Multiple sequence alignment - TraesCS6D01G365900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G365900 chr6D 100.000 3280 0 0 1 3280 454733240 454736519 0.000000e+00 6058.0
1 TraesCS6D01G365900 chr6D 85.388 1314 151 17 986 2282 454926912 454925623 0.000000e+00 1325.0
2 TraesCS6D01G365900 chr6D 77.196 1070 194 37 1050 2108 454749440 454748410 2.190000e-161 579.0
3 TraesCS6D01G365900 chr6D 77.193 1083 181 48 1050 2108 454658907 454657867 3.670000e-159 571.0
4 TraesCS6D01G365900 chr6D 85.487 503 60 12 1 497 412835123 412834628 2.260000e-141 512.0
5 TraesCS6D01G365900 chr6D 77.338 909 159 25 1216 2108 454673004 454673881 8.180000e-136 494.0
6 TraesCS6D01G365900 chr6D 77.060 619 113 18 1497 2108 456252360 456252956 2.440000e-86 329.0
7 TraesCS6D01G365900 chr6D 95.652 92 4 0 2400 2491 157328110 157328019 7.330000e-32 148.0
8 TraesCS6D01G365900 chr6D 88.235 102 12 0 1050 1151 454662478 454662579 4.440000e-24 122.0
9 TraesCS6D01G365900 chr6B 93.402 1940 83 19 487 2414 691795762 691793856 0.000000e+00 2832.0
10 TraesCS6D01G365900 chr6B 84.509 1304 169 20 986 2272 692016851 692015564 0.000000e+00 1258.0
11 TraesCS6D01G365900 chr6B 78.065 1085 189 34 1050 2108 691633389 691632328 9.920000e-180 640.0
12 TraesCS6D01G365900 chr6B 75.945 1085 192 44 1050 2108 691783806 691782765 8.180000e-136 494.0
13 TraesCS6D01G365900 chr6B 91.033 368 26 7 2522 2889 691793861 691793501 1.060000e-134 490.0
14 TraesCS6D01G365900 chr6B 86.402 478 26 17 2837 3280 691793464 691792992 1.370000e-133 486.0
15 TraesCS6D01G365900 chr6B 83.170 511 55 20 1 486 122673114 122673618 3.890000e-119 438.0
16 TraesCS6D01G365900 chr6B 76.898 619 114 18 1497 2108 691991465 691990869 1.140000e-84 324.0
17 TraesCS6D01G365900 chr6A 92.862 1639 71 16 713 2348 601166612 601165017 0.000000e+00 2337.0
18 TraesCS6D01G365900 chr6A 85.323 1315 167 14 988 2283 601211937 601210630 0.000000e+00 1336.0
19 TraesCS6D01G365900 chr6A 91.250 640 37 12 2491 3115 601165017 601164382 0.000000e+00 854.0
20 TraesCS6D01G365900 chr6A 75.023 1097 188 58 1050 2108 601033049 601032001 2.340000e-116 429.0
21 TraesCS6D01G365900 chr6A 78.049 615 102 24 1050 1643 600913346 600912744 1.120000e-94 357.0
22 TraesCS6D01G365900 chr6A 77.067 641 115 25 1050 1667 600978114 600977483 1.130000e-89 340.0
23 TraesCS6D01G365900 chr6A 95.652 92 4 0 2397 2488 7170110 7170201 7.330000e-32 148.0
24 TraesCS6D01G365900 chr6A 89.216 102 11 0 1050 1151 601138262 601138161 9.550000e-26 128.0
25 TraesCS6D01G365900 chr7B 84.818 494 64 8 1 486 152805939 152805449 1.370000e-133 486.0
26 TraesCS6D01G365900 chr7B 80.868 507 55 23 1 490 254105807 254106288 8.650000e-96 361.0
27 TraesCS6D01G365900 chr7D 84.486 477 46 16 1 451 277724095 277723621 2.320000e-121 446.0
28 TraesCS6D01G365900 chr7D 95.455 88 4 0 2401 2488 343751928 343752015 1.230000e-29 141.0
29 TraesCS6D01G365900 chr3B 83.041 513 57 13 1 486 123446024 123446533 3.890000e-119 438.0
30 TraesCS6D01G365900 chr3B 79.843 511 62 14 3 486 577780713 577780217 5.240000e-88 335.0
31 TraesCS6D01G365900 chr3B 77.778 144 20 11 2809 2945 19069019 19069157 9.760000e-11 78.7
32 TraesCS6D01G365900 chr3B 96.875 32 1 0 2625 2656 6216130 6216099 2.000000e-03 54.7
33 TraesCS6D01G365900 chr5B 82.296 514 59 19 1 487 607214982 607214474 1.820000e-112 416.0
34 TraesCS6D01G365900 chr5B 94.505 91 5 0 2399 2489 187861670 187861760 1.230000e-29 141.0
35 TraesCS6D01G365900 chr5B 85.000 100 15 0 1052 1151 588832849 588832948 5.790000e-18 102.0
36 TraesCS6D01G365900 chr2A 92.440 291 18 4 1 288 515446214 515446503 2.360000e-111 412.0
37 TraesCS6D01G365900 chr1D 81.128 514 51 24 1 486 264819832 264819337 1.440000e-98 370.0
38 TraesCS6D01G365900 chr1D 80.587 443 72 12 54 486 238193044 238192606 2.440000e-86 329.0
39 TraesCS6D01G365900 chr5D 79.760 499 72 20 1 486 442037918 442038400 5.240000e-88 335.0
40 TraesCS6D01G365900 chr5D 97.701 87 2 0 2401 2487 495161389 495161475 2.040000e-32 150.0
41 TraesCS6D01G365900 chr5A 78.643 501 77 17 1 486 7419631 7420116 4.110000e-79 305.0
42 TraesCS6D01G365900 chr5A 91.589 107 9 0 2380 2486 547393308 547393414 7.330000e-32 148.0
43 TraesCS6D01G365900 chr7A 80.841 214 34 7 277 486 163943452 163943662 9.420000e-36 161.0
44 TraesCS6D01G365900 chr1B 94.898 98 5 0 2394 2491 453132590 453132493 1.580000e-33 154.0
45 TraesCS6D01G365900 chr3A 93.069 101 6 1 2399 2498 199136744 199136844 2.640000e-31 147.0
46 TraesCS6D01G365900 chr3A 96.591 88 3 0 2400 2487 208070019 208069932 2.640000e-31 147.0
47 TraesCS6D01G365900 chrUn 91.489 47 4 0 2620 2666 276884786 276884832 7.600000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G365900 chr6D 454733240 454736519 3279 False 6058.000000 6058 100.000 1 3280 1 chr6D.!!$F3 3279
1 TraesCS6D01G365900 chr6D 454925623 454926912 1289 True 1325.000000 1325 85.388 986 2282 1 chr6D.!!$R5 1296
2 TraesCS6D01G365900 chr6D 454748410 454749440 1030 True 579.000000 579 77.196 1050 2108 1 chr6D.!!$R4 1058
3 TraesCS6D01G365900 chr6D 454657867 454658907 1040 True 571.000000 571 77.193 1050 2108 1 chr6D.!!$R3 1058
4 TraesCS6D01G365900 chr6D 454673004 454673881 877 False 494.000000 494 77.338 1216 2108 1 chr6D.!!$F2 892
5 TraesCS6D01G365900 chr6D 456252360 456252956 596 False 329.000000 329 77.060 1497 2108 1 chr6D.!!$F4 611
6 TraesCS6D01G365900 chr6B 691792992 691795762 2770 True 1269.333333 2832 90.279 487 3280 3 chr6B.!!$R5 2793
7 TraesCS6D01G365900 chr6B 692015564 692016851 1287 True 1258.000000 1258 84.509 986 2272 1 chr6B.!!$R4 1286
8 TraesCS6D01G365900 chr6B 691632328 691633389 1061 True 640.000000 640 78.065 1050 2108 1 chr6B.!!$R1 1058
9 TraesCS6D01G365900 chr6B 691782765 691783806 1041 True 494.000000 494 75.945 1050 2108 1 chr6B.!!$R2 1058
10 TraesCS6D01G365900 chr6B 122673114 122673618 504 False 438.000000 438 83.170 1 486 1 chr6B.!!$F1 485
11 TraesCS6D01G365900 chr6B 691990869 691991465 596 True 324.000000 324 76.898 1497 2108 1 chr6B.!!$R3 611
12 TraesCS6D01G365900 chr6A 601164382 601166612 2230 True 1595.500000 2337 92.056 713 3115 2 chr6A.!!$R6 2402
13 TraesCS6D01G365900 chr6A 601210630 601211937 1307 True 1336.000000 1336 85.323 988 2283 1 chr6A.!!$R5 1295
14 TraesCS6D01G365900 chr6A 601032001 601033049 1048 True 429.000000 429 75.023 1050 2108 1 chr6A.!!$R3 1058
15 TraesCS6D01G365900 chr6A 600912744 600913346 602 True 357.000000 357 78.049 1050 1643 1 chr6A.!!$R1 593
16 TraesCS6D01G365900 chr6A 600977483 600978114 631 True 340.000000 340 77.067 1050 1667 1 chr6A.!!$R2 617
17 TraesCS6D01G365900 chr3B 123446024 123446533 509 False 438.000000 438 83.041 1 486 1 chr3B.!!$F2 485
18 TraesCS6D01G365900 chr5B 607214474 607214982 508 True 416.000000 416 82.296 1 487 1 chr5B.!!$R1 486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
392 395 0.029035 GCTAAGACGCGCTACTGCTA 59.971 55.0 5.73 0.0 36.97 3.49 F
398 401 0.038526 ACGCGCTACTGCTACAAGTT 60.039 50.0 5.73 0.0 36.97 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2237 2402 0.033504 GCACGATGACGGGGATATGT 59.966 55.000 0.0 0.0 43.78 2.29 R
