Multiple sequence alignment - TraesCS6D01G366400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G366400 chr6D 100.000 3430 0 0 1 3430 454928015 454924586 0.000000e+00 6335.0
1 TraesCS6D01G366400 chr6D 85.388 1314 151 17 1104 2393 454734225 454735521 0.000000e+00 1325.0
2 TraesCS6D01G366400 chr6D 75.718 1079 202 40 1164 2224 454749441 454748405 1.430000e-133 486.0
3 TraesCS6D01G366400 chr6D 80.126 478 67 20 2959 3427 404194349 404194807 7.100000e-87 331.0
4 TraesCS6D01G366400 chr6D 78.857 525 85 15 2911 3427 404215748 404216254 7.100000e-87 331.0
5 TraesCS6D01G366400 chr6D 93.277 119 8 0 1613 1731 456252360 456252478 3.520000e-40 176.0
6 TraesCS6D01G366400 chr6D 87.619 105 13 0 1164 1268 456251656 456251760 4.650000e-24 122.0
7 TraesCS6D01G366400 chr6D 80.220 91 17 1 13 103 1369889 1369800 2.210000e-07 67.6
8 TraesCS6D01G366400 chr6A 89.428 2516 198 34 109 2574 601212949 601210452 0.000000e+00 3110.0
9 TraesCS6D01G366400 chr6A 84.498 1316 147 27 1102 2393 601166365 601165083 0.000000e+00 1247.0
10 TraesCS6D01G366400 chr6A 82.375 539 57 17 2897 3430 601210451 601209946 5.260000e-118 435.0
11 TraesCS6D01G366400 chr6A 82.692 468 65 10 316 771 31058955 31058492 5.330000e-108 401.0
12 TraesCS6D01G366400 chr6A 88.554 332 35 1 2565 2893 610392297 610391966 1.920000e-107 399.0
13 TraesCS6D01G366400 chr6A 77.607 585 95 26 1164 1726 600913347 600912777 4.270000e-84 322.0
14 TraesCS6D01G366400 chr6A 74.831 592 114 28 1164 1731 600978115 600977535 5.720000e-58 235.0
15 TraesCS6D01G366400 chr6B 87.603 1573 134 28 857 2383 692017121 692015564 0.000000e+00 1768.0
16 TraesCS6D01G366400 chr6B 84.475 1314 148 28 1104 2393 691795269 691793988 0.000000e+00 1245.0
17 TraesCS6D01G366400 chr6B 78.611 907 139 34 1343 2224 691633199 691632323 1.800000e-152 549.0
18 TraesCS6D01G366400 chr6B 76.027 584 98 30 1164 1726 691783807 691783245 7.300000e-67 265.0
19 TraesCS6D01G366400 chr6B 86.842 190 16 4 315 495 692727515 692727704 1.610000e-48 204.0
20 TraesCS6D01G366400 chr6B 88.710 62 7 0 39 100 454066935 454066996 3.670000e-10 76.8
21 TraesCS6D01G366400 chr6B 91.667 48 4 0 56 103 707617276 707617229 2.210000e-07 67.6
22 TraesCS6D01G366400 chr6B 91.667 48 4 0 56 103 707667489 707667442 2.210000e-07 67.6
23 TraesCS6D01G366400 chr2B 90.769 325 29 1 2567 2891 715925188 715925511 1.890000e-117 433.0
24 TraesCS6D01G366400 chr2B 83.617 470 63 8 315 773 736388618 736388152 2.450000e-116 429.0
25 TraesCS6D01G366400 chr2B 83.262 466 60 14 316 768 593662419 593662879 2.460000e-111 412.0
26 TraesCS6D01G366400 chr2B 82.655 467 60 17 319 771 182573 182114 8.920000e-106 394.0
27 TraesCS6D01G366400 chr2B 82.105 475 67 12 312 773 719299095 719298626 1.150000e-104 390.0
28 TraesCS6D01G366400 chr2B 89.655 58 6 0 43 100 727310562 727310619 1.320000e-09 75.0
29 TraesCS6D01G366400 chr2B 91.667 48 4 0 53 100 162860699 162860746 2.210000e-07 67.6
30 TraesCS6D01G366400 chr3A 90.244 328 32 0 2568 2895 251325287 251325614 2.450000e-116 429.0
31 TraesCS6D01G366400 chr7B 83.475 472 60 12 315 773 113206821 113207287 1.140000e-114 424.0
32 TraesCS6D01G366400 chr7B 82.911 474 62 12 314 773 742229757 742229289 3.190000e-110 409.0
33 TraesCS6D01G366400 chr7B 79.691 453 72 16 318 758 718786966 718786522 3.320000e-80 309.0
34 TraesCS6D01G366400 chr3B 88.485 330 35 3 2568 2895 279652343 279652671 2.480000e-106 396.0
35 TraesCS6D01G366400 chr3B 81.043 422 61 15 316 725 795911269 795911683 5.520000e-83 318.0
36 TraesCS6D01G366400 chr3B 87.097 62 8 0 39 100 819289093 819289154 1.710000e-08 71.3
37 TraesCS6D01G366400 chr2D 88.485 330 34 3 2569 2897 578922582 578922908 2.480000e-106 396.0
38 TraesCS6D01G366400 chr2D 87.385 325 38 3 2571 2895 585785501 585785180 1.500000e-98 370.0
39 TraesCS6D01G366400 chr5D 82.415 472 64 13 315 773 358597567 358597102 8.920000e-106 394.0
40 TraesCS6D01G366400 chr5B 88.308 325 35 3 2568 2891 81787442 81787764 1.490000e-103 387.0
41 TraesCS6D01G366400 chr5B 78.906 256 50 3 3178 3430 501358818 501359072 1.640000e-38 171.0
42 TraesCS6D01G366400 chr3D 88.474 321 33 3 2571 2891 437022187 437021871 5.370000e-103 385.0
43 TraesCS6D01G366400 chr3D 86.145 166 20 3 2903 3066 558570413 558570249 3.520000e-40 176.0
44 TraesCS6D01G366400 chr7D 81.760 466 71 7 319 773 107676242 107676704 8.990000e-101 377.0
45 TraesCS6D01G366400 chr7D 80.338 473 71 18 316 773 79975457 79974992 4.240000e-89 339.0
46 TraesCS6D01G366400 chr7A 87.346 324 41 0 2568 2891 727508613 727508936 4.180000e-99 372.0
47 TraesCS6D01G366400 chr7A 80.702 285 42 9 315 588 93493033 93493315 3.470000e-50 209.0
48 TraesCS6D01G366400 chr1B 82.057 457 63 15 315 758 635437039 635436589 4.180000e-99 372.0
49 TraesCS6D01G366400 chr1B 83.832 167 24 3 2903 3067 539467720 539467555 4.580000e-34 156.0
50 TraesCS6D01G366400 chr4B 77.589 531 98 15 2904 3430 472141558 472141045 5.560000e-78 302.0
51 TraesCS6D01G366400 chr4B 95.000 40 2 0 64 103 520922539 520922500 2.860000e-06 63.9
52 TraesCS6D01G366400 chr2A 75.094 534 87 25 2905 3430 771350037 771349542 1.250000e-49 207.0
53 TraesCS6D01G366400 chr1A 90.598 117 11 0 3314 3430 550899340 550899456 4.580000e-34 156.0
54 TraesCS6D01G366400 chr4A 85.366 82 12 0 3313 3394 641609181 641609100 6.100000e-13 86.1
55 TraesCS6D01G366400 chr4D 87.097 62 8 0 39 100 503348542 503348603 1.710000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G366400 chr6D 454924586 454928015 3429 True 6335.0 6335 100.0000 1 3430 1 chr6D.!!$R3 3429
1 TraesCS6D01G366400 chr6D 454734225 454735521 1296 False 1325.0 1325 85.3880 1104 2393 1 chr6D.!!$F3 1289
2 TraesCS6D01G366400 chr6D 454748405 454749441 1036 True 486.0 486 75.7180 1164 2224 1 chr6D.!!$R2 1060
3 TraesCS6D01G366400 chr6D 404215748 404216254 506 False 331.0 331 78.8570 2911 3427 1 chr6D.!!$F2 516
4 TraesCS6D01G366400 chr6A 601209946 601212949 3003 True 1772.5 3110 85.9015 109 3430 2 chr6A.!!$R6 3321
5 TraesCS6D01G366400 chr6A 601165083 601166365 1282 True 1247.0 1247 84.4980 1102 2393 1 chr6A.!!$R4 1291
6 TraesCS6D01G366400 chr6A 600912777 600913347 570 True 322.0 322 77.6070 1164 1726 1 chr6A.!!$R2 562
7 TraesCS6D01G366400 chr6A 600977535 600978115 580 True 235.0 235 74.8310 1164 1731 1 chr6A.!!$R3 567
8 TraesCS6D01G366400 chr6B 692015564 692017121 1557 True 1768.0 1768 87.6030 857 2383 1 chr6B.!!$R4 1526
9 TraesCS6D01G366400 chr6B 691793988 691795269 1281 True 1245.0 1245 84.4750 1104 2393 1 chr6B.!!$R3 1289
10 TraesCS6D01G366400 chr6B 691632323 691633199 876 True 549.0 549 78.6110 1343 2224 1 chr6B.!!$R1 881
11 TraesCS6D01G366400 chr6B 691783245 691783807 562 True 265.0 265 76.0270 1164 1726 1 chr6B.!!$R2 562
12 TraesCS6D01G366400 chr4B 472141045 472141558 513 True 302.0 302 77.5890 2904 3430 1 chr4B.!!$R1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.519961 AAAGGCAATTACGGTGTCGC 59.480 50.0 0.0 0.0 40.63 5.19 F
553 569 0.542333 GAAGGGGAAGACCTACCTGC 59.458 60.0 0.0 0.0 40.87 4.85 F
1581 1683 0.037326 TGGAGCACTTACTTGCCTCG 60.037 55.0 0.0 0.0 44.14 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1291 1358 0.552848 ATGGGATGGAAATGCGAGGT 59.447 50.0 0.00 0.00 0.0 3.85 R
1847 1977 0.736325 ATAGGTTCTGCGCACGACAC 60.736 55.0 5.66 9.24 0.0 3.67 R
2601 2747 0.024491 CTCGAATTTTAGCGCGCGAA 59.976 50.0 37.18 25.07 0.0 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.196372 TTTTTGGCCTGCCTCTGG 57.804 55.556 9.97 0.00 36.94 3.86
39 40 2.175236 GCCTCTGGCGAAGAAAAGG 58.825 57.895 0.00 0.00 39.62 3.11
40 41 1.927608 GCCTCTGGCGAAGAAAAGGC 61.928 60.000 0.00 0.00 39.62 4.35
41 42 0.606401 CCTCTGGCGAAGAAAAGGCA 60.606 55.000 0.00 0.00 40.70 4.75
42 43 1.238439 CTCTGGCGAAGAAAAGGCAA 58.762 50.000 0.00 0.00 42.35 4.52
43 44 1.815003 CTCTGGCGAAGAAAAGGCAAT 59.185 47.619 0.00 0.00 42.35 3.56
44 45 2.229784 CTCTGGCGAAGAAAAGGCAATT 59.770 45.455 0.00 0.00 42.35 2.32
45 46 3.417101 TCTGGCGAAGAAAAGGCAATTA 58.583 40.909 0.00 0.00 42.35 1.40
46 47 3.190535 TCTGGCGAAGAAAAGGCAATTAC 59.809 43.478 0.00 0.00 42.35 1.89
