Multiple sequence alignment - TraesCS6D01G368000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G368000 chr6D 100.000 3150 0 0 1 3150 455455901 455452752 0.000000e+00 5818
1 TraesCS6D01G368000 chr6D 84.107 560 68 14 1621 2175 455501947 455502490 3.600000e-144 521
2 TraesCS6D01G368000 chr6D 88.959 317 25 3 1044 1353 455501356 455501669 1.770000e-102 383
3 TraesCS6D01G368000 chr6D 92.369 249 18 1 796 1044 158562186 158561939 1.390000e-93 353
4 TraesCS6D01G368000 chr6B 92.393 1262 86 4 1047 2303 692586111 692584855 0.000000e+00 1790
5 TraesCS6D01G368000 chr6B 84.311 1568 192 33 1047 2574 692613276 692611723 0.000000e+00 1483
6 TraesCS6D01G368000 chr6B 86.491 1177 105 31 1047 2183 692597306 692596144 0.000000e+00 1243
7 TraesCS6D01G368000 chr6B 86.806 955 102 7 1633 2574 692715268 692714325 0.000000e+00 1044
8 TraesCS6D01G368000 chr6B 90.327 765 46 8 49 795 658560125 658560879 0.000000e+00 977
9 TraesCS6D01G368000 chr6B 82.258 558 76 11 1400 1942 692733453 692734002 7.960000e-126 460
10 TraesCS6D01G368000 chr6B 86.747 332 32 6 1041 1363 692733045 692733373 2.990000e-95 359
11 TraesCS6D01G368000 chr6B 87.619 315 30 5 1047 1352 692715681 692715367 1.070000e-94 357
12 TraesCS6D01G368000 chr6B 89.420 293 14 6 2298 2577 692583656 692583368 1.390000e-93 353
13 TraesCS6D01G368000 chr6B 77.253 466 79 17 338 794 84103786 84104233 6.750000e-62 248
14 TraesCS6D01G368000 chr6B 83.895 267 34 7 2316 2573 692587467 692587201 2.430000e-61 246
15 TraesCS6D01G368000 chr6B 75.515 437 79 23 341 769 719884252 719883836 4.150000e-44 189
16 TraesCS6D01G368000 chr6B 81.373 204 33 5 2909 3109 53627409 53627610 9.040000e-36 161
17 TraesCS6D01G368000 chr6B 91.781 73 6 0 2181 2253 692587533 692587461 5.560000e-18 102
18 TraesCS6D01G368000 chr2D 97.883 803 7 4 1 798 595526772 595525975 0.000000e+00 1380
19 TraesCS6D01G368000 chr2D 91.700 253 20 1 796 1048 405816326 405816075 1.800000e-92 350
20 TraesCS6D01G368000 chr2D 85.116 215 22 6 2565 2775 605091088 605090880 8.850000e-51 211
21 TraesCS6D01G368000 chr2A 93.040 819 31 6 1 798 47356915 47357728 0.000000e+00 1173
22 TraesCS6D01G368000 chr4B 89.660 764 51 11 52 795 63805540 63804785 0.000000e+00 948
23 TraesCS6D01G368000 chr6A 87.599 629 56 6 1958 2574 602159613 602158995 0.000000e+00 710
24 TraesCS6D01G368000 chr6A 82.487 571 79 14 1621 2186 602169369 602169923 6.110000e-132 481
25 TraesCS6D01G368000 chr6A 90.028 361 27 5 1047 1398 602160007 602159647 2.860000e-125 459
26 TraesCS6D01G368000 chr6A 88.644 317 26 3 1044 1353 602168775 602169088 8.250000e-101 377
27 TraesCS6D01G368000 chr6A 88.013 317 28 3 1044 1353 602340535 602340848 1.790000e-97 366
28 TraesCS6D01G368000 chr6A 83.733 375 46 10 1667 2041 602341178 602341537 1.080000e-89 340
29 TraesCS6D01G368000 chr6A 80.000 230 30 15 2913 3133 594469477 594469255 4.210000e-34 156
30 TraesCS6D01G368000 chr6A 84.416 154 24 0 1400 1553 602169177 602169330 5.440000e-33 152
31 TraesCS6D01G368000 chr6A 84.416 154 24 0 1400 1553 602340937 602341090 5.440000e-33 152
32 TraesCS6D01G368000 chr4D 92.771 249 18 0 796 1044 320046340 320046588 8.310000e-96 361
33 TraesCS6D01G368000 chr4D 86.700 203 19 4 2575 2775 3254898 3254702 5.290000e-53 219
34 TraesCS6D01G368000 chr4D 85.644 202 22 3 2576 2775 496879914 496880110 4.120000e-49 206
35 TraesCS6D01G368000 chr5D 93.004 243 17 0 802 1044 399710878 399710636 3.860000e-94 355
36 TraesCS6D01G368000 chr5D 91.566 249 21 0 796 1044 124408291 124408539 8.360000e-91 344
37 TraesCS6D01G368000 chr5D 92.181 243 19 0 802 1044 218638033 218637791 8.360000e-91 344
38 TraesCS6D01G368000 chr5D 80.093 216 29 10 2909 3117 47803266 47803474 7.040000e-32 148
39 TraesCS6D01G368000 chr7A 91.538 260 17 4 2894 3150 16841531 16841788 1.390000e-93 353
40 TraesCS6D01G368000 chr7A 93.846 130 5 1 2775 2901 16837880 16838009 3.210000e-45 193
41 TraesCS6D01G368000 chr4A 92.593 243 18 0 802 1044 321328274 321328032 1.800000e-92 350
42 TraesCS6D01G368000 chr4A 87.192 203 18 4 2575 2775 602267948 602268144 1.140000e-54 224
43 TraesCS6D01G368000 chr3B 92.245 245 17 1 802 1044 685219302 685219058 2.330000e-91 346
44 TraesCS6D01G368000 chr3B 86.316 190 20 4 4 189 17675831 17675644 5.330000e-48 202
45 TraesCS6D01G368000 chr3D 91.566 249 21 0 796 1044 390669559 390669311 8.360000e-91 344
46 TraesCS6D01G368000 chr3D 79.325 237 33 13 2906 3135 433738590 433738363 5.440000e-33 152
47 TraesCS6D01G368000 chr7D 79.719 498 71 20 316 793 20433859 20434346 1.810000e-87 333
48 TraesCS6D01G368000 chr2B 89.655 203 15 2 2574 2775 789150217 789150414 1.450000e-63 254
49 TraesCS6D01G368000 chr2B 86.190 210 20 5 2569 2775 28014292 28014089 5.290000e-53 219
50 TraesCS6D01G368000 chr2B 85.714 203 22 3 2575 2775 107381163 107380966 1.150000e-49 207
51 TraesCS6D01G368000 chr2B 81.159 207 31 7 2909 3110 174587279 174587076 3.250000e-35 159
52 TraesCS6D01G368000 chr1D 79.328 387 52 18 344 709 9252619 9252240 2.430000e-61 246
53 TraesCS6D01G368000 chr3A 76.639 488 87 20 316 795 508523957 508524425 8.730000e-61 244
54 TraesCS6D01G368000 chr3A 81.132 212 31 6 2928 3135 750215762 750215968 9.040000e-36 161
55 TraesCS6D01G368000 chr3A 76.518 247 48 7 2909 3150 239775270 239775511 3.300000e-25 126
56 TraesCS6D01G368000 chr1B 86.603 209 18 5 2570 2775 453196795 453196594 4.090000e-54 222
57 TraesCS6D01G368000 chr1B 85.784 204 20 4 2575 2775 78820271 78820074 1.150000e-49 207
58 TraesCS6D01G368000 chrUn 80.508 236 39 4 2909 3141 335404066 335404297 1.160000e-39 174
59 TraesCS6D01G368000 chrUn 80.085 236 40 4 2909 3141 437886205 437885974 5.400000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G368000 chr6D 455452752 455455901 3149 True 5818.000000 5818 100.000000 1 3150 1 chr6D.!!$R2 3149
1 TraesCS6D01G368000 chr6D 455501356 455502490 1134 False 452.000000 521 86.533000 1044 2175 2 chr6D.!!$F1 1131
2 TraesCS6D01G368000 chr6B 692611723 692613276 1553 True 1483.000000 1483 84.311000 1047 2574 1 chr6B.!!$R2 1527
3 TraesCS6D01G368000 chr6B 692596144 692597306 1162 True 1243.000000 1243 86.491000 1047 2183 1 chr6B.!!$R1 1136
4 TraesCS6D01G368000 chr6B 658560125 658560879 754 False 977.000000 977 90.327000 49 795 1 chr6B.!!$F3 746
5 TraesCS6D01G368000 chr6B 692714325 692715681 1356 True 700.500000 1044 87.212500 1047 2574 2 chr6B.!!$R5 1527
6 TraesCS6D01G368000 chr6B 692583368 692587533 4165 True 622.750000 1790 89.372250 1047 2577 4 chr6B.!!$R4 1530
7 TraesCS6D01G368000 chr6B 692733045 692734002 957 False 409.500000 460 84.502500 1041 1942 2 chr6B.!!$F4 901
8 TraesCS6D01G368000 chr2D 595525975 595526772 797 True 1380.000000 1380 97.883000 1 798 1 chr2D.!!$R2 797
9 TraesCS6D01G368000 chr2A 47356915 47357728 813 False 1173.000000 1173 93.040000 1 798 1 chr2A.!!$F1 797