2404 2569 7.612677 ACACTCTTACATTAGTTTACAGAGGG 58.387 38.462 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 46 5.034797 CGATGTAGTTGCAAGTATTCGAGA 58.965 41.667 28.12 8.08 30.44 4.04
44 47 5.052304 CGATGTAGTTGCAAGTATTCGAGAC 60.052 44.000 28.12 15.21 30.44 3.36
45 48 5.128992 TGTAGTTGCAAGTATTCGAGACA 57.871 39.130 16.77 8.30 0.00 3.41
46 49 5.720202 TGTAGTTGCAAGTATTCGAGACAT 58.280 37.500 16.77 0.00 0.00 3.06
47 50 5.576774 TGTAGTTGCAAGTATTCGAGACATG 59.423 40.000 16.77 0.00 0.00 3.21
48 51 4.569943 AGTTGCAAGTATTCGAGACATGT 58.430 39.130 4.57 0.00 0.00 3.21
49 52 4.627467 AGTTGCAAGTATTCGAGACATGTC 59.373 41.667 18.47 18.47 0.00 3.06
50 53 4.186856 TGCAAGTATTCGAGACATGTCA 57.813 40.909 27.02 7.35 0.00 3.58
51 54 4.758688 TGCAAGTATTCGAGACATGTCAT 58.241 39.130 27.02 14.16 0.00 3.06
52 55 5.901552 TGCAAGTATTCGAGACATGTCATA 58.098 37.500 27.02 13.17 0.00 2.15
53 56 6.337356 TGCAAGTATTCGAGACATGTCATAA 58.663 36.000 27.02 17.20 0.00 1.90
54 57 6.255670 TGCAAGTATTCGAGACATGTCATAAC 59.744 38.462 27.02 14.97 0.00 1.89
55 58 6.477033 GCAAGTATTCGAGACATGTCATAACT 59.523 38.462 27.02 16.71 0.00 2.24
56 59 7.010552 GCAAGTATTCGAGACATGTCATAACTT 59.989 37.037 27.02 20.63 0.00 2.66
57 60 7.993821 AGTATTCGAGACATGTCATAACTTG 57.006 36.000 27.02 10.38 36.78 3.16
58 61 7.548097 AGTATTCGAGACATGTCATAACTTGT 58.452 34.615 27.02 4.07 44.06 3.16
59 62 8.683615 AGTATTCGAGACATGTCATAACTTGTA 58.316 33.333 27.02 5.01 42.13 2.41
60 63 9.464714 GTATTCGAGACATGTCATAACTTGTAT 57.535 33.333 27.02 11.43 42.13 2.29
61 64 7.987268 TTCGAGACATGTCATAACTTGTATC 57.013 36.000 27.02 10.86 43.21 2.24
63 66 6.204075 GAGACATGTCATAACTTGTATCGC 57.796 41.667 27.02 0.00 42.13 4.58
64 67 5.907207 AGACATGTCATAACTTGTATCGCT 58.093 37.500 27.02 0.00 42.13 4.93
65 68 7.039313 AGACATGTCATAACTTGTATCGCTA 57.961 36.000 27.02 0.00 42.13 4.26
66 69 7.661968 AGACATGTCATAACTTGTATCGCTAT 58.338 34.615 27.02 0.00 42.13 2.97
67 70 8.144478 AGACATGTCATAACTTGTATCGCTATT 58.856 33.333 27.02 0.00 42.13 1.73
68 71 8.662781 ACATGTCATAACTTGTATCGCTATTT 57.337 30.769 0.00 0.00 40.78 1.40
69 72 8.765219 ACATGTCATAACTTGTATCGCTATTTC 58.235 33.333 0.00 0.00 40.78 2.17
70 73 7.389603 TGTCATAACTTGTATCGCTATTTCG 57.610 36.000 0.00 0.00 0.00 3.46
71 74 7.197703 TGTCATAACTTGTATCGCTATTTCGA 58.802 34.615 0.00 0.00 43.09 3.71
72 75 7.378728 TGTCATAACTTGTATCGCTATTTCGAG 59.621 37.037 0.00 0.00 42.14 4.04
73 76 7.590322 GTCATAACTTGTATCGCTATTTCGAGA 59.410 37.037 0.00 0.00 42.14 4.04
74 77 8.297426 TCATAACTTGTATCGCTATTTCGAGAT 58.703 33.333 0.00 0.00 42.14 2.75
75 78 6.755461 AACTTGTATCGCTATTTCGAGATG 57.245 37.500 0.00 0.00 42.14 2.90
76 79 5.223382 ACTTGTATCGCTATTTCGAGATGG 58.777 41.667 0.00 0.00 42.14 3.51
77 80 4.848562 TGTATCGCTATTTCGAGATGGT 57.151 40.909 0.00 0.00 42.14 3.55
78 81 4.546570 TGTATCGCTATTTCGAGATGGTG 58.453 43.478 6.53 6.53 42.14 4.17
79 82 4.277423 TGTATCGCTATTTCGAGATGGTGA 59.723 41.667 16.06 16.06 42.14 4.02
80 83 3.079960 TCGCTATTTCGAGATGGTGAC 57.920 47.619 10.85 0.00 34.09 3.67
81 84 1.781429 CGCTATTTCGAGATGGTGACG 59.219 52.381 7.00 0.00 0.00 4.35
82 85 2.540973 CGCTATTTCGAGATGGTGACGA 60.541 50.000 7.00 0.00 0.00 4.20
83 86 3.046390 GCTATTTCGAGATGGTGACGAG 58.954 50.000 0.00 0.00 37.36 4.18
84 87 3.243101 GCTATTTCGAGATGGTGACGAGA 60.243 47.826 0.00 0.00 37.36 4.04
85 88 2.921634 TTTCGAGATGGTGACGAGAG 57.078 50.000 0.00 0.00 37.36 3.20
86 89 2.109425 TTCGAGATGGTGACGAGAGA 57.891 50.000 0.00 0.00 37.36 3.10
87 90 1.370609 TCGAGATGGTGACGAGAGAC 58.629 55.000 0.00 0.00 0.00 3.36
88 91 1.087501 CGAGATGGTGACGAGAGACA 58.912 55.000 0.00 0.00 0.00 3.41
89 92 1.673400 CGAGATGGTGACGAGAGACAT 59.327 52.381 0.00 0.00 38.19 3.06
90 93 2.286713 CGAGATGGTGACGAGAGACATC 60.287 54.545 0.00 0.00 38.19 3.06
94 97 3.961480 TGGTGACGAGAGACATCATTT 57.039 42.857 0.00 0.00 41.68 2.32
95 98 4.271696 TGGTGACGAGAGACATCATTTT 57.728 40.909 0.00 0.00 41.68 1.82
96 99 3.996363 TGGTGACGAGAGACATCATTTTG 59.004 43.478 0.00 0.00 41.68 2.44
97 100 3.997021 GGTGACGAGAGACATCATTTTGT 59.003 43.478 0.00 0.00 36.88 2.83
98 101 4.143030 GGTGACGAGAGACATCATTTTGTG 60.143 45.833 0.00 0.00 36.88 3.33
99 102 4.449068 GTGACGAGAGACATCATTTTGTGT 59.551 41.667 0.00 0.00 38.19 3.72
100 103 5.050091 GTGACGAGAGACATCATTTTGTGTT 60.050 40.000 0.00 0.00 38.19 3.32
101 104 5.050159 TGACGAGAGACATCATTTTGTGTTG 60.050 40.000 0.00 0.00 34.40 3.33
102 105 4.214119 ACGAGAGACATCATTTTGTGTTGG 59.786 41.667 0.00 0.00 32.86 3.77
103 106 4.452114 CGAGAGACATCATTTTGTGTTGGA 59.548 41.667 0.00 0.00 32.86 3.53
104 107 5.122869 CGAGAGACATCATTTTGTGTTGGAT 59.877 40.000 0.00 0.00 32.86 3.41
105 108 6.263516 AGAGACATCATTTTGTGTTGGATG 57.736 37.500 0.00 0.00 40.78 3.51
106 109 6.005823 AGAGACATCATTTTGTGTTGGATGA 58.994 36.000 6.91 0.00 38.87 2.92
107 110 6.662234 AGAGACATCATTTTGTGTTGGATGAT 59.338 34.615 6.91 0.00 39.21 2.45
114 117 9.758651 ATCATTTTGTGTTGGATGATGATTATG 57.241 29.630 0.00 0.00 37.72 1.90
115 118 8.968969 TCATTTTGTGTTGGATGATGATTATGA 58.031 29.630 0.00 0.00 0.00 2.15
116 119 9.758651 CATTTTGTGTTGGATGATGATTATGAT 57.241 29.630 0.00 0.00 0.00 2.45
117 120 9.758651 ATTTTGTGTTGGATGATGATTATGATG 57.241 29.630 0.00 0.00 0.00 3.07
118 121 8.522542 TTTGTGTTGGATGATGATTATGATGA 57.477 30.769 0.00 0.00 0.00 2.92
119 122 8.700439 TTGTGTTGGATGATGATTATGATGAT 57.300 30.769 0.00 0.00 0.00 2.45
120 123 8.106247 TGTGTTGGATGATGATTATGATGATG 57.894 34.615 0.00 0.00 0.00 3.07
121 124 7.940137 TGTGTTGGATGATGATTATGATGATGA 59.060 33.333 0.00 0.00 0.00 2.92
122 125 8.235226 GTGTTGGATGATGATTATGATGATGAC 58.765 37.037 0.00 0.00 0.00 3.06
123 126 7.940137 TGTTGGATGATGATTATGATGATGACA 59.060 33.333 0.00 0.00 0.00 3.58
124 127 8.957466 GTTGGATGATGATTATGATGATGACAT 58.043 33.333 0.00 0.00 39.67 3.06
138 141 9.794719 ATGATGATGACATAATTTGATGAGACT 57.205 29.630 0.00 0.00 36.82 3.24
190 193 9.914131 TTTGTATGTGTATGATATGCTAGAGAC 57.086 33.333 0.00 0.00 0.00 3.36
191 194 8.870075 TGTATGTGTATGATATGCTAGAGACT 57.130 34.615 0.00 0.00 0.00 3.24
192 195 9.959721 TGTATGTGTATGATATGCTAGAGACTA 57.040 33.333 0.00 0.00 0.00 2.59
196 199 8.246871 TGTGTATGATATGCTAGAGACTATTGC 58.753 37.037 0.00 0.00 0.00 3.56
197 200 8.246871 GTGTATGATATGCTAGAGACTATTGCA 58.753 37.037 8.60 8.60 38.05 4.08
198 201 8.975295 TGTATGATATGCTAGAGACTATTGCAT 58.025 33.333 19.99 19.99 44.93 3.96
204 207 7.736447 ATGCTAGAGACTATTGCATAAAACC 57.264 36.000 15.80 0.00 41.75 3.27
205 208 6.889198 TGCTAGAGACTATTGCATAAAACCT 58.111 36.000 1.98 0.00 0.00 3.50
206 209 6.763135 TGCTAGAGACTATTGCATAAAACCTG 59.237 38.462 1.98 0.00 0.00 4.00
207 210 6.763610 GCTAGAGACTATTGCATAAAACCTGT 59.236 38.462 0.00 0.00 0.00 4.00
208 211 7.926555 GCTAGAGACTATTGCATAAAACCTGTA 59.073 37.037 0.00 0.00 0.00 2.74
209 212 9.250624 CTAGAGACTATTGCATAAAACCTGTAC 57.749 37.037 0.00 0.00 0.00 2.90
210 213 7.620880 AGAGACTATTGCATAAAACCTGTACA 58.379 34.615 0.00 0.00 0.00 2.90
211 214 8.100791 AGAGACTATTGCATAAAACCTGTACAA 58.899 33.333 0.00 0.00 0.00 2.41
212 215 8.630054 AGACTATTGCATAAAACCTGTACAAA 57.370 30.769 0.00 0.00 0.00 2.83