47 48 2.095466 TGGCGAAGAAAAGGCAATTACG 60.095 45.455 0.00 0.00 40.02 3.18
48 49 2.515912 GCGAAGAAAAGGCAATTACGG 58.484 47.619 0.00 0.00 0.00 4.02
49 50 2.095415 GCGAAGAAAAGGCAATTACGGT 60.095 45.455 0.00 0.00 0.00 4.83
50 51 3.488489 CGAAGAAAAGGCAATTACGGTG 58.512 45.455 0.00 0.00 0.00 4.94
51 52 3.058501 CGAAGAAAAGGCAATTACGGTGT 60.059 43.478 0.00 0.00 0.00 4.16
52 53 4.473199 GAAGAAAAGGCAATTACGGTGTC 58.527 43.478 0.00 0.00 0.00 3.67
53 54 2.482721 AGAAAAGGCAATTACGGTGTCG 59.517 45.455 0.00 0.00 43.02 4.35
54 55 0.519961 AAAGGCAATTACGGTGTCGC 59.480 50.000 0.00 0.00 40.63 5.19
55 56 1.632046 AAGGCAATTACGGTGTCGCG 61.632 55.000 0.00 0.00 40.63 5.87
56 57 2.276430 GCAATTACGGTGTCGCGC 60.276 61.111 0.00 0.00 40.63 6.86
57 58 2.398036 CAATTACGGTGTCGCGCC 59.602 61.111 0.00 0.00 40.63 6.53
58 59 2.098233 CAATTACGGTGTCGCGCCT 61.098 57.895 0.00 0.00 40.63 5.52
59 60 1.375013 AATTACGGTGTCGCGCCTT 60.375 52.632 0.00 0.00 40.63 4.35
60 61 1.356527 AATTACGGTGTCGCGCCTTC 61.357 55.000 0.00 0.00 40.63 3.46
61 62 2.495366 ATTACGGTGTCGCGCCTTCA 62.495 55.000 0.00 0.00 40.63 3.02
62 63 2.696409 TTACGGTGTCGCGCCTTCAA 62.696 55.000 0.00 0.00 40.63 2.69
63 64 4.072088 CGGTGTCGCGCCTTCAAC 62.072 66.667 0.00 0.00 0.00 3.18
64 65 2.665185 GGTGTCGCGCCTTCAACT 60.665 61.111 0.00 0.00 0.00 3.16
65 66 2.668280 GGTGTCGCGCCTTCAACTC 61.668 63.158 0.00 0.00 0.00 3.01
66 67 2.733218 TGTCGCGCCTTCAACTCG 60.733 61.111 0.00 0.00 0.00 4.18
67 68 4.135493 GTCGCGCCTTCAACTCGC 62.135 66.667 0.00 0.00 44.76 5.03
68 69 4.357947 TCGCGCCTTCAACTCGCT 62.358 61.111 0.00 0.00 45.87 4.93
69 70 3.414700 CGCGCCTTCAACTCGCTT 61.415 61.111 0.00 0.00 45.87 4.68
70 71 2.476499 GCGCCTTCAACTCGCTTC 59.524 61.111 0.00 0.00 44.79 3.86
71 72 2.317609 GCGCCTTCAACTCGCTTCA 61.318 57.895 0.00 0.00 44.79 3.02
72 73 1.639298 GCGCCTTCAACTCGCTTCAT 61.639 55.000 0.00 0.00 44.79 2.57
73 74 0.798776 CGCCTTCAACTCGCTTCATT 59.201 50.000 0.00 0.00 0.00 2.57
74 75 1.464687 CGCCTTCAACTCGCTTCATTG 60.465 52.381 0.00 0.00 0.00 2.82
75 76 1.730446 GCCTTCAACTCGCTTCATTGC 60.730 52.381 0.00 0.00 0.00 3.56
76 77 1.808945 CCTTCAACTCGCTTCATTGCT 59.191 47.619 0.00 0.00 0.00 3.91
77 78 2.227388 CCTTCAACTCGCTTCATTGCTT 59.773 45.455 0.00 0.00 0.00 3.91
78 79 2.975410 TCAACTCGCTTCATTGCTTG 57.025 45.000 0.00 0.00 0.00 4.01
79 80 2.221169 TCAACTCGCTTCATTGCTTGT 58.779 42.857 0.00 0.00 0.00 3.16
80 81 3.398406 TCAACTCGCTTCATTGCTTGTA 58.602 40.909 0.00 0.00 0.00 2.41
81 82 3.433274 TCAACTCGCTTCATTGCTTGTAG 59.567 43.478 0.00 0.00 0.00 2.74
82 83 3.045601 ACTCGCTTCATTGCTTGTAGT 57.954 42.857 0.00 0.00 0.00 2.73
83 84 2.996621 ACTCGCTTCATTGCTTGTAGTC 59.003 45.455 0.00 0.00 0.00 2.59
84 85 1.992667 TCGCTTCATTGCTTGTAGTCG 59.007 47.619 0.00 0.00 0.00 4.18
85 86 1.726791 CGCTTCATTGCTTGTAGTCGT 59.273 47.619 0.00 0.00 0.00 4.34
86 87 2.222596 CGCTTCATTGCTTGTAGTCGTC 60.223 50.000 0.00 0.00 0.00 4.20
87 88 2.222596 GCTTCATTGCTTGTAGTCGTCG 60.223 50.000 0.00 0.00 0.00 5.12
88 89 1.346365 TCATTGCTTGTAGTCGTCGC 58.654 50.000 0.00 0.00 0.00 5.19
89 90 1.067846 TCATTGCTTGTAGTCGTCGCT 60.068 47.619 0.00 0.00 0.00 4.93
90 91 2.162809 TCATTGCTTGTAGTCGTCGCTA 59.837 45.455 0.00 0.00 0.00 4.26
91 92 2.257974 TTGCTTGTAGTCGTCGCTAG 57.742 50.000 0.00 0.00 0.00 3.42
92 93 1.445871 TGCTTGTAGTCGTCGCTAGA 58.554 50.000 0.00 0.00 0.00 2.43
93 94 2.014857 TGCTTGTAGTCGTCGCTAGAT 58.985 47.619 0.00 0.00 0.00 1.98
94 95 2.223272 TGCTTGTAGTCGTCGCTAGATG 60.223 50.000 0.00 0.00 34.75 2.90
95 96 2.855187 GCTTGTAGTCGTCGCTAGATGG 60.855 54.545 0.00 0.00 34.23 3.51
96 97 2.034104 TGTAGTCGTCGCTAGATGGT 57.966 50.000 0.00 0.00 34.23 3.55
97 98 1.938577 TGTAGTCGTCGCTAGATGGTC 59.061 52.381 0.00 0.00 34.23 4.02
98 99 2.211806 GTAGTCGTCGCTAGATGGTCT 58.788 52.381 0.00 0.00 34.23 3.85
99 100 2.616634 AGTCGTCGCTAGATGGTCTA 57.383 50.000 0.00 0.00 34.23 2.59
101 102 1.532007 GTCGTCGCTAGATGGTCTAGG 59.468 57.143 14.05 6.26 45.03 3.02
106 107 1.634960 GCTAGATGGTCTAGGGGGAC 58.365 60.000 14.05 0.00 45.03 4.46
107 108 1.133136 GCTAGATGGTCTAGGGGGACA 60.133 57.143 14.05 0.00 45.03 4.02
121 122 1.270550 GGGGACAAAGCATGAACAGTG 59.729 52.381 0.00 0.00 0.00 3.66
135 136 7.495279 AGCATGAACAGTGCAAAAAGATAAAAA 59.505 29.630 0.00 0.00 44.87 1.94
206 208 8.352137 TCACATGTGACTTGAATATGGATTTT 57.648 30.769 24.56 0.00 34.14 1.82
207 209 8.461222 TCACATGTGACTTGAATATGGATTTTC 58.539 33.333 24.56 0.00 34.14 2.29
210 212 9.865321 CATGTGACTTGAATATGGATTTTCTTT 57.135 29.630 0.00 0.00 0.00 2.52
211 213 9.865321 ATGTGACTTGAATATGGATTTTCTTTG 57.135 29.630 0.00 0.00 0.00 2.77
212 214 8.306038 TGTGACTTGAATATGGATTTTCTTTGG 58.694 33.333 0.00 0.00 0.00 3.28
213 215 7.276438 GTGACTTGAATATGGATTTTCTTTGGC 59.724 37.037 0.00 0.00 0.00 4.52
214 216 6.643388 ACTTGAATATGGATTTTCTTTGGCC 58.357 36.000 0.00 0.00 0.00 5.36
216 218 6.224665 TGAATATGGATTTTCTTTGGCCTG 57.775 37.500 3.32 0.00 0.00 4.85
217 219 4.677673 ATATGGATTTTCTTTGGCCTGC 57.322 40.909 3.32 0.00 0.00 4.85
218 220 0.975887 TGGATTTTCTTTGGCCTGCC 59.024 50.000 3.32 0.00 0.00 4.85
219 221 1.269958 GGATTTTCTTTGGCCTGCCT 58.730 50.000 9.97 0.00 36.94 4.75
235 243 4.511636 CTCTGGCGAAGAAGAGGC 57.488 61.111 0.00 0.00 36.58 4.70
241 249 3.118261 TCTGGCGAAGAAGAGGCAATTAT 60.118 43.478 0.00 0.00 42.35 1.28
251 259 1.298339 GGCAATTATGGTGTCGCGC 60.298 57.895 0.00 0.00 0.00 6.86
256 264 1.151777 ATTATGGTGTCGCGCCTTCG 61.152 55.000 0.00 0.00 34.70 3.79
270 278 1.714794 CCTTCGACTCGCTTCATTGT 58.285 50.000 0.00 0.00 0.00 2.71
276 284 4.052608 TCGACTCGCTTCATTGTTTGTAA 58.947 39.130 0.00 0.00 0.00 2.41
279 287 5.296813 ACTCGCTTCATTGTTTGTAATCC 57.703 39.130 0.00 0.00 0.00 3.01
281 289 5.122396 ACTCGCTTCATTGTTTGTAATCCTC 59.878 40.000 0.00 0.00 0.00 3.71
282 290 5.000591 TCGCTTCATTGTTTGTAATCCTCA 58.999 37.500 0.00 0.00 0.00 3.86
290 298 5.160607 TGTTTGTAATCCTCACTAGGTGG 57.839 43.478 0.00 0.00 44.09 4.61
292 300 5.176592 GTTTGTAATCCTCACTAGGTGGTC 58.823 45.833 0.00 0.00 44.09 4.02
305 313 4.440145 TGGTCTACGGTACCACCC 57.560 61.111 13.54 4.14 42.10 4.61
316 324 2.288395 CGGTACCACCCGTAACATATCC 60.288 54.545 13.54 0.00 43.07 2.59
324 332 2.545113 CCCGTAACATATCCGTCACCTG 60.545 54.545 0.00 0.00 0.00 4.00
325 333 2.124903 CGTAACATATCCGTCACCTGC 58.875 52.381 0.00 0.00 0.00 4.85
334 342 2.022129 CGTCACCTGCCTTCGACAC 61.022 63.158 0.00 0.00 0.00 3.67
337 345 1.003355 CACCTGCCTTCGACACCAT 60.003 57.895 0.00 0.00 0.00 3.55
349 357 1.134699 CGACACCATCACAGTAGCCAT 60.135 52.381 0.00 0.00 0.00 4.40
351 359 1.908619 ACACCATCACAGTAGCCATCA 59.091 47.619 0.00 0.00 0.00 3.07
352 360 2.093288 ACACCATCACAGTAGCCATCAG 60.093 50.000 0.00 0.00 0.00 2.90
353 361 2.169144 CACCATCACAGTAGCCATCAGA 59.831 50.000 0.00 0.00 0.00 3.27
413 421 2.093310 CGGCTTCATCGCTAATATGCAG 59.907 50.000 0.00 0.00 0.00 4.41
426 434 1.026182 TATGCAGCTTTGCGGACCTG 61.026 55.000 0.00 0.00 37.69 4.00
452 467 1.068333 CCAAAGGTGAAGCCATTGACG 60.068 52.381 3.19 0.00 45.93 4.35
465 480 3.736213 CCATTGACGTTGAACGAATCAG 58.264 45.455 25.62 10.50 46.05 2.90
467 482 4.093408 CCATTGACGTTGAACGAATCAGAT 59.907 41.667 25.62 11.16 46.05 2.90
470 485 3.168963 GACGTTGAACGAATCAGATCGA 58.831 45.455 25.62 0.00 46.05 3.59
471 486 3.571571 ACGTTGAACGAATCAGATCGAA 58.428 40.909 25.62 0.00 46.05 3.71
499 514 1.305219 CCGGACACGCCATCACAAAT 61.305 55.000 0.00 0.00 39.22 2.32
503 518 1.812571 GACACGCCATCACAAATTCCT 59.187 47.619 0.00 0.00 0.00 3.36
504 519 1.541147 ACACGCCATCACAAATTCCTG 59.459 47.619 0.00 0.00 0.00 3.86
514 529 1.145738 ACAAATTCCTGGTCTGGCACT 59.854 47.619 0.00 0.00 0.00 4.40
530 545 1.669211 GCACTCCACCACGACTAAGAC 60.669 57.143 0.00 0.00 0.00 3.01
553 569 0.542333 GAAGGGGAAGACCTACCTGC 59.458 60.000 0.00 0.00 40.87 4.85
580 596 1.072489 TCAACCACGAACCCAGCATAA 59.928 47.619 0.00 0.00 0.00 1.90
592 608 3.081804 CCCAGCATAAGTTCGGTCTTTT 58.918 45.455 0.00 0.00 0.00 2.27
618 634 2.217393 GTCGTCGATGCAGATCACAATC 59.783 50.000 0.00 0.00 0.00 2.67
653 670 1.153549 CTACCTCCAAGCTCCACGC 60.154 63.158 0.00 0.00 39.57 5.34
