Multiple sequence alignment - TraesCS6D01G367200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G367200 chr6D 100.000 3590 0 0 1 3590 455097645 455101234 0.000000e+00 6630
1 TraesCS6D01G367200 chr6D 93.031 1148 37 15 1521 2651 455251546 455252667 0.000000e+00 1637
2 TraesCS6D01G367200 chr6D 86.091 1100 91 26 1573 2658 455134675 455135726 0.000000e+00 1127
3 TraesCS6D01G367200 chr6D 91.856 528 33 6 987 1509 455251043 455251565 0.000000e+00 728
4 TraesCS6D01G367200 chr6D 81.414 877 97 30 630 1472 455133774 455134618 0.000000e+00 656
5 TraesCS6D01G367200 chr6D 90.274 401 23 8 2254 2651 455295218 455295605 8.890000e-141 510
6 TraesCS6D01G367200 chr6D 95.406 283 13 0 3172 3454 350262253 350261971 5.470000e-123 451
7 TraesCS6D01G367200 chr6D 90.970 299 23 2 631 928 455250715 455251010 2.010000e-107 399
8 TraesCS6D01G367200 chr6D 84.642 293 38 4 329 618 455250444 455250732 5.870000e-73 285
9 TraesCS6D01G367200 chr6B 96.266 1098 39 1 152 1249 692232846 692233941 0.000000e+00 1799
10 TraesCS6D01G367200 chr6B 97.283 957 24 2 1244 2199 692234060 692235015 0.000000e+00 1622
11 TraesCS6D01G367200 chr6B 95.484 930 32 7 2235 3157 692235018 692235944 0.000000e+00 1476
12 TraesCS6D01G367200 chr6B 88.980 971 94 11 1521 2489 692339015 692339974 0.000000e+00 1188
13 TraesCS6D01G367200 chr6B 96.618 680 10 7 1531 2199 692428757 692429434 0.000000e+00 1116
14 TraesCS6D01G367200 chr6B 89.784 881 49 28 631 1502 692427915 692428763 0.000000e+00 1090
15 TraesCS6D01G367200 chr6B 84.455 1055 130 22 1573 2617 692259666 692260696 0.000000e+00 1009
16 TraesCS6D01G367200 chr6B 80.858 862 105 30 637 1472 692258785 692259612 1.090000e-174 623
17 TraesCS6D01G367200 chr6B 92.621 393 18 4 1119 1509 692338651 692339034 4.050000e-154 555
18 TraesCS6D01G367200 chr6B 91.899 358 15 6 2235 2592 692429437 692429780 4.170000e-134 488
19 TraesCS6D01G367200 chr6B 96.071 280 11 0 3175 3454 682836534 682836255 1.170000e-124 457
20 TraesCS6D01G367200 chr6B 84.199 462 34 17 666 1125 692337846 692338270 2.580000e-111 412
21 TraesCS6D01G367200 chr6B 83.729 295 39 5 329 618 692427642 692427932 1.640000e-68 270
22 TraesCS6D01G367200 chr6A 86.215 1654 135 48 1554 3178 601472832 601474421 0.000000e+00 1705
23 TraesCS6D01G367200 chr6A 92.395 1144 34 20 1521 2651 601950587 601951690 0.000000e+00 1581
24 TraesCS6D01G367200 chr6A 90.691 1042 79 11 438 1471 601471755 601472786 0.000000e+00 1371
25 TraesCS6D01G367200 chr6A 90.692 881 42 18 631 1509 601949764 601950606 0.000000e+00 1136
26 TraesCS6D01G367200 chr6A 86.120 915 92 20 1580 2483 601873013 601873903 0.000000e+00 953
27 TraesCS6D01G367200 chr6A 82.987 529 62 21 985 1491 601872442 601872964 1.520000e-123 453
28 TraesCS6D01G367200 chr6A 90.735 313 28 1 1 312 601471427 601471739 1.990000e-112 416
29 TraesCS6D01G367200 chr6A 84.694 294 37 5 329 618 601949492 601949781 1.630000e-73 287
30 TraesCS6D01G367200 chr6A 86.567 134 14 1 2529 2658 601873910 601874043 1.040000e-30 145
31 TraesCS6D01G367200 chr1D 97.491 279 7 0 3176 3454 203866202 203866480 9.020000e-131 477
32 TraesCS6D01G367200 chr1D 96.727 275 9 0 3178 3452 105249563 105249289 3.270000e-125 459
33 TraesCS6D01G367200 chr3D 96.181 288 8 2 3168 3455 585091260 585091544 5.430000e-128 468
34 TraesCS6D01G367200 chr3D 95.486 288 12 1 3169 3456 283613109 283613395 3.270000e-125 459
35 TraesCS6D01G367200 chr7D 94.845 291 14 1 3174 3464 90452734 90453023 1.520000e-123 453
36 TraesCS6D01G367200 chr5D 95.439 285 12 1 3178 3462 376445174 376444891 1.520000e-123 453
37 TraesCS6D01G367200 chr4D 95.088 285 14 0 3175 3459 504259617 504259333 1.970000e-122 449


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G367200 chr6D 455097645 455101234 3589 False 6630.000000 6630 100.000000 1 3590 1 chr6D.!!$F1 3589
1 TraesCS6D01G367200 chr6D 455133774 455135726 1952 False 891.500000 1127 83.752500 630 2658 2 chr6D.!!$F3 2028
2 TraesCS6D01G367200 chr6D 455250444 455252667 2223 False 762.250000 1637 90.124750 329 2651 4 chr6D.!!$F4 2322
3 TraesCS6D01G367200 chr6B 692232846 692235944 3098 False 1632.333333 1799 96.344333 152 3157 3 chr6B.!!$F1 3005
4 TraesCS6D01G367200 chr6B 692258785 692260696 1911 False 816.000000 1009 82.656500 637 2617 2 chr6B.!!$F2 1980
5 TraesCS6D01G367200 chr6B 692427642 692429780 2138 False 741.000000 1116 90.507500 329 2592 4 chr6B.!!$F4 2263
6 TraesCS6D01G367200 chr6B 692337846 692339974 2128 False 718.333333 1188 88.600000 666 2489 3 chr6B.!!$F3 1823
7 TraesCS6D01G367200 chr6A 601471427 601474421 2994 False 1164.000000 1705 89.213667 1 3178 3 chr6A.!!$F1 3177
8 TraesCS6D01G367200 chr6A 601949492 601951690 2198 False 1001.333333 1581 89.260333 329 2651 3 chr6A.!!$F3 2322
9 TraesCS6D01G367200 chr6A 601872442 601874043 1601 False 517.000000 953 85.224667 985 2658 3 chr6A.!!$F2 1673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 747 1.103803 TATGTGTGACCGGAGAGCTC 58.896 55.0 9.46 5.27 0.00 4.09 F
1171 1592 6.437094 AGTAGACTACTTTCTGTCGTTTGAC 58.563 40.0 9.45 0.00 39.82 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2006 2622 1.177256 ACGCACGTACAAGAGGTCCT 61.177 55.0 0.0 0.0 0.0 3.85 R
3000 3703 0.032952 ATACCGTGTGTGTTGAGCGT 59.967 50.0 0.0 0.0 0.0 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 30 3.780902 TGGCTGTGTATATCAAGTCACG 58.219 45.455 0.00 0.00 34.08 4.35
29 31 3.194755 TGGCTGTGTATATCAAGTCACGT 59.805 43.478 0.00 0.00 34.08 4.49
30 32 3.551890 GGCTGTGTATATCAAGTCACGTG 59.448 47.826 9.94 9.94 34.08 4.49
46 48 1.628846 ACGTGGAGGCCTAAAGTGAAT 59.371 47.619 4.42 0.00 0.00 2.57
54 56 5.418840 GGAGGCCTAAAGTGAATTCATTTGA 59.581 40.000 15.98 8.56 0.00 2.69
92 94 6.702282 GGAAACTAATCTTTCGAGGACTATGG 59.298 42.308 0.00 0.00 31.81 2.74
109 111 7.680310 AGGACTATGGTAGCTATATTTGGATGT 59.320 37.037 0.00 0.00 0.00 3.06
150 152 6.976349 CACTATTTGAATGTATGTGCAATGCT 59.024 34.615 6.82 0.00 0.00 3.79
154 156 4.862350 TGAATGTATGTGCAATGCTATGC 58.138 39.130 6.82 5.56 46.58 3.14