213 216 9.243105 AGACTATTGCATAAAACCTGTACAAAT 57.757 29.630 0.00 0.00 0.00 2.32
218 221 9.988815 ATTGCATAAAACCTGTACAAATACAAA 57.011 25.926 0.00 0.00 40.84 2.83
219 222 9.469807 TTGCATAAAACCTGTACAAATACAAAG 57.530 29.630 0.00 0.00 40.84 2.77
220 223 8.851145 TGCATAAAACCTGTACAAATACAAAGA 58.149 29.630 0.00 0.00 40.84 2.52
221 224 9.685828 GCATAAAACCTGTACAAATACAAAGAA 57.314 29.630 0.00 0.00 40.84 2.52
228 231 9.855021 ACCTGTACAAATACAAAGAAAATATGC 57.145 29.630 0.00 0.00 40.84 3.14
229 232 9.853555 CCTGTACAAATACAAAGAAAATATGCA 57.146 29.630 0.00 0.00 40.84 3.96
265 268 9.503427 AAAATCAGAAACTAATAACAATAGCGC 57.497 29.630 0.00 0.00 0.00 5.92
266 269 8.438676 AATCAGAAACTAATAACAATAGCGCT 57.561 30.769 17.26 17.26 0.00 5.92
267 270 7.234187 TCAGAAACTAATAACAATAGCGCTG 57.766 36.000 22.90 6.92 0.00 5.18
268 271 6.257849 TCAGAAACTAATAACAATAGCGCTGG 59.742 38.462 22.90 12.21 0.00 4.85
269 272 5.527582 AGAAACTAATAACAATAGCGCTGGG 59.472 40.000 22.90 11.81 0.00 4.45
270 273 4.417426 ACTAATAACAATAGCGCTGGGT 57.583 40.909 22.90 12.53 0.00 4.51
271 274 5.540400 ACTAATAACAATAGCGCTGGGTA 57.460 39.130 22.90 12.96 0.00 3.69
272 275 6.110411 ACTAATAACAATAGCGCTGGGTAT 57.890 37.500 22.90 14.75 38.45 2.73
273 276 5.932303 ACTAATAACAATAGCGCTGGGTATG 59.068 40.000 22.90 13.56 36.96 2.39
274 277 2.710096 AACAATAGCGCTGGGTATGT 57.290 45.000 22.90 14.22 36.96 2.29
275 278 2.710096 ACAATAGCGCTGGGTATGTT 57.290 45.000 22.90 0.00 36.96 2.71
276 279 2.561569 ACAATAGCGCTGGGTATGTTC 58.438 47.619 22.90 0.00 36.96 3.18
277 280 2.170607 ACAATAGCGCTGGGTATGTTCT 59.829 45.455 22.90 0.00 36.96 3.01
278 281 3.206150 CAATAGCGCTGGGTATGTTCTT 58.794 45.455 22.90 0.00 36.96 2.52
279 282 4.141801 ACAATAGCGCTGGGTATGTTCTTA 60.142 41.667 22.90 0.00 36.96 2.10
280 283 2.604046 AGCGCTGGGTATGTTCTTAG 57.396 50.000 10.39 0.00 0.00 2.18
281 284 0.938008 GCGCTGGGTATGTTCTTAGC 59.062 55.000 0.00 0.00 0.00 3.09
282 285 1.742411 GCGCTGGGTATGTTCTTAGCA 60.742 52.381 0.00 0.00 0.00 3.49
283 286 2.205074 CGCTGGGTATGTTCTTAGCAG 58.795 52.381 0.00 0.00 0.00 4.24
284 287 2.418746 CGCTGGGTATGTTCTTAGCAGT 60.419 50.000 0.00 0.00 0.00 4.40
285 288 3.181479 CGCTGGGTATGTTCTTAGCAGTA 60.181 47.826 0.00 0.00 0.00 2.74
286 289 4.372656 GCTGGGTATGTTCTTAGCAGTAG 58.627 47.826 0.00 0.00 0.00 2.57
287 290 4.372656 CTGGGTATGTTCTTAGCAGTAGC 58.627 47.826 0.00 0.00 42.56 3.58
304 307 7.900299 GCAGTAGCTAGCTTTAAAATAAAGC 57.100 36.000 24.88 21.40 44.01 3.51
305 308 6.629252 GCAGTAGCTAGCTTTAAAATAAAGCG 59.371 38.462 24.88 13.90 45.98 4.68
306 309 8.658736 GCAGTAGCTAGCTTTAAAATAAAGCGC 61.659 40.741 24.88 20.32 45.98 5.92
312 315 5.606335 GCTTTAAAATAAAGCGCTACAGC 57.394 39.130 12.05 2.98 42.46 4.40
322 325 2.141535 GCGCTACAGCTATTAGCAGT 57.858 50.000 20.85 17.06 45.56 4.40
323 326 3.284323 GCGCTACAGCTATTAGCAGTA 57.716 47.619 20.85 17.25 45.56 2.74
329 332 2.431057 ACAGCTATTAGCAGTAGCGGTT 59.569 45.455 17.59 0.00 46.48 4.44
330 333 3.118738 ACAGCTATTAGCAGTAGCGGTTT 60.119 43.478 17.59 0.00 46.48 3.27
331 334 4.098960 ACAGCTATTAGCAGTAGCGGTTTA 59.901 41.667 17.59 0.00 46.48 2.01
332 335 5.736492 ACAGCTATTAGCAGTAGCGGTTTAG 60.736 44.000 17.59 0.00 46.48 1.85
333 336 8.078250 ACAGCTATTAGCAGTAGCGGTTTAGT 62.078 42.308 17.59 4.12 46.48 2.24
334 337 8.814553 ACAGCTATTAGCAGTAGCGGTTTAGTA 61.815 40.741 17.59 0.00 46.48 1.82
338 341 3.985912 GCAGTAGCGGTTTAGTAACAC 57.014 47.619 0.00 0.00 35.92 3.32
339 342 2.343544 GCAGTAGCGGTTTAGTAACACG 59.656 50.000 0.00 2.01 35.92 4.49
340 343 3.825308 CAGTAGCGGTTTAGTAACACGA 58.175 45.455 9.01 0.00 35.92 4.35
341 344 3.850273 CAGTAGCGGTTTAGTAACACGAG 59.150 47.826 9.01 0.00 35.92 4.18
342 345 1.706443 AGCGGTTTAGTAACACGAGC 58.294 50.000 9.01 7.47 35.92 5.03
343 346 1.271656 AGCGGTTTAGTAACACGAGCT 59.728 47.619 9.01 0.00 35.92 4.09
344 347 2.489329 AGCGGTTTAGTAACACGAGCTA 59.511 45.455 9.01 0.00 35.92 3.32
345 348 2.595977 GCGGTTTAGTAACACGAGCTAC 59.404 50.000 9.01 0.00 35.92 3.58
346 349 3.671702 GCGGTTTAGTAACACGAGCTACT 60.672 47.826 9.01 1.63 35.92 2.57
347 350 3.850273 CGGTTTAGTAACACGAGCTACTG 59.150 47.826 6.23 0.00 35.92 2.74
348 351 3.611549 GGTTTAGTAACACGAGCTACTGC 59.388 47.826 6.23 0.00 35.92 4.40
349 352 4.483311 GTTTAGTAACACGAGCTACTGCT 58.517 43.478 6.23 0.00 42.18 4.24
350 353 4.323868 GTTTAGTAACACGAGCTACTGCTG 59.676 45.833 6.23 0.00 40.80 4.41
351 354 7.121861 GTTTAGTAACACGAGCTACTGCTGC 62.122 48.000 6.23 0.00 40.80 5.25
363 366 5.940603 GCTACTGCTGCATATAGATAACG 57.059 43.478 19.63 1.83 36.03 3.18
364 367 4.800993 GCTACTGCTGCATATAGATAACGG 59.199 45.833 19.63 1.38 36.03 4.44
365 368 4.873746 ACTGCTGCATATAGATAACGGT 57.126 40.909 1.31 0.00 0.00 4.83
366 369 5.977489 ACTGCTGCATATAGATAACGGTA 57.023 39.130 1.31 0.00 0.00 4.02
367 370 5.955488 ACTGCTGCATATAGATAACGGTAG 58.045 41.667 1.31 0.00 0.00 3.18
368 371 4.744570 TGCTGCATATAGATAACGGTAGC 58.255 43.478 0.00 0.00 0.00 3.58
369 372 3.791887 GCTGCATATAGATAACGGTAGCG 59.208 47.826 13.69 13.69 0.00 4.26
370 373 3.766151 TGCATATAGATAACGGTAGCGC 58.234 45.455 15.35 0.00 0.00 5.92
371 374 3.191791 TGCATATAGATAACGGTAGCGCA 59.808 43.478 15.35 2.59 0.00 6.09
372 375 3.791887 GCATATAGATAACGGTAGCGCAG 59.208 47.826 15.35 0.00 0.00 5.18
373 376 4.352039 CATATAGATAACGGTAGCGCAGG 58.648 47.826 15.35 0.00 0.00 4.85
374 377 0.313043 TAGATAACGGTAGCGCAGGC 59.687 55.000 15.35 1.93 40.37 4.85
386 389 2.104331 GCAGGCTAAGACGCGCTA 59.896 61.111 5.73 0.00 0.00 4.26
387 390 2.231618 GCAGGCTAAGACGCGCTAC 61.232 63.158 5.73 0.00 0.00 3.58
388 391 1.433879 CAGGCTAAGACGCGCTACT 59.566 57.895 5.73 0.00 0.00 2.57
389 392 0.867753 CAGGCTAAGACGCGCTACTG 60.868 60.000 5.73 7.83 0.00 2.74
390 393 2.231618 GGCTAAGACGCGCTACTGC 61.232 63.158 5.73 5.65 0.00 4.40
391 394 1.226717 GCTAAGACGCGCTACTGCT 60.227 57.895 5.73 0.00 36.97 4.24
392 395 0.029035 GCTAAGACGCGCTACTGCTA 59.971 55.000 5.73 0.00 36.97 3.49
393 396 1.744374 CTAAGACGCGCTACTGCTAC 58.256 55.000 5.73 0.00 36.97 3.58
394 397 1.063616 CTAAGACGCGCTACTGCTACA 59.936 52.381 5.73 0.00 36.97 2.74
395 398 0.242825 AAGACGCGCTACTGCTACAA 59.757 50.000 5.73 0.00 36.97 2.41
396 399 0.179161 AGACGCGCTACTGCTACAAG 60.179 55.000 5.73 0.00 36.97 3.16
397 400 0.456312 GACGCGCTACTGCTACAAGT 60.456 55.000 5.73 0.00 36.97 3.16
398 401 0.038526 ACGCGCTACTGCTACAAGTT 60.039 50.000 5.73 0.00 36.97 2.66
399 402 1.200716 ACGCGCTACTGCTACAAGTTA 59.799 47.619 5.73 0.00 36.97 2.24
400 403 1.846782 CGCGCTACTGCTACAAGTTAG 59.153 52.381 5.56 0.00 36.97 2.34
401 404 1.588861 GCGCTACTGCTACAAGTTAGC 59.411 52.381 0.00 0.00 40.76 3.09
402 405 2.735762 GCGCTACTGCTACAAGTTAGCT 60.736 50.000 0.00 0.00 40.95 3.32
403 406 2.854777 CGCTACTGCTACAAGTTAGCTG 59.145 50.000 0.00 8.21 42.67 4.24
405 408 4.438336 CGCTACTGCTACAAGTTAGCTGTA 60.438 45.833 17.09 17.09 46.16 2.74
411 414 2.080286 ACAAGTTAGCTGTAGCACCG 57.920 50.000 6.65 0.00 45.16 4.94
412 415 1.343465 ACAAGTTAGCTGTAGCACCGT 59.657 47.619 6.65 0.00 45.16 4.83
413 416 2.559668 ACAAGTTAGCTGTAGCACCGTA 59.440 45.455 6.65 0.00 45.16 4.02