676 693 2.580815 CTGGAGCAGACGCCATCA 59.419 61.111 0.00 0.00 45.48 3.07
684 701 2.108514 AGACGCCATCACAATGCCG 61.109 57.895 0.00 0.00 39.50 5.69
719 736 2.332063 AGTCCACCATAAAGATGCCG 57.668 50.000 0.00 0.00 0.00 5.69
749 766 5.877012 GCTCCAACATCTCTATTTGAACAGA 59.123 40.000 0.00 0.00 0.00 3.41
756 773 7.227156 ACATCTCTATTTGAACAGACTGGTTT 58.773 34.615 7.51 0.00 0.00 3.27
758 775 5.926542 TCTCTATTTGAACAGACTGGTTTCG 59.073 40.000 7.51 0.00 0.00 3.46
787 804 2.292569 TCACCGATCGTATACTCCAAGC 59.707 50.000 15.09 0.00 0.00 4.01
834 851 0.742281 CGAGGCATCCAGTCCACAAG 60.742 60.000 0.00 0.00 0.00 3.16
845 862 2.279851 CCACAAGACACGCGGACA 60.280 61.111 12.47 0.00 0.00 4.02
867 884 1.248785 TAGTCGGCGAGCCAAAGTCT 61.249 55.000 11.20 3.41 35.37 3.24
874 891 2.349297 CGAGCCAAAGTCTTACTCGT 57.651 50.000 17.84 0.00 43.85 4.18
884 901 1.328374 GTCTTACTCGTCGAGCTCTCC 59.672 57.143 22.00 4.28 32.04 3.71
924 945 8.723777 CATGACATCATGCATGACTAATTAAC 57.276 34.615 30.92 15.76 45.92 2.01
925 946 7.263100 TGACATCATGCATGACTAATTAACC 57.737 36.000 30.92 12.72 40.03 2.85
991 1023 0.880278 GTGTGCGTGCTCCTCTTCAA 60.880 55.000 0.00 0.00 0.00 2.69
994 1035 1.129437 GTGCGTGCTCCTCTTCAATTC 59.871 52.381 0.00 0.00 0.00 2.17
1043 1084 0.956902 TACGCACTGGCTCACGTCTA 60.957 55.000 0.00 0.00 39.78 2.59
1045 1086 1.344942 CGCACTGGCTCACGTCTAAC 61.345 60.000 0.00 0.00 38.10 2.34
1050 1091 1.405821 CTGGCTCACGTCTAACCCTAG 59.594 57.143 0.00 0.00 0.00 3.02
1291 1358 2.782222 GCGTCGGTCCATCCAGCTA 61.782 63.158 0.00 0.00 35.57 3.32
1292 1359 1.065928 CGTCGGTCCATCCAGCTAC 59.934 63.158 0.00 0.00 35.57 3.58
1334 1406 4.202151 GGCTTGACTGACTGGTTCAATTTT 60.202 41.667 0.00 0.00 32.21 1.82
1369 1441 1.439365 CAAGAACGCGCACTTGCTC 60.439 57.895 24.76 5.31 37.32 4.26
1581 1683 0.037326 TGGAGCACTTACTTGCCTCG 60.037 55.000 0.00 0.00 44.14 4.63
1602 1706 1.529948 TGCTTGCTTGCAGGAGCTT 60.530 52.632 16.84 0.00 43.11 3.74
1692 1796 1.617357 GTGTTCACTTCCTCCTACGGT 59.383 52.381 0.00 0.00 0.00 4.83
1821 1950 1.000171 CTTTCTTCCCAAGTTGGCAGC 60.000 52.381 17.07 0.00 35.79 5.25
1847 1977 2.427575 CGCACCGATCGATCCTCG 60.428 66.667 18.66 9.84 42.10 4.63
1865 2003 1.372499 GTGTCGTGCGCAGAACCTA 60.372 57.895 12.22 0.00 0.00 3.08
1880 2018 0.251916 ACCTATACTGCTGCGCCAAA 59.748 50.000 4.18 0.00 0.00 3.28
1940 2084 4.357279 GGGCTGGAGCTGGCAGTT 62.357 66.667 17.16 10.61 41.70 3.16
2114 2258 0.607217 TCGTCTACGAGCACCCTGAA 60.607 55.000 0.14 0.00 44.22 3.02
2500 2646 2.276617 CAACGGCAATAGCGCACG 60.277 61.111 11.47 6.63 43.41 5.34
2521 2667 6.480320 GCACGGTGATATCCAAATCCTATATC 59.520 42.308 13.29 0.00 34.55 1.63
2524 2670 7.403231 ACGGTGATATCCAAATCCTATATCCTT 59.597 37.037 0.00 0.00 33.51 3.36
2549 2695 9.930158 TTTATACCTAAATAAAGGCATTCCTGT 57.070 29.630 0.00 0.00 43.40 4.00
2551 2697 6.079712 ACCTAAATAAAGGCATTCCTGTCT 57.920 37.500 0.00 0.00 43.40 3.41
2571 2717 7.383572 CCTGTCTGATTCTCAATAATCGGTTAG 59.616 40.741 0.00 0.00 41.23 2.34
2574 2720 7.115663 GTCTGATTCTCAATAATCGGTTAGAGC 59.884 40.741 0.00 0.00 41.23 4.09
2575 2721 6.816136 TGATTCTCAATAATCGGTTAGAGCA 58.184 36.000 0.00 0.00 38.47 4.26
2576 2722 7.445121 TGATTCTCAATAATCGGTTAGAGCAT 58.555 34.615 0.00 0.00 38.47 3.79
2577 2723 7.600375 TGATTCTCAATAATCGGTTAGAGCATC 59.400 37.037 9.11 9.11 38.47 3.91
2589 2735 1.427020 GAGCATCTTCAACAGGCGC 59.573 57.895 0.00 0.00 0.00 6.53
2590 2736 1.300971 GAGCATCTTCAACAGGCGCA 61.301 55.000 10.83 0.00 0.00 6.09
2591 2737 1.154150 GCATCTTCAACAGGCGCAC 60.154 57.895 10.83 0.00 0.00 5.34
2592 2738 1.855213 GCATCTTCAACAGGCGCACA 61.855 55.000 10.83 0.00 0.00 4.57
2593 2739 0.592637 CATCTTCAACAGGCGCACAA 59.407 50.000 10.83 0.00 0.00 3.33
2594 2740 1.001487 CATCTTCAACAGGCGCACAAA 60.001 47.619 10.83 0.00 0.00 2.83
2595 2741 1.098869 TCTTCAACAGGCGCACAAAA 58.901 45.000 10.83 0.00 0.00 2.44
2596 2742 1.474478 TCTTCAACAGGCGCACAAAAA 59.526 42.857 10.83 0.00 0.00 1.94
2597 2743 1.587946 CTTCAACAGGCGCACAAAAAC 59.412 47.619 10.83 0.00 0.00 2.43
2598 2744 0.814457 TCAACAGGCGCACAAAAACT 59.186 45.000 10.83 0.00 0.00 2.66
2599 2745 0.922717 CAACAGGCGCACAAAAACTG 59.077 50.000 10.83 7.96 35.40 3.16
2600 2746 0.530288 AACAGGCGCACAAAAACTGT 59.470 45.000 10.83 8.70 43.61 3.55
2601 2747 0.530288 ACAGGCGCACAAAAACTGTT 59.470 45.000 10.83 0.00 39.16 3.16
2602 2748 1.067213 ACAGGCGCACAAAAACTGTTT 60.067 42.857 10.83 0.00 39.16 2.83
2603 2749 1.587946 CAGGCGCACAAAAACTGTTTC 59.412 47.619 10.83 0.00 35.47 2.78
2604 2750 0.570272 GGCGCACAAAAACTGTTTCG 59.430 50.000 10.83 6.59 35.47 3.46
2605 2751 0.044246 GCGCACAAAAACTGTTTCGC 60.044 50.000 16.68 16.68 44.75 4.70
2606 2752 0.223513 CGCACAAAAACTGTTTCGCG 59.776 50.000 18.11 18.11 35.47 5.87
2607 2753 0.044246 GCACAAAAACTGTTTCGCGC 60.044 50.000 6.20 0.00 35.47 6.86
2608 2754 0.223513 CACAAAAACTGTTTCGCGCG 59.776 50.000 26.76 26.76 35.47 6.86
2609 2755 1.195746 CAAAAACTGTTTCGCGCGC 59.804 52.632 27.95 23.91 0.00 6.86
2610 2756 1.063488 AAAAACTGTTTCGCGCGCT 59.937 47.368 30.48 4.97 0.00 5.92
2611 2757 0.305313 AAAAACTGTTTCGCGCGCTA 59.695 45.000 30.48 17.01 0.00 4.26
2612 2758 0.305313 AAAACTGTTTCGCGCGCTAA 59.695 45.000 30.48 22.72 0.00 3.09
2613 2759 0.305313 AAACTGTTTCGCGCGCTAAA 59.695 45.000 30.48 27.36 0.00 1.85
2614 2760 0.305313 AACTGTTTCGCGCGCTAAAA 59.695 45.000 29.00 24.31 0.00 1.52
2615 2761 0.515564 ACTGTTTCGCGCGCTAAAAT 59.484 45.000 29.00 16.43 0.00 1.82
2616 2762 1.069500 ACTGTTTCGCGCGCTAAAATT 60.069 42.857 29.00 15.09 0.00 1.82
2617 2763 1.573156 CTGTTTCGCGCGCTAAAATTC 59.427 47.619 29.00 18.51 0.00 2.17
2618 2764 0.555324 GTTTCGCGCGCTAAAATTCG 59.445 50.000 29.00 11.96 0.00 3.34
2619 2765 0.439214 TTTCGCGCGCTAAAATTCGA 59.561 45.000 30.48 13.45 0.00 3.71
2620 2766 0.024491 TTCGCGCGCTAAAATTCGAG 59.976 50.000 30.48 9.37 0.00 4.04
2621 2767 1.074319 TCGCGCGCTAAAATTCGAGT 61.074 50.000 30.48 0.00 0.00 4.18
2622 2768 0.247145 CGCGCGCTAAAATTCGAGTT 60.247 50.000 30.48 0.00 0.00 3.01
2623 2769 1.785518 CGCGCGCTAAAATTCGAGTTT 60.786 47.619 30.48 0.00 0.00 2.66
2624 2770 2.239201 GCGCGCTAAAATTCGAGTTTT 58.761 42.857 26.67 20.42 35.60 2.43
2625 2771 2.655001 GCGCGCTAAAATTCGAGTTTTT 59.345 40.909 26.67 15.99 33.62 1.94
2639 2785 3.849064 TTTTTGGGTGCCGGACAG 58.151 55.556 5.05 0.00 0.00 3.51
2640 2786 2.494530 TTTTTGGGTGCCGGACAGC 61.495 57.895 5.05 12.82 46.36 4.40
2641 2787 2.920076 TTTTTGGGTGCCGGACAGCT 62.920 55.000 21.60 0.00 46.30 4.24
2642 2788 3.842925 TTTGGGTGCCGGACAGCTC 62.843 63.158 21.60 14.64 46.30 4.09
2645 2791 4.767255 GGTGCCGGACAGCTCCAG 62.767 72.222 5.05 0.00 44.17 3.86
2649 2795 3.385384 CCGGACAGCTCCAGCAGA 61.385 66.667 0.00 0.00 45.16 4.26
2650 2796 2.659016 CGGACAGCTCCAGCAGAA 59.341 61.111 0.48 0.00 45.16 3.02
2651 2797 1.447489 CGGACAGCTCCAGCAGAAG 60.447 63.158 0.48 0.00 45.16 2.85
2652 2798 1.744741 GGACAGCTCCAGCAGAAGC 60.745 63.158 0.48 0.00 45.16 3.86
2666 2812 4.685169 GCAGAAGCTGTAAAATAGTGCA 57.315 40.909 0.00 0.00 37.91 4.57
2667 2813 4.406943 GCAGAAGCTGTAAAATAGTGCAC 58.593 43.478 9.40 9.40 37.91 4.57
2668 2814 4.641954 CAGAAGCTGTAAAATAGTGCACG 58.358 43.478 12.01 0.00 0.00 5.34
2669 2815 3.125316 AGAAGCTGTAAAATAGTGCACGC 59.875 43.478 12.01 5.29 0.00 5.34
2670 2816 1.393539 AGCTGTAAAATAGTGCACGCG 59.606 47.619 12.01 3.53 0.00 6.01
2671 2817 1.797964 CTGTAAAATAGTGCACGCGC 58.202 50.000 12.01 0.00 39.24 6.86
2692 2838 3.586430 AAAAAGATTGGGCACACGC 57.414 47.368 0.00 0.00 37.44 5.34
2693 2839 1.039856 AAAAAGATTGGGCACACGCT 58.960 45.000 0.00 0.00 38.60 5.07
2694 2840 1.904287 AAAAGATTGGGCACACGCTA 58.096 45.000 0.00 0.00 38.60 4.26
2695 2841 1.904287 AAAGATTGGGCACACGCTAA 58.096 45.000 0.00 0.00 38.60 3.09
2696 2842 1.904287 AAGATTGGGCACACGCTAAA 58.096 45.000 0.00 0.00 38.60 1.85
2697 2843 1.904287 AGATTGGGCACACGCTAAAA 58.096 45.000 0.00 0.00 38.60 1.52
2698 2844 2.235016 AGATTGGGCACACGCTAAAAA 58.765 42.857 0.00 0.00 38.60 1.94
2715 2861 3.477899 AAAAACGCTATCAGAAGCTGC 57.522 42.857 0.00 0.00 40.49 5.25