10 TraesCS6D01G368000 chr4B 63804785 63805540 755 True 948.000000 948 89.660000 52 795 1 chr4B.!!$R1 743
11 TraesCS6D01G368000 chr6A 602158995 602160007 1012 True 584.500000 710 88.813500 1047 2574 2 chr6A.!!$R2 1527
12 TraesCS6D01G368000 chr6A 602168775 602169923 1148 False 336.666667 481 85.182333 1044 2186 3 chr6A.!!$F1 1142
13 TraesCS6D01G368000 chr6A 602340535 602341537 1002 False 286.000000 366 85.387333 1044 2041 3 chr6A.!!$F2 997
14 TraesCS6D01G368000 chr7A 16837880 16841788 3908 False 273.000000 353 92.692000 2775 3150 2 chr7A.!!$F1 375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
796 821 0.033228 CACCAAAGGCCATTTTCGCA 59.967 50.0 5.01 0.0 0.0 5.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2639 4649 0.106217 AATGCCCATTTACCGAGGGG 60.106 55.0 0.0 0.0 43.04 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
711 736 6.144886 CAGTAAAAATACGGCAGCGTCATATA 59.855 38.462 0.00 0.00 0.00 0.86
714 739 6.642683 AAAATACGGCAGCGTCATATATAC 57.357 37.500 0.00 0.00 0.00 1.47
715 740 5.578005 AATACGGCAGCGTCATATATACT 57.422 39.130 0.00 0.00 0.00 2.12
716 741 3.489180 ACGGCAGCGTCATATATACTC 57.511 47.619 0.00 0.00 0.00 2.59
718 743 3.172050 CGGCAGCGTCATATATACTCAC 58.828 50.000 0.00 0.00 0.00 3.51
719 744 3.172050 GGCAGCGTCATATATACTCACG 58.828 50.000 5.85 5.85 0.00 4.35
720 745 3.366070 GGCAGCGTCATATATACTCACGT 60.366 47.826 10.16 0.00 32.99 4.49
721 746 3.604198 GCAGCGTCATATATACTCACGTG 59.396 47.826 9.94 9.94 32.99 4.49
722 747 4.159120 CAGCGTCATATATACTCACGTGG 58.841 47.826 17.00 9.11 32.99 4.94
723 748 2.915463 GCGTCATATATACTCACGTGGC 59.085 50.000 17.00 2.06 32.99 5.01
725 750 3.912563 CGTCATATATACTCACGTGGCAC 59.087 47.826 17.00 7.79 0.00 5.01
727 752 3.057806 TCATATATACTCACGTGGCACCG 60.058 47.826 17.00 9.88 0.00 4.94
728 753 1.395635 ATATACTCACGTGGCACCGA 58.604 50.000 17.00 8.13 0.00 4.69
729 754 1.395635 TATACTCACGTGGCACCGAT 58.604 50.000 17.00 3.88 0.00 4.18
730 755 0.102481 ATACTCACGTGGCACCGATC 59.898 55.000 17.00 0.00 0.00 3.69
731 756 1.245376 TACTCACGTGGCACCGATCA 61.245 55.000 17.00 0.00 0.00 2.92
732 757 2.048597 TCACGTGGCACCGATCAC 60.049 61.111 17.00 0.00 0.00 3.06
734 759 1.958715 CACGTGGCACCGATCACAA 60.959 57.895 12.86 0.00 33.83 3.33
735 760 1.959226 ACGTGGCACCGATCACAAC 60.959 57.895 12.86 0.00 33.83 3.32
737 762 1.666553 GTGGCACCGATCACAACGA 60.667 57.895 6.29 0.00 34.32 3.85
739 764 2.740714 GGCACCGATCACAACGAGC 61.741 63.158 0.00 0.00 0.00 5.03
740 765 2.027073 GCACCGATCACAACGAGCA 61.027 57.895 0.00 0.00 34.08 4.26
741 766 1.781555 CACCGATCACAACGAGCAC 59.218 57.895 0.00 0.00 0.00 4.40
742 767 1.374252 ACCGATCACAACGAGCACC 60.374 57.895 0.00 0.00 0.00 5.01
743 768 2.444624 CCGATCACAACGAGCACCG 61.445 63.158 0.00 0.00 45.44 4.94
744 769 1.443702 CGATCACAACGAGCACCGA 60.444 57.895 5.53 0.00 41.76 4.69
745 770 1.674611 CGATCACAACGAGCACCGAC 61.675 60.000 5.53 0.00 41.76 4.79
746 771 1.674611 GATCACAACGAGCACCGACG 61.675 60.000 5.53 0.00 41.76 5.12
748 773 3.908081 ACAACGAGCACCGACGGT 61.908 61.111 15.37 15.37 41.76 4.83
757 782 2.264794 ACCGACGGTGCTGATTCC 59.735 61.111 21.02 0.00 32.98 3.01
763 788 2.825836 GGTGCTGATTCCGGCCTG 60.826 66.667 0.00 0.00 44.00 4.85
764 789 3.512516 GTGCTGATTCCGGCCTGC 61.513 66.667 0.00 4.92 44.00 4.85
765 790 4.032452 TGCTGATTCCGGCCTGCA 62.032 61.111 15.03 15.03 44.00 4.41
766 791 3.207669 GCTGATTCCGGCCTGCAG 61.208 66.667 6.78 6.78 38.74 4.41
767 792 2.515523 CTGATTCCGGCCTGCAGG 60.516 66.667 29.34 29.34 38.53 4.85
768 793 4.113815 TGATTCCGGCCTGCAGGG 62.114 66.667 33.46 17.98 35.18 4.45
770 795 4.431131 ATTCCGGCCTGCAGGGTG 62.431 66.667 33.46 9.60 37.43 4.61
777 802 4.767255 CCTGCAGGGTGCTCGGTC 62.767 72.222 26.14 0.00 45.31 4.79
778 803 4.007644 CTGCAGGGTGCTCGGTCA 62.008 66.667 5.57 0.00 45.31 4.02
779 804 4.314440 TGCAGGGTGCTCGGTCAC 62.314 66.667 0.00 0.27 45.31 3.67
785 810 3.655481 GTGCTCGGTCACCAAAGG 58.345 61.111 0.00 0.00 0.00 3.11
786 811 2.281484 TGCTCGGTCACCAAAGGC 60.281 61.111 0.00 0.00 0.00 4.35
787 812 3.056328 GCTCGGTCACCAAAGGCC 61.056 66.667 0.00 0.00 0.00 5.19
788 813 2.429930 CTCGGTCACCAAAGGCCA 59.570 61.111 5.01 0.00 0.00 5.36
789 814 1.002134 CTCGGTCACCAAAGGCCAT 60.002 57.895 5.01 0.00 0.00 4.40
790 815 0.609131 CTCGGTCACCAAAGGCCATT 60.609 55.000 5.01 0.00 0.00 3.16
792 817 0.678950 CGGTCACCAAAGGCCATTTT 59.321 50.000 5.01 0.00 0.00 1.82
794 819 1.336795 GGTCACCAAAGGCCATTTTCG 60.337 52.381 5.01 0.00 0.00 3.46
795 820 0.316841 TCACCAAAGGCCATTTTCGC 59.683 50.000 5.01 0.00 0.00 4.70
796 821 0.033228 CACCAAAGGCCATTTTCGCA 59.967 50.000 5.01 0.00 0.00 5.10
797 822 0.975887 ACCAAAGGCCATTTTCGCAT 59.024 45.000 5.01 0.00 0.00 4.73
798 823 1.338011 ACCAAAGGCCATTTTCGCATG 60.338 47.619 5.01 0.00 0.00 4.06
799 824 1.067000 CCAAAGGCCATTTTCGCATGA 60.067 47.619 5.01 0.00 0.00 3.07
800 825 2.419021 CCAAAGGCCATTTTCGCATGAT 60.419 45.455 5.01 0.00 0.00 2.45
801 826 2.861935 CAAAGGCCATTTTCGCATGATC 59.138 45.455 5.01 0.00 0.00 2.92
802 827 1.766494 AGGCCATTTTCGCATGATCA 58.234 45.000 5.01 0.00 0.00 2.92
804 829 2.035449 AGGCCATTTTCGCATGATCATG 59.965 45.455 28.04 28.04 41.60 3.07
805 830 2.223876 GGCCATTTTCGCATGATCATGT 60.224 45.455 31.09 12.19 40.80 3.21
807 832 4.499526 GGCCATTTTCGCATGATCATGTTA 60.500 41.667 31.09 19.38 40.80 2.41
808 833 4.442073 GCCATTTTCGCATGATCATGTTAC 59.558 41.667 31.09 17.08 40.80 2.50
810 835 6.513230 GCCATTTTCGCATGATCATGTTACTA 60.513 38.462 31.09 17.43 40.80 1.82
812 837 8.077991 CCATTTTCGCATGATCATGTTACTATT 58.922 33.333 31.09 12.62 40.80 1.73
813 838 9.110617 CATTTTCGCATGATCATGTTACTATTC 57.889 33.333 31.09 14.55 40.80 1.75
815 840 9.541143 TTTTCGCATGATCATGTTACTATTCTA 57.459 29.630 31.09 6.67 40.80 2.10
817 842 8.693542 TCGCATGATCATGTTACTATTCTATG 57.306 34.615 31.09 8.01 40.80 2.23
837 862 9.976776 TTCTATGTTACTATCTCTATAGTGGGG 57.023 37.037 8.04 0.00 46.28 4.96
839 864 9.621629 CTATGTTACTATCTCTATAGTGGGGAG 57.378 40.741 8.04 0.00 46.28 4.30
841 866 8.515927 TGTTACTATCTCTATAGTGGGGAGTA 57.484 38.462 8.04 4.08 46.28 2.59
843 868 9.978336 GTTACTATCTCTATAGTGGGGAGTAAT 57.022 37.037 17.41 3.18 46.28 1.89
850 875 9.922477 TCTCTATAGTGGGGAGTAATATATGTG 57.078 37.037 0.00 0.00 0.00 3.21
851 876 9.702253 CTCTATAGTGGGGAGTAATATATGTGT 57.298 37.037 0.00 0.00 0.00 3.72
852 877 9.475620 TCTATAGTGGGGAGTAATATATGTGTG 57.524 37.037 0.00 0.00 0.00 3.82
853 878 9.475620 CTATAGTGGGGAGTAATATATGTGTGA 57.524 37.037 0.00 0.00 0.00 3.58
854 879 8.917414 ATAGTGGGGAGTAATATATGTGTGAT 57.083 34.615 0.00 0.00 0.00 3.06
856 881 8.736097 AGTGGGGAGTAATATATGTGTGATAA 57.264 34.615 0.00 0.00 0.00 1.75
857 882 8.594550 AGTGGGGAGTAATATATGTGTGATAAC 58.405 37.037 0.00 0.00 0.00 1.89
859 884 9.111519 TGGGGAGTAATATATGTGTGATAACAT 57.888 33.333 0.00 0.00 43.21 2.71