240 242 2.874701 GCACGAGGATGTCAGCATATTT 59.125 45.455 0.00 0.00 35.07 1.40
465 469 2.196595 CCACACCCCAAAGATCTAGGA 58.803 52.381 14.17 0.00 0.00 2.94
496 500 7.220030 AGAATGGAAGAATGACGTAGCATAAT 58.780 34.615 0.00 0.00 0.00 1.28
536 544 4.521146 ACAATTCAGGAGAAGCTGTATGG 58.479 43.478 0.00 0.00 37.14 2.74
565 573 4.086706 AGCTAAAGTGTACACCAAAGCT 57.913 40.909 27.82 27.82 36.05 3.74
626 635 5.868257 CGTAGCACATTAGATTTTTCAGCA 58.132 37.500 0.00 0.00 0.00 4.41
734 747 1.103803 TATGTGTGACCGGAGAGCTC 58.896 55.000 9.46 5.27 0.00 4.09
1171 1592 6.437094 AGTAGACTACTTTCTGTCGTTTGAC 58.563 40.000 9.45 0.00 39.82 3.18
1234 1672 7.977293 TCTTTGCCACTGATTGATTAATTGATG 59.023 33.333 0.00 0.00 0.00 3.07
1360 1936 8.986477 AAGCGCATAAAAGAAAGATGTAAATT 57.014 26.923 11.47 0.00 0.00 1.82
2006 2622 0.323087 ACTTGAGCTCATGCATGGCA 60.323 50.000 29.62 19.54 44.86 4.92
2108 2736 2.581354 CCCTTCACGCTCTCCCTG 59.419 66.667 0.00 0.00 0.00 4.45
2226 2858 2.382746 CGGCCGATGGATACGCATG 61.383 63.158 24.07 0.00 42.51 4.06
2229 2861 1.300971 GCCGATGGATACGCATGCAT 61.301 55.000 19.57 4.54 45.01 3.96
2230 2862 2.006552 GCCGATGGATACGCATGCATA 61.007 52.381 19.57 7.36 42.67 3.14
2362 2999 1.542472 TCTACATGAACAAGACGCCGA 59.458 47.619 0.00 0.00 0.00 5.54
2792 3445 2.880890 GCTAGTATTGTTGCCCATCTGG 59.119 50.000 0.00 0.00 37.09 3.86
2853 3506 0.036952 CTGTCTGTGCCGATTGGTCT 60.037 55.000 0.00 0.00 37.67 3.85
2933 3594 5.989777 ACAAAACACTCCTCATATATACGGC 59.010 40.000 0.00 0.00 0.00 5.68
2978 3681 6.178507 CGAGCATCTTAAAATACACTCAACG 58.821 40.000 0.00 0.00 0.00 4.10
2979 3682 5.869350 AGCATCTTAAAATACACTCAACGC 58.131 37.500 0.00 0.00 0.00 4.84
2980 3683 5.411361 AGCATCTTAAAATACACTCAACGCA 59.589 36.000 0.00 0.00 0.00 5.24
2981 3684 5.508224 GCATCTTAAAATACACTCAACGCAC 59.492 40.000 0.00 0.00 0.00 5.34
2982 3685 5.600908 TCTTAAAATACACTCAACGCACC 57.399 39.130 0.00 0.00 0.00 5.01
2983 3686 5.057819 TCTTAAAATACACTCAACGCACCA 58.942 37.500 0.00 0.00 0.00 4.17
2984 3687 5.703592 TCTTAAAATACACTCAACGCACCAT 59.296 36.000 0.00 0.00 0.00 3.55
2985 3688 3.829886 AAATACACTCAACGCACCATG 57.170 42.857 0.00 0.00 0.00 3.66
2986 3689 1.086696 ATACACTCAACGCACCATGC 58.913 50.000 0.00 0.00 40.69 4.06
2987 3690 0.250081 TACACTCAACGCACCATGCA 60.250 50.000 1.20 0.00 45.36 3.96
2988 3691 1.100463 ACACTCAACGCACCATGCAA 61.100 50.000 0.00 0.00 45.36 4.08
2989 3692 0.030504 CACTCAACGCACCATGCAAA 59.969 50.000 0.00 0.00 45.36 3.68
2990 3693 0.743688 ACTCAACGCACCATGCAAAA 59.256 45.000 0.00 0.00 45.36 2.44
2991 3694 1.135915 ACTCAACGCACCATGCAAAAA 59.864 42.857 0.00 0.00 45.36 1.94
3034 3737 4.023536 ACACGGTATTAGGCAAACACAAAG 60.024 41.667 0.00 0.00 0.00 2.77
3036 3739 4.822896 ACGGTATTAGGCAAACACAAAGAA 59.177 37.500 0.00 0.00 0.00 2.52
3040 3743 7.096230 CGGTATTAGGCAAACACAAAGAAAAAG 60.096 37.037 0.00 0.00 0.00 2.27
3051 3758 9.921637 AAACACAAAGAAAAAGATAAACACTCA 57.078 25.926 0.00 0.00 0.00 3.41
3120 3827 4.330074 GGTTGTTGTTGACGGATCTGATAG 59.670 45.833 9.00 0.00 0.00 2.08
3127 3834 2.952310 TGACGGATCTGATAGTGTGGAG 59.048 50.000 9.00 0.00 0.00 3.86
3146 3853 1.521450 GGTAGTATGCCGAGCGCCTA 61.521 60.000 2.29 0.00 36.24 3.93
3157 3864 2.223876 CCGAGCGCCTATTGTTAGGTAA 60.224 50.000 2.29 0.00 45.99 2.85
3161 3868 3.069158 AGCGCCTATTGTTAGGTAATCGT 59.931 43.478 2.29 0.00 45.99 3.73
3173 3880 9.438228 TTGTTAGGTAATCGTCAAACATTATCA 57.562 29.630 0.00 0.00 0.00 2.15
3174 3881 8.875803 TGTTAGGTAATCGTCAAACATTATCAC 58.124 33.333 0.00 0.00 0.00 3.06
3175 3882 9.095065 GTTAGGTAATCGTCAAACATTATCACT 57.905 33.333 0.00 0.00 0.00 3.41
3178 3885 9.314321 AGGTAATCGTCAAACATTATCACTAAG 57.686 33.333 0.00 0.00 0.00 2.18
3179 3886 9.309516 GGTAATCGTCAAACATTATCACTAAGA 57.690 33.333 0.00 0.00 0.00 2.10
3183 3890 8.906636 TCGTCAAACATTATCACTAAGACTAC 57.093 34.615 0.00 0.00 0.00 2.73
3184 3891 7.972277 TCGTCAAACATTATCACTAAGACTACC 59.028 37.037 0.00 0.00 0.00 3.18
3185 3892 7.222224 CGTCAAACATTATCACTAAGACTACCC 59.778 40.741 0.00 0.00 0.00 3.69
3186 3893 8.038944 GTCAAACATTATCACTAAGACTACCCA 58.961 37.037 0.00 0.00 0.00 4.51
3187 3894 8.038944 TCAAACATTATCACTAAGACTACCCAC 58.961 37.037 0.00 0.00 0.00 4.61
3188 3895 7.490657 AACATTATCACTAAGACTACCCACA 57.509 36.000 0.00 0.00 0.00 4.17
3189 3896 7.113658 ACATTATCACTAAGACTACCCACAG 57.886 40.000 0.00 0.00 0.00 3.66
3190 3897 6.668283 ACATTATCACTAAGACTACCCACAGT 59.332 38.462 0.00 0.00 0.00 3.55
3191 3898 6.525578 TTATCACTAAGACTACCCACAGTG 57.474 41.667 0.00 0.00 35.76 3.66
3192 3899 3.162666 TCACTAAGACTACCCACAGTGG 58.837 50.000 13.35 13.35 35.29 4.00
3204 3911 3.543680 CCACAGTGGGAGTAACATAGG 57.456 52.381 12.40 0.00 32.67 2.57
3205 3912 2.838202 CCACAGTGGGAGTAACATAGGT 59.162 50.000 12.40 0.00 32.67 3.08
3206 3913 3.369471 CCACAGTGGGAGTAACATAGGTG 60.369 52.174 12.40 0.00 32.67 4.00
3207 3914 2.838202 ACAGTGGGAGTAACATAGGTGG 59.162 50.000 0.00 0.00 0.00 4.61
3208 3915 2.838202 CAGTGGGAGTAACATAGGTGGT 59.162 50.000 0.00 0.00 0.00 4.16
3209 3916 4.028131 CAGTGGGAGTAACATAGGTGGTA 58.972 47.826 0.00 0.00 0.00 3.25
3210 3917 4.468510 CAGTGGGAGTAACATAGGTGGTAA 59.531 45.833 0.00 0.00 0.00 2.85
3211 3918 4.468868 AGTGGGAGTAACATAGGTGGTAAC 59.531 45.833 0.00 0.00 0.00 2.50
3228 3935 5.914033 TGGTAACATGACACTTATCTAGGC 58.086 41.667 0.00 0.00 46.17 3.93
3229 3936 5.423931 TGGTAACATGACACTTATCTAGGCA 59.576 40.000 0.00 0.00 46.17 4.75
3230 3937 6.070481 TGGTAACATGACACTTATCTAGGCAA 60.070 38.462 0.00 0.00 46.17 4.52
3231 3938 6.821665 GGTAACATGACACTTATCTAGGCAAA 59.178 38.462 0.00 0.00 0.00 3.68
3232 3939 7.335924 GGTAACATGACACTTATCTAGGCAAAA 59.664 37.037 0.00 0.00 0.00 2.44
3233 3940 7.944729 AACATGACACTTATCTAGGCAAAAT 57.055 32.000 0.00 0.00 0.00 1.82
3235 3942 8.668510 ACATGACACTTATCTAGGCAAAATAG 57.331 34.615 0.00 0.00 0.00 1.73
3236 3943 8.486210 ACATGACACTTATCTAGGCAAAATAGA 58.514 33.333 0.00 0.00 33.93 1.98
3237 3944 9.499479 CATGACACTTATCTAGGCAAAATAGAT 57.501 33.333 0.00 1.51 41.66 1.98
3238 3945 8.893219 TGACACTTATCTAGGCAAAATAGATG 57.107 34.615 5.87 0.00 39.68 2.90