2716 2862 2.099141 AAACGCTATCAGAAGCTGCA 57.901 45.000 1.02 0.00 40.49 4.41
2717 2863 2.099141 AACGCTATCAGAAGCTGCAA 57.901 45.000 1.02 0.00 40.49 4.08
2718 2864 2.099141 ACGCTATCAGAAGCTGCAAA 57.901 45.000 1.02 0.00 40.49 3.68
2719 2865 2.636830 ACGCTATCAGAAGCTGCAAAT 58.363 42.857 1.02 0.00 40.49 2.32
2720 2866 3.012518 ACGCTATCAGAAGCTGCAAATT 58.987 40.909 1.02 0.00 40.49 1.82
2721 2867 3.441572 ACGCTATCAGAAGCTGCAAATTT 59.558 39.130 1.02 0.00 40.49 1.82
2722 2868 3.789756 CGCTATCAGAAGCTGCAAATTTG 59.210 43.478 14.03 14.03 40.49 2.32
2723 2869 4.110482 GCTATCAGAAGCTGCAAATTTGG 58.890 43.478 19.47 5.27 39.50 3.28
2724 2870 3.604875 ATCAGAAGCTGCAAATTTGGG 57.395 42.857 19.47 0.00 0.00 4.12
2725 2871 1.619827 TCAGAAGCTGCAAATTTGGGG 59.380 47.619 19.47 0.00 0.00 4.96
2726 2872 0.322648 AGAAGCTGCAAATTTGGGGC 59.677 50.000 19.47 6.19 0.00 5.80
2727 2873 1.004679 AAGCTGCAAATTTGGGGCG 60.005 52.632 19.47 3.96 0.00 6.13
2728 2874 3.120385 GCTGCAAATTTGGGGCGC 61.120 61.111 19.47 0.00 0.00 6.53
2729 2875 2.434709 CTGCAAATTTGGGGCGCC 60.435 61.111 21.18 21.18 0.00 6.53
2730 2876 4.370066 TGCAAATTTGGGGCGCCG 62.370 61.111 22.54 4.62 0.00 6.46
2732 2878 3.377759 CAAATTTGGGGCGCCGGA 61.378 61.111 22.54 6.05 0.00 5.14
2733 2879 2.363665 AAATTTGGGGCGCCGGAT 60.364 55.556 22.54 8.53 0.00 4.18
2734 2880 1.987306 AAATTTGGGGCGCCGGATT 60.987 52.632 22.54 14.24 0.00 3.01
2735 2881 0.684805 AAATTTGGGGCGCCGGATTA 60.685 50.000 22.54 4.71 0.00 1.75
2736 2882 1.388837 AATTTGGGGCGCCGGATTAC 61.389 55.000 22.54 4.71 0.00 1.89
2737 2883 4.841861 TTGGGGCGCCGGATTACG 62.842 66.667 22.54 0.00 43.80 3.18
2745 2891 3.984765 CCGGATTACGCGCGCTTC 61.985 66.667 32.58 22.91 42.52 3.86
2746 2892 3.251763 CGGATTACGCGCGCTTCA 61.252 61.111 32.58 12.46 34.82 3.02
2747 2893 2.320044 GGATTACGCGCGCTTCAC 59.680 61.111 32.58 17.22 0.00 3.18
2748 2894 2.449525 GGATTACGCGCGCTTCACA 61.450 57.895 32.58 8.06 0.00 3.58
2749 2895 1.418367 GATTACGCGCGCTTCACAA 59.582 52.632 32.58 11.84 0.00 3.33
2750 2896 0.026285 GATTACGCGCGCTTCACAAT 59.974 50.000 32.58 16.41 0.00 2.71
2751 2897 0.446222 ATTACGCGCGCTTCACAATT 59.554 45.000 32.58 9.66 0.00 2.32
2752 2898 0.236187 TTACGCGCGCTTCACAATTT 59.764 45.000 32.58 8.80 0.00 1.82
2753 2899 0.451957 TACGCGCGCTTCACAATTTG 60.452 50.000 32.58 11.74 0.00 2.32
2754 2900 2.765150 GCGCGCTTCACAATTTGC 59.235 55.556 26.67 0.00 0.00 3.68
2755 2901 2.015627 GCGCGCTTCACAATTTGCA 61.016 52.632 26.67 0.00 0.00 4.08
2756 2902 1.768603 CGCGCTTCACAATTTGCAC 59.231 52.632 5.56 0.00 0.00 4.57
2757 2903 0.661187 CGCGCTTCACAATTTGCACT 60.661 50.000 5.56 0.00 0.00 4.40
2758 2904 1.399599 CGCGCTTCACAATTTGCACTA 60.400 47.619 5.56 0.00 0.00 2.74
2759 2905 1.978782 GCGCTTCACAATTTGCACTAC 59.021 47.619 0.00 0.00 0.00 2.73
2760 2906 2.233355 CGCTTCACAATTTGCACTACG 58.767 47.619 0.00 0.00 0.00 3.51
2761 2907 2.349438 CGCTTCACAATTTGCACTACGT 60.349 45.455 0.00 0.00 0.00 3.57
2762 2908 2.973224 GCTTCACAATTTGCACTACGTG 59.027 45.455 0.00 0.00 36.51 4.49
2763 2909 3.548014 GCTTCACAATTTGCACTACGTGT 60.548 43.478 0.00 0.00 35.75 4.49
2764 2910 4.597079 CTTCACAATTTGCACTACGTGTT 58.403 39.130 0.00 0.00 35.75 3.32
2765 2911 4.624336 TCACAATTTGCACTACGTGTTT 57.376 36.364 0.00 0.00 35.75 2.83
2766 2912 4.987832 TCACAATTTGCACTACGTGTTTT 58.012 34.783 0.00 0.00 35.75 2.43
2767 2913 5.031578 TCACAATTTGCACTACGTGTTTTC 58.968 37.500 0.00 0.00 35.75 2.29
2768 2914 5.034152 CACAATTTGCACTACGTGTTTTCT 58.966 37.500 0.00 0.00 35.75 2.52
2769 2915 5.514914 CACAATTTGCACTACGTGTTTTCTT 59.485 36.000 0.00 0.00 35.75 2.52
2770 2916 5.514914 ACAATTTGCACTACGTGTTTTCTTG 59.485 36.000 0.00 0.00 35.75 3.02
2771 2917 3.684103 TTGCACTACGTGTTTTCTTGG 57.316 42.857 0.00 0.00 35.75 3.61
2772 2918 1.944024 TGCACTACGTGTTTTCTTGGG 59.056 47.619 0.00 0.00 35.75 4.12
2773 2919 1.334689 GCACTACGTGTTTTCTTGGGC 60.335 52.381 0.00 0.00 35.75 5.36
2774 2920 1.944024 CACTACGTGTTTTCTTGGGCA 59.056 47.619 0.00 0.00 0.00 5.36
2775 2921 2.552315 CACTACGTGTTTTCTTGGGCAT 59.448 45.455 0.00 0.00 0.00 4.40
2776 2922 2.552315 ACTACGTGTTTTCTTGGGCATG 59.448 45.455 0.00 0.00 0.00 4.06
2777 2923 0.031994 ACGTGTTTTCTTGGGCATGC 59.968 50.000 9.90 9.90 0.00 4.06
2778 2924 0.031857 CGTGTTTTCTTGGGCATGCA 59.968 50.000 21.36 0.00 0.00 3.96
2779 2925 1.337074 CGTGTTTTCTTGGGCATGCAT 60.337 47.619 21.36 0.00 0.00 3.96
2780 2926 2.769893 GTGTTTTCTTGGGCATGCATT 58.230 42.857 21.36 0.00 0.00 3.56
2781 2927 3.140623 GTGTTTTCTTGGGCATGCATTT 58.859 40.909 21.36 0.00 0.00 2.32
2782 2928 3.565063 GTGTTTTCTTGGGCATGCATTTT 59.435 39.130 21.36 0.00 0.00 1.82
2783 2929 4.036616 GTGTTTTCTTGGGCATGCATTTTT 59.963 37.500 21.36 0.00 0.00 1.94
2784 2930 5.238214 GTGTTTTCTTGGGCATGCATTTTTA 59.762 36.000 21.36 0.00 0.00 1.52
2785 2931 5.469421 TGTTTTCTTGGGCATGCATTTTTAG 59.531 36.000 21.36 7.50 0.00 1.85
2786 2932 3.891422 TCTTGGGCATGCATTTTTAGG 57.109 42.857 21.36 0.99 0.00 2.69
2787 2933 2.093553 TCTTGGGCATGCATTTTTAGGC 60.094 45.455 21.36 0.00 0.00 3.93
2788 2934 1.273759 TGGGCATGCATTTTTAGGCA 58.726 45.000 21.36 0.00 45.23 4.75
2797 2943 5.657826 TGCATTTTTAGGCATCTGCTAAA 57.342 34.783 1.70 3.14 41.70 1.85
2798 2944 5.410067 TGCATTTTTAGGCATCTGCTAAAC 58.590 37.500 1.70 0.00 41.70 2.01
2799 2945 4.805719 GCATTTTTAGGCATCTGCTAAACC 59.194 41.667 1.70 0.00 41.70 3.27
2800 2946 5.624281 GCATTTTTAGGCATCTGCTAAACCA 60.624 40.000 1.70 0.00 41.70 3.67
2801 2947 6.397272 CATTTTTAGGCATCTGCTAAACCAA 58.603 36.000 1.70 0.02 41.70 3.67
2802 2948 5.385509 TTTTAGGCATCTGCTAAACCAAC 57.614 39.130 1.70 0.00 41.70 3.77
2803 2949 1.453155 AGGCATCTGCTAAACCAACG 58.547 50.000 1.70 0.00 41.70 4.10
2804 2950 1.165270 GGCATCTGCTAAACCAACGT 58.835 50.000 1.70 0.00 41.70 3.99
2805 2951 1.539827 GGCATCTGCTAAACCAACGTT 59.460 47.619 0.00 0.00 41.70 3.99
2806 2952 2.584791 GCATCTGCTAAACCAACGTTG 58.415 47.619 21.47 21.47 38.21 4.10
2807 2953 2.668279 GCATCTGCTAAACCAACGTTGG 60.668 50.000 39.20 39.20 45.27 3.77
2808 2954 5.751247 GCATCTGCTAAACCAACGTTGGG 62.751 52.174 41.83 28.44 44.62 4.12
2820 2966 4.382320 GTTGGGTCCGGCGCACTA 62.382 66.667 10.83 0.00 39.87 2.74
2821 2967 3.627952 TTGGGTCCGGCGCACTAA 61.628 61.111 10.83 0.00 39.87 2.24
2822 2968 3.179888 TTGGGTCCGGCGCACTAAA 62.180 57.895 10.83 0.00 39.87 1.85
2823 2969 2.358984 GGGTCCGGCGCACTAAAA 60.359 61.111 10.83 0.00 0.00 1.52
2824 2970 2.396157 GGGTCCGGCGCACTAAAAG 61.396 63.158 10.83 0.00 0.00 2.27
2825 2971 1.670083 GGTCCGGCGCACTAAAAGT 60.670 57.895 10.83 0.00 0.00 2.66
2837 2983 4.631133 CACTAAAAGTGCTACAGTGACG 57.369 45.455 0.00 0.00 39.62 4.35
2838 2984 3.057734 ACTAAAAGTGCTACAGTGACGC 58.942 45.455 0.00 0.00 0.00 5.19
2839 2985 0.859232 AAAAGTGCTACAGTGACGCG 59.141 50.000 3.53 3.53 0.00 6.01
2840 2986 1.557443 AAAGTGCTACAGTGACGCGC 61.557 55.000 5.73 0.00 34.58 6.86
2841 2987 2.421877 AAGTGCTACAGTGACGCGCT 62.422 55.000 5.73 15.28 45.44 5.92
2842 2988 1.154093 GTGCTACAGTGACGCGCTA 60.154 57.895 5.73 0.00 0.00 4.26
2843 2989 0.731514 GTGCTACAGTGACGCGCTAA 60.732 55.000 5.73 0.00 0.00 3.09
2844 2990 0.038983 TGCTACAGTGACGCGCTAAA 60.039 50.000 5.73 0.00 0.00 1.85
2845 2991 1.065358 GCTACAGTGACGCGCTAAAA 58.935 50.000 5.73 0.00 0.00 1.52
2846 2992 1.201780 GCTACAGTGACGCGCTAAAAC 60.202 52.381 5.73 0.00 0.00 2.43
2847 2993 2.325761 CTACAGTGACGCGCTAAAACT 58.674 47.619 5.73 0.00 0.00 2.66
2848 2994 2.427232 ACAGTGACGCGCTAAAACTA 57.573 45.000 5.73 0.00 0.00 2.24
2849 2995 2.955614 ACAGTGACGCGCTAAAACTAT 58.044 42.857 5.73 0.00 0.00 2.12
2850 2996 3.323243 ACAGTGACGCGCTAAAACTATT 58.677 40.909 5.73 0.00 0.00 1.73
2851 2997 3.744426 ACAGTGACGCGCTAAAACTATTT 59.256 39.130 5.73 0.00 0.00 1.40
2852 2998 4.212636 ACAGTGACGCGCTAAAACTATTTT 59.787 37.500 5.73 0.00 36.67 1.82
2853 2999 5.406175 ACAGTGACGCGCTAAAACTATTTTA 59.594 36.000 5.73 0.00 34.19 1.52
2854 3000 6.073657 ACAGTGACGCGCTAAAACTATTTTAA 60.074 34.615 5.73 0.00 34.93 1.52
2855 3001 6.245710 CAGTGACGCGCTAAAACTATTTTAAC 59.754 38.462 5.73 0.00 34.93 2.01
2856 3002 5.221682 GTGACGCGCTAAAACTATTTTAACG 59.778 40.000 5.73 10.83 43.62 3.18