860 885 9.383519 GGGGAGTAATATATGTGTGATAACATG 57.616 37.037 0.17 0.00 40.93 3.21
861 886 8.883731 GGGAGTAATATATGTGTGATAACATGC 58.116 37.037 0.00 0.00 40.93 4.06
870 895 7.628769 ATGTGTGATAACATGCAATACTTCA 57.371 32.000 0.00 0.00 39.32 3.02
871 896 7.628769 TGTGTGATAACATGCAATACTTCAT 57.371 32.000 0.00 0.00 0.00 2.57
872 897 8.054152 TGTGTGATAACATGCAATACTTCATT 57.946 30.769 0.00 0.00 0.00 2.57
873 898 8.522003 TGTGTGATAACATGCAATACTTCATTT 58.478 29.630 0.00 0.00 0.00 2.32
897 922 9.658799 TTTATTATGCTATAGACTCATCTTGCC 57.341 33.333 3.21 0.00 36.29 4.52
898 923 6.670695 TTATGCTATAGACTCATCTTGCCA 57.329 37.500 3.21 0.00 36.29 4.92
899 924 5.758790 ATGCTATAGACTCATCTTGCCAT 57.241 39.130 3.21 0.00 36.29 4.40
900 925 4.891260 TGCTATAGACTCATCTTGCCATG 58.109 43.478 3.21 0.00 36.29 3.66
902 927 5.247792 TGCTATAGACTCATCTTGCCATGAT 59.752 40.000 3.21 0.00 36.29 2.45
903 928 6.438425 TGCTATAGACTCATCTTGCCATGATA 59.562 38.462 3.21 0.00 36.29 2.15
905 930 7.438757 GCTATAGACTCATCTTGCCATGATATG 59.561 40.741 3.21 0.00 36.29 1.78
906 931 5.563876 AGACTCATCTTGCCATGATATGT 57.436 39.130 0.00 0.00 32.21 2.29
907 932 5.306394 AGACTCATCTTGCCATGATATGTG 58.694 41.667 0.00 0.00 32.21 3.21
908 933 5.045012 ACTCATCTTGCCATGATATGTGT 57.955 39.130 0.00 0.00 32.21 3.72
909 934 4.820173 ACTCATCTTGCCATGATATGTGTG 59.180 41.667 0.00 0.00 32.21 3.82
912 937 5.472137 TCATCTTGCCATGATATGTGTGATG 59.528 40.000 0.00 0.00 0.00 3.07
914 939 5.195185 TCTTGCCATGATATGTGTGATGTT 58.805 37.500 0.00 0.00 0.00 2.71
916 941 6.260714 TCTTGCCATGATATGTGTGATGTTAC 59.739 38.462 0.00 0.00 0.00 2.50
917 942 5.683681 TGCCATGATATGTGTGATGTTACT 58.316 37.500 0.00 0.00 0.00 2.24
920 945 6.429078 GCCATGATATGTGTGATGTTACTCAT 59.571 38.462 0.00 0.00 38.11 2.90
921 946 7.603784 GCCATGATATGTGTGATGTTACTCATA 59.396 37.037 0.00 0.00 39.73 2.15
922 947 8.929746 CCATGATATGTGTGATGTTACTCATAC 58.070 37.037 0.00 5.35 38.84 2.39
923 948 9.702494 CATGATATGTGTGATGTTACTCATACT 57.298 33.333 10.75 3.32 38.84 2.12
929 954 8.803397 TGTGTGATGTTACTCATACTAGTAGT 57.197 34.615 8.85 8.14 37.92 2.73
930 955 8.674607 TGTGTGATGTTACTCATACTAGTAGTG 58.325 37.037 13.29 7.25 37.92 2.74
931 956 8.890718 GTGTGATGTTACTCATACTAGTAGTGA 58.109 37.037 13.29 10.73 36.83 3.41
932 957 8.890718 TGTGATGTTACTCATACTAGTAGTGAC 58.109 37.037 13.29 9.94 36.83 3.67
933 958 9.111613 GTGATGTTACTCATACTAGTAGTGACT 57.888 37.037 13.29 0.00 36.97 3.41
947 972 6.380095 AGTAGTGACTAGCTATGTTACTGC 57.620 41.667 20.75 19.68 37.08 4.40
948 973 5.886474 AGTAGTGACTAGCTATGTTACTGCA 59.114 40.000 23.42 10.26 38.43 4.41
949 974 5.860941 AGTGACTAGCTATGTTACTGCAT 57.139 39.130 15.19 0.00 33.86 3.96
951 976 5.127845 AGTGACTAGCTATGTTACTGCATGT 59.872 40.000 15.19 0.00 33.86 3.21
952 977 5.460419 GTGACTAGCTATGTTACTGCATGTC 59.540 44.000 0.00 0.00 34.45 3.06
953 978 5.360999 TGACTAGCTATGTTACTGCATGTCT 59.639 40.000 0.00 0.00 34.71 3.41
954 979 5.837437 ACTAGCTATGTTACTGCATGTCTC 58.163 41.667 0.00 0.00 0.00 3.36
955 980 5.596361 ACTAGCTATGTTACTGCATGTCTCT 59.404 40.000 0.00 0.00 0.00 3.10
956 981 5.350504 AGCTATGTTACTGCATGTCTCTT 57.649 39.130 0.00 0.00 0.00 2.85
957 982 5.738909 AGCTATGTTACTGCATGTCTCTTT 58.261 37.500 0.00 0.00 0.00 2.52
958 983 6.176183 AGCTATGTTACTGCATGTCTCTTTT 58.824 36.000 0.00 0.00 0.00 2.27
959 984 6.656693 AGCTATGTTACTGCATGTCTCTTTTT 59.343 34.615 0.00 0.00 0.00 1.94
960 985 6.963805 GCTATGTTACTGCATGTCTCTTTTTC 59.036 38.462 0.00 0.00 0.00 2.29
961 986 7.148340 GCTATGTTACTGCATGTCTCTTTTTCT 60.148 37.037 0.00 0.00 0.00 2.52
962 987 6.942532 TGTTACTGCATGTCTCTTTTTCTT 57.057 33.333 0.00 0.00 0.00 2.52
963 988 6.959361 TGTTACTGCATGTCTCTTTTTCTTC 58.041 36.000 0.00 0.00 0.00 2.87
964 989 6.542005 TGTTACTGCATGTCTCTTTTTCTTCA 59.458 34.615 0.00 0.00 0.00 3.02
966 991 6.645790 ACTGCATGTCTCTTTTTCTTCATT 57.354 33.333 0.00 0.00 0.00 2.57
967 992 7.047460 ACTGCATGTCTCTTTTTCTTCATTT 57.953 32.000 0.00 0.00 0.00 2.32
968 993 8.169977 ACTGCATGTCTCTTTTTCTTCATTTA 57.830 30.769 0.00 0.00 0.00 1.40
969 994 8.800332 ACTGCATGTCTCTTTTTCTTCATTTAT 58.200 29.630 0.00 0.00 0.00 1.40
970 995 9.635520 CTGCATGTCTCTTTTTCTTCATTTATT 57.364 29.630 0.00 0.00 0.00 1.40
1034 1059 9.251440 TGTTACTATCTATGTTACTTCCACTGT 57.749 33.333 0.00 0.00 0.00 3.55
1035 1060 9.517609 GTTACTATCTATGTTACTTCCACTGTG 57.482 37.037 0.00 0.00 0.00 3.66
1036 1061 7.956328 ACTATCTATGTTACTTCCACTGTGA 57.044 36.000 9.86 0.00 0.00 3.58
1038 1063 6.859112 ATCTATGTTACTTCCACTGTGAGT 57.141 37.500 9.86 8.31 0.00 3.41
1039 1064 7.956328 ATCTATGTTACTTCCACTGTGAGTA 57.044 36.000 9.86 7.28 0.00 2.59
1040 1065 7.392494 TCTATGTTACTTCCACTGTGAGTAG 57.608 40.000 9.86 5.87 0.00 2.57
1041 1066 6.946583 TCTATGTTACTTCCACTGTGAGTAGT 59.053 38.462 9.86 11.18 0.00 2.73
1042 1067 5.449107 TGTTACTTCCACTGTGAGTAGTC 57.551 43.478 9.86 7.81 0.00 2.59
1045 1070 2.814919 ACTTCCACTGTGAGTAGTCTCG 59.185 50.000 9.86 0.00 43.09 4.04
1070 1447 0.935898 GCAGACGGCAATGAGATCTG 59.064 55.000 0.00 0.00 43.97 2.90
1407 2160 0.796312 TCGATCTGCCGTTCTTTTGC 59.204 50.000 0.00 0.00 0.00 3.68
1516 2269 6.078456 AGACAATACTGGGAATGGATCAAA 57.922 37.500 0.00 0.00 0.00 2.69
1532 2285 3.319137 TCAAACTCCGTTCTCATGAGG 57.681 47.619 22.42 7.64 0.00 3.86
1559 2312 0.584876 AAACAACAGGTTCGCGCTAC 59.415 50.000 5.56 3.05 39.29 3.58
1568 2321 1.267882 GGTTCGCGCTACTTAATTGGC 60.268 52.381 5.56 0.00 0.00 4.52
1598 2366 5.692613 ATTTAGTTATCGTCTCTCTCCGG 57.307 43.478 0.00 0.00 0.00 5.14
1947 2741 1.068741 GGAAATCCGTCTGCCTCGTAT 59.931 52.381 0.00 0.00 0.00 3.06
2062 2856 3.112709 GAAGGCTGCGACGGTGAC 61.113 66.667 0.00 0.00 0.00 3.67
2063 2857 3.858868 GAAGGCTGCGACGGTGACA 62.859 63.158 0.00 0.00 0.00 3.58
2189 2984 3.364964 GGTTAAGAACCGTCGTCGTCTAA 60.365 47.826 0.71 0.00 42.62 2.10
2253 3048 7.446013 AGTGAAACATTAACTATCCGTCCAAAA 59.554 33.333 0.00 0.00 41.43 2.44
2254 3049 8.077386 GTGAAACATTAACTATCCGTCCAAAAA 58.923 33.333 0.00 0.00 36.32 1.94
2265 3060 2.219903 CCGTCCAAAAATTTGAAACCGC 59.780 45.455 7.44 0.00 40.55 5.68
2287 3082 3.395639 TCGTTGGTGAAAGTACATGACC 58.604 45.455 0.00 0.00 0.00 4.02
2335 4332 9.534565 TTCTTTATCTATTTTCATCTCGACCAG 57.465 33.333 0.00 0.00 0.00 4.00
2368 4365 5.516090 TCGTATGCAAAGTCAAGGTTTTTC 58.484 37.500 0.00 0.00 0.00 2.29
2463 4472 2.104170 GGGAACACAACCCACAAAAGA 58.896 47.619 0.00 0.00 46.05 2.52
2467 4476 4.998033 GGAACACAACCCACAAAAGAAAAA 59.002 37.500 0.00 0.00 0.00 1.94
2489 4498 9.981114 AAAAATAAAGAAAGAACATCGATGGTT 57.019 25.926 28.09 19.01 0.00 3.67
2507 4516 5.261209 TGGTTGTTCTTCATTTGGTTCAG 57.739 39.130 0.00 0.00 0.00 3.02
2534 4543 6.709643 AGTCGATTCTCAGCGAAATAAATTG 58.290 36.000 0.00 0.00 38.36 2.32
2580 4590 9.914834 TCTATTTTAAGTATTGTATGCAGGGTT 57.085 29.630 0.00 0.00 0.00 4.11
2583 4593 9.651913 ATTTTAAGTATTGTATGCAGGGTTTTG 57.348 29.630 0.00 0.00 0.00 2.44