3239 3946 8.704668 TGACACTTATCTAGGCAAAATAGATGA 58.295 33.333 5.87 0.00 39.68 2.92
3240 3947 9.717942 GACACTTATCTAGGCAAAATAGATGAT 57.282 33.333 5.87 0.00 39.68 2.45
3241 3948 9.499479 ACACTTATCTAGGCAAAATAGATGATG 57.501 33.333 5.87 4.45 39.68 3.07
3242 3949 9.499479 CACTTATCTAGGCAAAATAGATGATGT 57.501 33.333 5.87 0.75 39.68 3.06
3243 3950 9.499479 ACTTATCTAGGCAAAATAGATGATGTG 57.501 33.333 5.87 0.00 39.68 3.21
3244 3951 8.853077 TTATCTAGGCAAAATAGATGATGTGG 57.147 34.615 5.87 0.00 39.68 4.17
3245 3952 5.065914 TCTAGGCAAAATAGATGATGTGGC 58.934 41.667 0.00 0.00 32.08 5.01
3246 3953 3.634504 AGGCAAAATAGATGATGTGGCA 58.365 40.909 0.00 0.00 33.54 4.92
3247 3954 4.220724 AGGCAAAATAGATGATGTGGCAT 58.779 39.130 0.00 0.00 33.54 4.40
3248 3955 4.038763 AGGCAAAATAGATGATGTGGCATG 59.961 41.667 0.00 0.00 33.54 4.06
3249 3956 4.202182 GGCAAAATAGATGATGTGGCATGT 60.202 41.667 0.00 0.00 32.18 3.21
3250 3957 5.009911 GGCAAAATAGATGATGTGGCATGTA 59.990 40.000 0.00 0.00 32.18 2.29
3251 3958 6.461370 GGCAAAATAGATGATGTGGCATGTAA 60.461 38.462 0.00 0.00 32.18 2.41
3252 3959 7.149973 GCAAAATAGATGATGTGGCATGTAAT 58.850 34.615 0.00 0.00 29.35 1.89
3253 3960 7.654520 GCAAAATAGATGATGTGGCATGTAATT 59.345 33.333 0.00 0.00 29.35 1.40
3258 3965 9.743581 ATAGATGATGTGGCATGTAATTAATGA 57.256 29.630 0.00 0.00 29.35 2.57
3259 3966 8.467963 AGATGATGTGGCATGTAATTAATGAA 57.532 30.769 0.00 0.00 0.00 2.57
3260 3967 8.573885 AGATGATGTGGCATGTAATTAATGAAG 58.426 33.333 0.00 0.00 0.00 3.02
3261 3968 7.878547 TGATGTGGCATGTAATTAATGAAGA 57.121 32.000 0.00 0.00 0.00 2.87
3262 3969 8.291191 TGATGTGGCATGTAATTAATGAAGAA 57.709 30.769 0.00 0.00 0.00 2.52
3263 3970 8.747471 TGATGTGGCATGTAATTAATGAAGAAA 58.253 29.630 0.00 0.00 0.00 2.52
3264 3971 9.241317 GATGTGGCATGTAATTAATGAAGAAAG 57.759 33.333 0.00 0.00 0.00 2.62
3265 3972 8.347004 TGTGGCATGTAATTAATGAAGAAAGA 57.653 30.769 0.00 0.00 0.00 2.52
3266 3973 8.461222 TGTGGCATGTAATTAATGAAGAAAGAG 58.539 33.333 0.00 0.00 0.00 2.85
3267 3974 8.677300 GTGGCATGTAATTAATGAAGAAAGAGA 58.323 33.333 0.00 0.00 0.00 3.10
3268 3975 8.896744 TGGCATGTAATTAATGAAGAAAGAGAG 58.103 33.333 10.14 0.00 0.00 3.20
3269 3976 8.348507 GGCATGTAATTAATGAAGAAAGAGAGG 58.651 37.037 10.14 0.00 0.00 3.69
3270 3977 7.859875 GCATGTAATTAATGAAGAAAGAGAGGC 59.140 37.037 10.14 0.00 0.00 4.70
3271 3978 8.896744 CATGTAATTAATGAAGAAAGAGAGGCA 58.103 33.333 0.00 0.00 0.00 4.75
3272 3979 9.638176 ATGTAATTAATGAAGAAAGAGAGGCAT 57.362 29.630 0.00 0.00 0.00 4.40
3273 3980 8.896744 TGTAATTAATGAAGAAAGAGAGGCATG 58.103 33.333 0.00 0.00 0.00 4.06
3274 3981 7.951347 AATTAATGAAGAAAGAGAGGCATGT 57.049 32.000 0.00 0.00 0.00 3.21
3275 3982 6.748333 TTAATGAAGAAAGAGAGGCATGTG 57.252 37.500 0.00 0.00 0.00 3.21
3276 3983 3.063510 TGAAGAAAGAGAGGCATGTGG 57.936 47.619 0.00 0.00 0.00 4.17
3277 3984 2.373169 TGAAGAAAGAGAGGCATGTGGT 59.627 45.455 0.00 0.00 0.00 4.16
3278 3985 3.582647 TGAAGAAAGAGAGGCATGTGGTA 59.417 43.478 0.00 0.00 0.00 3.25
3279 3986 4.041567 TGAAGAAAGAGAGGCATGTGGTAA 59.958 41.667 0.00 0.00 0.00 2.85
3280 3987 3.944087 AGAAAGAGAGGCATGTGGTAAC 58.056 45.455 0.00 0.00 0.00 2.50
3299 4006 8.352137 TGGTAACATAGCTAGTTACTGTAACA 57.648 34.615 27.12 19.73 46.49 2.41
3300 4007 8.974238 TGGTAACATAGCTAGTTACTGTAACAT 58.026 33.333 27.12 16.67 46.49 2.71
3301 4008 9.460906 GGTAACATAGCTAGTTACTGTAACATC 57.539 37.037 27.12 16.94 46.49 3.06
3303 4010 8.928270 AACATAGCTAGTTACTGTAACATCAC 57.072 34.615 27.12 15.70 41.07 3.06
3304 4011 8.063200 ACATAGCTAGTTACTGTAACATCACA 57.937 34.615 27.12 12.96 41.07 3.58
3305 4012 7.974501 ACATAGCTAGTTACTGTAACATCACAC 59.025 37.037 27.12 13.16 41.07 3.82
3306 4013 6.340962 AGCTAGTTACTGTAACATCACACA 57.659 37.500 27.12 7.11 41.07 3.72
3307 4014 6.936279 AGCTAGTTACTGTAACATCACACAT 58.064 36.000 27.12 10.64 41.07 3.21
3308 4015 8.063200 AGCTAGTTACTGTAACATCACACATA 57.937 34.615 27.12 11.12 41.07 2.29
3309 4016 8.696374 AGCTAGTTACTGTAACATCACACATAT 58.304 33.333 27.12 9.43 41.07 1.78
3310 4017 8.969267 GCTAGTTACTGTAACATCACACATATC 58.031 37.037 27.12 5.73 41.07 1.63
3313 4020 9.371136 AGTTACTGTAACATCACACATATCAAG 57.629 33.333 27.12 0.00 41.07 3.02
3314 4021 9.366216 GTTACTGTAACATCACACATATCAAGA 57.634 33.333 22.30 0.00 38.52 3.02
3315 4022 9.936759 TTACTGTAACATCACACATATCAAGAA 57.063 29.630 0.00 0.00 0.00 2.52
3316 4023 8.846943 ACTGTAACATCACACATATCAAGAAA 57.153 30.769 0.00 0.00 0.00 2.52
3317 4024 9.283768 ACTGTAACATCACACATATCAAGAAAA 57.716 29.630 0.00 0.00 0.00 2.29
3353 4060 9.502145 ACAACGTAATAAATAAAGTGATGCATG 57.498 29.630 2.46 0.00 0.00 4.06
3354 4061 9.715123 CAACGTAATAAATAAAGTGATGCATGA 57.285 29.630 2.46 0.00 0.00 3.07
3355 4062 9.716507 AACGTAATAAATAAAGTGATGCATGAC 57.283 29.630 8.39 8.39 0.00 3.06
3356 4063 8.888716 ACGTAATAAATAAAGTGATGCATGACA 58.111 29.630 18.76 1.11 0.00 3.58
3357 4064 9.158364 CGTAATAAATAAAGTGATGCATGACAC 57.842 33.333 18.76 14.04 37.30 3.67
3360 4067 8.915871 ATAAATAAAGTGATGCATGACACAAC 57.084 30.769 18.76 0.00 39.18 3.32
3361 4068 5.963176 ATAAAGTGATGCATGACACAACA 57.037 34.783 18.76 0.00 39.18 3.33
3362 4069 3.631145 AAGTGATGCATGACACAACAC 57.369 42.857 18.76 11.21 39.18 3.32
3363 4070 2.574450 AGTGATGCATGACACAACACA 58.426 42.857 18.76 0.00 39.18 3.72
3364 4071 2.291465 AGTGATGCATGACACAACACAC 59.709 45.455 18.76 9.81 39.18 3.82
3365 4072 2.033174 GTGATGCATGACACAACACACA 59.967 45.455 11.72 0.00 37.05 3.72
3366 4073 2.885894 TGATGCATGACACAACACACAT 59.114 40.909 2.46 0.00 0.00 3.21
3367 4074 2.778187 TGCATGACACAACACACATG 57.222 45.000 0.00 0.00 41.72 3.21
3368 4075 2.022934 TGCATGACACAACACACATGT 58.977 42.857 0.00 0.00 42.46 3.21
3381 4088 4.980573 ACACACATGTTACTACCCATTGT 58.019 39.130 0.00 0.00 34.46 2.71
3382 4089 4.759693 ACACACATGTTACTACCCATTGTG 59.240 41.667 0.00 0.00 34.46 3.33
3383 4090 4.155826 CACACATGTTACTACCCATTGTGG 59.844 45.833 0.00 0.00 37.25 4.17
3384 4091 4.042311 ACACATGTTACTACCCATTGTGGA 59.958 41.667 0.00 0.00 40.96 4.02