2859 3005 4.632933 CGCTAAAACTATTTTAACGCGC 57.367 40.909 5.73 0.00 40.40 6.86
2860 3006 3.172467 CGCTAAAACTATTTTAACGCGCG 59.828 43.478 30.96 30.96 40.40 6.86
2861 3007 4.325386 GCTAAAACTATTTTAACGCGCGA 58.675 39.130 39.36 14.91 34.93 5.87
2862 3008 4.782533 GCTAAAACTATTTTAACGCGCGAA 59.217 37.500 39.36 21.19 34.93 4.70
2863 3009 5.281143 GCTAAAACTATTTTAACGCGCGAAA 59.719 36.000 39.36 26.31 34.93 3.46
2864 3010 5.470168 AAAACTATTTTAACGCGCGAAAC 57.530 34.783 39.36 0.00 0.00 2.78
2865 3011 4.394099 AACTATTTTAACGCGCGAAACT 57.606 36.364 39.36 22.47 0.00 2.66
2866 3012 4.394099 ACTATTTTAACGCGCGAAACTT 57.606 36.364 39.36 22.67 0.00 2.66
2867 3013 4.775664 ACTATTTTAACGCGCGAAACTTT 58.224 34.783 39.36 22.26 0.00 2.66
2868 3014 5.207033 ACTATTTTAACGCGCGAAACTTTT 58.793 33.333 39.36 21.46 0.00 2.27
2869 3015 6.361899 ACTATTTTAACGCGCGAAACTTTTA 58.638 32.000 39.36 20.30 0.00 1.52
2870 3016 7.017055 ACTATTTTAACGCGCGAAACTTTTAT 58.983 30.769 39.36 18.07 0.00 1.40
2871 3017 5.468729 TTTTAACGCGCGAAACTTTTATG 57.531 34.783 39.36 2.23 0.00 1.90
2872 3018 2.673976 AACGCGCGAAACTTTTATGT 57.326 40.000 39.36 5.95 0.00 2.29
2873 3019 1.945207 ACGCGCGAAACTTTTATGTG 58.055 45.000 39.36 1.45 0.00 3.21
2874 3020 0.628289 CGCGCGAAACTTTTATGTGC 59.372 50.000 28.94 3.17 0.00 4.57
2875 3021 0.981956 GCGCGAAACTTTTATGTGCC 59.018 50.000 12.10 0.00 0.00 5.01
2876 3022 1.401018 GCGCGAAACTTTTATGTGCCT 60.401 47.619 12.10 0.00 0.00 4.75
2877 3023 2.241722 CGCGAAACTTTTATGTGCCTG 58.758 47.619 0.00 0.00 0.00 4.85
2878 3024 2.350388 CGCGAAACTTTTATGTGCCTGT 60.350 45.455 0.00 0.00 0.00 4.00
2879 3025 3.638484 GCGAAACTTTTATGTGCCTGTT 58.362 40.909 0.00 0.00 0.00 3.16
2880 3026 3.425193 GCGAAACTTTTATGTGCCTGTTG 59.575 43.478 0.00 0.00 0.00 3.33
2881 3027 4.791411 GCGAAACTTTTATGTGCCTGTTGA 60.791 41.667 0.00 0.00 0.00 3.18
2882 3028 5.277825 CGAAACTTTTATGTGCCTGTTGAA 58.722 37.500 0.00 0.00 0.00 2.69
2883 3029 5.399301 CGAAACTTTTATGTGCCTGTTGAAG 59.601 40.000 0.00 0.00 0.00 3.02
2884 3030 6.463995 AAACTTTTATGTGCCTGTTGAAGA 57.536 33.333 0.00 0.00 0.00 2.87
2885 3031 6.655078 AACTTTTATGTGCCTGTTGAAGAT 57.345 33.333 0.00 0.00 0.00 2.40
2886 3032 6.017400 ACTTTTATGTGCCTGTTGAAGATG 57.983 37.500 0.00 0.00 0.00 2.90
2887 3033 4.439305 TTTATGTGCCTGTTGAAGATGC 57.561 40.909 0.00 0.00 0.00 3.91
2888 3034 2.211250 ATGTGCCTGTTGAAGATGCT 57.789 45.000 0.00 0.00 0.00 3.79
2889 3035 1.527034 TGTGCCTGTTGAAGATGCTC 58.473 50.000 0.00 0.00 0.00 4.26
2890 3036 1.072806 TGTGCCTGTTGAAGATGCTCT 59.927 47.619 0.00 0.00 0.00 4.09
2891 3037 2.157738 GTGCCTGTTGAAGATGCTCTT 58.842 47.619 0.00 0.00 39.87 2.85
2892 3038 3.244526 TGTGCCTGTTGAAGATGCTCTTA 60.245 43.478 0.00 0.00 36.73 2.10
2893 3039 3.373439 GTGCCTGTTGAAGATGCTCTTAG 59.627 47.826 0.00 0.00 36.73 2.18
2894 3040 3.261643 TGCCTGTTGAAGATGCTCTTAGA 59.738 43.478 0.00 0.00 36.73 2.10
2895 3041 4.080695 TGCCTGTTGAAGATGCTCTTAGAT 60.081 41.667 0.00 0.00 36.73 1.98
2945 3091 5.681437 GCACCTAGTCGATCTCAAATTGGTA 60.681 44.000 0.00 0.00 0.00 3.25
3009 3155 0.322322 ATTTACTCCACCGTTCGGCA 59.678 50.000 11.32 0.00 0.00 5.69
3040 3188 6.678568 AAAAGAATCTCACTCTCTCTTCCA 57.321 37.500 0.00 0.00 0.00 3.53
3048 3196 2.754552 CACTCTCTCTTCCACTCCTCTG 59.245 54.545 0.00 0.00 0.00 3.35
3059 3207 0.682855 ACTCCTCTGCCTCTTCTCCG 60.683 60.000 0.00 0.00 0.00 4.63
3142 3303 3.771160 GACGAGGTGGCCGGACAT 61.771 66.667 16.47 0.00 0.00 3.06
3275 3436 0.688087 GACTTCCCGGACCTCCATCT 60.688 60.000 0.73 0.00 35.14 2.90
3278 3439 2.765807 CCCGGACCTCCATCTGCT 60.766 66.667 0.73 0.00 35.14 4.24
3305 3466 1.067846 GCCGCATAGGACATACATCGA 60.068 52.381 0.00 0.00 45.00 3.59
3316 3477 1.103803 ATACATCGACGTCTGGCAGT 58.896 50.000 15.27 7.50 0.00 4.40
3379 3540 1.745890 CACACGAGGAAGTGGGTCA 59.254 57.895 0.00 0.00 45.80 4.02
3382 3543 1.155390 ACGAGGAAGTGGGTCAGGA 59.845 57.895 0.00 0.00 0.00 3.86
3388 3549 0.680061 GAAGTGGGTCAGGACGTTCT 59.320 55.000 0.00 0.00 0.00 3.01
3392 3553 1.549170 GTGGGTCAGGACGTTCTACAT 59.451 52.381 0.00 0.00 0.00 2.29
3420 3581 2.645510 CGCGGCGATGGAATACGAC 61.646 63.158 19.16 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.196372 CCAGAGGCAGGCCAAAAA 57.804 55.556 13.63 0.00 38.92 1.94
21 22 1.927608 GCCTTTTCTTCGCCAGAGGC 61.928 60.000 0.00 0.00 46.75 4.70
22 23 0.606401 TGCCTTTTCTTCGCCAGAGG 60.606 55.000 0.00 0.00 31.12 3.69
23 24 1.238439 TTGCCTTTTCTTCGCCAGAG 58.762 50.000 0.00 0.00 31.12 3.35
24 25 1.909700 ATTGCCTTTTCTTCGCCAGA 58.090 45.000 0.00 0.00 0.00 3.86
25 26 2.730550 AATTGCCTTTTCTTCGCCAG 57.269 45.000 0.00 0.00 0.00 4.85
26 27 2.095466 CGTAATTGCCTTTTCTTCGCCA 60.095 45.455 0.00 0.00 0.00 5.69
27 28 2.515912 CGTAATTGCCTTTTCTTCGCC 58.484 47.619 0.00 0.00 0.00 5.54
28 29 2.095415 ACCGTAATTGCCTTTTCTTCGC 60.095 45.455 0.00 0.00 0.00 4.70
29 30 3.058501 ACACCGTAATTGCCTTTTCTTCG 60.059 43.478 0.00 0.00 0.00 3.79
30 31 4.473199 GACACCGTAATTGCCTTTTCTTC 58.527 43.478 0.00 0.00 0.00 2.87
31 32 3.058501 CGACACCGTAATTGCCTTTTCTT 60.059 43.478 0.00 0.00 0.00 2.52
32 33 2.482721 CGACACCGTAATTGCCTTTTCT 59.517 45.455 0.00 0.00 0.00 2.52
33 34 2.846693 CGACACCGTAATTGCCTTTTC 58.153 47.619 0.00 0.00 0.00 2.29
34 35 1.068816 GCGACACCGTAATTGCCTTTT 60.069 47.619 0.00 0.00 38.24 2.27
35 36 0.519961 GCGACACCGTAATTGCCTTT 59.480 50.000 0.00 0.00 38.24 3.11
36 37 1.632046 CGCGACACCGTAATTGCCTT 61.632 55.000 0.00 0.00 38.24 4.35
37 38 2.098233 CGCGACACCGTAATTGCCT 61.098 57.895 0.00 0.00 38.24 4.75
38 39 2.398036 CGCGACACCGTAATTGCC 59.602 61.111 0.00 0.00 38.24 4.52
39 40 2.276430 GCGCGACACCGTAATTGC 60.276 61.111 12.10 0.00 38.24 3.56
40 41 1.632046 AAGGCGCGACACCGTAATTG 61.632 55.000 17.71 0.00 38.24 2.32
41 42 1.356527 GAAGGCGCGACACCGTAATT 61.357 55.000 17.71 0.00 38.24 1.40
42 43 1.808390 GAAGGCGCGACACCGTAAT 60.808 57.895 17.71 0.00 38.24 1.89
43 44 2.431260 GAAGGCGCGACACCGTAA 60.431 61.111 17.71 0.00 38.24 3.18
44 45 3.210223 TTGAAGGCGCGACACCGTA 62.210 57.895 17.71 0.00 38.24 4.02
45 46 4.595538 TTGAAGGCGCGACACCGT 62.596 61.111 17.71 0.95 38.24 4.83
46 47 4.072088 GTTGAAGGCGCGACACCG 62.072 66.667 17.71 0.00 39.16 4.94
47 48 2.665185 AGTTGAAGGCGCGACACC 60.665 61.111 17.71 5.51 0.00 4.16
48 49 2.853914 GAGTTGAAGGCGCGACAC 59.146 61.111 17.71 8.76 0.00 3.67
49 50 2.733218 CGAGTTGAAGGCGCGACA 60.733 61.111 17.71 2.83 0.00 4.35
50 51 4.135493 GCGAGTTGAAGGCGCGAC 62.135 66.667 12.10 7.34 41.37 5.19
54 55 0.798776 AATGAAGCGAGTTGAAGGCG 59.201 50.000 0.00 0.00 0.00 5.52
55 56 1.730446 GCAATGAAGCGAGTTGAAGGC 60.730 52.381 0.00 0.00 0.00 4.35
56 57 1.808945 AGCAATGAAGCGAGTTGAAGG 59.191 47.619 0.00 0.00 40.15 3.46
57 58 3.231965 CAAGCAATGAAGCGAGTTGAAG 58.768 45.455 0.00 0.00 40.15 3.02
58 59 2.618241 ACAAGCAATGAAGCGAGTTGAA 59.382 40.909 0.00 0.00 40.15 2.69
59 60 2.221169 ACAAGCAATGAAGCGAGTTGA 58.779 42.857 0.00 0.00 40.15 3.18
60 61 2.693797 ACAAGCAATGAAGCGAGTTG 57.306 45.000 0.00 0.00 40.15 3.16
61 62 3.403038 ACTACAAGCAATGAAGCGAGTT 58.597 40.909 0.00 0.00 40.15 3.01
62 63 2.996621 GACTACAAGCAATGAAGCGAGT 59.003 45.455 0.00 0.00 40.15 4.18
63 64 2.028523 CGACTACAAGCAATGAAGCGAG 59.971 50.000 0.00 0.00 40.15 5.03
64 65 1.992667 CGACTACAAGCAATGAAGCGA 59.007 47.619 0.00 0.00 40.15 4.93
65 66 1.726791 ACGACTACAAGCAATGAAGCG 59.273 47.619 0.00 0.00 40.15 4.68
66 67 2.222596 CGACGACTACAAGCAATGAAGC 60.223 50.000 0.00 0.00 0.00 3.86
67 68 2.222596 GCGACGACTACAAGCAATGAAG 60.223 50.000 0.00 0.00 0.00 3.02
68 69 1.724623 GCGACGACTACAAGCAATGAA 59.275 47.619 0.00 0.00 0.00 2.57
69 70 1.067846 AGCGACGACTACAAGCAATGA 60.068 47.619 0.00 0.00 0.00 2.57
70 71 1.350193 AGCGACGACTACAAGCAATG 58.650 50.000 0.00 0.00 0.00 2.82
71 72 2.422479 TCTAGCGACGACTACAAGCAAT 59.578 45.455 0.00 0.00 0.00 3.56
72 73 1.808343 TCTAGCGACGACTACAAGCAA 59.192 47.619 0.00 0.00 0.00 3.91
73 74 1.445871 TCTAGCGACGACTACAAGCA 58.554 50.000 0.00 0.00 0.00 3.91
74 75 2.376956 CATCTAGCGACGACTACAAGC 58.623 52.381 0.00 0.00 0.00 4.01
75 76 2.355132 ACCATCTAGCGACGACTACAAG 59.645 50.000 0.00 0.00 0.00 3.16