2584 4594 5.659440 AAGTATTGTATGCAGGGTTTTGG 57.341 39.130 0.00 0.00 0.00 3.28
2585 4595 4.672899 AGTATTGTATGCAGGGTTTTGGT 58.327 39.130 0.00 0.00 0.00 3.67
2586 4596 5.083821 AGTATTGTATGCAGGGTTTTGGTT 58.916 37.500 0.00 0.00 0.00 3.67
2587 4597 6.249951 AGTATTGTATGCAGGGTTTTGGTTA 58.750 36.000 0.00 0.00 0.00 2.85
2588 4598 4.857509 TTGTATGCAGGGTTTTGGTTAC 57.142 40.909 0.00 0.00 0.00 2.50
2589 4599 3.158676 TGTATGCAGGGTTTTGGTTACC 58.841 45.455 0.00 0.00 34.82 2.85
2590 4600 1.253100 ATGCAGGGTTTTGGTTACCG 58.747 50.000 0.00 0.00 36.49 4.02
2591 4601 1.287815 GCAGGGTTTTGGTTACCGC 59.712 57.895 0.00 0.00 36.49 5.68
2592 4602 1.176619 GCAGGGTTTTGGTTACCGCT 61.177 55.000 0.00 0.00 36.49 5.52
2593 4603 0.879090 CAGGGTTTTGGTTACCGCTC 59.121 55.000 0.00 0.00 36.49 5.03
2594 4604 0.604511 AGGGTTTTGGTTACCGCTCG 60.605 55.000 0.00 0.00 36.49 5.03
2595 4605 0.603439 GGGTTTTGGTTACCGCTCGA 60.603 55.000 0.00 0.00 36.49 4.04
2596 4606 1.228533 GGTTTTGGTTACCGCTCGAA 58.771 50.000 0.00 0.00 0.00 3.71
2597 4607 1.603326 GGTTTTGGTTACCGCTCGAAA 59.397 47.619 0.00 0.00 0.00 3.46
2598 4608 2.227149 GGTTTTGGTTACCGCTCGAAAT 59.773 45.455 0.00 0.00 0.00 2.17
2599 4609 3.304861 GGTTTTGGTTACCGCTCGAAATT 60.305 43.478 0.00 0.00 0.00 1.82
2600 4610 4.292599 GTTTTGGTTACCGCTCGAAATTT 58.707 39.130 0.00 0.00 0.00 1.82
2601 4611 3.817148 TTGGTTACCGCTCGAAATTTC 57.183 42.857 8.20 8.20 0.00 2.17
2619 4629 8.891367 GAAATTTCGAGATTTACCAAGGTTAC 57.109 34.615 13.37 0.00 29.75 2.50
2620 4630 6.997239 ATTTCGAGATTTACCAAGGTTACC 57.003 37.500 0.00 0.00 0.00 2.85
2621 4631 4.114058 TCGAGATTTACCAAGGTTACCG 57.886 45.455 0.00 0.00 0.00 4.02
2622 4632 2.606272 CGAGATTTACCAAGGTTACCGC 59.394 50.000 0.00 0.00 0.00 5.68
2623 4633 3.602483 GAGATTTACCAAGGTTACCGCA 58.398 45.455 0.00 0.00 0.00 5.69
2624 4634 4.196971 GAGATTTACCAAGGTTACCGCAT 58.803 43.478 0.00 0.00 0.00 4.73
2625 4635 5.362105 AGATTTACCAAGGTTACCGCATA 57.638 39.130 0.00 0.00 0.00 3.14
2626 4636 5.937111 AGATTTACCAAGGTTACCGCATAT 58.063 37.500 0.00 0.00 0.00 1.78
2627 4637 6.362248 AGATTTACCAAGGTTACCGCATATT 58.638 36.000 0.00 0.00 0.00 1.28
2628 4638 6.831868 AGATTTACCAAGGTTACCGCATATTT 59.168 34.615 0.00 0.00 0.00 1.40
2629 4639 6.837471 TTTACCAAGGTTACCGCATATTTT 57.163 33.333 0.00 0.00 0.00 1.82
2630 4640 4.712122 ACCAAGGTTACCGCATATTTTG 57.288 40.909 0.00 0.00 0.00 2.44
2655 4665 2.194868 CCCCCTCGGTAAATGGGC 59.805 66.667 0.00 0.00 39.61 5.36
2656 4666 2.685534 CCCCCTCGGTAAATGGGCA 61.686 63.158 0.00 0.00 39.61 5.36
2657 4667 1.536676 CCCCTCGGTAAATGGGCAT 59.463 57.895 0.00 0.00 39.61 4.40
2658 4668 0.106217 CCCCTCGGTAAATGGGCATT 60.106 55.000 0.00 0.00 39.61 3.56
2659 4669 1.687996 CCCCTCGGTAAATGGGCATTT 60.688 52.381 0.00 0.00 42.95 2.32
2660 4670 1.681264 CCCTCGGTAAATGGGCATTTC 59.319 52.381 0.00 0.00 40.99 2.17
2661 4671 1.333619 CCTCGGTAAATGGGCATTTCG 59.666 52.381 0.00 0.00 40.99 3.46
2662 4672 2.285083 CTCGGTAAATGGGCATTTCGA 58.715 47.619 0.00 0.00 40.99 3.71
2663 4673 2.285083 TCGGTAAATGGGCATTTCGAG 58.715 47.619 0.00 0.00 40.99 4.04
2664 4674 1.268539 CGGTAAATGGGCATTTCGAGC 60.269 52.381 0.00 0.00 40.99 5.03
2665 4675 1.748493 GGTAAATGGGCATTTCGAGCA 59.252 47.619 0.00 0.00 40.99 4.26
2666 4676 2.165437 GGTAAATGGGCATTTCGAGCAA 59.835 45.455 0.00 0.00 40.99 3.91
2667 4677 3.367910 GGTAAATGGGCATTTCGAGCAAA 60.368 43.478 0.00 0.00 40.99 3.68
2668 4678 3.399440 AAATGGGCATTTCGAGCAAAA 57.601 38.095 0.00 0.00 36.34 2.44
2669 4679 3.399440 AATGGGCATTTCGAGCAAAAA 57.601 38.095 0.00 0.00 0.00 1.94
2670 4680 3.615224 ATGGGCATTTCGAGCAAAAAT 57.385 38.095 0.00 0.00 0.00 1.82
2671 4681 3.399440 TGGGCATTTCGAGCAAAAATT 57.601 38.095 0.00 0.00 0.00 1.82
2672 4682 3.324993 TGGGCATTTCGAGCAAAAATTC 58.675 40.909 0.00 0.00 0.00 2.17
2673 4683 3.244009 TGGGCATTTCGAGCAAAAATTCA 60.244 39.130 0.00 0.00 0.00 2.57
2674 4684 3.745458 GGGCATTTCGAGCAAAAATTCAA 59.255 39.130 0.00 0.00 0.00 2.69
2675 4685 4.213059 GGGCATTTCGAGCAAAAATTCAAA 59.787 37.500 0.00 0.00 0.00 2.69
2676 4686 5.106594 GGGCATTTCGAGCAAAAATTCAAAT 60.107 36.000 0.00 0.00 0.00 2.32
2677 4687 6.372981 GGCATTTCGAGCAAAAATTCAAATT 58.627 32.000 0.00 0.00 0.00 1.82
2678 4688 6.857451 GGCATTTCGAGCAAAAATTCAAATTT 59.143 30.769 0.00 0.00 40.15 1.82
2708 4718 5.437289 TTTTGAATTCAGACGCTCAATGT 57.563 34.783 8.41 0.00 0.00 2.71
2709 4719 6.552859 TTTTGAATTCAGACGCTCAATGTA 57.447 33.333 8.41 0.00 0.00 2.29
2710 4720 6.741992 TTTGAATTCAGACGCTCAATGTAT 57.258 33.333 8.41 0.00 0.00 2.29
2711 4721 7.841915 TTTGAATTCAGACGCTCAATGTATA 57.158 32.000 8.41 0.00 0.00 1.47
2712 4722 7.468922 TTGAATTCAGACGCTCAATGTATAG 57.531 36.000 8.41 0.00 0.00 1.31
2713 4723 6.573434 TGAATTCAGACGCTCAATGTATAGT 58.427 36.000 3.38 0.00 0.00 2.12
2714 4724 6.697455 TGAATTCAGACGCTCAATGTATAGTC 59.303 38.462 3.38 0.00 0.00 2.59
2715 4725 5.576447 TTCAGACGCTCAATGTATAGTCA 57.424 39.130 0.00 0.00 0.00 3.41
2716 4726 5.774498 TCAGACGCTCAATGTATAGTCAT 57.226 39.130 0.00 0.00 0.00 3.06
2717 4727 5.523369 TCAGACGCTCAATGTATAGTCATG 58.477 41.667 0.00 0.00 0.00 3.07
2718 4728 5.067805 TCAGACGCTCAATGTATAGTCATGT 59.932 40.000 0.00 0.00 0.00 3.21
2719 4729 6.262273 TCAGACGCTCAATGTATAGTCATGTA 59.738 38.462 0.00 0.00 0.00 2.29
2720 4730 7.040409 TCAGACGCTCAATGTATAGTCATGTAT 60.040 37.037 0.00 0.00 0.00 2.29
2721 4731 7.061557 CAGACGCTCAATGTATAGTCATGTATG 59.938 40.741 0.00 0.00 0.00 2.39
2722 4732 6.159293 ACGCTCAATGTATAGTCATGTATGG 58.841 40.000 0.00 0.00 0.00 2.74
2723 4733 6.159293 CGCTCAATGTATAGTCATGTATGGT 58.841 40.000 0.00 0.00 0.00 3.55
2724 4734 7.039993 ACGCTCAATGTATAGTCATGTATGGTA 60.040 37.037 0.00 0.00 0.00 3.25
2725 4735 7.486232 CGCTCAATGTATAGTCATGTATGGTAG 59.514 40.741 0.00 0.00 0.00 3.18
2726 4736 7.276658 GCTCAATGTATAGTCATGTATGGTAGC 59.723 40.741 0.00 0.00 0.00 3.58
2727 4737 8.189119 TCAATGTATAGTCATGTATGGTAGCA 57.811 34.615 0.00 0.00 0.00 3.49
2728 4738 8.088365 TCAATGTATAGTCATGTATGGTAGCAC 58.912 37.037 0.00 0.00 0.00 4.40
2729 4739 7.782897 ATGTATAGTCATGTATGGTAGCACT 57.217 36.000 0.00 0.00 0.00 4.40
2730 4740 7.597288 TGTATAGTCATGTATGGTAGCACTT 57.403 36.000 0.00 0.00 0.00 3.16
2731 4741 7.433680 TGTATAGTCATGTATGGTAGCACTTG 58.566 38.462 0.00 0.00 0.00 3.16
2732 4742 6.731292 ATAGTCATGTATGGTAGCACTTGA 57.269 37.500 0.00 0.00 0.00 3.02
2733 4743 4.759782 AGTCATGTATGGTAGCACTTGAC 58.240 43.478 17.02 17.02 44.22 3.18
2734 4744 4.222810 AGTCATGTATGGTAGCACTTGACA 59.777 41.667 22.38 14.58 45.33 3.58
2735 4745 4.568359 GTCATGTATGGTAGCACTTGACAG 59.432 45.833 18.61 8.00 43.74 3.51
2736 4746 2.972625 TGTATGGTAGCACTTGACAGC 58.027 47.619 0.00 0.00 0.00 4.40
2737 4747 2.301583 TGTATGGTAGCACTTGACAGCA 59.698 45.455 0.00 0.00 0.00 4.41
2738 4748 1.813513 ATGGTAGCACTTGACAGCAC 58.186 50.000 0.00 0.00 0.00 4.40
2739 4749 0.599991 TGGTAGCACTTGACAGCACG 60.600 55.000 0.00 0.00 0.00 5.34