3385 4092 4.635765 CACATGTTACTACCCATTGTGGAG 59.364 45.833 0.00 0.00 40.96 3.86
3386 4093 3.992943 TGTTACTACCCATTGTGGAGG 57.007 47.619 0.00 0.00 40.96 4.30
3387 4094 3.253220 TGTTACTACCCATTGTGGAGGT 58.747 45.455 0.00 0.00 40.96 3.85
3388 4095 4.427637 TGTTACTACCCATTGTGGAGGTA 58.572 43.478 0.00 0.00 40.96 3.08
3393 4100 3.994931 ACCCATTGTGGAGGTAGTAAC 57.005 47.619 0.00 0.00 40.96 2.50
3394 4101 3.253220 ACCCATTGTGGAGGTAGTAACA 58.747 45.455 0.00 0.00 40.96 2.41
3395 4102 3.850173 ACCCATTGTGGAGGTAGTAACAT 59.150 43.478 0.00 0.00 40.96 2.71
3396 4103 5.034200 ACCCATTGTGGAGGTAGTAACATA 58.966 41.667 0.00 0.00 40.96 2.29
3397 4104 5.130477 ACCCATTGTGGAGGTAGTAACATAG 59.870 44.000 0.00 0.00 40.96 2.23
3398 4105 5.365605 CCCATTGTGGAGGTAGTAACATAGA 59.634 44.000 0.00 0.00 40.96 1.98
3399 4106 6.281405 CCATTGTGGAGGTAGTAACATAGAC 58.719 44.000 0.00 0.00 40.96 2.59
3400 4107 6.098409 CCATTGTGGAGGTAGTAACATAGACT 59.902 42.308 0.00 0.00 40.96 3.24
3401 4108 7.287005 CCATTGTGGAGGTAGTAACATAGACTA 59.713 40.741 0.00 0.00 40.96 2.59
3402 4109 7.876936 TTGTGGAGGTAGTAACATAGACTAG 57.123 40.000 0.00 0.00 30.08 2.57
3403 4110 6.966751 TGTGGAGGTAGTAACATAGACTAGT 58.033 40.000 0.00 0.00 30.08 2.57
3404 4111 8.094284 TGTGGAGGTAGTAACATAGACTAGTA 57.906 38.462 0.00 0.00 30.08 1.82
3405 4112 8.551440 TGTGGAGGTAGTAACATAGACTAGTAA 58.449 37.037 0.00 0.00 30.08 2.24
3406 4113 8.835439 GTGGAGGTAGTAACATAGACTAGTAAC 58.165 40.741 0.00 0.00 30.08 2.50
3407 4114 8.551440 TGGAGGTAGTAACATAGACTAGTAACA 58.449 37.037 0.00 0.00 30.08 2.41
3408 4115 8.835439 GGAGGTAGTAACATAGACTAGTAACAC 58.165 40.741 0.00 0.00 30.08 3.32
3409 4116 9.388506 GAGGTAGTAACATAGACTAGTAACACA 57.611 37.037 0.00 0.00 30.08 3.72
3410 4117 9.917887 AGGTAGTAACATAGACTAGTAACACAT 57.082 33.333 0.00 0.00 30.08 3.21
3411 4118 9.947669 GGTAGTAACATAGACTAGTAACACATG 57.052 37.037 0.00 0.00 30.08 3.21
3412 4119 9.448294 GTAGTAACATAGACTAGTAACACATGC 57.552 37.037 0.00 0.00 30.08 4.06
3413 4120 8.063200 AGTAACATAGACTAGTAACACATGCA 57.937 34.615 0.00 0.00 0.00 3.96
3414 4121 8.696374 AGTAACATAGACTAGTAACACATGCAT 58.304 33.333 0.00 0.00 0.00 3.96
3415 4122 7.776933 AACATAGACTAGTAACACATGCATG 57.223 36.000 25.09 25.09 0.00 4.06
3416 4123 6.878317 ACATAGACTAGTAACACATGCATGT 58.122 36.000 26.61 26.61 42.84 3.21
3417 4124 7.331026 ACATAGACTAGTAACACATGCATGTT 58.669 34.615 29.48 19.29 44.87 2.71
3418 4125 8.474831 ACATAGACTAGTAACACATGCATGTTA 58.525 33.333 29.48 18.22 42.73 2.41
3428 4135 7.834068 AACACATGCATGTTACTAGTCTAAG 57.166 36.000 29.48 15.51 41.04 2.18
3429 4136 6.936279 ACACATGCATGTTACTAGTCTAAGT 58.064 36.000 29.48 16.14 39.39 2.24
3430 4137 7.386851 ACACATGCATGTTACTAGTCTAAGTT 58.613 34.615 29.48 0.00 39.39 2.66
3431 4138 8.528643 ACACATGCATGTTACTAGTCTAAGTTA 58.471 33.333 29.48 0.00 39.39 2.24
3432 4139 8.808529 CACATGCATGTTACTAGTCTAAGTTAC 58.191 37.037 29.48 0.00 39.39 2.50
3433 4140 8.750298 ACATGCATGTTACTAGTCTAAGTTACT 58.250 33.333 26.61 0.00 37.90 2.24
3436 4143 8.680903 TGCATGTTACTAGTCTAAGTTACTACC 58.319 37.037 0.00 0.00 31.82 3.18
3437 4144 8.134261 GCATGTTACTAGTCTAAGTTACTACCC 58.866 40.741 0.00 0.00 31.82 3.69
3438 4145 9.182214 CATGTTACTAGTCTAAGTTACTACCCA 57.818 37.037 0.00 0.00 31.82 4.51
3439 4146 9.933240 ATGTTACTAGTCTAAGTTACTACCCAT 57.067 33.333 0.00 0.00 31.82 4.00
3440 4147 9.759473 TGTTACTAGTCTAAGTTACTACCCATT 57.241 33.333 0.00 0.00 31.82 3.16
3442 4149 9.759473 TTACTAGTCTAAGTTACTACCCATTGT 57.241 33.333 0.00 0.00 0.00 2.71
3443 4150 8.064336 ACTAGTCTAAGTTACTACCCATTGTG 57.936 38.462 0.00 0.00 0.00 3.33
3444 4151 7.892241 ACTAGTCTAAGTTACTACCCATTGTGA 59.108 37.037 0.00 0.00 0.00 3.58
3445 4152 6.932947 AGTCTAAGTTACTACCCATTGTGAC 58.067 40.000 0.00 0.00 0.00 3.67
3446 4153 6.724905 AGTCTAAGTTACTACCCATTGTGACT 59.275 38.462 0.00 0.00 35.08 3.41
3447 4154 7.892241 AGTCTAAGTTACTACCCATTGTGACTA 59.108 37.037 0.00 0.00 32.96 2.59
3448 4155 8.189460 GTCTAAGTTACTACCCATTGTGACTAG 58.811 40.741 0.00 0.00 32.96 2.57
3449 4156 6.930068 AAGTTACTACCCATTGTGACTAGT 57.070 37.500 0.00 0.00 32.96 2.57
3450 4157 6.527057 AGTTACTACCCATTGTGACTAGTC 57.473 41.667 16.32 16.32 32.48 2.59
3451 4158 6.254522 AGTTACTACCCATTGTGACTAGTCT 58.745 40.000 23.01 0.19 32.48 3.24
3452 4159 7.408543 AGTTACTACCCATTGTGACTAGTCTA 58.591 38.462 23.01 10.02 32.48 2.59
3453 4160 7.892241 AGTTACTACCCATTGTGACTAGTCTAA 59.108 37.037 23.01 17.50 32.48 2.10
3454 4161 8.526147 GTTACTACCCATTGTGACTAGTCTAAA 58.474 37.037 23.01 16.70 0.00 1.85
3455 4162 7.735326 ACTACCCATTGTGACTAGTCTAAAT 57.265 36.000 23.01 18.03 0.00 1.40
3456 4163 7.556844 ACTACCCATTGTGACTAGTCTAAATG 58.443 38.462 27.26 27.26 35.16 2.32
3457 4164 6.374417 ACCCATTGTGACTAGTCTAAATGT 57.626 37.500 29.30 19.24 34.38 2.71
3458 4165 7.490657 ACCCATTGTGACTAGTCTAAATGTA 57.509 36.000 29.30 10.18 34.38 2.29
3459 4166 8.090788 ACCCATTGTGACTAGTCTAAATGTAT 57.909 34.615 29.30 21.33 34.38 2.29
3460 4167 7.987458 ACCCATTGTGACTAGTCTAAATGTATG 59.013 37.037 29.30 23.48 34.38 2.39
3461 4168 7.041780 CCCATTGTGACTAGTCTAAATGTATGC 60.042 40.741 29.30 6.60 34.38 3.14
3462 4169 7.041780 CCATTGTGACTAGTCTAAATGTATGCC 60.042 40.741 29.30 6.45 34.38 4.40
3463 4170 5.588240 TGTGACTAGTCTAAATGTATGCCG 58.412 41.667 23.01 0.00 0.00 5.69
3464 4171 5.358725 TGTGACTAGTCTAAATGTATGCCGA 59.641 40.000 23.01 0.00 0.00 5.54
3465 4172 5.915758 GTGACTAGTCTAAATGTATGCCGAG 59.084 44.000 23.01 0.00 0.00 4.63
3466 4173 5.593095 TGACTAGTCTAAATGTATGCCGAGT 59.407 40.000 23.01 0.00 0.00 4.18
3467 4174 6.769341 TGACTAGTCTAAATGTATGCCGAGTA 59.231 38.462 23.01 0.00 0.00 2.59
3468 4175 6.968250 ACTAGTCTAAATGTATGCCGAGTAC 58.032 40.000 0.00 0.00 0.00 2.73
3469 4176 5.197682 AGTCTAAATGTATGCCGAGTACC 57.802 43.478 0.00 0.00 0.00 3.34
3470 4177 4.894114 AGTCTAAATGTATGCCGAGTACCT 59.106 41.667 0.00 0.00 0.00 3.08
3471 4178 6.066690 AGTCTAAATGTATGCCGAGTACCTA 58.933 40.000 0.00 0.00 0.00 3.08
3472 4179 6.548622 AGTCTAAATGTATGCCGAGTACCTAA 59.451 38.462 0.00 0.00 0.00 2.69
3473 4180 7.069085 AGTCTAAATGTATGCCGAGTACCTAAA 59.931 37.037 0.00 0.00 0.00 1.85