76 77 2.353889 GACCATCTAGCGACGACTACAA 59.646 50.000 0.00 0.00 0.00 2.41
77 78 1.938577 GACCATCTAGCGACGACTACA 59.061 52.381 0.00 0.00 0.00 2.74
78 79 2.211806 AGACCATCTAGCGACGACTAC 58.788 52.381 0.00 0.00 0.00 2.73
79 80 2.616634 AGACCATCTAGCGACGACTA 57.383 50.000 0.00 0.00 0.00 2.59
80 81 2.485903 CTAGACCATCTAGCGACGACT 58.514 52.381 0.00 0.00 39.88 4.18
81 82 1.532007 CCTAGACCATCTAGCGACGAC 59.468 57.143 0.00 0.00 43.89 4.34
82 83 1.542767 CCCTAGACCATCTAGCGACGA 60.543 57.143 0.00 0.00 43.89 4.20
83 84 0.875728 CCCTAGACCATCTAGCGACG 59.124 60.000 7.27 0.00 43.89 5.12
84 85 1.249407 CCCCTAGACCATCTAGCGAC 58.751 60.000 7.27 0.00 43.89 5.19
85 86 0.112606 CCCCCTAGACCATCTAGCGA 59.887 60.000 7.27 0.00 43.89 4.93
86 87 0.112606 TCCCCCTAGACCATCTAGCG 59.887 60.000 7.27 0.00 43.89 4.26
87 88 1.133136 TGTCCCCCTAGACCATCTAGC 60.133 57.143 7.27 0.00 43.89 3.42
88 89 3.330126 TTGTCCCCCTAGACCATCTAG 57.670 52.381 5.97 5.97 44.62 2.43
89 90 3.654273 CTTTGTCCCCCTAGACCATCTA 58.346 50.000 0.00 0.00 35.83 1.98
90 91 2.482494 CTTTGTCCCCCTAGACCATCT 58.518 52.381 0.00 0.00 35.83 2.90
91 92 1.134068 GCTTTGTCCCCCTAGACCATC 60.134 57.143 0.00 0.00 35.83 3.51
92 93 0.919710 GCTTTGTCCCCCTAGACCAT 59.080 55.000 0.00 0.00 35.83 3.55
93 94 0.474854 TGCTTTGTCCCCCTAGACCA 60.475 55.000 0.00 0.00 35.83 4.02
94 95 0.919710 ATGCTTTGTCCCCCTAGACC 59.080 55.000 0.00 0.00 35.83 3.85
95 96 1.559682 TCATGCTTTGTCCCCCTAGAC 59.440 52.381 0.00 0.00 37.28 2.59
96 97 1.965414 TCATGCTTTGTCCCCCTAGA 58.035 50.000 0.00 0.00 0.00 2.43
97 98 2.290896 TGTTCATGCTTTGTCCCCCTAG 60.291 50.000 0.00 0.00 0.00 3.02
98 99 1.707989 TGTTCATGCTTTGTCCCCCTA 59.292 47.619 0.00 0.00 0.00 3.53
99 100 0.482446 TGTTCATGCTTTGTCCCCCT 59.518 50.000 0.00 0.00 0.00 4.79
100 101 0.890683 CTGTTCATGCTTTGTCCCCC 59.109 55.000 0.00 0.00 0.00 5.40
101 102 1.270550 CACTGTTCATGCTTTGTCCCC 59.729 52.381 0.00 0.00 0.00 4.81
102 103 1.336240 GCACTGTTCATGCTTTGTCCC 60.336 52.381 0.00 0.00 40.08 4.46
103 104 1.337703 TGCACTGTTCATGCTTTGTCC 59.662 47.619 0.00 0.00 43.77 4.02
104 105 2.780065 TGCACTGTTCATGCTTTGTC 57.220 45.000 0.00 0.00 43.77 3.18
105 106 3.523606 TTTGCACTGTTCATGCTTTGT 57.476 38.095 0.00 0.00 43.77 2.83
106 107 4.567558 TCTTTTTGCACTGTTCATGCTTTG 59.432 37.500 0.00 0.00 43.77 2.77
107 108 4.757594 TCTTTTTGCACTGTTCATGCTTT 58.242 34.783 0.00 0.00 43.77 3.51
206 208 2.759114 CCAGAGGCAGGCCAAAGA 59.241 61.111 13.63 0.00 38.92 2.52
216 218 4.511636 CTCTTCTTCGCCAGAGGC 57.488 61.111 0.00 0.00 46.75 4.70
218 220 0.036952 TTGCCTCTTCTTCGCCAGAG 60.037 55.000 0.00 0.00 36.96 3.35
219 221 0.615331 ATTGCCTCTTCTTCGCCAGA 59.385 50.000 0.00 0.00 0.00 3.86
224 232 3.941483 ACACCATAATTGCCTCTTCTTCG 59.059 43.478 0.00 0.00 0.00 3.79
235 243 0.732571 AAGGCGCGACACCATAATTG 59.267 50.000 17.71 0.00 0.00 2.32
251 259 1.714794 ACAATGAAGCGAGTCGAAGG 58.285 50.000 18.61 0.05 0.00 3.46
256 264 5.122396 AGGATTACAAACAATGAAGCGAGTC 59.878 40.000 0.00 0.00 0.00 3.36
279 287 2.125773 ACCGTAGACCACCTAGTGAG 57.874 55.000 0.00 0.00 35.23 3.51
281 289 2.019984 GGTACCGTAGACCACCTAGTG 58.980 57.143 0.00 0.00 36.91 2.74
282 290 1.635487 TGGTACCGTAGACCACCTAGT 59.365 52.381 7.57 0.00 42.15 2.57
305 313 2.124903 GCAGGTGACGGATATGTTACG 58.875 52.381 0.00 0.00 0.00 3.18
306 314 2.102588 AGGCAGGTGACGGATATGTTAC 59.897 50.000 0.00 0.00 0.00 2.50
307 315 2.394632 AGGCAGGTGACGGATATGTTA 58.605 47.619 0.00 0.00 0.00 2.41
308 316 1.204146 AGGCAGGTGACGGATATGTT 58.796 50.000 0.00 0.00 0.00 2.71
309 317 1.139058 GAAGGCAGGTGACGGATATGT 59.861 52.381 0.00 0.00 0.00 2.29
316 324 2.338620 TGTCGAAGGCAGGTGACG 59.661 61.111 0.00 0.00 36.97 4.35
324 332 0.320771 ACTGTGATGGTGTCGAAGGC 60.321 55.000 0.00 0.00 0.00 4.35
325 333 2.881074 CTACTGTGATGGTGTCGAAGG 58.119 52.381 0.00 0.00 0.00 3.46
334 342 3.548745 TTCTGATGGCTACTGTGATGG 57.451 47.619 0.00 0.00 0.00 3.51
413 421 1.301716 TGAGACAGGTCCGCAAAGC 60.302 57.895 0.00 0.00 0.00 3.51
452 467 3.367932 TGCTTCGATCTGATTCGTTCAAC 59.632 43.478 0.00 0.00 40.03 3.18
465 480 2.106683 CCGGGGTGTTGCTTCGATC 61.107 63.158 0.00 0.00 0.00 3.69
467 482 3.235481 TCCGGGGTGTTGCTTCGA 61.235 61.111 0.00 0.00 0.00 3.71
470 485 2.203294 GTGTCCGGGGTGTTGCTT 60.203 61.111 0.00 0.00 0.00 3.91
471 486 4.619227 CGTGTCCGGGGTGTTGCT 62.619 66.667 0.00 0.00 0.00 3.91
494 509 1.145738 AGTGCCAGACCAGGAATTTGT 59.854 47.619 0.00 0.00 0.00 2.83
499 514 1.461268 TGGAGTGCCAGACCAGGAA 60.461 57.895 0.00 0.00 39.92 3.36
514 529 1.582968 GCGTCTTAGTCGTGGTGGA 59.417 57.895 0.68 0.00 0.00 4.02
530 545 2.056223 TAGGTCTTCCCCTTCGGCG 61.056 63.158 0.00 0.00 35.97 6.46
539 554 0.470341 GGATGGCAGGTAGGTCTTCC 59.530 60.000 0.00 0.00 30.78 3.46
541 556 1.771255 GATGGATGGCAGGTAGGTCTT 59.229 52.381 0.00 0.00 0.00 3.01
553 569 1.094785 GGTTCGTGGTTGATGGATGG 58.905 55.000 0.00 0.00 0.00 3.51
580 596 4.483311 GACGACATCTAAAAGACCGAACT 58.517 43.478 0.00 0.00 0.00 3.01
592 608 2.878406 TGATCTGCATCGACGACATCTA 59.122 45.455 0.00 0.00 0.00 1.98
618 634 4.521146 AGGTAGTCCAAGAATGAATGCAG 58.479 43.478 0.00 0.00 35.89 4.41
653 670 2.505777 CGTCTGCTCCAGCGTCAG 60.506 66.667 0.00 0.00 45.83 3.51
726 743 7.064371 CAGTCTGTTCAAATAGAGATGTTGGAG 59.936 40.741 0.00 0.00 0.00 3.86
727 744 6.875726 CAGTCTGTTCAAATAGAGATGTTGGA 59.124 38.462 0.00 0.00 0.00 3.53
728 745 6.093219 CCAGTCTGTTCAAATAGAGATGTTGG 59.907 42.308 0.00 0.00 0.00 3.77
730 747 6.773638 ACCAGTCTGTTCAAATAGAGATGTT 58.226 36.000 0.00 0.00 0.00 2.71
749 766 1.002087 GTGATGGACTCCGAAACCAGT 59.998 52.381 0.00 0.00 37.12 4.00
758 775 1.315690 TACGATCGGTGATGGACTCC 58.684 55.000 20.98 0.00 0.00 3.85
773 790 0.384309 CGCCAGCTTGGAGTATACGA 59.616 55.000 6.40 0.00 40.96 3.43
775 792 1.870167 GCTCGCCAGCTTGGAGTATAC 60.870 57.143 0.00 0.00 40.96 1.47
787 804 2.343163 CTTCCGGTCTAGCTCGCCAG 62.343 65.000 0.00 0.00 0.00 4.85
798 815 2.027625 CGACCAAGCACTTCCGGTC 61.028 63.158 0.00 8.98 43.73 4.79
834 851 1.795177 GACTACGTGTCCGCGTGTC 60.795 63.158 15.46 15.15 45.33 3.67
845 862 2.814183 CTTTGGCTCGCCGACTACGT 62.814 60.000 3.14 0.00 39.42 3.57
867 884 1.654317 GAGGAGAGCTCGACGAGTAA 58.346 55.000 24.80 0.00 31.39 2.24
874 891 2.441164 GGCTGGAGGAGAGCTCGA 60.441 66.667 8.37 0.00 36.63 4.04
884 901 2.765807 ATGGAGGACCGGCTGGAG 60.766 66.667 21.41 0.00 39.21 3.86
924 945 2.099141 TGATCGTCCAAGCTGAAAGG 57.901 50.000 0.00 0.00 0.00 3.11
925 946 3.005554 ACATGATCGTCCAAGCTGAAAG 58.994 45.455 0.00 0.00 0.00 2.62
986 1018 2.245795 TTGCACGCATCGAATTGAAG 57.754 45.000 0.00 0.00 0.00 3.02
991 1023 3.020102 GCTTTTGCACGCATCGAAT 57.980 47.368 0.00 0.00 46.58 3.34
1043 1084 7.618137 ACGAGATAACAATAACAACTAGGGTT 58.382 34.615 7.16 7.16 35.86 4.11
1045 1086 7.980099 AGAACGAGATAACAATAACAACTAGGG 59.020 37.037 0.00 0.00 0.00 3.53
1050 1091 8.108782 GTGCTAGAACGAGATAACAATAACAAC 58.891 37.037 0.00 0.00 0.00 3.32
1099 1141 1.293498 GGTGATGGTCGACAGTGCT 59.707 57.895 18.91 0.00 0.00 4.40
1155 1200 2.252260 CGCAAACCAGGTGCTTCG 59.748 61.111 0.00 0.00 39.95 3.79
1189 1234 1.375396 CACCCACGAGCCGATGAAA 60.375 57.895 1.50 0.00 0.00 2.69
1291 1358 0.552848 ATGGGATGGAAATGCGAGGT 59.447 50.000 0.00 0.00 0.00 3.85
1292 1359 0.956633 CATGGGATGGAAATGCGAGG 59.043 55.000 0.00 0.00 0.00 4.63
1735 1839 2.291465 TGTTTGCAGTAGTCGTAGTCGT 59.709 45.455 0.00 0.00 38.33 4.34
1821 1950 2.507102 ATCGGTGCGCTCAGTTCG 60.507 61.111 9.73 4.10 0.00 3.95
1847 1977 0.736325 ATAGGTTCTGCGCACGACAC 60.736 55.000 5.66 9.24 0.00 3.67
2012 2156 2.361104 TTGGCGCCCATGAGGAAC 60.361 61.111 26.77 0.00 38.24 3.62
2033 2177 3.291101 GACGGCGTTCTGGTAGGCA 62.291 63.158 16.19 0.00 0.00 4.75
2524 2670 9.569122 GACAGGAATGCCTTTATTTAGGTATAA 57.431 33.333 0.00 0.00 43.90 0.98
2532 2678 6.894103 AGAATCAGACAGGAATGCCTTTATTT 59.106 34.615 0.00 0.00 43.90 1.40
2534 2680 6.011122 AGAATCAGACAGGAATGCCTTTAT 57.989 37.500 0.00 0.00 43.90 1.40
2535 2681 5.045651 TGAGAATCAGACAGGAATGCCTTTA 60.046 40.000 0.00 0.00 40.96 1.85
2536 2682 4.263639 TGAGAATCAGACAGGAATGCCTTT 60.264 41.667 0.00 0.00 40.96 3.11