2740 4750 1.493311 GTAGCACTTGACAGCACGC 59.507 57.895 0.00 0.00 0.00 5.34
2741 4751 0.946221 GTAGCACTTGACAGCACGCT 60.946 55.000 0.00 0.00 0.00 5.07
2742 4752 0.249868 TAGCACTTGACAGCACGCTT 60.250 50.000 0.00 0.00 0.00 4.68
2743 4753 1.369689 GCACTTGACAGCACGCTTG 60.370 57.895 0.00 0.00 0.00 4.01
2744 4754 2.016961 CACTTGACAGCACGCTTGT 58.983 52.632 0.00 0.00 0.00 3.16
2745 4755 1.217001 CACTTGACAGCACGCTTGTA 58.783 50.000 0.00 0.00 0.00 2.41
2746 4756 1.193203 CACTTGACAGCACGCTTGTAG 59.807 52.381 0.00 0.00 0.00 2.74
2747 4757 1.068588 ACTTGACAGCACGCTTGTAGA 59.931 47.619 0.00 0.00 0.00 2.59
2748 4758 1.457303 CTTGACAGCACGCTTGTAGAC 59.543 52.381 0.00 0.00 0.00 2.59
2749 4759 0.387565 TGACAGCACGCTTGTAGACA 59.612 50.000 0.00 0.00 0.00 3.41
2750 4760 1.202475 TGACAGCACGCTTGTAGACAA 60.202 47.619 0.00 0.00 0.00 3.18
2751 4761 1.192534 GACAGCACGCTTGTAGACAAC 59.807 52.381 0.00 0.00 0.00 3.32
2752 4762 0.161658 CAGCACGCTTGTAGACAACG 59.838 55.000 12.59 12.59 36.86 4.10
2753 4763 0.249322 AGCACGCTTGTAGACAACGT 60.249 50.000 13.51 13.51 40.95 3.99
2754 4764 0.580104 GCACGCTTGTAGACAACGTT 59.420 50.000 15.47 0.00 39.56 3.99
2755 4765 1.004292 GCACGCTTGTAGACAACGTTT 60.004 47.619 15.47 0.00 39.56 3.60
2756 4766 2.887733 CACGCTTGTAGACAACGTTTC 58.112 47.619 15.47 0.00 39.56 2.78
2757 4767 1.519758 ACGCTTGTAGACAACGTTTCG 59.480 47.619 0.00 0.00 39.00 3.46
2758 4768 1.717429 CGCTTGTAGACAACGTTTCGC 60.717 52.381 0.00 0.00 0.00 4.70
2759 4769 1.525619 GCTTGTAGACAACGTTTCGCT 59.474 47.619 0.00 0.00 0.00 4.93
2760 4770 2.659291 GCTTGTAGACAACGTTTCGCTG 60.659 50.000 0.00 0.00 0.00 5.18
2761 4771 2.495409 TGTAGACAACGTTTCGCTGA 57.505 45.000 0.00 0.00 0.00 4.26
2762 4772 2.390938 TGTAGACAACGTTTCGCTGAG 58.609 47.619 0.00 0.00 0.00 3.35
2763 4773 1.124477 GTAGACAACGTTTCGCTGAGC 59.876 52.381 0.00 0.00 0.00 4.26
2764 4774 0.249489 AGACAACGTTTCGCTGAGCT 60.249 50.000 1.78 0.00 0.00 4.09
2765 4775 1.000607 AGACAACGTTTCGCTGAGCTA 60.001 47.619 1.78 0.00 0.00 3.32
2766 4776 1.387084 GACAACGTTTCGCTGAGCTAG 59.613 52.381 1.78 0.00 0.00 3.42
2767 4777 1.269621 ACAACGTTTCGCTGAGCTAGT 60.270 47.619 1.78 0.00 0.00 2.57
2768 4778 2.030540 ACAACGTTTCGCTGAGCTAGTA 60.031 45.455 1.78 0.00 0.00 1.82
2769 4779 2.546195 ACGTTTCGCTGAGCTAGTAG 57.454 50.000 1.78 0.00 0.00 2.57
2770 4780 1.192793 CGTTTCGCTGAGCTAGTAGC 58.807 55.000 14.62 14.62 42.84 3.58
2832 4842 4.496183 CGAACGACTGCTATTCTTACTCAC 59.504 45.833 0.00 0.00 0.00 3.51
2835 4845 5.344066 ACGACTGCTATTCTTACTCACATG 58.656 41.667 0.00 0.00 0.00 3.21
2880 4893 3.008835 TGCATGAGGAATGAAGGAAGG 57.991 47.619 0.00 0.00 38.72 3.46
2892 4905 5.707066 ATGAAGGAAGGAAGCAGTTCTAT 57.293 39.130 0.00 0.00 32.72 1.98
2940 8482 3.000724 GCATGTGAGACGAAATAGCTGAC 59.999 47.826 0.00 0.00 0.00 3.51
2941 8483 3.934457 TGTGAGACGAAATAGCTGACA 57.066 42.857 0.00 0.00 0.00 3.58
2945 8487 4.502282 GTGAGACGAAATAGCTGACATCAG 59.498 45.833 4.43 4.43 46.40 2.90
2968 8512 7.383029 TCAGCAATGTTCATTCAAATTCAGAAC 59.617 33.333 0.00 0.00 39.11 3.01
3004 8549 4.575885 AGCTTAAACCGTTGCTCAGATTA 58.424 39.130 0.00 0.00 0.00 1.75
3008 8553 6.087687 GCTTAAACCGTTGCTCAGATTAAAAC 59.912 38.462 0.00 0.00 0.00 2.43
3019 8564 8.406172 TGCTCAGATTAAAACTTTGTTTTCAC 57.594 30.769 11.05 5.62 0.00 3.18
3035 8580 4.838665 TTTCACGTAAAAGTTTCGTCGT 57.161 36.364 0.00 3.75 35.62 4.34
3052 8597 4.295133 GTCGTGACGAGATCTTCAAAAC 57.705 45.455 8.41 0.00 36.23 2.43
3076 8621 4.199310 AGATCCCATGTTGGTATGTTTCG 58.801 43.478 0.00 0.00 35.17 3.46
3081 8626 4.472286 CCATGTTGGTATGTTTCGACAAC 58.528 43.478 6.01 6.01 41.18 3.32
3082 8627 4.215399 CCATGTTGGTATGTTTCGACAACT 59.785 41.667 12.28 2.82 41.32 3.16
3112 8657 5.821516 TTTCACGTCAAAAGTTACCACAT 57.178 34.783 0.00 0.00 0.00 3.21
3144 8689 7.953158 ACATAACATATCATGTCTGCACTAC 57.047 36.000 0.00 0.00 44.07 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
714 739 2.094659 GTGATCGGTGCCACGTGAG 61.095 63.158 19.30 8.47 34.94 3.51
715 740 2.048597 GTGATCGGTGCCACGTGA 60.049 61.111 19.30 0.00 34.94 4.35
716 741 1.958715 TTGTGATCGGTGCCACGTG 60.959 57.895 9.08 9.08 36.15 4.49
718 743 2.860293 GTTGTGATCGGTGCCACG 59.140 61.111 0.00 0.00 36.15 4.94
719 744 1.626654 CTCGTTGTGATCGGTGCCAC 61.627 60.000 0.00 0.00 0.00 5.01
720 745 1.374125 CTCGTTGTGATCGGTGCCA 60.374 57.895 0.00 0.00 0.00 4.92
721 746 2.740714 GCTCGTTGTGATCGGTGCC 61.741 63.158 0.00 0.00 0.00 5.01
722 747 2.027073 TGCTCGTTGTGATCGGTGC 61.027 57.895 0.00 0.00 0.00 5.01
723 748 1.626654 GGTGCTCGTTGTGATCGGTG 61.627 60.000 0.00 0.00 0.00 4.94
725 750 2.444624 CGGTGCTCGTTGTGATCGG 61.445 63.158 0.00 0.00 0.00 4.18
727 752 1.674611 CGTCGGTGCTCGTTGTGATC 61.675 60.000 0.00 0.00 40.32 2.92
728 753 1.733041 CGTCGGTGCTCGTTGTGAT 60.733 57.895 0.54 0.00 40.32 3.06
729 754 2.354188 CGTCGGTGCTCGTTGTGA 60.354 61.111 0.54 0.00 40.32 3.58
730 755 3.403057 CCGTCGGTGCTCGTTGTG 61.403 66.667 2.08 0.00 40.32 3.33
731 756 3.908081 ACCGTCGGTGCTCGTTGT 61.908 61.111 18.08 0.00 40.32 3.32
740 765 2.264794 GGAATCAGCACCGTCGGT 59.735 61.111 12.23 12.23 35.62 4.69
741 766 2.885644 CGGAATCAGCACCGTCGG 60.886 66.667 10.48 10.48 43.53 4.79
742 767 2.885644 CCGGAATCAGCACCGTCG 60.886 66.667 0.00 0.00 46.53 5.12
743 768 3.195698 GCCGGAATCAGCACCGTC 61.196 66.667 5.05 0.00 46.53 4.79
744 769 4.778143 GGCCGGAATCAGCACCGT 62.778 66.667 5.05 0.00 46.53 4.83
746 771 2.825836 CAGGCCGGAATCAGCACC 60.826 66.667 5.05 0.00 0.00 5.01
748 773 3.982316 CTGCAGGCCGGAATCAGCA 62.982 63.158 5.05 7.72 0.00 4.41
749 774 3.207669 CTGCAGGCCGGAATCAGC 61.208 66.667 5.05 2.68 0.00 4.26
750 775 2.515523 CCTGCAGGCCGGAATCAG 60.516 66.667 22.33 4.46 0.00 2.90
751 776 4.113815 CCCTGCAGGCCGGAATCA 62.114 66.667 28.39 0.00 0.00 2.57
753 778 4.431131 CACCCTGCAGGCCGGAAT 62.431 66.667 28.39 4.66 40.58 3.01
768 793 2.617274 GCCTTTGGTGACCGAGCAC 61.617 63.158 0.00 0.00 38.05 4.40
770 795 3.056328 GGCCTTTGGTGACCGAGC 61.056 66.667 0.00 0.00 0.00 5.03
773 798 0.678950 AAAATGGCCTTTGGTGACCG 59.321 50.000 3.32 0.00 0.00 4.79
774 799 1.336795 CGAAAATGGCCTTTGGTGACC 60.337 52.381 3.32 0.00 0.00 4.02
775 800 1.934849 GCGAAAATGGCCTTTGGTGAC 60.935 52.381 3.32 0.00 0.00 3.67
776 801 0.316841 GCGAAAATGGCCTTTGGTGA 59.683 50.000 3.32 0.00 0.00 4.02
777 802 0.033228 TGCGAAAATGGCCTTTGGTG 59.967 50.000 3.32 0.00 0.00 4.17
778 803 0.975887 ATGCGAAAATGGCCTTTGGT 59.024 45.000 3.32 0.00 0.00 3.67
779 804 1.067000 TCATGCGAAAATGGCCTTTGG 60.067 47.619 3.32 0.00 0.00 3.28
780 805 2.367030 TCATGCGAAAATGGCCTTTG 57.633 45.000 3.32 0.00 0.00 2.77
781 806 2.496871 TGATCATGCGAAAATGGCCTTT 59.503 40.909 3.32 0.00 0.00 3.11
782 807 2.101783 TGATCATGCGAAAATGGCCTT 58.898 42.857 3.32 0.00 0.00 4.35
783 808 1.766494 TGATCATGCGAAAATGGCCT 58.234 45.000 3.32 0.00 0.00 5.19