414 417 3.179830 CAAGTTAGCTGTAGCACCGTAG 58.820 50.000 6.65 0.00 45.16 3.51
415 418 1.134560 AGTTAGCTGTAGCACCGTAGC 59.865 52.381 6.65 0.00 45.16 3.58
416 419 1.135199 GTTAGCTGTAGCACCGTAGCA 60.135 52.381 6.65 0.00 45.16 3.49
417 420 0.738975 TAGCTGTAGCACCGTAGCAG 59.261 55.000 6.65 0.00 45.16 4.24
418 421 1.215647 GCTGTAGCACCGTAGCAGT 59.784 57.895 0.00 0.00 41.59 4.40
419 422 0.454600 GCTGTAGCACCGTAGCAGTA 59.545 55.000 0.00 0.00 41.59 2.74
420 423 1.135199 GCTGTAGCACCGTAGCAGTAA 60.135 52.381 0.00 0.00 41.59 2.24
421 424 2.527100 CTGTAGCACCGTAGCAGTAAC 58.473 52.381 0.00 0.00 36.85 2.50
422 425 1.135603 TGTAGCACCGTAGCAGTAACG 60.136 52.381 0.00 0.00 40.01 3.18
423 426 1.135575 GTAGCACCGTAGCAGTAACGT 60.136 52.381 0.00 0.00 38.67 3.99
424 427 0.388134 AGCACCGTAGCAGTAACGTG 60.388 55.000 0.00 0.00 38.67 4.49
425 428 1.349259 GCACCGTAGCAGTAACGTGG 61.349 60.000 0.00 0.00 38.67 4.94
426 429 0.734942 CACCGTAGCAGTAACGTGGG 60.735 60.000 0.00 0.00 38.67 4.61
427 430 1.808390 CCGTAGCAGTAACGTGGGC 60.808 63.158 0.00 0.00 38.67 5.36
428 431 1.808390 CGTAGCAGTAACGTGGGCC 60.808 63.158 0.00 0.00 35.66 5.80
429 432 1.808390 GTAGCAGTAACGTGGGCCG 60.808 63.158 0.00 0.00 44.03 6.13
430 433 3.652539 TAGCAGTAACGTGGGCCGC 62.653 63.158 7.12 7.12 41.42 6.53
444 447 4.961511 CCGCCCGCGCTATTGCTA 62.962 66.667 5.56 0.00 38.24 3.49
445 448 3.406361 CGCCCGCGCTATTGCTAG 61.406 66.667 5.56 0.00 36.97 3.42
446 449 3.044305 GCCCGCGCTATTGCTAGG 61.044 66.667 5.56 0.00 36.97 3.02
447 450 3.044305 CCCGCGCTATTGCTAGGC 61.044 66.667 5.56 0.00 36.97 3.93
448 451 3.044305 CCGCGCTATTGCTAGGCC 61.044 66.667 5.56 0.00 36.97 5.19
449 452 2.029666 CGCGCTATTGCTAGGCCT 59.970 61.111 11.78 11.78 36.97 5.19
450 453 1.595382 CGCGCTATTGCTAGGCCTT 60.595 57.895 12.58 0.00 36.97 4.35
451 454 1.835483 CGCGCTATTGCTAGGCCTTG 61.835 60.000 12.58 11.17 36.97 3.61
452 455 1.510480 GCGCTATTGCTAGGCCTTGG 61.510 60.000 12.58 5.71 36.97 3.61
453 456 0.106708 CGCTATTGCTAGGCCTTGGA 59.893 55.000 12.58 7.71 36.97 3.53
454 457 1.598882 GCTATTGCTAGGCCTTGGAC 58.401 55.000 12.58 0.00 36.03 4.02
455 458 1.815795 GCTATTGCTAGGCCTTGGACC 60.816 57.143 12.58 0.00 36.03 4.46
456 459 0.843984 TATTGCTAGGCCTTGGACCC 59.156 55.000 12.58 0.00 0.00 4.46
457 460 2.270874 ATTGCTAGGCCTTGGACCCG 62.271 60.000 12.58 0.00 0.00 5.28
458 461 4.858680 GCTAGGCCTTGGACCCGC 62.859 72.222 12.58 0.00 0.00 6.13
459 462 4.530857 CTAGGCCTTGGACCCGCG 62.531 72.222 12.58 0.00 0.00 6.46
464 467 3.771160 CCTTGGACCCGCGCTACT 61.771 66.667 5.56 0.00 0.00 2.57
465 468 2.509336 CTTGGACCCGCGCTACTG 60.509 66.667 5.56 0.00 0.00 2.74
466 469 4.752879 TTGGACCCGCGCTACTGC 62.753 66.667 5.56 0.00 0.00 4.40
468 471 3.524606 GGACCCGCGCTACTGCTA 61.525 66.667 5.56 0.00 36.97 3.49
469 472 2.026301 GACCCGCGCTACTGCTAG 59.974 66.667 5.56 0.00 36.97 3.42
470 473 3.486252 GACCCGCGCTACTGCTAGG 62.486 68.421 5.56 0.00 36.97 3.02
471 474 4.951963 CCCGCGCTACTGCTAGGC 62.952 72.222 5.56 0.00 36.97 3.93
472 475 3.905678 CCGCGCTACTGCTAGGCT 61.906 66.667 5.56 0.00 36.97 4.58
473 476 2.105128 CGCGCTACTGCTAGGCTT 59.895 61.111 5.56 0.00 36.97 4.35
474 477 1.519455 CGCGCTACTGCTAGGCTTT 60.519 57.895 5.56 0.00 36.97 3.51
475 478 1.084370 CGCGCTACTGCTAGGCTTTT 61.084 55.000 5.56 0.00 36.97 2.27
476 479 0.653114 GCGCTACTGCTAGGCTTTTC 59.347 55.000 0.00 0.00 36.97 2.29
477 480 1.291132 CGCTACTGCTAGGCTTTTCC 58.709 55.000 0.00 0.00 36.97 3.13
478 481 1.669604 GCTACTGCTAGGCTTTTCCC 58.330 55.000 0.00 0.00 36.03 3.97
479 482 1.210722 GCTACTGCTAGGCTTTTCCCT 59.789 52.381 0.00 0.00 39.05 4.20
480 483 2.434702 GCTACTGCTAGGCTTTTCCCTA 59.565 50.000 0.00 0.00 36.41 3.53
516 519 9.793259 TGATCAACCTAATTTTCTCTTACAACT 57.207 29.630 0.00 0.00 0.00 3.16
523 526 8.999431 CCTAATTTTCTCTTACAACTTGTGCTA 58.001 33.333 4.57 0.00 0.00 3.49
532 535 7.584108 TCTTACAACTTGTGCTAAATGATGTG 58.416 34.615 4.57 0.00 0.00 3.21
536 539 6.710295 ACAACTTGTGCTAAATGATGTGTCTA 59.290 34.615 0.00 0.00 0.00 2.59
545 548 9.448438 TGCTAAATGATGTGTCTATGTTAAACT 57.552 29.630 0.00 0.00 0.00 2.66
556 559 9.601217 GTGTCTATGTTAAACTCTCAATATGGT 57.399 33.333 0.00 0.00 0.00 3.55
604 610 7.067496 AGAAGAAGAAACATAGTCTGAACCA 57.933 36.000 0.00 0.00 0.00 3.67
611 617 8.103948 AGAAACATAGTCTGAACCAAATCAAG 57.896 34.615 0.00 0.00 0.00 3.02
629 635 2.059756 AGGGAAATCTCAACCCCTCA 57.940 50.000 0.00 0.00 45.69 3.86
670 676 4.827087 AGCATGACGCAGGCCGAG 62.827 66.667 11.74 0.00 42.45 4.63
677 687 2.105128 CGCAGGCCGAGAACCTAG 59.895 66.667 0.00 0.00 40.02 3.02
692 702 4.753662 TAGGCACTCGGGGCGTCT 62.754 66.667 0.00 0.00 41.75 4.18
707 717 1.892468 CGTCTAGTGCACCGTACTTC 58.108 55.000 14.63 0.00 0.00 3.01
779 789 3.350219 GCTCCAAAGAGGTAATGTCCA 57.650 47.619 0.00 0.00 40.79 4.02
780 790 3.891049 GCTCCAAAGAGGTAATGTCCAT 58.109 45.455 0.00 0.00 40.79 3.41
781 791 3.629398 GCTCCAAAGAGGTAATGTCCATG 59.371 47.826 0.00 0.00 40.79 3.66
785 795 4.581824 CCAAAGAGGTAATGTCCATGATGG 59.418 45.833 4.74 4.74 39.43 3.51
818 828 0.899019 TTGGATCGATCACGTTGGGA 59.101 50.000 25.93 0.69 40.69 4.37
871 886 7.772332 AAGAAAATTAGTCGAGATACGCAAT 57.228 32.000 0.00 0.00 42.26 3.56
887 902 4.796231 ATGGCGCACGTCTCGTCC 62.796 66.667 10.83 9.88 38.32 4.79
896 911 3.730061 CGCACGTCTCGTCCTAATAGTTT 60.730 47.826 0.00 0.00 38.32 2.66
902 917 7.326789 CACGTCTCGTCCTAATAGTTTTTGTTA 59.673 37.037 0.00 0.00 38.32 2.41
1154 1170 2.122813 CAGGGATCCCGGTAGGCT 60.123 66.667 25.48 2.42 41.95 4.58
1430 1488 1.154073 GAGACCTTAAGACGCGCGT 60.154 57.895 38.52 38.52 0.00 6.01
1431 1489 1.403972 GAGACCTTAAGACGCGCGTG 61.404 60.000 42.90 26.64 0.00 5.34
1448 1512 0.515564 GTGCCACGTAACATGGACAC 59.484 55.000 0.00 0.67 39.87 3.67
1690 1800 3.023832 TGTGATCAAGCTCGACTCCATA 58.976 45.455 0.00 0.00 0.00 2.74
1697 1807 1.290324 CTCGACTCCATATGCCCCG 59.710 63.158 0.00 0.00 0.00 5.73
2222 2387 4.399618 AGCTTCTACGACACTGTGATATGT 59.600 41.667 15.86 9.12 0.00 2.29
2327 2492 4.619863 GCTTCTACAGATTTACCACGTCCA 60.620 45.833 0.00 0.00 0.00 4.02
2415 2580 9.668497 AAATTCAATAGTACTCCCTCTGTAAAC 57.332 33.333 0.00 0.00 0.00 2.01
2416 2581 8.611051 ATTCAATAGTACTCCCTCTGTAAACT 57.389 34.615 0.00 0.00 0.00 2.66
2417 2582 9.710818 ATTCAATAGTACTCCCTCTGTAAACTA 57.289 33.333 0.00 0.00 0.00 2.24
2418 2583 9.537852 TTCAATAGTACTCCCTCTGTAAACTAA 57.462 33.333 0.00 0.00 0.00 2.24
2419 2584 9.710818 TCAATAGTACTCCCTCTGTAAACTAAT 57.289 33.333 0.00 0.00 0.00 1.73
2420 2585 9.751542 CAATAGTACTCCCTCTGTAAACTAATG 57.248 37.037 0.00 0.00 0.00 1.90
2421 2586 9.490083 AATAGTACTCCCTCTGTAAACTAATGT 57.510 33.333 0.00 0.00 0.00 2.71
2423 2588 8.890410 AGTACTCCCTCTGTAAACTAATGTAA 57.110 34.615 0.00 0.00 0.00 2.41
2424 2589 8.968969 AGTACTCCCTCTGTAAACTAATGTAAG 58.031 37.037 0.00 0.00 0.00 2.34
2425 2590 8.964772 GTACTCCCTCTGTAAACTAATGTAAGA 58.035 37.037 0.00 0.00 0.00 2.10
2426 2591 8.068892 ACTCCCTCTGTAAACTAATGTAAGAG 57.931 38.462 0.00 0.00 0.00 2.85
2427 2592 7.674772 ACTCCCTCTGTAAACTAATGTAAGAGT 59.325 37.037 0.00 0.00 0.00 3.24
2428 2593 7.837863 TCCCTCTGTAAACTAATGTAAGAGTG 58.162 38.462 0.00 0.00 0.00 3.51