2537 2683 3.265221 TGAGAATCAGACAGGAATGCCTT 59.735 43.478 0.00 0.00 40.96 4.35
2538 2684 2.842496 TGAGAATCAGACAGGAATGCCT 59.158 45.455 0.00 0.00 43.80 4.75
2571 2717 1.300971 TGCGCCTGTTGAAGATGCTC 61.301 55.000 4.18 0.00 0.00 4.26
2574 2720 0.592637 TTGTGCGCCTGTTGAAGATG 59.407 50.000 4.18 0.00 0.00 2.90
2575 2721 1.317613 TTTGTGCGCCTGTTGAAGAT 58.682 45.000 4.18 0.00 0.00 2.40
2576 2722 1.098869 TTTTGTGCGCCTGTTGAAGA 58.901 45.000 4.18 0.00 0.00 2.87
2577 2723 1.587946 GTTTTTGTGCGCCTGTTGAAG 59.412 47.619 4.18 0.00 0.00 3.02
2578 2724 1.203523 AGTTTTTGTGCGCCTGTTGAA 59.796 42.857 4.18 0.00 0.00 2.69
2579 2725 0.814457 AGTTTTTGTGCGCCTGTTGA 59.186 45.000 4.18 0.00 0.00 3.18
2580 2726 0.922717 CAGTTTTTGTGCGCCTGTTG 59.077 50.000 4.18 0.00 0.00 3.33
2581 2727 0.530288 ACAGTTTTTGTGCGCCTGTT 59.470 45.000 4.18 0.00 38.99 3.16
2582 2728 0.530288 AACAGTTTTTGTGCGCCTGT 59.470 45.000 4.18 6.13 40.74 4.00
2583 2729 1.587946 GAAACAGTTTTTGTGCGCCTG 59.412 47.619 4.18 5.38 40.74 4.85
2584 2730 1.797348 CGAAACAGTTTTTGTGCGCCT 60.797 47.619 4.18 0.00 40.74 5.52
2585 2731 0.570272 CGAAACAGTTTTTGTGCGCC 59.430 50.000 4.18 0.00 40.74 6.53
2587 2733 0.223513 CGCGAAACAGTTTTTGTGCG 59.776 50.000 0.00 16.24 40.74 5.34
2589 2735 0.223513 CGCGCGAAACAGTTTTTGTG 59.776 50.000 28.94 4.43 40.74 3.33
2590 2736 1.468340 GCGCGCGAAACAGTTTTTGT 61.468 50.000 37.18 0.00 43.45 2.83
2591 2737 1.195746 GCGCGCGAAACAGTTTTTG 59.804 52.632 37.18 0.00 0.00 2.44
2592 2738 0.305313 TAGCGCGCGAAACAGTTTTT 59.695 45.000 37.18 5.80 0.00 1.94
2593 2739 0.305313 TTAGCGCGCGAAACAGTTTT 59.695 45.000 37.18 6.40 0.00 2.43
2594 2740 0.305313 TTTAGCGCGCGAAACAGTTT 59.695 45.000 37.18 11.91 0.00 2.66
2595 2741 0.305313 TTTTAGCGCGCGAAACAGTT 59.695 45.000 33.79 14.34 0.00 3.16
2596 2742 0.515564 ATTTTAGCGCGCGAAACAGT 59.484 45.000 33.79 21.47 0.00 3.55
2597 2743 1.573156 GAATTTTAGCGCGCGAAACAG 59.427 47.619 33.79 2.99 0.00 3.16
2598 2744 1.597798 GAATTTTAGCGCGCGAAACA 58.402 45.000 33.79 24.82 0.00 2.83
2599 2745 0.555324 CGAATTTTAGCGCGCGAAAC 59.445 50.000 33.79 22.82 0.00 2.78
2600 2746 0.439214 TCGAATTTTAGCGCGCGAAA 59.561 45.000 37.18 31.06 0.00 3.46
2601 2747 0.024491 CTCGAATTTTAGCGCGCGAA 59.976 50.000 37.18 25.07 0.00 4.70
2602 2748 1.074319 ACTCGAATTTTAGCGCGCGA 61.074 50.000 37.18 19.65 0.00 5.87
2603 2749 0.247145 AACTCGAATTTTAGCGCGCG 60.247 50.000 28.44 28.44 0.00 6.86
2604 2750 1.878373 AAACTCGAATTTTAGCGCGC 58.122 45.000 26.66 26.66 0.00 6.86
2622 2768 2.494530 GCTGTCCGGCACCCAAAAA 61.495 57.895 0.00 0.00 0.00 1.94
2623 2769 2.909965 GCTGTCCGGCACCCAAAA 60.910 61.111 0.00 0.00 0.00 2.44
2624 2770 3.842925 GAGCTGTCCGGCACCCAAA 62.843 63.158 0.00 0.00 34.17 3.28
2625 2771 4.329545 GAGCTGTCCGGCACCCAA 62.330 66.667 0.00 0.00 34.17 4.12
2634 2780 1.744741 GCTTCTGCTGGAGCTGTCC 60.745 63.158 16.22 0.00 44.24 4.02
2635 2781 3.887783 GCTTCTGCTGGAGCTGTC 58.112 61.111 16.22 0.00 42.66 3.51
2645 2791 4.406943 GTGCACTATTTTACAGCTTCTGC 58.593 43.478 10.32 0.00 34.37 4.26
2646 2792 4.641954 CGTGCACTATTTTACAGCTTCTG 58.358 43.478 16.19 0.00 37.52 3.02
2647 2793 3.125316 GCGTGCACTATTTTACAGCTTCT 59.875 43.478 16.19 0.00 0.00 2.85
2648 2794 3.417185 GCGTGCACTATTTTACAGCTTC 58.583 45.455 16.19 0.00 0.00 3.86
2649 2795 2.159707 CGCGTGCACTATTTTACAGCTT 60.160 45.455 16.19 0.00 0.00 3.74
2650 2796 1.393539 CGCGTGCACTATTTTACAGCT 59.606 47.619 16.19 0.00 0.00 4.24
2651 2797 1.797964 CGCGTGCACTATTTTACAGC 58.202 50.000 16.19 6.39 0.00 4.40
2652 2798 1.797964 GCGCGTGCACTATTTTACAG 58.202 50.000 17.66 0.00 42.15 2.74
2653 2799 3.959520 GCGCGTGCACTATTTTACA 57.040 47.368 17.66 0.00 42.15 2.41
2674 2820 1.039856 AGCGTGTGCCCAATCTTTTT 58.960 45.000 0.00 0.00 44.31 1.94
2675 2821 1.904287 TAGCGTGTGCCCAATCTTTT 58.096 45.000 0.00 0.00 44.31 2.27
2676 2822 1.904287 TTAGCGTGTGCCCAATCTTT 58.096 45.000 0.00 0.00 44.31 2.52
2677 2823 1.904287 TTTAGCGTGTGCCCAATCTT 58.096 45.000 0.00 0.00 44.31 2.40
2678 2824 1.904287 TTTTAGCGTGTGCCCAATCT 58.096 45.000 0.00 0.00 44.31 2.40
2679 2825 2.715737 TTTTTAGCGTGTGCCCAATC 57.284 45.000 0.00 0.00 44.31 2.67
2695 2841 2.813754 TGCAGCTTCTGATAGCGTTTTT 59.186 40.909 0.00 0.00 45.82 1.94
2696 2842 2.426522 TGCAGCTTCTGATAGCGTTTT 58.573 42.857 0.00 0.00 45.82 2.43
2697 2843 2.099141 TGCAGCTTCTGATAGCGTTT 57.901 45.000 0.00 0.00 45.82 3.60
2698 2844 2.099141 TTGCAGCTTCTGATAGCGTT 57.901 45.000 0.00 0.00 45.82 4.84
2699 2845 2.099141 TTTGCAGCTTCTGATAGCGT 57.901 45.000 0.00 0.00 45.82 5.07
2700 2846 3.687572 AATTTGCAGCTTCTGATAGCG 57.312 42.857 0.00 0.00 45.82 4.26
2701 2847 4.110482 CCAAATTTGCAGCTTCTGATAGC 58.890 43.478 12.92 4.38 41.53 2.97
2702 2848 4.441079 CCCCAAATTTGCAGCTTCTGATAG 60.441 45.833 12.92 0.00 32.44 2.08
2703 2849 3.448301 CCCCAAATTTGCAGCTTCTGATA 59.552 43.478 12.92 0.00 32.44 2.15
2704 2850 2.235402 CCCCAAATTTGCAGCTTCTGAT 59.765 45.455 12.92 0.00 32.44 2.90
2705 2851 1.619827 CCCCAAATTTGCAGCTTCTGA 59.380 47.619 12.92 0.00 32.44 3.27
2706 2852 1.942586 GCCCCAAATTTGCAGCTTCTG 60.943 52.381 12.92 0.00 34.12 3.02
2707 2853 0.322648 GCCCCAAATTTGCAGCTTCT 59.677 50.000 12.92 0.00 0.00 2.85
2708 2854 1.015607 CGCCCCAAATTTGCAGCTTC 61.016 55.000 21.24 5.52 0.00 3.86
2709 2855 1.004679 CGCCCCAAATTTGCAGCTT 60.005 52.632 21.24 0.00 0.00 3.74
2710 2856 2.658422 CGCCCCAAATTTGCAGCT 59.342 55.556 21.24 0.00 0.00 4.24
2711 2857 3.120385 GCGCCCCAAATTTGCAGC 61.120 61.111 12.92 15.06 0.00 5.25
2712 2858 2.434709 GGCGCCCCAAATTTGCAG 60.435 61.111 18.11 6.96 0.00 4.41
2713 2859 4.370066 CGGCGCCCCAAATTTGCA 62.370 61.111 23.46 0.00 0.00 4.08
2715 2861 2.237534 AATCCGGCGCCCCAAATTTG 62.238 55.000 23.46 11.40 0.00 2.32
2716 2862 0.684805 TAATCCGGCGCCCCAAATTT 60.685 50.000 23.46 8.79 0.00 1.82
2717 2863 1.076632 TAATCCGGCGCCCCAAATT 60.077 52.632 23.46 16.86 0.00 1.82
2718 2864 1.826487 GTAATCCGGCGCCCCAAAT 60.826 57.895 23.46 6.25 0.00 2.32
2719 2865 2.438795 GTAATCCGGCGCCCCAAA 60.439 61.111 23.46 3.69 0.00 3.28
2720 2866 4.841861 CGTAATCCGGCGCCCCAA 62.842 66.667 23.46 6.70 0.00 4.12
2728 2874 3.984765 GAAGCGCGCGTAATCCGG 61.985 66.667 32.35 0.00 36.94 5.14
2729 2875 3.251763 TGAAGCGCGCGTAATCCG 61.252 61.111 32.35 2.81 40.40 4.18
2730 2876 1.962092 TTGTGAAGCGCGCGTAATCC 61.962 55.000 32.35 14.36 0.00 3.01
2731 2877 0.026285 ATTGTGAAGCGCGCGTAATC 59.974 50.000 32.35 24.93 0.00 1.75
2732 2878 0.446222 AATTGTGAAGCGCGCGTAAT 59.554 45.000 32.35 16.27 0.00 1.89
2733 2879 0.236187 AAATTGTGAAGCGCGCGTAA 59.764 45.000 32.35 14.00 0.00 3.18
2734 2880 0.451957 CAAATTGTGAAGCGCGCGTA 60.452 50.000 32.35 13.43 0.00 4.42
2735 2881 1.725625 CAAATTGTGAAGCGCGCGT 60.726 52.632 32.35 24.81 0.00 6.01
2736 2882 3.046460 GCAAATTGTGAAGCGCGCG 62.046 57.895 28.44 28.44 0.00 6.86
2737 2883 2.015627 TGCAAATTGTGAAGCGCGC 61.016 52.632 26.66 26.66 0.00 6.86
2738 2884 0.661187 AGTGCAAATTGTGAAGCGCG 60.661 50.000 0.00 0.00 41.96 6.86
2739 2885 1.978782 GTAGTGCAAATTGTGAAGCGC 59.021 47.619 0.00 0.00 37.74 5.92
2740 2886 2.233355 CGTAGTGCAAATTGTGAAGCG 58.767 47.619 0.00 0.00 0.00 4.68
2741 2887 3.268013 ACGTAGTGCAAATTGTGAAGC 57.732 42.857 0.00 0.00 42.51 3.86
2756 2902 2.668279 GCATGCCCAAGAAAACACGTAG 60.668 50.000 6.36 0.00 0.00 3.51
2757 2903 1.268352 GCATGCCCAAGAAAACACGTA 59.732 47.619 6.36 0.00 0.00 3.57
2758 2904 0.031994 GCATGCCCAAGAAAACACGT 59.968 50.000 6.36 0.00 0.00 4.49
2759 2905 0.031857 TGCATGCCCAAGAAAACACG 59.968 50.000 16.68 0.00 0.00 4.49
2760 2906 2.460757 ATGCATGCCCAAGAAAACAC 57.539 45.000 16.68 0.00 0.00 3.32
2761 2907 3.488778 AAATGCATGCCCAAGAAAACA 57.511 38.095 16.68 0.00 0.00 2.83
2762 2908 4.834357 AAAAATGCATGCCCAAGAAAAC 57.166 36.364 16.68 0.00 0.00 2.43
2763 2909 5.002516 CCTAAAAATGCATGCCCAAGAAAA 58.997 37.500 16.68 0.00 0.00 2.29
2764 2910 4.577875 CCTAAAAATGCATGCCCAAGAAA 58.422 39.130 16.68 0.00 0.00 2.52
2765 2911 3.619487 GCCTAAAAATGCATGCCCAAGAA 60.619 43.478 16.68 0.00 0.00 2.52
2766 2912 2.093553 GCCTAAAAATGCATGCCCAAGA 60.094 45.455 16.68 0.00 0.00 3.02