784 809 2.223876 ACATGATCATGCGAAAATGGCC 60.224 45.455 31.17 0.00 42.39 5.36
785 810 3.088194 ACATGATCATGCGAAAATGGC 57.912 42.857 31.17 0.00 42.39 4.40
786 811 5.824429 AGTAACATGATCATGCGAAAATGG 58.176 37.500 31.17 8.74 42.39 3.16
787 812 9.110617 GAATAGTAACATGATCATGCGAAAATG 57.889 33.333 31.17 10.98 42.39 2.32
788 813 9.060347 AGAATAGTAACATGATCATGCGAAAAT 57.940 29.630 31.17 18.20 42.39 1.82
789 814 8.437360 AGAATAGTAACATGATCATGCGAAAA 57.563 30.769 31.17 16.91 42.39 2.29
790 815 9.710900 ATAGAATAGTAACATGATCATGCGAAA 57.289 29.630 31.17 15.95 42.39 3.46
792 817 8.306761 ACATAGAATAGTAACATGATCATGCGA 58.693 33.333 31.17 18.65 42.39 5.10
812 837 9.347777 TCCCCACTATAGAGATAGTAACATAGA 57.652 37.037 6.78 0.00 45.42 1.98
813 838 9.621629 CTCCCCACTATAGAGATAGTAACATAG 57.378 40.741 6.78 0.00 45.42 2.23
815 840 8.002431 ACTCCCCACTATAGAGATAGTAACAT 57.998 38.462 6.78 0.00 45.42 2.71
817 842 9.978336 ATTACTCCCCACTATAGAGATAGTAAC 57.022 37.037 6.78 0.00 45.42 2.50
824 849 9.922477 CACATATATTACTCCCCACTATAGAGA 57.078 37.037 6.78 0.00 0.00 3.10
825 850 9.702253 ACACATATATTACTCCCCACTATAGAG 57.298 37.037 6.78 0.00 0.00 2.43
826 851 9.475620 CACACATATATTACTCCCCACTATAGA 57.524 37.037 6.78 0.00 0.00 1.98
827 852 9.475620 TCACACATATATTACTCCCCACTATAG 57.524 37.037 0.00 0.00 0.00 1.31
829 854 8.917414 ATCACACATATATTACTCCCCACTAT 57.083 34.615 0.00 0.00 0.00 2.12
830 855 9.831682 TTATCACACATATATTACTCCCCACTA 57.168 33.333 0.00 0.00 0.00 2.74
831 856 8.594550 GTTATCACACATATATTACTCCCCACT 58.405 37.037 0.00 0.00 0.00 4.00
832 857 8.372459 TGTTATCACACATATATTACTCCCCAC 58.628 37.037 0.00 0.00 0.00 4.61
835 860 8.883731 GCATGTTATCACACATATATTACTCCC 58.116 37.037 0.00 0.00 35.51 4.30
836 861 9.435688 TGCATGTTATCACACATATATTACTCC 57.564 33.333 0.00 0.00 35.51 3.85
844 869 9.341078 TGAAGTATTGCATGTTATCACACATAT 57.659 29.630 0.00 0.00 35.51 1.78
846 871 7.628769 TGAAGTATTGCATGTTATCACACAT 57.371 32.000 0.00 0.00 37.93 3.21
847 872 7.628769 ATGAAGTATTGCATGTTATCACACA 57.371 32.000 0.00 0.00 35.03 3.72
848 873 8.915871 AAATGAAGTATTGCATGTTATCACAC 57.084 30.769 0.00 0.00 35.03 3.82
871 896 9.658799 GGCAAGATGAGTCTATAGCATAATAAA 57.341 33.333 0.00 0.00 33.30 1.40
872 897 8.815912 TGGCAAGATGAGTCTATAGCATAATAA 58.184 33.333 0.00 0.00 33.30 1.40
873 898 8.366359 TGGCAAGATGAGTCTATAGCATAATA 57.634 34.615 0.00 0.00 33.30 0.98
874 899 7.250032 TGGCAAGATGAGTCTATAGCATAAT 57.750 36.000 0.00 0.00 33.30 1.28
876 901 6.438425 TCATGGCAAGATGAGTCTATAGCATA 59.562 38.462 0.00 0.00 33.30 3.14
877 902 5.247792 TCATGGCAAGATGAGTCTATAGCAT 59.752 40.000 0.00 0.00 33.30 3.79
878 903 4.590222 TCATGGCAAGATGAGTCTATAGCA 59.410 41.667 0.00 0.00 33.30 3.49
879 904 5.144692 TCATGGCAAGATGAGTCTATAGC 57.855 43.478 0.00 0.00 33.30 2.97
880 905 8.476447 ACATATCATGGCAAGATGAGTCTATAG 58.524 37.037 15.03 0.00 35.81 1.31
882 907 7.104290 CACATATCATGGCAAGATGAGTCTAT 58.896 38.462 15.03 0.00 35.81 1.98
884 909 5.163227 ACACATATCATGGCAAGATGAGTCT 60.163 40.000 15.03 0.00 35.81 3.24
886 911 4.820173 CACACATATCATGGCAAGATGAGT 59.180 41.667 15.03 10.09 35.81 3.41
887 912 5.061179 TCACACATATCATGGCAAGATGAG 58.939 41.667 15.03 9.51 35.81 2.90
891 916 4.784177 ACATCACACATATCATGGCAAGA 58.216 39.130 0.00 0.00 33.60 3.02
893 918 6.121590 AGTAACATCACACATATCATGGCAA 58.878 36.000 0.00 0.00 33.60 4.52
894 919 5.683681 AGTAACATCACACATATCATGGCA 58.316 37.500 0.00 0.00 33.60 4.92
895 920 5.759763 TGAGTAACATCACACATATCATGGC 59.240 40.000 0.00 0.00 33.60 4.40
897 922 9.702494 AGTATGAGTAACATCACACATATCATG 57.298 33.333 0.00 0.00 40.07 3.07
903 928 9.409918 ACTACTAGTATGAGTAACATCACACAT 57.590 33.333 2.33 0.00 40.07 3.21
905 930 8.890718 TCACTACTAGTATGAGTAACATCACAC 58.109 37.037 2.33 0.00 40.07 3.82
906 931 8.890718 GTCACTACTAGTATGAGTAACATCACA 58.109 37.037 2.33 0.00 40.07 3.58
907 932 9.111613 AGTCACTACTAGTATGAGTAACATCAC 57.888 37.037 15.37 4.96 35.90 3.06
923 948 7.052248 TGCAGTAACATAGCTAGTCACTACTA 58.948 38.462 0.00 0.00 37.15 1.82
924 949 5.886474 TGCAGTAACATAGCTAGTCACTACT 59.114 40.000 0.00 0.00 39.91 2.57
925 950 6.132791 TGCAGTAACATAGCTAGTCACTAC 57.867 41.667 0.00 0.00 0.00 2.73
928 953 5.352284 ACATGCAGTAACATAGCTAGTCAC 58.648 41.667 0.00 0.00 0.00 3.67
929 954 5.360999 AGACATGCAGTAACATAGCTAGTCA 59.639 40.000 0.00 0.00 36.19 3.41
930 955 5.837437 AGACATGCAGTAACATAGCTAGTC 58.163 41.667 0.00 0.00 34.97 2.59
931 956 5.596361 AGAGACATGCAGTAACATAGCTAGT 59.404 40.000 0.00 0.00 0.00 2.57
932 957 6.083098 AGAGACATGCAGTAACATAGCTAG 57.917 41.667 0.00 0.00 0.00 3.42
933 958 6.471233 AAGAGACATGCAGTAACATAGCTA 57.529 37.500 0.00 0.00 0.00 3.32
935 960 6.428385 AAAAGAGACATGCAGTAACATAGC 57.572 37.500 0.00 0.00 0.00 2.97
936 961 8.261492 AGAAAAAGAGACATGCAGTAACATAG 57.739 34.615 0.00 0.00 0.00 2.23
937 962 8.621532 AAGAAAAAGAGACATGCAGTAACATA 57.378 30.769 0.00 0.00 0.00 2.29
938 963 7.229306 TGAAGAAAAAGAGACATGCAGTAACAT 59.771 33.333 0.00 0.00 0.00 2.71
939 964 6.542005 TGAAGAAAAAGAGACATGCAGTAACA 59.458 34.615 0.00 0.00 0.00 2.41
941 966 7.750229 ATGAAGAAAAAGAGACATGCAGTAA 57.250 32.000 0.00 0.00 0.00 2.24
942 967 7.750229 AATGAAGAAAAAGAGACATGCAGTA 57.250 32.000 0.00 0.00 0.00 2.74
944 969 9.635520 AATAAATGAAGAAAAAGAGACATGCAG 57.364 29.630 0.00 0.00 0.00 4.41
1008 1033 9.251440 ACAGTGGAAGTAACATAGATAGTAACA 57.749 33.333 0.00 0.00 0.00 2.41
1009 1034 9.517609 CACAGTGGAAGTAACATAGATAGTAAC 57.482 37.037 0.00 0.00 0.00 2.50
1011 1036 9.121658 CTCACAGTGGAAGTAACATAGATAGTA 57.878 37.037 0.00 0.00 0.00 1.82
1012 1037 7.616150 ACTCACAGTGGAAGTAACATAGATAGT 59.384 37.037 0.00 0.00 0.00 2.12
1013 1038 8.001881 ACTCACAGTGGAAGTAACATAGATAG 57.998 38.462 0.00 0.00 0.00 2.08
1014 1039 7.956328 ACTCACAGTGGAAGTAACATAGATA 57.044 36.000 0.00 0.00 0.00 1.98
1015 1040 6.859112 ACTCACAGTGGAAGTAACATAGAT 57.141 37.500 0.00 0.00 0.00 1.98
1016 1041 6.946583 ACTACTCACAGTGGAAGTAACATAGA 59.053 38.462 0.00 0.00 30.59 1.98
1017 1042 7.121463 AGACTACTCACAGTGGAAGTAACATAG 59.879 40.741 0.00 0.00 30.59 2.23
1018 1043 6.946583 AGACTACTCACAGTGGAAGTAACATA 59.053 38.462 0.00 0.00 30.59 2.29
1020 1045 5.138276 AGACTACTCACAGTGGAAGTAACA 58.862 41.667 0.00 0.00 30.59 2.41
1021 1046 5.617308 CGAGACTACTCACAGTGGAAGTAAC 60.617 48.000 0.00 0.65 42.72 2.50
1022 1047 4.454847 CGAGACTACTCACAGTGGAAGTAA 59.545 45.833 0.00 0.00 42.72 2.24
1023 1048 4.001652 CGAGACTACTCACAGTGGAAGTA 58.998 47.826 0.00 1.45 42.72 2.24
1024 1049 2.814919 CGAGACTACTCACAGTGGAAGT 59.185 50.000 0.00 0.17 42.72 3.01
1025 1050 2.814919 ACGAGACTACTCACAGTGGAAG 59.185 50.000 0.00 0.00 42.72 3.46
1026 1051 2.552743 CACGAGACTACTCACAGTGGAA 59.447 50.000 0.00 0.00 42.72 3.53
1027 1052 2.152016 CACGAGACTACTCACAGTGGA 58.848 52.381 0.00 0.00 42.72 4.02
1029 1054 2.152016 TCCACGAGACTACTCACAGTG 58.848 52.381 0.00 0.00 42.72 3.66