2429 2594 7.453752 TCCCTCTGTAAACTAATGTAAGAGTGT 59.546 37.037 0.00 0.00 0.00 3.55
2430 2595 8.095169 CCCTCTGTAAACTAATGTAAGAGTGTT 58.905 37.037 0.00 0.00 0.00 3.32
2431 2596 9.490379 CCTCTGTAAACTAATGTAAGAGTGTTT 57.510 33.333 0.00 0.00 0.00 2.83
2479 2644 8.535690 AATGCTCTTATATTAGTTTACGGAGC 57.464 34.615 0.00 0.00 42.41 4.70
2480 2645 6.147581 TGCTCTTATATTAGTTTACGGAGCG 58.852 40.000 0.00 0.00 44.21 5.03
2481 2646 6.016860 TGCTCTTATATTAGTTTACGGAGCGA 60.017 38.462 0.00 0.00 44.21 4.93
2482 2647 6.523893 GCTCTTATATTAGTTTACGGAGCGAG 59.476 42.308 0.00 0.00 35.22 5.03
2483 2648 7.502120 TCTTATATTAGTTTACGGAGCGAGT 57.498 36.000 0.00 0.00 0.00 4.18
2484 2649 8.607441 TCTTATATTAGTTTACGGAGCGAGTA 57.393 34.615 0.00 0.00 0.00 2.59
2485 2650 8.499162 TCTTATATTAGTTTACGGAGCGAGTAC 58.501 37.037 0.00 0.00 0.00 2.73
2486 2651 6.874288 ATATTAGTTTACGGAGCGAGTACT 57.126 37.500 0.00 0.00 0.00 2.73
2487 2652 5.573337 ATTAGTTTACGGAGCGAGTACTT 57.427 39.130 0.00 0.00 0.00 2.24
2488 2653 3.484334 AGTTTACGGAGCGAGTACTTC 57.516 47.619 0.00 0.00 0.00 3.01
2489 2654 2.163211 AGTTTACGGAGCGAGTACTTCC 59.837 50.000 0.00 0.00 0.00 3.46
2490 2655 2.119801 TTACGGAGCGAGTACTTCCT 57.880 50.000 9.82 3.65 0.00 3.36
2553 2721 1.273267 ACACTGATGTAGAGGCTGGGA 60.273 52.381 0.00 0.00 37.26 4.37
2554 2722 1.137872 CACTGATGTAGAGGCTGGGAC 59.862 57.143 0.00 0.00 0.00 4.46
2555 2723 1.007721 ACTGATGTAGAGGCTGGGACT 59.992 52.381 0.00 0.00 0.00 3.85
2737 2905 5.063180 TGACATGGAAGATGAAATGTTGC 57.937 39.130 0.00 0.00 38.43 4.17
2752 2920 0.453950 GTTGCATGTTGAGCGCAGAG 60.454 55.000 11.47 0.00 36.91 3.35
2763 2931 2.287915 TGAGCGCAGAGAAAGTTTCAAC 59.712 45.455 17.65 10.77 0.00 3.18
2779 2947 4.747540 TTCAACACAAACCGATGATGAG 57.252 40.909 0.00 0.00 0.00 2.90
2807 2975 4.834357 AAATTCAAATGTTTGCTTGGGC 57.166 36.364 0.66 0.00 38.05 5.36
3004 3264 6.876155 AGATTACTAGGAGAGCATGCATATG 58.124 40.000 21.98 0.00 37.36 1.78
3117 3385 2.670592 GGTGCCCCGTTTAACGCT 60.671 61.111 12.41 0.00 40.91 5.07
3125 3393 0.110823 CCGTTTAACGCTCACTGCAC 60.111 55.000 12.41 0.00 40.91 4.57
3143 3411 3.987868 TGCACTCGTAATTTCTGTCTCAC 59.012 43.478 0.00 0.00 0.00 3.51
3146 3414 5.862323 GCACTCGTAATTTCTGTCTCACTTA 59.138 40.000 0.00 0.00 0.00 2.24
3147 3415 6.183359 GCACTCGTAATTTCTGTCTCACTTAC 60.183 42.308 0.00 0.00 0.00 2.34
3151 3449 7.431249 TCGTAATTTCTGTCTCACTTACTTGT 58.569 34.615 0.00 0.00 0.00 3.16
3204 3506 1.539827 GTGTTTGCTATCGCCAGGTTT 59.460 47.619 0.00 0.00 34.43 3.27
3205 3507 2.030274 GTGTTTGCTATCGCCAGGTTTT 60.030 45.455 0.00 0.00 34.43 2.43
3251 3554 1.226603 GGTCGACGGTTCGGATGAG 60.227 63.158 9.92 0.00 45.90 2.90
3253 3556 0.109412 GTCGACGGTTCGGATGAGTT 60.109 55.000 0.00 0.00 45.90 3.01
3254 3557 0.109458 TCGACGGTTCGGATGAGTTG 60.109 55.000 0.00 0.00 45.90 3.16
3265 3568 2.381911 GGATGAGTTGATGGCATTGGT 58.618 47.619 0.00 0.00 0.00 3.67
3270 3573 0.249955 GTTGATGGCATTGGTTGGGG 59.750 55.000 0.00 0.00 0.00 4.96
3274 3577 0.473501 ATGGCATTGGTTGGGGTGTT 60.474 50.000 0.00 0.00 0.00 3.32
3276 3579 0.034756 GGCATTGGTTGGGGTGTTTC 59.965 55.000 0.00 0.00 0.00 2.78
3277 3580 0.034756 GCATTGGTTGGGGTGTTTCC 59.965 55.000 0.00 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.561213 TCGAATACTTGCAACTACATCGTG 59.439 41.667 15.87 0.89 0.00 4.35
43 46 8.662781 AAATAGCGATACAAGTTATGACATGT 57.337 30.769 0.00 0.00 40.48 3.21
44 47 7.946768 CGAAATAGCGATACAAGTTATGACATG 59.053 37.037 0.00 0.00 0.00 3.21
45 48 7.865889 TCGAAATAGCGATACAAGTTATGACAT 59.134 33.333 0.00 0.00 35.01 3.06
46 49 7.197703 TCGAAATAGCGATACAAGTTATGACA 58.802 34.615 0.00 0.00 35.01 3.58
47 50 7.590322 TCTCGAAATAGCGATACAAGTTATGAC 59.410 37.037 0.00 0.00 39.85 3.06
48 51 7.645402 TCTCGAAATAGCGATACAAGTTATGA 58.355 34.615 0.00 0.00 39.85 2.15
49 52 7.853377 TCTCGAAATAGCGATACAAGTTATG 57.147 36.000 0.00 0.00 39.85 1.90
50 53 7.542477 CCATCTCGAAATAGCGATACAAGTTAT 59.458 37.037 0.00 0.00 39.85 1.89
51 54 6.861572 CCATCTCGAAATAGCGATACAAGTTA 59.138 38.462 0.00 0.00 39.85 2.24
52 55 5.692204 CCATCTCGAAATAGCGATACAAGTT 59.308 40.000 0.00 0.00 39.85 2.66
53 56 5.221263 ACCATCTCGAAATAGCGATACAAGT 60.221 40.000 0.00 0.00 39.85 3.16
54 57 5.117745 CACCATCTCGAAATAGCGATACAAG 59.882 44.000 0.00 0.00 39.85 3.16
55 58 4.982295 CACCATCTCGAAATAGCGATACAA 59.018 41.667 0.00 0.00 39.85 2.41
56 59 4.277423 TCACCATCTCGAAATAGCGATACA 59.723 41.667 0.00 0.00 39.85 2.29
57 60 4.617645 GTCACCATCTCGAAATAGCGATAC 59.382 45.833 0.00 0.00 39.85 2.24
58 61 4.612939 CGTCACCATCTCGAAATAGCGATA 60.613 45.833 0.00 0.00 39.85 2.92
59 62 3.643763 GTCACCATCTCGAAATAGCGAT 58.356 45.455 0.00 0.00 39.85 4.58
60 63 2.540973 CGTCACCATCTCGAAATAGCGA 60.541 50.000 0.00 0.00 38.74 4.93
61 64 1.781429 CGTCACCATCTCGAAATAGCG 59.219 52.381 0.00 0.00 0.00 4.26
62 65 3.046390 CTCGTCACCATCTCGAAATAGC 58.954 50.000 0.00 0.00 33.32 2.97
63 66 4.273724 TCTCTCGTCACCATCTCGAAATAG 59.726 45.833 0.00 0.00 33.32 1.73
64 67 4.035324 GTCTCTCGTCACCATCTCGAAATA 59.965 45.833 0.00 0.00 33.32 1.40
65 68 3.017442 TCTCTCGTCACCATCTCGAAAT 58.983 45.455 0.00 0.00 33.32 2.17
66 69 2.161808 GTCTCTCGTCACCATCTCGAAA 59.838 50.000 0.00 0.00 33.32 3.46
67 70 1.738350 GTCTCTCGTCACCATCTCGAA 59.262 52.381 0.00 0.00 33.32 3.71
68 71 1.338769 TGTCTCTCGTCACCATCTCGA 60.339 52.381 0.00 0.00 0.00 4.04
69 72 1.087501 TGTCTCTCGTCACCATCTCG 58.912 55.000 0.00 0.00 0.00 4.04
70 73 2.685388 TGATGTCTCTCGTCACCATCTC 59.315 50.000 0.00 0.00 37.18 2.75
71 74 2.728007 TGATGTCTCTCGTCACCATCT 58.272 47.619 0.00 0.00 37.18 2.90
72 75 3.724508 ATGATGTCTCTCGTCACCATC 57.275 47.619 0.00 0.00 43.67 3.51
73 76 4.478206 AAATGATGTCTCTCGTCACCAT 57.522 40.909 0.00 0.00 43.67 3.55
74 77 3.961480 AAATGATGTCTCTCGTCACCA 57.039 42.857 0.00 0.00 43.67 4.17
75 78 3.997021 ACAAAATGATGTCTCTCGTCACC 59.003 43.478 0.00 0.00 43.67 4.02
76 79 4.449068 ACACAAAATGATGTCTCTCGTCAC 59.551 41.667 0.00 0.00 43.67 3.67
77 80 4.631131 ACACAAAATGATGTCTCTCGTCA 58.369 39.130 0.00 0.00 44.76 4.35
78 81 5.377358 CAACACAAAATGATGTCTCTCGTC 58.623 41.667 0.00 0.00 0.00 4.20
79 82 4.214119 CCAACACAAAATGATGTCTCTCGT 59.786 41.667 0.00 0.00 29.15 4.18
80 83 4.452114 TCCAACACAAAATGATGTCTCTCG 59.548 41.667 0.00 0.00 29.15 4.04
81 84 5.947228 TCCAACACAAAATGATGTCTCTC 57.053 39.130 0.00 0.00 29.15 3.20
82 85 6.005823 TCATCCAACACAAAATGATGTCTCT 58.994 36.000 0.00 0.00 35.47 3.10
83 86 6.258230 TCATCCAACACAAAATGATGTCTC 57.742 37.500 0.00 0.00 35.47 3.36
84 87 6.627243 CATCATCCAACACAAAATGATGTCT 58.373 36.000 13.44 0.00 45.28 3.41
85 88 6.880822 CATCATCCAACACAAAATGATGTC 57.119 37.500 13.44 0.00 45.28 3.06
88 91 9.758651 CATAATCATCATCCAACACAAAATGAT 57.241 29.630 0.00 0.00 38.95 2.45
89 92 8.968969 TCATAATCATCATCCAACACAAAATGA 58.031 29.630 0.00 0.00 33.04 2.57
90 93 9.758651 ATCATAATCATCATCCAACACAAAATG 57.241 29.630 0.00 0.00 0.00 2.32
91 94 9.758651 CATCATAATCATCATCCAACACAAAAT 57.241 29.630 0.00 0.00 0.00 1.82
92 95 8.968969 TCATCATAATCATCATCCAACACAAAA 58.031 29.630 0.00 0.00 0.00 2.44
93 96 8.522542 TCATCATAATCATCATCCAACACAAA 57.477 30.769 0.00 0.00 0.00 2.83
