGGGAGGGT 60.544 63.158 0.00 0.00 0.00 4.34
1825 1907 2.317378 GGGGAAGAAAGGGGGAGGG 61.317 68.421 0.00 0.00 0.00 4.30
1826 1908 0.045778 TAGGGGAAGAAAGGGGGAGG 59.954 60.000 0.00 0.00 0.00 4.30
1827 1909 1.847088 CTTAGGGGAAGAAAGGGGGAG 59.153 57.143 0.00 0.00 37.33 4.30
1828 1910 1.981259 CTTAGGGGAAGAAAGGGGGA 58.019 55.000 0.00 0.00 37.33 4.81
1829 1911 0.259065 GCTTAGGGGAAGAAAGGGGG 59.741 60.000 0.00 0.00 37.33 5.40
1830 1912 1.299939 AGCTTAGGGGAAGAAAGGGG 58.700 55.000 0.00 0.00 37.33 4.79
1831 1913 3.458044 AAAGCTTAGGGGAAGAAAGGG 57.542 47.619 0.00 0.00 37.33 3.95
1859 1942 7.872881 ACGATATGAATGAGACACGTATTACT 58.127 34.615 0.00 0.00 0.00 2.24
1939 2022 4.081972 GGTGTCAAGCTCAGAGATGTTCTA 60.082 45.833 0.00 0.00 33.83 2.10
1981 2064 1.301401 GCTGTTGTGGTAGTGCCGA 60.301 57.895 0.00 0.00 41.21 5.54
1988 2071 1.765904 TCTTCAGTGGCTGTTGTGGTA 59.234 47.619 0.00 0.00 32.61 3.25
2003 2086 4.695455 GGTGATCCGTCATTCTTTTCTTCA 59.305 41.667 0.00 0.00 36.60 3.02
2029 2114 1.664649 CGCGTCAAGCTCAGGTGAA 60.665 57.895 0.00 0.00 45.59 3.18
2041 2126 3.527427 ATCGATGGAGCCGCGTCA 61.527 61.111 4.92 0.00 0.00 4.35
2271 2356 0.462581 GGAGCGGATGCAGATTGTGA 60.463 55.000 0.00 0.00 46.23 3.58
2314 2399 4.430423 CGTTTGCTCCAGCGTCGC 62.430 66.667 9.80 9.80 45.83 5.19
2450 2538 1.781786 TCTTCGGATCCTTCCCTGAG 58.218 55.000 10.75 0.00 39.01 3.35
2500 2588 2.328473 CTGTTCATCGTCTTCGCTTCA 58.672 47.619 0.00 0.00 36.96 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.