1030 1055 2.563261 TCCACGAGACTACTCACAGT 57.437 50.000 0.00 0.00 42.72 3.55
1031 1056 2.414824 GCTTCCACGAGACTACTCACAG 60.415 54.545 0.00 0.00 42.72 3.66
1033 1058 1.540267 TGCTTCCACGAGACTACTCAC 59.460 52.381 0.00 0.00 42.72 3.51
1034 1059 1.813178 CTGCTTCCACGAGACTACTCA 59.187 52.381 0.00 0.00 42.72 3.41
1035 1060 2.085320 TCTGCTTCCACGAGACTACTC 58.915 52.381 0.00 0.00 39.54 2.59
1036 1061 1.813786 GTCTGCTTCCACGAGACTACT 59.186 52.381 0.00 0.00 34.47 2.57
1038 1063 0.803117 CGTCTGCTTCCACGAGACTA 59.197 55.000 0.00 0.00 38.32 2.59
1039 1064 1.581954 CGTCTGCTTCCACGAGACT 59.418 57.895 0.00 0.00 38.32 3.24
1040 1065 1.444553 CCGTCTGCTTCCACGAGAC 60.445 63.158 0.00 0.00 38.32 3.36
1041 1066 2.962569 CCGTCTGCTTCCACGAGA 59.037 61.111 0.00 0.00 38.32 4.04
1042 1067 2.811317 GCCGTCTGCTTCCACGAG 60.811 66.667 0.00 0.00 38.32 4.18
1045 1070 0.955428 TCATTGCCGTCTGCTTCCAC 60.955 55.000 0.00 0.00 42.00 4.02
1378 2086 0.878416 GGCAGATCGATCGAGTAGCT 59.122 55.000 26.63 17.67 0.00 3.32
1526 2279 2.361757 TGTTGTTTGCTTGGACCTCATG 59.638 45.455 0.00 0.00 0.00 3.07
1532 2285 2.794631 CGAACCTGTTGTTTGCTTGGAC 60.795 50.000 0.00 0.00 37.29 4.02
1616 2384 5.326900 TGGTATGGTTAGTACTGACTGACA 58.673 41.667 16.47 7.56 42.56 3.58
1617 2385 5.909621 TGGTATGGTTAGTACTGACTGAC 57.090 43.478 16.47 11.61 40.59 3.51
1619 2390 6.436261 CGTATGGTATGGTTAGTACTGACTG 58.564 44.000 16.47 0.00 36.28 3.51
1660 2436 3.699411 AGTTGAGCTGCTTCAGAGAAT 57.301 42.857 2.53 0.00 32.44 2.40
1665 2441 0.795085 CCGAAGTTGAGCTGCTTCAG 59.205 55.000 2.53 11.72 40.63 3.02
1932 2717 1.135199 GTTTCATACGAGGCAGACGGA 60.135 52.381 0.00 0.00 34.93 4.69
1947 2741 0.931702 ACGAATTGCACGACGTTTCA 59.068 45.000 0.00 0.00 35.47 2.69
2062 2856 4.396166 GTCTCCATTAGGGTCACAAACATG 59.604 45.833 0.00 0.00 38.11 3.21
2063 2857 4.042809 TGTCTCCATTAGGGTCACAAACAT 59.957 41.667 0.00 0.00 38.11 2.71
2253 3048 1.679153 ACCAACGAGCGGTTTCAAATT 59.321 42.857 0.00 0.00 36.49 1.82
2254 3049 1.001815 CACCAACGAGCGGTTTCAAAT 60.002 47.619 0.00 0.00 36.49 2.32
2265 3060 3.432252 GGTCATGTACTTTCACCAACGAG 59.568 47.826 0.00 0.00 0.00 4.18
2287 3082 7.352739 AGAAGACAAAGTTACAAATAGCAACG 58.647 34.615 0.00 0.00 0.00 4.10
2335 4332 5.347635 TGACTTTGCATACGAGTCAATGTAC 59.652 40.000 15.83 0.00 44.77 2.90
2463 4472 9.981114 AACCATCGATGTTCTTTCTTTATTTTT 57.019 25.926 23.27 0.00 0.00 1.94
2467 4476 7.687941 ACAACCATCGATGTTCTTTCTTTAT 57.312 32.000 23.27 0.00 0.00 1.40
2483 4492 5.841810 TGAACCAAATGAAGAACAACCATC 58.158 37.500 0.00 0.00 0.00 3.51
2489 4498 6.018262 CGACTAACTGAACCAAATGAAGAACA 60.018 38.462 0.00 0.00 0.00 3.18
2507 4516 6.807708 TTATTTCGCTGAGAATCGACTAAC 57.192 37.500 0.00 0.00 38.86 2.34
2534 4543 3.821033 AGATTAGTTTGCAGGTGTTGGTC 59.179 43.478 0.00 0.00 0.00 4.02
2567 4577 3.574826 GGTAACCAAAACCCTGCATACAA 59.425 43.478 0.00 0.00 0.00 2.41
2574 4584 0.879090 GAGCGGTAACCAAAACCCTG 59.121 55.000 0.00 0.00 33.10 4.45
2577 4587 1.228533 TTCGAGCGGTAACCAAAACC 58.771 50.000 0.00 0.00 0.00 3.27
2578 4588 3.547649 ATTTCGAGCGGTAACCAAAAC 57.452 42.857 0.00 0.00 0.00 2.43
2579 4589 4.538917 GAAATTTCGAGCGGTAACCAAAA 58.461 39.130 1.68 0.00 0.00 2.44
2580 4590 4.149910 GAAATTTCGAGCGGTAACCAAA 57.850 40.909 1.68 0.00 0.00 3.28
2581 4591 3.817148 GAAATTTCGAGCGGTAACCAA 57.183 42.857 1.68 0.00 0.00 3.67
2594 4604 7.966753 GGTAACCTTGGTAAATCTCGAAATTTC 59.033 37.037 8.20 8.20 31.50 2.17
2595 4605 7.361457 CGGTAACCTTGGTAAATCTCGAAATTT 60.361 37.037 1.76 1.76 33.54 1.82
2596 4606 6.093082 CGGTAACCTTGGTAAATCTCGAAATT 59.907 38.462 0.00 0.00 0.00 1.82
2597 4607 5.583457 CGGTAACCTTGGTAAATCTCGAAAT 59.417 40.000 0.00 0.00 0.00 2.17
2598 4608 4.931002 CGGTAACCTTGGTAAATCTCGAAA 59.069 41.667 0.00 0.00 0.00 3.46
2599 4609 4.497300 CGGTAACCTTGGTAAATCTCGAA 58.503 43.478 0.00 0.00 0.00 3.71
2600 4610 3.676873 GCGGTAACCTTGGTAAATCTCGA 60.677 47.826 0.00 0.00 0.00 4.04
2601 4611 2.606272 GCGGTAACCTTGGTAAATCTCG 59.394 50.000 0.00 0.00 0.00 4.04
2602 4612 3.602483 TGCGGTAACCTTGGTAAATCTC 58.398 45.455 0.00 0.00 0.00 2.75
2603 4613 3.706600 TGCGGTAACCTTGGTAAATCT 57.293 42.857 0.00 0.00 0.00 2.40
2604 4614 6.628919 AATATGCGGTAACCTTGGTAAATC 57.371 37.500 0.00 0.00 0.00 2.17
2605 4615 7.262048 CAAAATATGCGGTAACCTTGGTAAAT 58.738 34.615 0.00 0.00 0.00 1.40
2606 4616 6.622549 CAAAATATGCGGTAACCTTGGTAAA 58.377 36.000 0.00 0.00 0.00 2.01
2607 4617 5.393243 GCAAAATATGCGGTAACCTTGGTAA 60.393 40.000 0.00 0.00 46.87 2.85
2608 4618 4.096682 GCAAAATATGCGGTAACCTTGGTA 59.903 41.667 0.00 0.00 46.87 3.25
2609 4619 3.119280 GCAAAATATGCGGTAACCTTGGT 60.119 43.478 0.00 0.00 46.87 3.67
2610 4620 3.443976 GCAAAATATGCGGTAACCTTGG 58.556 45.455 0.00 0.00 46.87 3.61
2638 4648 2.006805 ATGCCCATTTACCGAGGGGG 62.007 60.000 0.00 0.00 43.04 5.40
2639 4649 0.106217 AATGCCCATTTACCGAGGGG 60.106 55.000 0.00 0.00 43.04 4.79
2640 4650 1.681264 GAAATGCCCATTTACCGAGGG 59.319 52.381 6.25 0.00 45.68 4.30
2641 4651 1.333619 CGAAATGCCCATTTACCGAGG 59.666 52.381 6.25 0.00 40.77 4.63
2642 4652 2.285083 TCGAAATGCCCATTTACCGAG 58.715 47.619 6.25 0.00 40.77 4.63
2643 4653 2.285083 CTCGAAATGCCCATTTACCGA 58.715 47.619 13.37 13.37 40.77 4.69
2644 4654 1.268539 GCTCGAAATGCCCATTTACCG 60.269 52.381 6.25 7.21 40.77 4.02
2645 4655 1.748493 TGCTCGAAATGCCCATTTACC 59.252 47.619 6.25 0.00 40.77 2.85
2646 4656 3.502191 TTGCTCGAAATGCCCATTTAC 57.498 42.857 6.25 1.17 40.77 2.01
2647 4657 4.527509 TTTTGCTCGAAATGCCCATTTA 57.472 36.364 6.25 0.00 40.77 1.40
2648 4658 3.399440 TTTTGCTCGAAATGCCCATTT 57.601 38.095 5.97 5.97 43.14 2.32
2649 4659 3.399440 TTTTTGCTCGAAATGCCCATT 57.601 38.095 0.00 0.00 0.00 3.16
2650 4660 3.615224 ATTTTTGCTCGAAATGCCCAT 57.385 38.095 0.00 0.00 0.00 4.00
2651 4661 3.244009 TGAATTTTTGCTCGAAATGCCCA 60.244 39.130 0.00 0.00 0.00 5.36
2652 4662 3.324993 TGAATTTTTGCTCGAAATGCCC 58.675 40.909 0.00 0.00 0.00 5.36
2653 4663 4.988708 TTGAATTTTTGCTCGAAATGCC 57.011 36.364 0.00 0.00 0.00 4.40
2654 4664 7.840981 AAATTTGAATTTTTGCTCGAAATGC 57.159 28.000 0.00 0.00 35.16 3.56
2685 4695 5.830912 ACATTGAGCGTCTGAATTCAAAAA 58.169 33.333 9.88 0.00 33.71 1.94
2686 4696 5.437289 ACATTGAGCGTCTGAATTCAAAA 57.563 34.783 9.88 0.00 33.71 2.44
2687 4697 6.741992 ATACATTGAGCGTCTGAATTCAAA 57.258 33.333 9.88 0.00 33.71 2.69
2688 4698 7.041721 ACTATACATTGAGCGTCTGAATTCAA 58.958 34.615 9.88 0.00 34.42 2.69
2689 4699 6.573434 ACTATACATTGAGCGTCTGAATTCA 58.427 36.000 8.12 8.12 0.00 2.57
2690 4700 6.697455 TGACTATACATTGAGCGTCTGAATTC 59.303 38.462 0.00 0.00 0.00 2.17
2691 4701 6.573434 TGACTATACATTGAGCGTCTGAATT 58.427 36.000 0.00 0.00 0.00 2.17
2692 4702 6.149129 TGACTATACATTGAGCGTCTGAAT 57.851 37.500 0.00 0.00 0.00 2.57
2693 4703 5.576447 TGACTATACATTGAGCGTCTGAA 57.424 39.130 0.00 0.00 0.00 3.02
2694 4704 5.067805 ACATGACTATACATTGAGCGTCTGA 59.932 40.000 0.00 0.00 0.00 3.27