94 97 8.573035 CATCATCATAATCATCATCCAACACAA 58.427 33.333 0.00 0.00 0.00 3.33
95 98 7.940137 TCATCATCATAATCATCATCCAACACA 59.060 33.333 0.00 0.00 0.00 3.72
96 99 8.235226 GTCATCATCATAATCATCATCCAACAC 58.765 37.037 0.00 0.00 0.00 3.32
97 100 7.940137 TGTCATCATCATAATCATCATCCAACA 59.060 33.333 0.00 0.00 0.00 3.33
98 101 8.331730 TGTCATCATCATAATCATCATCCAAC 57.668 34.615 0.00 0.00 0.00 3.77
112 115 9.794719 AGTCTCATCAAATTATGTCATCATCAT 57.205 29.630 0.00 0.00 35.70 2.45
164 167 9.914131 GTCTCTAGCATATCATACACATACAAA 57.086 33.333 0.00 0.00 0.00 2.83
165 168 9.301897 AGTCTCTAGCATATCATACACATACAA 57.698 33.333 0.00 0.00 0.00 2.41
166 169 8.870075 AGTCTCTAGCATATCATACACATACA 57.130 34.615 0.00 0.00 0.00 2.29
170 173 8.246871 GCAATAGTCTCTAGCATATCATACACA 58.753 37.037 0.00 0.00 0.00 3.72
171 174 8.246871 TGCAATAGTCTCTAGCATATCATACAC 58.753 37.037 0.00 0.00 0.00 2.90
172 175 8.353423 TGCAATAGTCTCTAGCATATCATACA 57.647 34.615 0.00 0.00 0.00 2.29
178 181 9.442047 GGTTTTATGCAATAGTCTCTAGCATAT 57.558 33.333 11.52 0.00 44.66 1.78
179 182 8.651389 AGGTTTTATGCAATAGTCTCTAGCATA 58.349 33.333 0.00 0.00 43.45 3.14
180 183 7.443575 CAGGTTTTATGCAATAGTCTCTAGCAT 59.556 37.037 0.00 0.00 46.53 3.79
181 184 6.763135 CAGGTTTTATGCAATAGTCTCTAGCA 59.237 38.462 0.00 0.00 39.79 3.49
182 185 6.763610 ACAGGTTTTATGCAATAGTCTCTAGC 59.236 38.462 0.00 0.00 0.00 3.42
183 186 9.250624 GTACAGGTTTTATGCAATAGTCTCTAG 57.749 37.037 0.00 0.00 0.00 2.43
184 187 8.755028 TGTACAGGTTTTATGCAATAGTCTCTA 58.245 33.333 0.00 0.00 0.00 2.43
185 188 7.620880 TGTACAGGTTTTATGCAATAGTCTCT 58.379 34.615 0.00 0.00 0.00 3.10
186 189 7.843490 TGTACAGGTTTTATGCAATAGTCTC 57.157 36.000 0.00 0.00 0.00 3.36
187 190 8.630054 TTTGTACAGGTTTTATGCAATAGTCT 57.370 30.769 0.00 0.00 0.00 3.24
192 195 9.988815 TTTGTATTTGTACAGGTTTTATGCAAT 57.011 25.926 0.00 0.00 0.00 3.56
193 196 9.469807 CTTTGTATTTGTACAGGTTTTATGCAA 57.530 29.630 0.00 0.00 0.00 4.08
194 197 8.851145 TCTTTGTATTTGTACAGGTTTTATGCA 58.149 29.630 0.00 0.00 0.00 3.96
195 198 9.685828 TTCTTTGTATTTGTACAGGTTTTATGC 57.314 29.630 0.00 0.00 0.00 3.14
202 205 9.855021 GCATATTTTCTTTGTATTTGTACAGGT 57.145 29.630 0.00 0.00 0.00 4.00
203 206 9.853555 TGCATATTTTCTTTGTATTTGTACAGG 57.146 29.630 0.00 0.00 0.00 4.00
239 242 9.503427 GCGCTATTGTTATTAGTTTCTGATTTT 57.497 29.630 0.00 0.00 0.00 1.82
240 243 8.893727 AGCGCTATTGTTATTAGTTTCTGATTT 58.106 29.630 8.99 0.00 0.00 2.17
241 244 8.338259 CAGCGCTATTGTTATTAGTTTCTGATT 58.662 33.333 10.99 0.00 0.00 2.57
242 245 7.041780 CCAGCGCTATTGTTATTAGTTTCTGAT 60.042 37.037 10.99 0.00 0.00 2.90
243 246 6.257849 CCAGCGCTATTGTTATTAGTTTCTGA 59.742 38.462 10.99 0.00 0.00 3.27
244 247 6.422223 CCAGCGCTATTGTTATTAGTTTCTG 58.578 40.000 10.99 0.00 0.00 3.02
245 248 5.527582 CCCAGCGCTATTGTTATTAGTTTCT 59.472 40.000 10.99 0.00 0.00 2.52
246 249 5.296035 ACCCAGCGCTATTGTTATTAGTTTC 59.704 40.000 10.99 0.00 0.00 2.78
247 250 5.190677 ACCCAGCGCTATTGTTATTAGTTT 58.809 37.500 10.99 0.00 0.00 2.66
248 251 4.777463 ACCCAGCGCTATTGTTATTAGTT 58.223 39.130 10.99 0.00 0.00 2.24
249 252 4.417426 ACCCAGCGCTATTGTTATTAGT 57.583 40.909 10.99 0.00 0.00 2.24
250 253 5.932303 ACATACCCAGCGCTATTGTTATTAG 59.068 40.000 10.99 0.00 0.00 1.73
251 254 5.860611 ACATACCCAGCGCTATTGTTATTA 58.139 37.500 10.99 0.00 0.00 0.98
252 255 4.714632 ACATACCCAGCGCTATTGTTATT 58.285 39.130 10.99 0.00 0.00 1.40
253 256 4.351874 ACATACCCAGCGCTATTGTTAT 57.648 40.909 10.99 0.00 0.00 1.89
254 257 3.830744 ACATACCCAGCGCTATTGTTA 57.169 42.857 10.99 0.00 0.00 2.41
255 258 2.710096 ACATACCCAGCGCTATTGTT 57.290 45.000 10.99 0.00 0.00 2.83
256 259 2.170607 AGAACATACCCAGCGCTATTGT 59.829 45.455 10.99 10.39 0.00 2.71
257 260 2.838736 AGAACATACCCAGCGCTATTG 58.161 47.619 10.99 3.67 0.00 1.90
258 261 3.560636 AAGAACATACCCAGCGCTATT 57.439 42.857 10.99 0.00 0.00 1.73
259 262 3.555168 GCTAAGAACATACCCAGCGCTAT 60.555 47.826 10.99 0.46 0.00 2.97
260 263 2.223971 GCTAAGAACATACCCAGCGCTA 60.224 50.000 10.99 0.00 0.00 4.26
261 264 1.473434 GCTAAGAACATACCCAGCGCT 60.473 52.381 2.64 2.64 0.00 5.92
262 265 0.938008 GCTAAGAACATACCCAGCGC 59.062 55.000 0.00 0.00 0.00 5.92
263 266 2.205074 CTGCTAAGAACATACCCAGCG 58.795 52.381 0.00 0.00 0.00 5.18
264 267 3.268023 ACTGCTAAGAACATACCCAGC 57.732 47.619 0.00 0.00 0.00 4.85
265 268 4.372656 GCTACTGCTAAGAACATACCCAG 58.627 47.826 0.00 0.00 36.03 4.45
266 269 4.402056 GCTACTGCTAAGAACATACCCA 57.598 45.455 0.00 0.00 36.03 4.51
278 281 8.827677 GCTTTATTTTAAAGCTAGCTACTGCTA 58.172 33.333 19.70 2.71 46.54 3.49
279 282 7.698628 GCTTTATTTTAAAGCTAGCTACTGCT 58.301 34.615 19.70 0.00 46.64 4.24
280 283 7.900299 GCTTTATTTTAAAGCTAGCTACTGC 57.100 36.000 19.70 7.20 46.64 4.40
290 293 5.606335 GCTGTAGCGCTTTATTTTAAAGC 57.394 39.130 18.68 17.83 46.68 3.51
294 297 7.439955 TGCTAATAGCTGTAGCGCTTTATTTTA 59.560 33.333 18.68 2.24 45.76 1.52
295 298 6.260050 TGCTAATAGCTGTAGCGCTTTATTTT 59.740 34.615 18.68 4.09 45.76 1.82
296 299 5.758296 TGCTAATAGCTGTAGCGCTTTATTT 59.242 36.000 18.68 1.44 45.76 1.40
297 300 5.297547 TGCTAATAGCTGTAGCGCTTTATT 58.702 37.500 18.68 14.19 45.76 1.40
298 301 4.883083 TGCTAATAGCTGTAGCGCTTTAT 58.117 39.130 18.68 3.77 45.76 1.40
299 302 4.299155 CTGCTAATAGCTGTAGCGCTTTA 58.701 43.478 18.68 5.13 45.76 1.85
300 303 3.126831 CTGCTAATAGCTGTAGCGCTTT 58.873 45.455 18.68 3.96 45.76 3.51
301 304 2.748605 CTGCTAATAGCTGTAGCGCTT 58.251 47.619 18.68 0.00 45.76 4.68
302 305 2.430546 CTGCTAATAGCTGTAGCGCT 57.569 50.000 17.26 17.26 45.76 5.92
309 312 2.802787 ACCGCTACTGCTAATAGCTG 57.197 50.000 16.04 16.04 42.97 4.24
310 313 3.821421 AAACCGCTACTGCTAATAGCT 57.179 42.857 13.88 0.00 42.97 3.32
311 314 4.618965 ACTAAACCGCTACTGCTAATAGC 58.381 43.478 5.12 5.12 42.82 2.97
312 315 7.167136 GTGTTACTAAACCGCTACTGCTAATAG 59.833 40.741 0.00 0.00 34.49 1.73
313 316 6.974622 GTGTTACTAAACCGCTACTGCTAATA 59.025 38.462 0.00 0.00 34.49 0.98
314 317 5.809051 GTGTTACTAAACCGCTACTGCTAAT 59.191 40.000 0.00 0.00 34.49 1.73
315 318 5.163513 GTGTTACTAAACCGCTACTGCTAA 58.836 41.667 0.00 0.00 34.49 3.09
316 319 4.672542 CGTGTTACTAAACCGCTACTGCTA 60.673 45.833 0.00 0.00 34.49 3.49
317 320 3.582780 GTGTTACTAAACCGCTACTGCT 58.417 45.455 0.00 0.00 34.49 4.24
318 321 2.343544 CGTGTTACTAAACCGCTACTGC 59.656 50.000 0.00 0.00 34.49 4.40
319 322 3.825308 TCGTGTTACTAAACCGCTACTG 58.175 45.455 0.00 0.00 34.49 2.74
320 323 3.671702 GCTCGTGTTACTAAACCGCTACT 60.672 47.826 0.00 0.00 34.49 2.57
321 324 2.595977 GCTCGTGTTACTAAACCGCTAC 59.404 50.000 0.00 0.00 34.49 3.58
322 325 2.489329 AGCTCGTGTTACTAAACCGCTA 59.511 45.455 0.00 0.00 34.49 4.26
323 326 1.271656 AGCTCGTGTTACTAAACCGCT 59.728 47.619 0.00 0.00 34.49 5.52
324 327 1.706443 AGCTCGTGTTACTAAACCGC 58.294 50.000 0.00 0.00 34.49 5.68
325 328 3.850273 CAGTAGCTCGTGTTACTAAACCG 59.150 47.826 12.68 0.00 37.98 4.44
326 329 3.611549 GCAGTAGCTCGTGTTACTAAACC 59.388 47.826 12.68 1.01 37.98 3.27
327 330 4.819700 GCAGTAGCTCGTGTTACTAAAC 57.180 45.455 12.68 3.91 37.98 2.01
341 344 4.800993 CCGTTATCTATATGCAGCAGTAGC 59.199 45.833 0.00 0.00 42.56 3.58