3474 4181 7.707893 GTCTAAATGTATGCCGAGTACCTAAAA 59.292 37.037 0.00 0.00 0.00 1.52
3475 4182 8.259411 TCTAAATGTATGCCGAGTACCTAAAAA 58.741 33.333 0.00 0.00 0.00 1.94
3476 4183 7.875327 AAATGTATGCCGAGTACCTAAAAAT 57.125 32.000 0.00 0.00 0.00 1.82
3477 4184 6.861065 ATGTATGCCGAGTACCTAAAAATG 57.139 37.500 0.00 0.00 0.00 2.32
3478 4185 5.120399 TGTATGCCGAGTACCTAAAAATGG 58.880 41.667 0.00 0.00 0.00 3.16
3479 4186 2.361789 TGCCGAGTACCTAAAAATGGC 58.638 47.619 0.00 0.00 41.56 4.40
3480 4187 2.361789 GCCGAGTACCTAAAAATGGCA 58.638 47.619 0.00 0.00 40.88 4.92
3481 4188 2.096980 GCCGAGTACCTAAAAATGGCAC 59.903 50.000 0.00 0.00 40.88 5.01
3482 4189 3.606687 CCGAGTACCTAAAAATGGCACT 58.393 45.455 0.00 0.00 34.14 4.40
3483 4190 3.621715 CCGAGTACCTAAAAATGGCACTC 59.378 47.826 0.00 0.00 41.97 3.51
3484 4191 4.250464 CGAGTACCTAAAAATGGCACTCA 58.750 43.478 12.03 0.00 44.29 3.41
3485 4192 4.693566 CGAGTACCTAAAAATGGCACTCAA 59.306 41.667 12.03 0.00 44.29 3.02
3486 4193 5.390567 CGAGTACCTAAAAATGGCACTCAAC 60.391 44.000 12.03 0.00 44.29 3.18
3487 4194 5.381757 AGTACCTAAAAATGGCACTCAACA 58.618 37.500 0.00 0.00 0.00 3.33
3488 4195 6.010219 AGTACCTAAAAATGGCACTCAACAT 58.990 36.000 0.00 0.00 0.00 2.71
3489 4196 5.806654 ACCTAAAAATGGCACTCAACATT 57.193 34.783 0.00 0.00 38.85 2.71
3490 4197 6.173427 ACCTAAAAATGGCACTCAACATTT 57.827 33.333 0.00 0.00 46.11 2.32
3574 4281 9.632638 TGCTATATTTCTTCTTTTTCATAGCCT 57.367 29.630 0.00 0.00 39.08 4.58
3583 4290 9.574516 TCTTCTTTTTCATAGCCTTTACTTTCT 57.425 29.630 0.00 0.00 0.00 2.52
3588 4295 8.788325 TTTTCATAGCCTTTACTTTCTACTCC 57.212 34.615 0.00 0.00 0.00 3.85
3589 4296 6.481434 TCATAGCCTTTACTTTCTACTCCC 57.519 41.667 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.002087 CTTTAGGCCTCCACGTGACTT 59.998 52.381 19.30 2.43 0.00 3.01
28 30 3.686016 TGAATTCACTTTAGGCCTCCAC 58.314 45.455 9.68 0.00 0.00 4.02
29 31 4.591321 ATGAATTCACTTTAGGCCTCCA 57.409 40.909 9.68 0.00 0.00 3.86
30 32 5.418840 TCAAATGAATTCACTTTAGGCCTCC 59.581 40.000 9.68 0.00 0.00 4.30
46 48 9.921637 GTTTCCAGGTTATACAATTCAAATGAA 57.078 29.630 0.00 0.00 38.56 2.57
62 64 5.012768 TCCTCGAAAGATTAGTTTCCAGGTT 59.987 40.000 9.06 0.00 42.41 3.50
63 65 4.530946 TCCTCGAAAGATTAGTTTCCAGGT 59.469 41.667 9.06 0.00 42.41 4.00
67 69 6.702282 CCATAGTCCTCGAAAGATTAGTTTCC 59.298 42.308 0.00 0.00 40.84 3.13
81 83 6.377429 TCCAAATATAGCTACCATAGTCCTCG 59.623 42.308 0.00 0.00 0.00 4.63
86 88 8.207350 ACACATCCAAATATAGCTACCATAGT 57.793 34.615 0.00 0.00 0.00 2.12
122 124 9.786105 CATTGCACATACATTCAAATAGTGTTA 57.214 29.630 0.00 0.00 0.00 2.41
150 152 7.307514 CGTTGTACAACTTTAAAGAGGTGCATA 60.308 37.037 30.47 13.90 37.90 3.14
154 156 6.257193 AGACGTTGTACAACTTTAAAGAGGTG 59.743 38.462 30.47 16.70 40.24 4.00
210 212 5.142061 TGACATCCTCGTGCTTTTTAGTA 57.858 39.130 0.00 0.00 0.00 1.82
375 377 7.668469 TGAGAGGACTATTCACACTGTTAGTTA 59.332 37.037 0.00 0.00 0.00 2.24
465 469 4.202441 CGTCATTCTTCCATTCTTCCCAT 58.798 43.478 0.00 0.00 0.00 4.00
496 500 3.766068 TGTTGTACACCCCGAATTGTA 57.234 42.857 0.00 0.00 0.00 2.41
635 644 7.749570 GCATAATTGAGCTTATCTAATGTGCTG 59.250 37.037 0.00 0.00 33.83 4.41
734 747 2.665649 TGACTACCTTGGTGTATGCG 57.334 50.000 2.03 0.00 0.00 4.73
1171 1592 1.822990 AGATGCTGCAAAAGGGTGATG 59.177 47.619 6.36 0.00 0.00 3.07
1202 1623 7.893124 AATCAATCAGTGGCAAAGATAAGAT 57.107 32.000 3.68 7.54 0.00 2.40
1203 1624 8.806429 TTAATCAATCAGTGGCAAAGATAAGA 57.194 30.769 3.68 5.89 0.00 2.10
1234 1672 6.267471 TCACTAGAGCTAGTACTAGACTACCC 59.733 46.154 30.09 13.23 43.98 3.69
1360 1936 8.603181 CGATGACTTGTGATAATTGTATGACAA 58.397 33.333 0.00 0.00 40.26 3.18
1895 2511 2.581354 GCAGATCCAGCCGAGTGT 59.419 61.111 0.00 0.00 0.00 3.55
2006 2622 1.177256 ACGCACGTACAAGAGGTCCT 61.177 55.000 0.00 0.00 0.00 3.85
2226 2858 8.226448 GCTTGAGAGAATTGTATGTATGTATGC 58.774 37.037 0.00 0.00 0.00 3.14
2229 2861 9.264719 CATGCTTGAGAGAATTGTATGTATGTA 57.735 33.333 0.00 0.00 0.00 2.29
2230 2862 7.989170 TCATGCTTGAGAGAATTGTATGTATGT 59.011 33.333 0.00 0.00 0.00 2.29
2319 2956 2.695666 CACGTAGAGGACCATCTGGATT 59.304 50.000 2.55 0.00 38.94 3.01
2362 2999 1.304713 CCTTGACCTGGCTTGCCAT 60.305 57.895 15.21 0.62 0.00 4.40
2773 3426 3.780294 ACTCCAGATGGGCAACAATACTA 59.220 43.478 0.00 0.00 36.21 1.82
2896 3557 1.890041 TTTTGTGACGGTGCTCGGG 60.890 57.895 5.18 0.00 44.45 5.14
2996 3699 1.466697 CCGTGTGTGTTGAGCGTTTTT 60.467 47.619 0.00 0.00 0.00 1.94
2997 3700 0.098025 CCGTGTGTGTTGAGCGTTTT 59.902 50.000 0.00 0.00 0.00 2.43
2998 3701 1.022451 ACCGTGTGTGTTGAGCGTTT 61.022 50.000 0.00 0.00 0.00 3.60
2999 3702 0.179105 TACCGTGTGTGTTGAGCGTT 60.179 50.000 0.00 0.00 0.00 4.84
3000 3703 0.032952 ATACCGTGTGTGTTGAGCGT 59.967 50.000 0.00 0.00 0.00 5.07
3001 3704 1.144969 AATACCGTGTGTGTTGAGCG 58.855 50.000 0.00 0.00 0.00 5.03
3002 3705 2.671396 CCTAATACCGTGTGTGTTGAGC 59.329 50.000 0.00 0.00 30.23 4.26
3003 3706 2.671396 GCCTAATACCGTGTGTGTTGAG 59.329 50.000 0.00 0.00 30.23 3.02
3004 3707 2.037381 TGCCTAATACCGTGTGTGTTGA 59.963 45.455 0.00 0.00 30.23 3.18
3005 3708 2.418692 TGCCTAATACCGTGTGTGTTG 58.581 47.619 0.00 0.00 30.23 3.33
3006 3709 2.843401 TGCCTAATACCGTGTGTGTT 57.157 45.000 0.00 0.00 32.54 3.32
3013 3716 4.391155 TCTTTGTGTTTGCCTAATACCGT 58.609 39.130 0.00 0.00 0.00 4.83
3014 3717 5.365403 TTCTTTGTGTTTGCCTAATACCG 57.635 39.130 0.00 0.00 0.00 4.02
3034 3737 9.677567 TGTTTATGCTGAGTGTTTATCTTTTTC 57.322 29.630 0.00 0.00 0.00 2.29
3036 3739 9.683069 CTTGTTTATGCTGAGTGTTTATCTTTT 57.317 29.630 0.00 0.00 0.00 2.27
3040 3743 7.061094 GCAACTTGTTTATGCTGAGTGTTTATC 59.939 37.037 0.00 0.00 37.12 1.75
3120 3827 1.067212 CTCGGCATACTACCTCCACAC 59.933 57.143 0.00 0.00 0.00 3.82
3127 3834 1.521450 TAGGCGCTCGGCATACTACC 61.521 60.000 17.74 0.00 46.16 3.18
3157 3864 9.517609 GTAGTCTTAGTGATAATGTTTGACGAT 57.482 33.333 0.00 0.00 0.00 3.73
3161 3868 8.038944 GTGGGTAGTCTTAGTGATAATGTTTGA 58.961 37.037 0.00 0.00 0.00 2.69
3172 3879 3.594603 CCACTGTGGGTAGTCTTAGTG 57.405 52.381 19.23 0.00 36.27 2.74