2695 4705 5.284864 ACATGACTATACATTGAGCGTCTG 58.715 41.667 0.00 0.00 0.00 3.51
2696 4706 5.521906 ACATGACTATACATTGAGCGTCT 57.478 39.130 0.00 0.00 0.00 4.18
2697 4707 6.309009 CCATACATGACTATACATTGAGCGTC 59.691 42.308 0.00 0.00 0.00 5.19
2698 4708 6.159293 CCATACATGACTATACATTGAGCGT 58.841 40.000 0.00 0.00 0.00 5.07
2699 4709 6.159293 ACCATACATGACTATACATTGAGCG 58.841 40.000 0.00 0.00 0.00 5.03
2700 4710 7.276658 GCTACCATACATGACTATACATTGAGC 59.723 40.741 0.00 0.00 0.00 4.26
2701 4711 8.306761 TGCTACCATACATGACTATACATTGAG 58.693 37.037 0.00 0.00 0.00 3.02
2702 4712 8.088365 GTGCTACCATACATGACTATACATTGA 58.912 37.037 0.00 0.00 0.00 2.57
2703 4713 8.090831 AGTGCTACCATACATGACTATACATTG 58.909 37.037 0.00 0.00 0.00 2.82
2704 4714 8.195165 AGTGCTACCATACATGACTATACATT 57.805 34.615 0.00 0.00 0.00 2.71
2705 4715 7.782897 AGTGCTACCATACATGACTATACAT 57.217 36.000 0.00 0.00 0.00 2.29
2706 4716 7.286775 TCAAGTGCTACCATACATGACTATACA 59.713 37.037 0.00 0.00 0.00 2.29
2707 4717 7.595502 GTCAAGTGCTACCATACATGACTATAC 59.404 40.741 0.00 0.00 34.58 1.47
2708 4718 7.286775 TGTCAAGTGCTACCATACATGACTATA 59.713 37.037 0.00 0.00 37.43 1.31
2709 4719 6.098266 TGTCAAGTGCTACCATACATGACTAT 59.902 38.462 0.00 0.00 37.43 2.12
2710 4720 5.420739 TGTCAAGTGCTACCATACATGACTA 59.579 40.000 0.00 0.00 37.43 2.59
2711 4721 4.222810 TGTCAAGTGCTACCATACATGACT 59.777 41.667 0.00 0.00 37.43 3.41
2712 4722 4.503910 TGTCAAGTGCTACCATACATGAC 58.496 43.478 0.00 0.00 37.15 3.06
2713 4723 4.758688 CTGTCAAGTGCTACCATACATGA 58.241 43.478 0.00 0.00 0.00 3.07
2714 4724 3.310774 GCTGTCAAGTGCTACCATACATG 59.689 47.826 0.00 0.00 0.00 3.21
2715 4725 3.055167 TGCTGTCAAGTGCTACCATACAT 60.055 43.478 0.00 0.00 0.00 2.29
2716 4726 2.301583 TGCTGTCAAGTGCTACCATACA 59.698 45.455 0.00 0.00 0.00 2.29
2717 4727 2.673368 GTGCTGTCAAGTGCTACCATAC 59.327 50.000 0.00 0.00 0.00 2.39
2718 4728 2.673893 CGTGCTGTCAAGTGCTACCATA 60.674 50.000 0.00 0.00 0.00 2.74
2719 4729 1.813513 GTGCTGTCAAGTGCTACCAT 58.186 50.000 0.00 0.00 0.00 3.55
2720 4730 0.599991 CGTGCTGTCAAGTGCTACCA 60.600 55.000 0.00 0.00 0.00 3.25
2721 4731 1.901650 GCGTGCTGTCAAGTGCTACC 61.902 60.000 0.00 0.00 0.00 3.18
2722 4732 0.946221 AGCGTGCTGTCAAGTGCTAC 60.946 55.000 0.00 0.00 30.19 3.58
2723 4733 0.249868 AAGCGTGCTGTCAAGTGCTA 60.250 50.000 0.00 0.00 31.25 3.49
2724 4734 1.524621 AAGCGTGCTGTCAAGTGCT 60.525 52.632 0.00 0.00 32.30 4.40
2725 4735 1.369689 CAAGCGTGCTGTCAAGTGC 60.370 57.895 0.00 0.00 0.00 4.40
2726 4736 1.193203 CTACAAGCGTGCTGTCAAGTG 59.807 52.381 0.00 0.00 0.00 3.16
2727 4737 1.068588 TCTACAAGCGTGCTGTCAAGT 59.931 47.619 0.00 0.00 0.00 3.16
2728 4738 1.457303 GTCTACAAGCGTGCTGTCAAG 59.543 52.381 0.00 0.00 0.00 3.02
2729 4739 1.202475 TGTCTACAAGCGTGCTGTCAA 60.202 47.619 0.00 0.00 0.00 3.18
2730 4740 0.387565 TGTCTACAAGCGTGCTGTCA 59.612 50.000 0.00 0.00 0.00 3.58
2731 4741 1.192534 GTTGTCTACAAGCGTGCTGTC 59.807 52.381 0.00 0.00 36.39 3.51
2732 4742 1.217882 GTTGTCTACAAGCGTGCTGT 58.782 50.000 0.00 0.00 36.39 4.40
2733 4743 0.161658 CGTTGTCTACAAGCGTGCTG 59.838 55.000 0.00 0.00 36.39 4.41
2734 4744 0.249322 ACGTTGTCTACAAGCGTGCT 60.249 50.000 16.79 0.00 39.83 4.40
2735 4745 0.580104 AACGTTGTCTACAAGCGTGC 59.420 50.000 17.65 0.00 40.53 5.34
2736 4746 2.655577 CGAAACGTTGTCTACAAGCGTG 60.656 50.000 17.65 0.00 40.53 5.34
2737 4747 1.519758 CGAAACGTTGTCTACAAGCGT 59.480 47.619 0.00 13.74 41.52 5.07
2738 4748 1.717429 GCGAAACGTTGTCTACAAGCG 60.717 52.381 0.00 12.83 36.39 4.68
2739 4749 1.525619 AGCGAAACGTTGTCTACAAGC 59.474 47.619 0.00 0.00 36.39 4.01
2740 4750 2.792674 TCAGCGAAACGTTGTCTACAAG 59.207 45.455 0.00 0.00 39.03 3.16
2741 4751 2.792674 CTCAGCGAAACGTTGTCTACAA 59.207 45.455 0.00 0.00 39.03 2.41
2742 4752 2.390938 CTCAGCGAAACGTTGTCTACA 58.609 47.619 0.00 0.00 39.03 2.74
2743 4753 1.124477 GCTCAGCGAAACGTTGTCTAC 59.876 52.381 0.00 0.00 39.03 2.59
2744 4754 1.000607 AGCTCAGCGAAACGTTGTCTA 60.001 47.619 0.00 0.00 39.03 2.59
2745 4755 0.249489 AGCTCAGCGAAACGTTGTCT 60.249 50.000 0.00 0.00 39.03 3.41
2746 4756 1.387084 CTAGCTCAGCGAAACGTTGTC 59.613 52.381 0.00 0.86 39.03 3.18
2747 4757 1.269621 ACTAGCTCAGCGAAACGTTGT 60.270 47.619 0.00 0.00 39.03 3.32
2748 4758 1.419374 ACTAGCTCAGCGAAACGTTG 58.581 50.000 0.00 0.00 39.31 4.10
2749 4759 2.864968 CTACTAGCTCAGCGAAACGTT 58.135 47.619 0.00 0.00 0.00 3.99
2750 4760 1.467713 GCTACTAGCTCAGCGAAACGT 60.468 52.381 0.35 0.00 38.45 3.99
2751 4761 1.192793 GCTACTAGCTCAGCGAAACG 58.807 55.000 0.35 0.00 38.45 3.60
2762 4772 5.509771 GTTCGGTAGTTAAGAGCTACTAGC 58.490 45.833 11.80 11.80 42.84 3.42
2763 4773 5.277250 CCGTTCGGTAGTTAAGAGCTACTAG 60.277 48.000 2.82 0.00 38.92 2.57
2764 4774 4.572389 CCGTTCGGTAGTTAAGAGCTACTA 59.428 45.833 2.82 0.00 38.92 1.82
2765 4775 3.376546 CCGTTCGGTAGTTAAGAGCTACT 59.623 47.826 2.82 0.00 38.92 2.57
2766 4776 3.127721 ACCGTTCGGTAGTTAAGAGCTAC 59.872 47.826 15.43 0.00 36.64 3.58
2767 4777 3.347216 ACCGTTCGGTAGTTAAGAGCTA 58.653 45.455 15.43 0.00 36.64 3.32
2768 4778 2.165998 ACCGTTCGGTAGTTAAGAGCT 58.834 47.619 15.43 0.00 36.64 4.09
2769 4779 2.643933 ACCGTTCGGTAGTTAAGAGC 57.356 50.000 15.43 0.00 36.64 4.09
2770 4780 5.490139 TCATACCGTTCGGTAGTTAAGAG 57.510 43.478 24.55 11.25 43.10 2.85
2771 4781 6.455360 AATCATACCGTTCGGTAGTTAAGA 57.545 37.500 24.55 17.47 43.10 2.10
2772 4782 9.897744 TTATAATCATACCGTTCGGTAGTTAAG 57.102 33.333 24.55 13.92 43.10 1.85
2781 4791 8.515473 TCTGTTGATTATAATCATACCGTTCG 57.485 34.615 25.05 10.61 44.27 3.95
2832 4842 3.130164 TGTTGAAATACCGATTGGGCATG 59.870 43.478 3.39 0.00 40.62 4.06
2835 4845 2.490115 TGTGTTGAAATACCGATTGGGC 59.510 45.455 3.39 0.00 40.62 5.36
2880 4893 9.195411 CTCTAATCATCTGAATAGAACTGCTTC 57.805 37.037 6.48 0.00 36.46 3.86
2892 4905 6.527423 TGCATGCATACTCTAATCATCTGAA 58.473 36.000 18.46 0.00 0.00 3.02
2923 8465 4.676546 CTGATGTCAGCTATTTCGTCTCA 58.323 43.478 0.00 0.00 37.15 3.27
2940 8482 7.544217 TCTGAATTTGAATGAACATTGCTGATG 59.456 33.333 4.72 0.00 41.71 3.07
2941 8483 7.608153 TCTGAATTTGAATGAACATTGCTGAT 58.392 30.769 4.72 0.00 0.00 2.90
2945 8487 7.383029 TGAGTTCTGAATTTGAATGAACATTGC 59.617 33.333 4.72 0.00 39.33 3.56
2951 8493 9.820725 ACATTTTGAGTTCTGAATTTGAATGAA 57.179 25.926 16.14 0.00 0.00 2.57
2986 8531 6.870971 AGTTTTAATCTGAGCAACGGTTTA 57.129 33.333 0.00 0.00 0.00 2.01
3008 8553 7.255770 ACGAAACTTTTACGTGAAAACAAAG 57.744 32.000 6.96 4.34 38.79 2.77
3035 8580 6.405953 GGGATCTAGTTTTGAAGATCTCGTCA 60.406 42.308 11.05 0.00 37.77 4.35
3040 8585 7.205515 ACATGGGATCTAGTTTTGAAGATCT 57.794 36.000 11.05 0.00 37.77 2.75
3052 8597 5.466728 CGAAACATACCAACATGGGATCTAG 59.533 44.000 0.00 0.00 35.81 2.43
3096 8641 8.086522 TGTAGTCTAGATGTGGTAACTTTTGAC 58.913 37.037 0.00 0.00 37.61 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.