342 345 5.955488 ACCGTTATCTATATGCAGCAGTAG 58.045 41.667 0.00 6.27 0.00 2.57
343 346 5.977489 ACCGTTATCTATATGCAGCAGTA 57.023 39.130 0.00 0.00 0.00 2.74
344 347 4.873746 ACCGTTATCTATATGCAGCAGT 57.126 40.909 0.00 0.00 0.00 4.40
345 348 4.800993 GCTACCGTTATCTATATGCAGCAG 59.199 45.833 0.00 0.00 0.00 4.24
346 349 4.674362 CGCTACCGTTATCTATATGCAGCA 60.674 45.833 0.00 0.00 0.00 4.41
347 350 3.791887 CGCTACCGTTATCTATATGCAGC 59.208 47.826 0.00 0.00 0.00 5.25
348 351 3.791887 GCGCTACCGTTATCTATATGCAG 59.208 47.826 0.00 0.00 36.67 4.41
349 352 3.191791 TGCGCTACCGTTATCTATATGCA 59.808 43.478 9.73 0.00 36.67 3.96
350 353 3.766151 TGCGCTACCGTTATCTATATGC 58.234 45.455 9.73 0.00 36.67 3.14
351 354 4.352039 CCTGCGCTACCGTTATCTATATG 58.648 47.826 9.73 0.00 36.67 1.78
352 355 3.181489 GCCTGCGCTACCGTTATCTATAT 60.181 47.826 9.73 0.00 36.67 0.86
353 356 2.163010 GCCTGCGCTACCGTTATCTATA 59.837 50.000 9.73 0.00 36.67 1.31
354 357 1.067776 GCCTGCGCTACCGTTATCTAT 60.068 52.381 9.73 0.00 36.67 1.98
355 358 0.313043 GCCTGCGCTACCGTTATCTA 59.687 55.000 9.73 0.00 36.67 1.98
356 359 1.067582 GCCTGCGCTACCGTTATCT 59.932 57.895 9.73 0.00 36.67 1.98
357 360 0.313043 TAGCCTGCGCTACCGTTATC 59.687 55.000 9.73 0.00 46.08 1.75
358 361 2.422303 TAGCCTGCGCTACCGTTAT 58.578 52.632 9.73 0.00 46.08 1.89
359 362 3.923013 TAGCCTGCGCTACCGTTA 58.077 55.556 9.73 0.00 46.08 3.18
365 368 2.104331 GCGTCTTAGCCTGCGCTA 59.896 61.111 9.73 0.00 46.08 4.26
369 372 2.104331 TAGCGCGTCTTAGCCTGC 59.896 61.111 8.43 0.00 0.00 4.85
370 373 0.867753 CAGTAGCGCGTCTTAGCCTG 60.868 60.000 8.43 6.43 0.00 4.85
371 374 1.433879 CAGTAGCGCGTCTTAGCCT 59.566 57.895 8.43 0.00 0.00 4.58
372 375 2.231618 GCAGTAGCGCGTCTTAGCC 61.232 63.158 8.43 0.00 0.00 3.93
373 376 3.300588 GCAGTAGCGCGTCTTAGC 58.699 61.111 8.43 3.35 0.00 3.09
382 385 6.233073 CTACAGCTAACTTGTAGCAGTAGCG 61.233 48.000 18.79 4.70 46.14 4.26
383 386 3.851098 ACAGCTAACTTGTAGCAGTAGC 58.149 45.455 8.00 0.00 42.68 3.58
390 393 3.179830 CGGTGCTACAGCTAACTTGTAG 58.820 50.000 2.44 7.80 46.82 2.74
391 394 2.559668 ACGGTGCTACAGCTAACTTGTA 59.440 45.455 2.44 0.00 42.66 2.41
392 395 1.343465 ACGGTGCTACAGCTAACTTGT 59.657 47.619 2.44 0.00 42.66 3.16
393 396 2.080286 ACGGTGCTACAGCTAACTTG 57.920 50.000 2.44 0.00 42.66 3.16
394 397 2.416972 GCTACGGTGCTACAGCTAACTT 60.417 50.000 2.44 0.00 42.66 2.66
395 398 1.134560 GCTACGGTGCTACAGCTAACT 59.865 52.381 2.44 0.00 42.66 2.24
396 399 1.135199 TGCTACGGTGCTACAGCTAAC 60.135 52.381 2.44 0.00 42.66 2.34
397 400 1.134367 CTGCTACGGTGCTACAGCTAA 59.866 52.381 2.44 0.00 42.66 3.09
398 401 0.738975 CTGCTACGGTGCTACAGCTA 59.261 55.000 2.44 0.00 42.66 3.32
399 402 1.251527 ACTGCTACGGTGCTACAGCT 61.252 55.000 2.44 0.00 42.66 4.24
400 403 0.454600 TACTGCTACGGTGCTACAGC 59.545 55.000 0.00 0.00 42.50 4.40
401 404 2.527100 GTTACTGCTACGGTGCTACAG 58.473 52.381 3.74 0.00 0.00 2.74
402 405 1.135603 CGTTACTGCTACGGTGCTACA 60.136 52.381 3.74 0.00 35.47 2.74
403 406 1.135575 ACGTTACTGCTACGGTGCTAC 60.136 52.381 0.00 0.00 42.99 3.58
404 407 1.135603 CACGTTACTGCTACGGTGCTA 60.136 52.381 0.00 0.00 42.99 3.49
405 408 0.388134 CACGTTACTGCTACGGTGCT 60.388 55.000 0.00 0.00 42.99 4.40
406 409 1.349259 CCACGTTACTGCTACGGTGC 61.349 60.000 0.00 0.00 42.99 5.01
407 410 0.734942 CCCACGTTACTGCTACGGTG 60.735 60.000 0.00 0.00 42.99 4.94
408 411 1.588082 CCCACGTTACTGCTACGGT 59.412 57.895 0.00 0.00 42.99 4.83
409 412 1.808390 GCCCACGTTACTGCTACGG 60.808 63.158 0.00 0.00 42.99 4.02
410 413 1.808390 GGCCCACGTTACTGCTACG 60.808 63.158 0.00 0.00 44.20 3.51
411 414 1.808390 CGGCCCACGTTACTGCTAC 60.808 63.158 0.00 0.00 37.93 3.58
412 415 2.574929 CGGCCCACGTTACTGCTA 59.425 61.111 0.00 0.00 37.93 3.49
435 438 1.598882 GTCCAAGGCCTAGCAATAGC 58.401 55.000 5.16 0.00 42.56 2.97
436 439 1.202818 GGGTCCAAGGCCTAGCAATAG 60.203 57.143 5.16 0.00 0.00 1.73
437 440 0.843984 GGGTCCAAGGCCTAGCAATA 59.156 55.000 5.16 0.00 0.00 1.90
438 441 1.615262 GGGTCCAAGGCCTAGCAAT 59.385 57.895 5.16 0.00 0.00 3.56
439 442 2.966732 CGGGTCCAAGGCCTAGCAA 61.967 63.158 5.16 0.00 0.00 3.91
440 443 3.399181 CGGGTCCAAGGCCTAGCA 61.399 66.667 5.16 0.00 0.00 3.49
441 444 4.858680 GCGGGTCCAAGGCCTAGC 62.859 72.222 5.16 0.00 0.00 3.42
442 445 4.530857 CGCGGGTCCAAGGCCTAG 62.531 72.222 5.16 0.00 0.00 3.02
447 450 3.771160 AGTAGCGCGGGTCCAAGG 61.771 66.667 8.83 0.00 0.00 3.61
448 451 2.509336 CAGTAGCGCGGGTCCAAG 60.509 66.667 8.83 0.00 0.00 3.61
449 452 4.752879 GCAGTAGCGCGGGTCCAA 62.753 66.667 8.83 0.00 0.00 3.53
458 461 2.074826 GGGAAAAGCCTAGCAGTAGCG 61.075 57.143 0.00 0.00 40.82 4.26
459 462 1.210722 AGGGAAAAGCCTAGCAGTAGC 59.789 52.381 0.00 0.00 37.73 3.58
460 463 3.707102 ACTAGGGAAAAGCCTAGCAGTAG 59.293 47.826 0.00 0.00 39.48 2.57
461 464 3.721021 ACTAGGGAAAAGCCTAGCAGTA 58.279 45.455 0.00 0.00 39.48 2.74
462 465 2.552367 ACTAGGGAAAAGCCTAGCAGT 58.448 47.619 0.00 0.00 39.48 4.40
463 466 3.707102 ACTACTAGGGAAAAGCCTAGCAG 59.293 47.826 0.00 0.00 39.48 4.24
464 467 3.721021 ACTACTAGGGAAAAGCCTAGCA 58.279 45.455 0.00 0.00 39.48 3.49
465 468 5.539193 TCATACTACTAGGGAAAAGCCTAGC 59.461 44.000 0.00 0.00 39.48 3.42
466 469 7.451877 TCATCATACTACTAGGGAAAAGCCTAG 59.548 40.741 0.00 0.00 41.06 3.02
467 470 7.302948 TCATCATACTACTAGGGAAAAGCCTA 58.697 38.462 0.00 0.00 36.66 3.93
468 471 6.143915 TCATCATACTACTAGGGAAAAGCCT 58.856 40.000 0.00 0.00 36.66 4.58
469 472 6.420913 TCATCATACTACTAGGGAAAAGCC 57.579 41.667 0.00 0.00 0.00 4.35
470 473 7.671302 TGATCATCATACTACTAGGGAAAAGC 58.329 38.462 0.00 0.00 0.00 3.51
471 474 9.482627 GTTGATCATCATACTACTAGGGAAAAG 57.517 37.037 0.00 0.00 0.00 2.27
472 475 8.429641 GGTTGATCATCATACTACTAGGGAAAA 58.570 37.037 0.00 0.00 0.00 2.29
473 476 7.789831 AGGTTGATCATCATACTACTAGGGAAA 59.210 37.037 0.00 0.00 0.00 3.13
474 477 7.306013 AGGTTGATCATCATACTACTAGGGAA 58.694 38.462 0.00 0.00 0.00 3.97
475 478 6.864421 AGGTTGATCATCATACTACTAGGGA 58.136 40.000 0.00 0.00 0.00 4.20
476 479 8.651589 TTAGGTTGATCATCATACTACTAGGG 57.348 38.462 0.00 0.00 0.00 3.53
509 512 7.228507 AGACACATCATTTAGCACAAGTTGTAA 59.771 33.333 8.49 0.00 0.00 2.41
514 517 6.881065 ACATAGACACATCATTTAGCACAAGT 59.119 34.615 0.00 0.00 0.00 3.16
516 519 7.686438 AACATAGACACATCATTTAGCACAA 57.314 32.000 0.00 0.00 0.00 3.33
523 526 9.725019 TGAGAGTTTAACATAGACACATCATTT 57.275 29.630 0.00 0.00 0.00 2.32
532 535 8.552034 GCACCATATTGAGAGTTTAACATAGAC 58.448 37.037 0.00 0.00 0.00 2.59
536 539 6.186957 TGGCACCATATTGAGAGTTTAACAT 58.813 36.000 0.00 0.00 0.00 2.71
545 548 3.565764 CCTCTTGGCACCATATTGAGA 57.434 47.619 0.00 1.08 0.00 3.27
580 583 7.067496 TGGTTCAGACTATGTTTCTTCTTCT 57.933 36.000 0.00 0.00 0.00 2.85
581 584 7.730364 TTGGTTCAGACTATGTTTCTTCTTC 57.270 36.000 0.00 0.00 0.00 2.87
584 587 8.099364 TGATTTGGTTCAGACTATGTTTCTTC 57.901 34.615 0.00 0.00 0.00 2.87
604 610 4.096681 GGGGTTGAGATTTCCCTTGATTT 58.903 43.478 0.00 0.00 40.88 2.17
611 617 1.636003 ACTGAGGGGTTGAGATTTCCC 59.364 52.381 0.00 0.00 40.41 3.97
629 635 2.259818 CCGCGCTCAGAGTCAACT 59.740 61.111 5.56 0.00 0.00 3.16