3184 3891 2.838202 ACCTATGTTACTCCCACTGTGG 59.162 50.000 20.01 20.01 37.25 4.17
3185 3892 3.369471 CCACCTATGTTACTCCCACTGTG 60.369 52.174 0.00 0.00 0.00 3.66
3186 3893 2.838202 CCACCTATGTTACTCCCACTGT 59.162 50.000 0.00 0.00 0.00 3.55
3187 3894 2.838202 ACCACCTATGTTACTCCCACTG 59.162 50.000 0.00 0.00 0.00 3.66
3188 3895 3.200958 ACCACCTATGTTACTCCCACT 57.799 47.619 0.00 0.00 0.00 4.00
3189 3896 4.223477 TGTTACCACCTATGTTACTCCCAC 59.777 45.833 0.00 0.00 0.00 4.61
3190 3897 4.427637 TGTTACCACCTATGTTACTCCCA 58.572 43.478 0.00 0.00 0.00 4.37
3191 3898 5.129815 TCATGTTACCACCTATGTTACTCCC 59.870 44.000 0.00 0.00 0.00 4.30
3192 3899 6.047231 GTCATGTTACCACCTATGTTACTCC 58.953 44.000 0.00 0.00 0.00 3.85
3193 3900 6.534079 GTGTCATGTTACCACCTATGTTACTC 59.466 42.308 0.00 0.00 0.00 2.59
3194 3901 6.212791 AGTGTCATGTTACCACCTATGTTACT 59.787 38.462 0.00 0.00 0.00 2.24
3195 3902 6.403878 AGTGTCATGTTACCACCTATGTTAC 58.596 40.000 0.00 0.00 0.00 2.50
3196 3903 6.614694 AGTGTCATGTTACCACCTATGTTA 57.385 37.500 0.00 0.00 0.00 2.41
3197 3904 5.499004 AGTGTCATGTTACCACCTATGTT 57.501 39.130 0.00 0.00 0.00 2.71
3198 3905 5.499004 AAGTGTCATGTTACCACCTATGT 57.501 39.130 0.00 0.00 0.00 2.29
3199 3906 7.500992 AGATAAGTGTCATGTTACCACCTATG 58.499 38.462 0.00 0.00 0.00 2.23
3200 3907 7.676683 AGATAAGTGTCATGTTACCACCTAT 57.323 36.000 0.00 0.00 0.00 2.57
3201 3908 7.287005 CCTAGATAAGTGTCATGTTACCACCTA 59.713 40.741 0.00 0.00 0.00 3.08
3202 3909 6.098409 CCTAGATAAGTGTCATGTTACCACCT 59.902 42.308 0.00 0.00 0.00 4.00
3203 3910 6.281405 CCTAGATAAGTGTCATGTTACCACC 58.719 44.000 0.00 0.00 0.00 4.61
3204 3911 5.753921 GCCTAGATAAGTGTCATGTTACCAC 59.246 44.000 0.00 0.00 0.00 4.16
3205 3912 5.423931 TGCCTAGATAAGTGTCATGTTACCA 59.576 40.000 0.00 0.00 0.00 3.25
3206 3913 5.914033 TGCCTAGATAAGTGTCATGTTACC 58.086 41.667 0.00 0.00 0.00 2.85
3207 3914 7.843490 TTTGCCTAGATAAGTGTCATGTTAC 57.157 36.000 0.00 0.00 0.00 2.50
3209 3916 7.944729 ATTTTGCCTAGATAAGTGTCATGTT 57.055 32.000 0.00 0.00 0.00 2.71
3210 3917 8.486210 TCTATTTTGCCTAGATAAGTGTCATGT 58.514 33.333 0.00 0.00 0.00 3.21
3211 3918 8.893219 TCTATTTTGCCTAGATAAGTGTCATG 57.107 34.615 0.00 0.00 0.00 3.07
3212 3919 9.499479 CATCTATTTTGCCTAGATAAGTGTCAT 57.501 33.333 0.00 0.00 34.84 3.06
3213 3920 8.704668 TCATCTATTTTGCCTAGATAAGTGTCA 58.295 33.333 0.00 0.00 34.84 3.58
3214 3921 9.717942 ATCATCTATTTTGCCTAGATAAGTGTC 57.282 33.333 0.00 0.00 34.84 3.67
3215 3922 9.499479 CATCATCTATTTTGCCTAGATAAGTGT 57.501 33.333 0.00 0.00 34.84 3.55
3216 3923 9.499479 ACATCATCTATTTTGCCTAGATAAGTG 57.501 33.333 0.00 0.00 34.84 3.16
3217 3924 9.499479 CACATCATCTATTTTGCCTAGATAAGT 57.501 33.333 0.00 0.00 34.84 2.24
3218 3925 8.944029 CCACATCATCTATTTTGCCTAGATAAG 58.056 37.037 0.00 0.00 34.84 1.73
3219 3926 7.391554 GCCACATCATCTATTTTGCCTAGATAA 59.608 37.037 0.00 0.00 34.84 1.75
3220 3927 6.881065 GCCACATCATCTATTTTGCCTAGATA 59.119 38.462 0.00 0.00 34.84 1.98
3221 3928 5.709164 GCCACATCATCTATTTTGCCTAGAT 59.291 40.000 0.00 0.00 36.58 1.98
3222 3929 5.065914 GCCACATCATCTATTTTGCCTAGA 58.934 41.667 0.00 0.00 0.00 2.43
3223 3930 4.823442 TGCCACATCATCTATTTTGCCTAG 59.177 41.667 0.00 0.00 0.00 3.02
3224 3931 4.790937 TGCCACATCATCTATTTTGCCTA 58.209 39.130 0.00 0.00 0.00 3.93
3225 3932 3.634504 TGCCACATCATCTATTTTGCCT 58.365 40.909 0.00 0.00 0.00 4.75
3226 3933 4.202182 ACATGCCACATCATCTATTTTGCC 60.202 41.667 0.00 0.00 0.00 4.52
3227 3934 4.940463 ACATGCCACATCATCTATTTTGC 58.060 39.130 0.00 0.00 0.00 3.68
3232 3939 9.743581 TCATTAATTACATGCCACATCATCTAT 57.256 29.630 0.00 0.00 0.00 1.98
3233 3940 9.571816 TTCATTAATTACATGCCACATCATCTA 57.428 29.630 0.00 0.00 0.00 1.98
3234 3941 8.467963 TTCATTAATTACATGCCACATCATCT 57.532 30.769 0.00 0.00 0.00 2.90
3235 3942 8.570488 TCTTCATTAATTACATGCCACATCATC 58.430 33.333 0.00 0.00 0.00 2.92
3236 3943 8.467963 TCTTCATTAATTACATGCCACATCAT 57.532 30.769 0.00 0.00 0.00 2.45
3237 3944 7.878547 TCTTCATTAATTACATGCCACATCA 57.121 32.000 0.00 0.00 0.00 3.07
3238 3945 9.241317 CTTTCTTCATTAATTACATGCCACATC 57.759 33.333 0.00 0.00 0.00 3.06
3239 3946 8.970020 TCTTTCTTCATTAATTACATGCCACAT 58.030 29.630 0.00 0.00 0.00 3.21
3240 3947 8.347004 TCTTTCTTCATTAATTACATGCCACA 57.653 30.769 0.00 0.00 0.00 4.17
3241 3948 8.677300 TCTCTTTCTTCATTAATTACATGCCAC 58.323 33.333 0.00 0.00 0.00 5.01
3242 3949 8.806429 TCTCTTTCTTCATTAATTACATGCCA 57.194 30.769 0.00 0.00 0.00 4.92
3243 3950 8.348507 CCTCTCTTTCTTCATTAATTACATGCC 58.651 37.037 0.00 0.00 0.00 4.40
3244 3951 7.859875 GCCTCTCTTTCTTCATTAATTACATGC 59.140 37.037 0.00 0.00 0.00 4.06
3245 3952 8.896744 TGCCTCTCTTTCTTCATTAATTACATG 58.103 33.333 0.00 0.00 0.00 3.21
3246 3953 9.638176 ATGCCTCTCTTTCTTCATTAATTACAT 57.362 29.630 0.00 0.00 0.00 2.29
3247 3954 8.896744 CATGCCTCTCTTTCTTCATTAATTACA 58.103 33.333 0.00 0.00 0.00 2.41
3248 3955 8.897752 ACATGCCTCTCTTTCTTCATTAATTAC 58.102 33.333 0.00 0.00 0.00 1.89
3249 3956 8.896744 CACATGCCTCTCTTTCTTCATTAATTA 58.103 33.333 0.00 0.00 0.00 1.40
3250 3957 7.147949 CCACATGCCTCTCTTTCTTCATTAATT 60.148 37.037 0.00 0.00 0.00 1.40
3251 3958 6.320672 CCACATGCCTCTCTTTCTTCATTAAT 59.679 38.462 0.00 0.00 0.00 1.40
3252 3959 5.649395 CCACATGCCTCTCTTTCTTCATTAA 59.351 40.000 0.00 0.00 0.00 1.40
3253 3960 5.188434 CCACATGCCTCTCTTTCTTCATTA 58.812 41.667 0.00 0.00 0.00 1.90
3254 3961 4.015084 CCACATGCCTCTCTTTCTTCATT 58.985 43.478 0.00 0.00 0.00 2.57
3255 3962 3.009916 ACCACATGCCTCTCTTTCTTCAT 59.990 43.478 0.00 0.00 0.00 2.57
3256 3963 2.373169 ACCACATGCCTCTCTTTCTTCA 59.627 45.455 0.00 0.00 0.00 3.02
3257 3964 3.064900 ACCACATGCCTCTCTTTCTTC 57.935 47.619 0.00 0.00 0.00 2.87
3258 3965 4.202461 TGTTACCACATGCCTCTCTTTCTT 60.202 41.667 0.00 0.00 0.00 2.52
3259 3966 3.327757 TGTTACCACATGCCTCTCTTTCT 59.672 43.478 0.00 0.00 0.00 2.52
3260 3967 3.674997 TGTTACCACATGCCTCTCTTTC 58.325 45.455 0.00 0.00 0.00 2.62
3261 3968 3.788227 TGTTACCACATGCCTCTCTTT 57.212 42.857 0.00 0.00 0.00 2.52