2767 2913 2.282407 GCCTAAAAATGCATGCCCAAG 58.718 47.619 16.68 4.05 0.00 3.61
2768 2914 1.627329 TGCCTAAAAATGCATGCCCAA 59.373 42.857 16.68 0.00 31.31 4.12
2769 2915 1.273759 TGCCTAAAAATGCATGCCCA 58.726 45.000 16.68 0.00 31.31 5.36
2770 2916 2.625695 ATGCCTAAAAATGCATGCCC 57.374 45.000 16.68 0.00 45.96 5.36
2775 2921 5.410067 GTTTAGCAGATGCCTAAAAATGCA 58.590 37.500 0.14 0.00 43.38 3.96
2776 2922 4.805719 GGTTTAGCAGATGCCTAAAAATGC 59.194 41.667 0.14 0.00 43.38 3.56
2777 2923 5.964758 TGGTTTAGCAGATGCCTAAAAATG 58.035 37.500 0.14 0.00 43.38 2.32
2778 2924 6.398095 GTTGGTTTAGCAGATGCCTAAAAAT 58.602 36.000 0.14 0.00 43.38 1.82
2779 2925 5.563867 CGTTGGTTTAGCAGATGCCTAAAAA 60.564 40.000 0.14 0.00 43.38 1.94
2780 2926 4.083003 CGTTGGTTTAGCAGATGCCTAAAA 60.083 41.667 0.14 0.00 43.38 1.52
2781 2927 3.438781 CGTTGGTTTAGCAGATGCCTAAA 59.561 43.478 0.14 3.76 43.38 1.85
2782 2928 3.006940 CGTTGGTTTAGCAGATGCCTAA 58.993 45.455 0.14 0.00 43.38 2.69
2783 2929 2.027561 ACGTTGGTTTAGCAGATGCCTA 60.028 45.455 0.14 0.00 43.38 3.93
2784 2930 1.271379 ACGTTGGTTTAGCAGATGCCT 60.271 47.619 0.14 0.00 43.38 4.75
2785 2931 1.165270 ACGTTGGTTTAGCAGATGCC 58.835 50.000 0.14 0.00 43.38 4.40
2786 2932 2.584791 CAACGTTGGTTTAGCAGATGC 58.415 47.619 20.71 0.00 36.21 3.91
2787 2933 3.201726 CCAACGTTGGTTTAGCAGATG 57.798 47.619 34.48 8.59 43.43 2.90
2803 2949 3.887335 TTAGTGCGCCGGACCCAAC 62.887 63.158 5.05 0.00 0.00 3.77
2804 2950 2.677765 TTTTAGTGCGCCGGACCCAA 62.678 55.000 5.05 0.00 0.00 4.12
2805 2951 3.179888 TTTTAGTGCGCCGGACCCA 62.180 57.895 5.05 0.00 0.00 4.51
2806 2952 2.358984 TTTTAGTGCGCCGGACCC 60.359 61.111 5.05 0.00 0.00 4.46
2807 2953 1.670083 ACTTTTAGTGCGCCGGACC 60.670 57.895 5.05 0.00 0.00 4.46
2808 2954 1.495951 CACTTTTAGTGCGCCGGAC 59.504 57.895 5.05 0.00 39.62 4.79
2809 2955 3.960237 CACTTTTAGTGCGCCGGA 58.040 55.556 5.05 0.00 39.62 5.14
2817 2963 3.057734 GCGTCACTGTAGCACTTTTAGT 58.942 45.455 0.00 0.00 0.00 2.24
2818 2964 2.090658 CGCGTCACTGTAGCACTTTTAG 59.909 50.000 0.00 0.00 0.00 1.85
2819 2965 2.055838 CGCGTCACTGTAGCACTTTTA 58.944 47.619 0.00 0.00 0.00 1.52
2820 2966 0.859232 CGCGTCACTGTAGCACTTTT 59.141 50.000 0.00 0.00 0.00 2.27
2821 2967 1.557443 GCGCGTCACTGTAGCACTTT 61.557 55.000 8.43 0.00 0.00 2.66
2822 2968 2.022129 GCGCGTCACTGTAGCACTT 61.022 57.895 8.43 0.00 0.00 3.16
2823 2969 1.583495 TAGCGCGTCACTGTAGCACT 61.583 55.000 8.43 0.00 0.00 4.40
2824 2970 0.731514 TTAGCGCGTCACTGTAGCAC 60.732 55.000 8.43 0.00 0.00 4.40
2825 2971 0.038983 TTTAGCGCGTCACTGTAGCA 60.039 50.000 8.43 0.00 0.00 3.49
2826 2972 1.065358 TTTTAGCGCGTCACTGTAGC 58.935 50.000 8.43 0.00 0.00 3.58
2827 2973 2.325761 AGTTTTAGCGCGTCACTGTAG 58.674 47.619 8.43 0.00 0.00 2.74
2828 2974 2.427232 AGTTTTAGCGCGTCACTGTA 57.573 45.000 8.43 0.00 0.00 2.74
2829 2975 2.427232 TAGTTTTAGCGCGTCACTGT 57.573 45.000 8.43 0.00 0.00 3.55
2830 2976 3.991605 AATAGTTTTAGCGCGTCACTG 57.008 42.857 8.43 0.00 0.00 3.66
2831 2977 6.301861 GTTAAAATAGTTTTAGCGCGTCACT 58.698 36.000 8.43 5.76 36.56 3.41
2832 2978 5.221682 CGTTAAAATAGTTTTAGCGCGTCAC 59.778 40.000 8.43 0.00 46.87 3.67
2833 2979 5.307368 CGTTAAAATAGTTTTAGCGCGTCA 58.693 37.500 8.43 0.00 46.87 4.35
2834 2980 5.805823 CGTTAAAATAGTTTTAGCGCGTC 57.194 39.130 8.43 0.00 46.87 5.19
2839 2985 4.325386 TCGCGCGTTAAAATAGTTTTAGC 58.675 39.130 30.98 0.00 36.56 3.09
2840 2986 6.517374 AGTTTCGCGCGTTAAAATAGTTTTAG 59.483 34.615 30.98 0.00 36.56 1.85
2841 2987 6.361899 AGTTTCGCGCGTTAAAATAGTTTTA 58.638 32.000 30.98 1.00 34.19 1.52
2842 2988 5.207033 AGTTTCGCGCGTTAAAATAGTTTT 58.793 33.333 30.98 3.75 36.67 2.43
2843 2989 4.775664 AGTTTCGCGCGTTAAAATAGTTT 58.224 34.783 30.98 5.35 0.00 2.66
2844 2990 4.394099 AGTTTCGCGCGTTAAAATAGTT 57.606 36.364 30.98 7.62 0.00 2.24
2845 2991 4.394099 AAGTTTCGCGCGTTAAAATAGT 57.606 36.364 30.98 6.25 0.00 2.12
2846 2992 5.718577 AAAAGTTTCGCGCGTTAAAATAG 57.281 34.783 30.98 0.00 0.00 1.73
2847 2993 6.796072 ACATAAAAGTTTCGCGCGTTAAAATA 59.204 30.769 30.98 15.70 0.00 1.40
2848 2994 5.626132 ACATAAAAGTTTCGCGCGTTAAAAT 59.374 32.000 30.98 19.80 0.00 1.82
2849 2995 4.968788 ACATAAAAGTTTCGCGCGTTAAAA 59.031 33.333 30.98 20.02 0.00 1.52
2850 2996 4.376279 CACATAAAAGTTTCGCGCGTTAAA 59.624 37.500 30.98 20.80 0.00 1.52
2851 2997 3.901290 CACATAAAAGTTTCGCGCGTTAA 59.099 39.130 30.98 21.49 0.00 2.01
2852 2998 3.471495 CACATAAAAGTTTCGCGCGTTA 58.529 40.909 30.98 19.45 0.00 3.18
2853 2999 2.303537 CACATAAAAGTTTCGCGCGTT 58.696 42.857 30.98 17.79 0.00 4.84
2854 3000 1.945207 CACATAAAAGTTTCGCGCGT 58.055 45.000 30.98 11.22 0.00 6.01
2855 3001 0.628289 GCACATAAAAGTTTCGCGCG 59.372 50.000 26.76 26.76 0.00 6.86
2856 3002 0.981956 GGCACATAAAAGTTTCGCGC 59.018 50.000 0.00 0.00 0.00 6.86
2857 3003 2.241722 CAGGCACATAAAAGTTTCGCG 58.758 47.619 0.00 0.00 0.00 5.87
2858 3004 3.282831 ACAGGCACATAAAAGTTTCGC 57.717 42.857 0.00 0.00 0.00 4.70
2859 3005 4.854399 TCAACAGGCACATAAAAGTTTCG 58.146 39.130 0.00 0.00 0.00 3.46
2860 3006 6.503524 TCTTCAACAGGCACATAAAAGTTTC 58.496 36.000 0.00 0.00 0.00 2.78
2861 3007 6.463995 TCTTCAACAGGCACATAAAAGTTT 57.536 33.333 0.00 0.00 0.00 2.66
2862 3008 6.449698 CATCTTCAACAGGCACATAAAAGTT 58.550 36.000 0.00 0.00 0.00 2.66
2863 3009 5.565439 GCATCTTCAACAGGCACATAAAAGT 60.565 40.000 0.00 0.00 0.00 2.66
2864 3010 4.860907 GCATCTTCAACAGGCACATAAAAG 59.139 41.667 0.00 0.00 0.00 2.27
2865 3011 4.523943 AGCATCTTCAACAGGCACATAAAA 59.476 37.500 0.00 0.00 0.00 1.52
2866 3012 4.081406 AGCATCTTCAACAGGCACATAAA 58.919 39.130 0.00 0.00 0.00 1.40
2867 3013 3.689347 AGCATCTTCAACAGGCACATAA 58.311 40.909 0.00 0.00 0.00 1.90
2868 3014 3.273434 GAGCATCTTCAACAGGCACATA 58.727 45.455 0.00 0.00 0.00 2.29
2869 3015 2.089980 GAGCATCTTCAACAGGCACAT 58.910 47.619 0.00 0.00 0.00 3.21
2870 3016 1.527034 GAGCATCTTCAACAGGCACA 58.473 50.000 0.00 0.00 0.00 4.57
2883 3029 7.466590 GCAAAACCTTACTCATCTAAGAGCATC 60.467 40.741 0.00 0.00 39.26 3.91
2884 3030 6.317391 GCAAAACCTTACTCATCTAAGAGCAT 59.683 38.462 0.00 0.00 39.26 3.79
2885 3031 5.643777 GCAAAACCTTACTCATCTAAGAGCA 59.356 40.000 0.00 0.00 39.26 4.26
2886 3032 5.877564 AGCAAAACCTTACTCATCTAAGAGC 59.122 40.000 0.00 0.00 39.26 4.09
2887 3033 6.536941 GGAGCAAAACCTTACTCATCTAAGAG 59.463 42.308 0.00 0.00 41.44 2.85
2888 3034 6.213600 AGGAGCAAAACCTTACTCATCTAAGA 59.786 38.462 0.00 0.00 33.55 2.10
2889 3035 6.410540 AGGAGCAAAACCTTACTCATCTAAG 58.589 40.000 0.00 0.00 33.55 2.18
2890 3036 6.213600 AGAGGAGCAAAACCTTACTCATCTAA 59.786 38.462 4.40 0.00 45.48 2.10
2891 3037 5.721960 AGAGGAGCAAAACCTTACTCATCTA 59.278 40.000 4.40 0.00 45.48 1.98
2892 3038 4.534103 AGAGGAGCAAAACCTTACTCATCT 59.466 41.667 0.59 0.59 43.34 2.90
2893 3039 4.837972 AGAGGAGCAAAACCTTACTCATC 58.162 43.478 0.00 0.00 39.57 2.92
2894 3040 4.917906 AGAGGAGCAAAACCTTACTCAT 57.082 40.909 0.00 0.00 37.93 2.90
2895 3041 5.512576 GGTTAGAGGAGCAAAACCTTACTCA 60.513 44.000 0.00 0.00 38.66 3.41
3009 3155 6.437162 AGAGAGTGAGATTCTTTTACTCAGCT 59.563 38.462 19.75 15.48 40.55 4.24
3040 3188 0.682855 CGGAGAAGAGGCAGAGGAGT 60.683 60.000 0.00 0.00 0.00 3.85
3103 3256 4.883354 CATTGCGGAGGGAGGGGC 62.883 72.222 0.00 0.00 0.00 5.80
3104 3257 4.195334 CCATTGCGGAGGGAGGGG 62.195 72.222 0.00 0.00 36.56 4.79
3105 3258 4.883354 GCCATTGCGGAGGGAGGG 62.883 72.222 0.82 0.00 36.56 4.30
3106 3259 3.801997 AGCCATTGCGGAGGGAGG 61.802 66.667 0.82 0.00 44.33 4.30
3107 3260 2.515523 CAGCCATTGCGGAGGGAG 60.516 66.667 0.82 0.00 44.33 4.30
3108 3261 4.113815 CCAGCCATTGCGGAGGGA 62.114 66.667 0.82 0.00 44.33 4.20
3291 3452 2.876550 CCAGACGTCGATGTATGTCCTA 59.123 50.000 25.95 0.00 36.26 2.94
3305 3466 4.687215 ATGCGCACTGCCAGACGT 62.687 61.111 14.90 0.00 45.60 4.34
3326 3487 1.690219 GATCTCCGCCACCCATGTCT 61.690 60.000 0.00 0.00 0.00 3.41
3355 3516 0.393077 CACTTCCTCGTGTGGGTCTT 59.607 55.000 0.00 0.00 0.00 3.01
3379 3540 0.968901 TCCGCCATGTAGAACGTCCT 60.969 55.000 0.00 0.00 0.00 3.85
3382 3543 1.153628 GCTCCGCCATGTAGAACGT 60.154 57.895 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.