670 676 2.901042 CCCCGAGTGCCTAGGTTC 59.099 66.667 11.31 5.39 0.00 3.62
677 687 4.208686 CTAGACGCCCCGAGTGCC 62.209 72.222 0.00 0.00 0.00 5.01
692 702 2.160219 CGTGTAGAAGTACGGTGCACTA 59.840 50.000 17.98 0.00 36.71 2.74
707 717 4.415332 AGACGTGCCGCCGTGTAG 62.415 66.667 10.96 0.00 41.98 2.74
766 776 3.051581 AGCCATCATGGACATTACCTCT 58.948 45.455 8.30 0.00 40.96 3.69
768 778 4.598807 TCATAGCCATCATGGACATTACCT 59.401 41.667 8.30 0.00 40.96 3.08
770 780 7.175467 TGAAATCATAGCCATCATGGACATTAC 59.825 37.037 8.30 0.00 40.96 1.89
771 781 7.232910 TGAAATCATAGCCATCATGGACATTA 58.767 34.615 8.30 0.00 40.96 1.90
772 782 6.072649 TGAAATCATAGCCATCATGGACATT 58.927 36.000 8.30 0.00 40.96 2.71
773 783 5.637127 TGAAATCATAGCCATCATGGACAT 58.363 37.500 8.30 0.00 40.96 3.06
774 784 5.051409 TGAAATCATAGCCATCATGGACA 57.949 39.130 8.30 0.00 40.96 4.02
775 785 4.082895 GCTGAAATCATAGCCATCATGGAC 60.083 45.833 8.30 0.00 40.96 4.02
776 786 4.077108 GCTGAAATCATAGCCATCATGGA 58.923 43.478 8.30 0.00 40.96 3.41
777 787 4.079970 AGCTGAAATCATAGCCATCATGG 58.920 43.478 0.00 0.00 40.76 3.66
778 788 5.461526 CAAGCTGAAATCATAGCCATCATG 58.538 41.667 0.00 0.00 40.76 3.07
779 789 4.523173 CCAAGCTGAAATCATAGCCATCAT 59.477 41.667 0.00 0.00 40.76 2.45
780 790 3.887110 CCAAGCTGAAATCATAGCCATCA 59.113 43.478 0.00 0.00 40.76 3.07
781 791 4.139786 TCCAAGCTGAAATCATAGCCATC 58.860 43.478 0.00 0.00 40.76 3.51
785 795 4.060900 TCGATCCAAGCTGAAATCATAGC 58.939 43.478 0.00 0.00 40.18 2.97
837 850 4.215965 GACTAATTTTCTTTTGCACGCGA 58.784 39.130 15.93 0.00 0.00 5.87
849 864 6.355638 CCATTGCGTATCTCGACTAATTTTC 58.644 40.000 0.00 0.00 42.86 2.29
896 911 6.770746 AGAACGAGCTAGGAGTATAACAAA 57.229 37.500 0.00 0.00 0.00 2.83
910 925 4.698780 TGGCGTGTATATATAGAACGAGCT 59.301 41.667 22.85 0.00 0.00 4.09
911 926 4.978186 TGGCGTGTATATATAGAACGAGC 58.022 43.478 22.85 12.58 0.00 5.03
974 990 2.521126 TGATCGACAGAGGTGGTTGTA 58.479 47.619 0.00 0.00 0.00 2.41
975 991 1.338107 TGATCGACAGAGGTGGTTGT 58.662 50.000 0.00 0.00 0.00 3.32
1430 1488 0.946700 CGTGTCCATGTTACGTGGCA 60.947 55.000 18.15 15.66 36.66 4.92
1431 1489 1.632046 CCGTGTCCATGTTACGTGGC 61.632 60.000 18.15 13.45 36.66 5.01
1448 1512 0.392998 ATGGGCAAGTAAGTGCTCCG 60.393 55.000 0.00 0.00 44.96 4.63
1697 1807 4.151335 CACTGGCGAGAAAGATATATGCAC 59.849 45.833 1.44 0.00 0.00 4.57
2039 2200 2.281484 AAGTCGGTGCGGTGCATT 60.281 55.556 0.00 0.00 41.91 3.56
2040 2201 2.742372 GAAGTCGGTGCGGTGCAT 60.742 61.111 0.00 0.00 41.91 3.96
2237 2402 0.033504 GCACGATGACGGGGATATGT 59.966 55.000 0.00 0.00 43.78 2.29
2404 2569 7.612677 ACACTCTTACATTAGTTTACAGAGGG 58.387 38.462 0.00 0.00 0.00 4.30
2453 2618 8.989980 GCTCCGTAAACTAATATAAGAGCATTT 58.010 33.333 0.00 0.00 0.00 2.32
2454 2619 7.328737 CGCTCCGTAAACTAATATAAGAGCATT 59.671 37.037 8.67 0.00 0.00 3.56
2455 2620 6.807230 CGCTCCGTAAACTAATATAAGAGCAT 59.193 38.462 8.67 0.00 0.00 3.79
2456 2621 6.016860 TCGCTCCGTAAACTAATATAAGAGCA 60.017 38.462 8.67 0.00 0.00 4.26
2457 2622 6.376978 TCGCTCCGTAAACTAATATAAGAGC 58.623 40.000 0.00 0.00 0.00 4.09
2458 2623 7.583230 ACTCGCTCCGTAAACTAATATAAGAG 58.417 38.462 0.00 0.00 0.00 2.85
2459 2624 7.502120 ACTCGCTCCGTAAACTAATATAAGA 57.498 36.000 0.00 0.00 0.00 2.10
2460 2625 8.502387 AGTACTCGCTCCGTAAACTAATATAAG 58.498 37.037 0.00 0.00 0.00 1.73
2461 2626 8.383318 AGTACTCGCTCCGTAAACTAATATAA 57.617 34.615 0.00 0.00 0.00 0.98
2462 2627 7.969536 AGTACTCGCTCCGTAAACTAATATA 57.030 36.000 0.00 0.00 0.00 0.86
2463 2628 6.874288 AGTACTCGCTCCGTAAACTAATAT 57.126 37.500 0.00 0.00 0.00 1.28
2464 2629 6.238484 GGAAGTACTCGCTCCGTAAACTAATA 60.238 42.308 0.00 0.00 0.00 0.98
2465 2630 5.449725 GGAAGTACTCGCTCCGTAAACTAAT 60.450 44.000 0.00 0.00 0.00 1.73
2466 2631 4.142600 GGAAGTACTCGCTCCGTAAACTAA 60.143 45.833 0.00 0.00 0.00 2.24
2467 2632 3.375299 GGAAGTACTCGCTCCGTAAACTA 59.625 47.826 0.00 0.00 0.00 2.24
2468 2633 2.163211 GGAAGTACTCGCTCCGTAAACT 59.837 50.000 0.00 0.00 0.00 2.66
2469 2634 2.163211 AGGAAGTACTCGCTCCGTAAAC 59.837 50.000 6.46 0.00 0.00 2.01
2470 2635 2.440409 AGGAAGTACTCGCTCCGTAAA 58.560 47.619 6.46 0.00 0.00 2.01
2471 2636 2.119801 AGGAAGTACTCGCTCCGTAA 57.880 50.000 6.46 0.00 0.00 3.18
2472 2637 2.119801 AAGGAAGTACTCGCTCCGTA 57.880 50.000 6.46 0.00 0.00 4.02
2473 2638 1.201880 GAAAGGAAGTACTCGCTCCGT 59.798 52.381 6.46 1.20 0.00 4.69
2474 2639 1.469423 GGAAAGGAAGTACTCGCTCCG 60.469 57.143 6.46 0.00 0.00 4.63
2475 2640 1.826096 AGGAAAGGAAGTACTCGCTCC 59.174 52.381 4.16 4.16 0.00 4.70
2476 2641 3.596310 AAGGAAAGGAAGTACTCGCTC 57.404 47.619 0.00 0.00 0.00 5.03
2477 2642 3.071167 ACAAAGGAAAGGAAGTACTCGCT 59.929 43.478 0.00 0.00 0.00 4.93
2478 2643 3.400255 ACAAAGGAAAGGAAGTACTCGC 58.600 45.455 0.00 0.00 0.00 5.03
2479 2644 4.628074 TGACAAAGGAAAGGAAGTACTCG 58.372 43.478 0.00 0.00 0.00 4.18
2480 2645 6.937465 AGAATGACAAAGGAAAGGAAGTACTC 59.063 38.462 0.00 0.00 0.00 2.59
2481 2646 6.842676 AGAATGACAAAGGAAAGGAAGTACT 58.157 36.000 0.00 0.00 0.00 2.73
2482 2647 6.937465 AGAGAATGACAAAGGAAAGGAAGTAC 59.063 38.462 0.00 0.00 0.00 2.73
2483 2648 6.936900 CAGAGAATGACAAAGGAAAGGAAGTA 59.063 38.462 0.00 0.00 0.00 2.24
2484 2649 5.767168 CAGAGAATGACAAAGGAAAGGAAGT 59.233 40.000 0.00 0.00 0.00 3.01
2485 2650 6.000219 TCAGAGAATGACAAAGGAAAGGAAG 59.000 40.000 0.00 0.00 31.12 3.46
2486 2651 5.940617 TCAGAGAATGACAAAGGAAAGGAA 58.059 37.500 0.00 0.00 31.12 3.36
2487 2652 5.567037 TCAGAGAATGACAAAGGAAAGGA 57.433 39.130 0.00 0.00 31.12 3.36
2488 2653 5.392811 GCATCAGAGAATGACAAAGGAAAGG 60.393 44.000 0.00 0.00 41.91 3.11
2489 2654 5.415077 AGCATCAGAGAATGACAAAGGAAAG 59.585 40.000 0.00 0.00 41.91 2.62
2490 2655 5.182570 CAGCATCAGAGAATGACAAAGGAAA 59.817 40.000 0.00 0.00 41.91 3.13
2655 2823 6.662414 TTAAGTCATTAAGTGCATTCCTCG 57.338 37.500 0.00 0.00 0.00 4.63
2737 2905 1.802960 ACTTTCTCTGCGCTCAACATG 59.197 47.619 9.73 0.00 0.00 3.21
2752 2920 5.336744 TCATCGGTTTGTGTTGAAACTTTC 58.663 37.500 0.00 0.00 36.30 2.62
2763 2931 9.787532 ATTTATTTTACTCATCATCGGTTTGTG 57.212 29.630 0.00 0.00 0.00 3.33
3046 3314 6.696198 CATATACAAACACGCACTAACTGAG 58.304 40.000 0.00 0.00 0.00 3.35
3047 3315 5.062934 GCATATACAAACACGCACTAACTGA 59.937 40.000 0.00 0.00 0.00 3.41
3117 3385 3.987868 GACAGAAATTACGAGTGCAGTGA 59.012 43.478 0.00 0.00 0.00 3.41
3125 3393 7.595502 ACAAGTAAGTGAGACAGAAATTACGAG 59.404 37.037 0.00 0.00 0.00 4.18
3143 3411 0.534203 ACGGGCACACCACAAGTAAG 60.534 55.000 0.00 0.00 40.22 2.34
3146 3414 0.534203 CTAACGGGCACACCACAAGT 60.534 55.000 0.00 0.00 40.22 3.16
3147 3415 1.852067 GCTAACGGGCACACCACAAG 61.852 60.000 0.00 0.00 40.22 3.16
3151 3449 4.338710 GGGCTAACGGGCACACCA 62.339 66.667 0.00 0.00 42.84 4.17
3204 3506 2.180769 CACGCGGACCGAGATGAA 59.819 61.111 25.04 0.00 41.02 2.57
3205 3507 2.748647 TCACGCGGACCGAGATGA 60.749 61.111 25.04 19.12 41.02 2.92
3251 3554 0.249955 CCCCAACCAATGCCATCAAC 59.750 55.000 0.00 0.00 0.00 3.18
3253 3556 0.903924 CACCCCAACCAATGCCATCA 60.904 55.000 0.00 0.00 0.00 3.07
3254 3557 0.904394 ACACCCCAACCAATGCCATC 60.904 55.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.