3262 3969 4.684485 GCTATGTTACCACATGCCTCTCTT 60.684 45.833 0.00 0.00 43.92 2.85
3263 3970 3.181461 GCTATGTTACCACATGCCTCTCT 60.181 47.826 0.00 0.00 43.92 3.10
3264 3971 3.134458 GCTATGTTACCACATGCCTCTC 58.866 50.000 0.00 0.00 43.92 3.20
3265 3972 2.774234 AGCTATGTTACCACATGCCTCT 59.226 45.455 0.00 0.00 43.92 3.69
3266 3973 3.199880 AGCTATGTTACCACATGCCTC 57.800 47.619 0.00 0.00 43.92 4.70
3267 3974 3.711704 ACTAGCTATGTTACCACATGCCT 59.288 43.478 0.00 0.00 43.92 4.75
3268 3975 4.073293 ACTAGCTATGTTACCACATGCC 57.927 45.455 0.00 0.00 43.92 4.40
3269 3976 6.201044 CAGTAACTAGCTATGTTACCACATGC 59.799 42.308 25.92 11.98 46.31 4.06
3270 3977 7.265673 ACAGTAACTAGCTATGTTACCACATG 58.734 38.462 25.92 22.03 46.31 3.21
3271 3978 7.419711 ACAGTAACTAGCTATGTTACCACAT 57.580 36.000 25.92 14.84 46.31 3.21
3272 3979 6.845758 ACAGTAACTAGCTATGTTACCACA 57.154 37.500 25.92 6.86 46.31 4.17
3273 3980 8.246180 TGTTACAGTAACTAGCTATGTTACCAC 58.754 37.037 25.92 20.75 46.31 4.16
3274 3981 8.352137 TGTTACAGTAACTAGCTATGTTACCA 57.648 34.615 25.92 19.04 46.31 3.25
3275 3982 9.460906 GATGTTACAGTAACTAGCTATGTTACC 57.539 37.037 25.92 17.65 46.31 2.85
3278 3985 8.528643 TGTGATGTTACAGTAACTAGCTATGTT 58.471 33.333 21.56 7.75 39.38 2.71
3279 3986 7.974501 GTGTGATGTTACAGTAACTAGCTATGT 59.025 37.037 21.56 0.00 39.38 2.29
3280 3987 7.973944 TGTGTGATGTTACAGTAACTAGCTATG 59.026 37.037 21.56 0.00 39.38 2.23
3281 3988 8.063200 TGTGTGATGTTACAGTAACTAGCTAT 57.937 34.615 21.56 8.59 39.38 2.97
3282 3989 7.457024 TGTGTGATGTTACAGTAACTAGCTA 57.543 36.000 21.56 4.25 39.38 3.32
3283 3990 6.340962 TGTGTGATGTTACAGTAACTAGCT 57.659 37.500 21.56 6.57 39.38 3.32
3284 3991 8.873215 ATATGTGTGATGTTACAGTAACTAGC 57.127 34.615 21.56 12.59 39.38 3.42
3287 3994 9.371136 CTTGATATGTGTGATGTTACAGTAACT 57.629 33.333 21.56 9.41 39.38 2.24
3288 3995 9.366216 TCTTGATATGTGTGATGTTACAGTAAC 57.634 33.333 15.58 15.58 39.11 2.50
3289 3996 9.936759 TTCTTGATATGTGTGATGTTACAGTAA 57.063 29.630 0.00 0.00 0.00 2.24
3290 3997 9.936759 TTTCTTGATATGTGTGATGTTACAGTA 57.063 29.630 0.00 0.00 0.00 2.74
3291 3998 8.846943 TTTCTTGATATGTGTGATGTTACAGT 57.153 30.769 0.00 0.00 0.00 3.55
3327 4034 9.502145 CATGCATCACTTTATTTATTACGTTGT 57.498 29.630 0.00 0.00 0.00 3.32
3328 4035 9.715123 TCATGCATCACTTTATTTATTACGTTG 57.285 29.630 0.00 0.00 0.00 4.10
3329 4036 9.716507 GTCATGCATCACTTTATTTATTACGTT 57.283 29.630 0.00 0.00 0.00 3.99
3330 4037 8.888716 TGTCATGCATCACTTTATTTATTACGT 58.111 29.630 1.37 0.00 0.00 3.57
3331 4038 9.158364 GTGTCATGCATCACTTTATTTATTACG 57.842 33.333 1.37 0.00 0.00 3.18
3334 4041 9.357652 GTTGTGTCATGCATCACTTTATTTATT 57.642 29.630 16.78 0.00 35.82 1.40
3335 4042 8.522003 TGTTGTGTCATGCATCACTTTATTTAT 58.478 29.630 16.78 0.00 35.82 1.40
3336 4043 7.807433 GTGTTGTGTCATGCATCACTTTATTTA 59.193 33.333 16.78 0.00 35.82 1.40
3337 4044 6.642131 GTGTTGTGTCATGCATCACTTTATTT 59.358 34.615 16.78 0.00 35.82 1.40
3338 4045 6.151691 GTGTTGTGTCATGCATCACTTTATT 58.848 36.000 16.78 0.00 35.82 1.40
3339 4046 5.241285 TGTGTTGTGTCATGCATCACTTTAT 59.759 36.000 16.78 0.00 35.82 1.40
3340 4047 4.578105 TGTGTTGTGTCATGCATCACTTTA 59.422 37.500 16.78 3.63 35.82 1.85
3341 4048 3.380954 TGTGTTGTGTCATGCATCACTTT 59.619 39.130 16.78 0.00 35.82 2.66
3342 4049 2.950975 TGTGTTGTGTCATGCATCACTT 59.049 40.909 16.78 0.00 35.82 3.16
3343 4050 2.291465 GTGTGTTGTGTCATGCATCACT 59.709 45.455 16.78 0.00 35.82 3.41
3344 4051 2.033174 TGTGTGTTGTGTCATGCATCAC 59.967 45.455 10.76 10.76 35.43 3.06
3345 4052 2.295885 TGTGTGTTGTGTCATGCATCA 58.704 42.857 0.00 0.00 0.00 3.07
3346 4053 3.239254 CATGTGTGTTGTGTCATGCATC 58.761 45.455 0.00 0.00 32.83 3.91
3347 4054 2.624364 ACATGTGTGTTGTGTCATGCAT 59.376 40.909 0.00 0.00 40.57 3.96
3348 4055 2.022934 ACATGTGTGTTGTGTCATGCA 58.977 42.857 0.00 0.00 40.57 3.96
3349 4056 2.780065 ACATGTGTGTTGTGTCATGC 57.220 45.000 0.00 0.00 40.57 4.06
3357 4064 9.589488 CCACAATGGGTAGTAACATGTGTGTTG 62.589 44.444 0.00 0.00 40.34 3.33
3358 4065 7.688629 CCACAATGGGTAGTAACATGTGTGTT 61.689 42.308 0.00 0.00 41.76 3.32
3359 4066 4.759693 CACAATGGGTAGTAACATGTGTGT 59.240 41.667 0.00 0.00 41.28 3.72
3360 4067 4.155826 CCACAATGGGTAGTAACATGTGTG 59.844 45.833 0.00 14.56 36.71 3.82
3361 4068 4.042311 TCCACAATGGGTAGTAACATGTGT 59.958 41.667 0.00 0.00 38.32 3.72
3362 4069 4.584874 TCCACAATGGGTAGTAACATGTG 58.415 43.478 0.00 9.75 38.32 3.21
3363 4070 4.324254 CCTCCACAATGGGTAGTAACATGT 60.324 45.833 0.00 0.00 38.32 3.21
3364 4071 4.199310 CCTCCACAATGGGTAGTAACATG 58.801 47.826 0.00 0.00 38.32 3.21
3365 4072 3.850173 ACCTCCACAATGGGTAGTAACAT 59.150 43.478 0.00 0.00 38.32 2.71
3366 4073 3.253220 ACCTCCACAATGGGTAGTAACA 58.747 45.455 0.00 0.00 38.32 2.41
3367 4074 3.994931 ACCTCCACAATGGGTAGTAAC 57.005 47.619 0.00 0.00 38.32 2.50
3372 4079 4.427637 TGTTACTACCTCCACAATGGGTA 58.572 43.478 0.00 0.00 38.32 3.69
3373 4080 3.253220 TGTTACTACCTCCACAATGGGT 58.747 45.455 0.00 0.00 38.32 4.51
3374 4081 3.992943 TGTTACTACCTCCACAATGGG 57.007 47.619 0.00 0.00 38.32 4.00
3375 4082 6.098409 AGTCTATGTTACTACCTCCACAATGG 59.902 42.308 0.00 0.00 39.43 3.16
3376 4083 7.113658 AGTCTATGTTACTACCTCCACAATG 57.886 40.000 0.00 0.00 0.00 2.82
3377 4084 8.060075 ACTAGTCTATGTTACTACCTCCACAAT 58.940 37.037 0.00 0.00 0.00 2.71
3378 4085 7.408543 ACTAGTCTATGTTACTACCTCCACAA 58.591 38.462 0.00 0.00 0.00 3.33
3379 4086 6.966751 ACTAGTCTATGTTACTACCTCCACA 58.033 40.000 0.00 0.00 0.00 4.17
3380 4087 8.835439 GTTACTAGTCTATGTTACTACCTCCAC 58.165 40.741 0.00 0.00 0.00 4.02
3381 4088 8.551440 TGTTACTAGTCTATGTTACTACCTCCA 58.449 37.037 0.00 0.00 0.00 3.86
3382 4089 8.835439 GTGTTACTAGTCTATGTTACTACCTCC 58.165 40.741 0.00 0.00 0.00 4.30
3383 4090 9.388506 TGTGTTACTAGTCTATGTTACTACCTC 57.611 37.037 0.00 0.00 0.00 3.85
3384 4091 9.917887 ATGTGTTACTAGTCTATGTTACTACCT 57.082 33.333 0.00 0.00 0.00 3.08
3385 4092 9.947669 CATGTGTTACTAGTCTATGTTACTACC 57.052 37.037 0.00 0.00 0.00 3.18
3386 4093 9.448294 GCATGTGTTACTAGTCTATGTTACTAC 57.552 37.037 0.00 0.00 0.00 2.73
3387 4094 9.181061 TGCATGTGTTACTAGTCTATGTTACTA 57.819 33.333 0.00 0.00 0.00 1.82
3388 4095 8.063200 TGCATGTGTTACTAGTCTATGTTACT 57.937 34.615 0.00 0.00 0.00 2.24
3389 4096 8.755941 CATGCATGTGTTACTAGTCTATGTTAC 58.244 37.037 18.91 0.00 0.00 2.50
3390 4097 8.474831 ACATGCATGTGTTACTAGTCTATGTTA 58.525 33.333 30.92 0.00 40.03 2.41
3391 4098 7.331026 ACATGCATGTGTTACTAGTCTATGTT 58.669 34.615 30.92 0.00 40.03 2.71
3392 4099 6.878317 ACATGCATGTGTTACTAGTCTATGT 58.122 36.000 30.92 1.32 40.03 2.29
3393 4100 7.776933 AACATGCATGTGTTACTAGTCTATG 57.223 36.000 31.98 1.49 40.35 2.23
3403 4110 8.528643 ACTTAGACTAGTAACATGCATGTGTTA 58.471 33.333 31.98 19.60 42.08 2.41
3404 4111 7.386851 ACTTAGACTAGTAACATGCATGTGTT 58.613 34.615 31.98 20.66 44.09 3.32
3405 4112 6.936279 ACTTAGACTAGTAACATGCATGTGT 58.064 36.000 31.98 23.82 41.61 3.72
3406 4113 7.834068 AACTTAGACTAGTAACATGCATGTG 57.166 36.000 31.98 20.84 41.61 3.21
3407 4114 8.750298 AGTAACTTAGACTAGTAACATGCATGT 58.250 33.333 26.61 26.61 44.20 3.21
3410 4117 8.680903 GGTAGTAACTTAGACTAGTAACATGCA 58.319 37.037 0.00 0.00 30.08 3.96
3411 4118 8.134261 GGGTAGTAACTTAGACTAGTAACATGC 58.866 40.741 0.00 0.00 30.08 4.06
3412 4119 9.182214 TGGGTAGTAACTTAGACTAGTAACATG 57.818 37.037 0.00 0.00 30.08 3.21
3413 4120 9.933240 ATGGGTAGTAACTTAGACTAGTAACAT 57.067 33.333 0.00 0.00 30.08 2.71
3414 4121 9.759473 AATGGGTAGTAACTTAGACTAGTAACA 57.241 33.333 0.00 0.00 30.08 2.41
3416 4123 9.759473 ACAATGGGTAGTAACTTAGACTAGTAA 57.241 33.333 0.00 0.00 30.08 2.24
3417 4124 9.182214 CACAATGGGTAGTAACTTAGACTAGTA 57.818 37.037 0.00 0.00 30.08 1.82
3418 4125 7.892241 TCACAATGGGTAGTAACTTAGACTAGT 59.108 37.037 0.00 0.00 30.08 2.57
3419 4126 8.189460 GTCACAATGGGTAGTAACTTAGACTAG 58.811 40.741 0.00 0.00 30.08 2.57
3420 4127 7.892241 AGTCACAATGGGTAGTAACTTAGACTA 59.108 37.037 0.00 0.00 0.00 2.59
3421 4128 6.724905 AGTCACAATGGGTAGTAACTTAGACT 59.275 38.462 0.00 0.00 0.00 3.24
3422 4129 6.932947 AGTCACAATGGGTAGTAACTTAGAC 58.067 40.000 0.00 0.00 0.00 2.59
3423 4130 7.892241 ACTAGTCACAATGGGTAGTAACTTAGA 59.108 37.037 0.00 0.00 0.00 2.10
3424 4131 8.064336 ACTAGTCACAATGGGTAGTAACTTAG 57.936 38.462 0.00 0.00 0.00 2.18
3425 4132 7.892241 AGACTAGTCACAATGGGTAGTAACTTA 59.108 37.037 24.44 0.00 0.00 2.24
3426 4133 6.724905 AGACTAGTCACAATGGGTAGTAACTT 59.275 38.462 24.44 0.00 0.00 2.66
3427 4134 6.254522 AGACTAGTCACAATGGGTAGTAACT 58.745 40.000 24.44 0.00 0.00 2.24
3428 4135 6.527057 AGACTAGTCACAATGGGTAGTAAC 57.473 41.667 24.44 0.00 0.00 2.50
3429 4136 8.654485 TTTAGACTAGTCACAATGGGTAGTAA 57.346 34.615 24.44 7.10 0.00 2.24
3430 4137 8.692710 CATTTAGACTAGTCACAATGGGTAGTA 58.307 37.037 25.60 7.30 32.26 1.82
3431 4138 7.180408 ACATTTAGACTAGTCACAATGGGTAGT 59.820 37.037 31.04 18.20 36.43 2.73
3432 4139 7.556844 ACATTTAGACTAGTCACAATGGGTAG 58.443 38.462 31.04 17.75 36.43 3.18
3433 4140 7.490657 ACATTTAGACTAGTCACAATGGGTA 57.509 36.000 31.04 13.16 36.43 3.69
3434 4141 6.374417 ACATTTAGACTAGTCACAATGGGT 57.626 37.500 31.04 19.13 36.43 4.51
3435 4142 7.041780 GCATACATTTAGACTAGTCACAATGGG 60.042 40.741 31.04 24.60 36.43 4.00
3436 4143 7.041780 GGCATACATTTAGACTAGTCACAATGG 60.042 40.741 31.04 21.86 36.43 3.16
3437 4144 7.306807 CGGCATACATTTAGACTAGTCACAATG 60.307 40.741 28.67 28.67 37.33 2.82
3438 4145 6.701841 CGGCATACATTTAGACTAGTCACAAT 59.298 38.462 24.44 17.38 0.00 2.71
3439 4146 6.040247 CGGCATACATTTAGACTAGTCACAA 58.960 40.000 24.44 15.96 0.00 3.33
3440 4147 5.358725 TCGGCATACATTTAGACTAGTCACA 59.641 40.000 24.44 9.25 0.00 3.58
3441 4148 5.828747 TCGGCATACATTTAGACTAGTCAC 58.171 41.667 24.44 0.00 0.00 3.67
3442 4149 5.593095 ACTCGGCATACATTTAGACTAGTCA 59.407 40.000 24.44 8.16 0.00 3.41
3443 4150 6.074544 ACTCGGCATACATTTAGACTAGTC 57.925 41.667 15.41 15.41 0.00 2.59
3444 4151 6.016443 GGTACTCGGCATACATTTAGACTAGT 60.016 42.308 0.00 0.00 0.00 2.57
3445 4152 6.207025 AGGTACTCGGCATACATTTAGACTAG 59.793 42.308 0.00 0.00 0.00 2.57
3446 4153 6.066690 AGGTACTCGGCATACATTTAGACTA 58.933 40.000 0.00 0.00 0.00 2.59
3447 4154 4.894114 AGGTACTCGGCATACATTTAGACT 59.106 41.667 0.00 0.00 0.00 3.24
3448 4155 5.197682 AGGTACTCGGCATACATTTAGAC 57.802 43.478 0.00 0.00 0.00 2.59
3449 4156 6.964807 TTAGGTACTCGGCATACATTTAGA 57.035 37.500 0.00 0.00 41.75 2.10
3450 4157 8.428186 TTTTTAGGTACTCGGCATACATTTAG 57.572 34.615 0.00 0.00 41.75 1.85
3451 4158 8.832521 CATTTTTAGGTACTCGGCATACATTTA 58.167 33.333 0.00 0.00 41.75 1.40
3452 4159 7.201785 CCATTTTTAGGTACTCGGCATACATTT 60.202 37.037 0.00 0.00 41.75 2.32
3453 4160 6.262273 CCATTTTTAGGTACTCGGCATACATT 59.738 38.462 0.00 0.00 41.75 2.71
3454 4161 5.763204 CCATTTTTAGGTACTCGGCATACAT 59.237 40.000 0.00 0.00 41.75 2.29
3455 4162 5.120399 CCATTTTTAGGTACTCGGCATACA 58.880 41.667 0.00 0.00 41.75 2.29
3456 4163 4.024302 GCCATTTTTAGGTACTCGGCATAC 60.024 45.833 0.00 0.00 41.75 2.39
3457 4164 4.131596 GCCATTTTTAGGTACTCGGCATA 58.868 43.478 0.00 0.00 41.75 3.14
3458 4165 2.949644 GCCATTTTTAGGTACTCGGCAT 59.050 45.455 0.00 0.00 41.75 4.40
3459 4166 2.290387 TGCCATTTTTAGGTACTCGGCA 60.290 45.455 0.00 0.00 45.57 5.69
3460 4167 2.096980 GTGCCATTTTTAGGTACTCGGC 59.903 50.000 0.00 0.00 41.75 5.54
3465 4172 5.699097 TGTTGAGTGCCATTTTTAGGTAC 57.301 39.130 0.00 0.00 41.42 3.34
3466 4173 6.909550 AATGTTGAGTGCCATTTTTAGGTA 57.090 33.333 0.00 0.00 0.00 3.08
3467 4174 5.806654 AATGTTGAGTGCCATTTTTAGGT 57.193 34.783 0.00 0.00 0.00 3.08
3548 4255 9.632638 AGGCTATGAAAAAGAAGAAATATAGCA 57.367 29.630 0.00 0.00 41.97 3.49
3557 4264 9.574516 AGAAAGTAAAGGCTATGAAAAAGAAGA 57.425 29.630 0.00 0.00 0.00 2.87
3562 4269 9.227777 GGAGTAGAAAGTAAAGGCTATGAAAAA 57.772 33.333 0.00 0.00 0.00 1.94
3563 4270 7.827729 GGGAGTAGAAAGTAAAGGCTATGAAAA 59.172 37.037 0.00 0.00 0.00 2.29
3564 4271 7.336396 GGGAGTAGAAAGTAAAGGCTATGAAA 58.664 38.462 0.00 0.00 0.00 2.69
3565 4272 6.885922 GGGAGTAGAAAGTAAAGGCTATGAA 58.114 40.000 0.00 0.00 0.00 2.57
3566 4273 6.481434 GGGAGTAGAAAGTAAAGGCTATGA 57.519 41.667 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.