Multiple sequence alignment - TraesCS6D01G365700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G365700 chr6D 100.000 3375 0 0 1 3375 454659971 454656597 0.000000e+00 6233.0
1 TraesCS6D01G365700 chr6D 87.954 1926 160 40 565 2443 454825424 454827324 0.000000e+00 2206.0
2 TraesCS6D01G365700 chr6D 85.102 1564 156 48 830 2362 454749670 454748153 0.000000e+00 1526.0
3 TraesCS6D01G365700 chr6D 83.939 990 122 25 1210 2174 454672983 454673960 0.000000e+00 913.0
4 TraesCS6D01G365700 chr6D 95.707 396 17 0 130 525 454823921 454824316 3.670000e-179 638.0
5 TraesCS6D01G365700 chr6D 77.193 1083 181 48 1065 2105 454734289 454735347 3.780000e-159 571.0
6 TraesCS6D01G365700 chr6D 94.253 174 10 0 995 1168 454662408 454662581 2.000000e-67 267.0
7 TraesCS6D01G365700 chr6D 83.019 318 21 13 526 834 454776603 454776310 1.200000e-64 257.0
8 TraesCS6D01G365700 chr6D 87.879 198 20 3 2476 2673 454674012 454674205 2.620000e-56 230.0
9 TraesCS6D01G365700 chr6D 91.566 83 7 0 130 212 395503494 395503576 7.650000e-22 115.0
10 TraesCS6D01G365700 chr6A 82.882 2401 270 84 130 2443 601145938 601148284 0.000000e+00 2026.0
11 TraesCS6D01G365700 chr6A 82.817 1292 137 54 871 2112 601033249 601031993 0.000000e+00 1077.0
12 TraesCS6D01G365700 chr6A 83.376 1161 119 53 532 1643 600913880 600912745 0.000000e+00 1007.0
13 TraesCS6D01G365700 chr6A 85.664 858 85 19 2008 2840 601138011 601137167 0.000000e+00 869.0
14 TraesCS6D01G365700 chr6A 87.769 744 64 16 2112 2831 600897462 600896722 0.000000e+00 845.0
15 TraesCS6D01G365700 chr6A 81.762 806 104 29 997 1766 600978182 600977384 4.750000e-178 634.0
16 TraesCS6D01G365700 chr6A 82.109 749 84 23 2232 2948 601008608 601007878 2.240000e-166 595.0
17 TraesCS6D01G365700 chr6A 82.104 637 94 10 1758 2382 600977207 600976579 8.290000e-146 527.0
18 TraesCS6D01G365700 chr6A 76.454 1083 171 51 1065 2104 601166299 601165258 8.350000e-141 510.0
19 TraesCS6D01G365700 chr6A 83.974 312 31 14 995 1287 601138332 601138021 7.130000e-72 281.0
20 TraesCS6D01G365700 chr6A 86.364 198 14 6 532 724 600964749 600964560 1.590000e-48 204.0
21 TraesCS6D01G365700 chr6A 94.574 129 7 0 1 129 601144690 601144818 2.050000e-47 200.0
22 TraesCS6D01G365700 chr6A 89.809 157 12 4 526 681 601033401 601033248 7.390000e-47 198.0
23 TraesCS6D01G365700 chr6A 95.050 101 3 2 2850 2949 600887251 600887152 1.250000e-34 158.0
24 TraesCS6D01G365700 chr6B 85.506 1918 171 55 693 2557 691633740 691631877 0.000000e+00 1903.0
25 TraesCS6D01G365700 chr6B 82.840 2162 247 69 865 2949 691783999 691781885 0.000000e+00 1823.0
26 TraesCS6D01G365700 chr6B 84.740 616 70 13 1836 2444 691788155 691788753 2.240000e-166 595.0
27 TraesCS6D01G365700 chr6B 76.098 774 112 46 330 1064 691787414 691788153 1.500000e-88 337.0
28 TraesCS6D01G365700 chr6B 81.860 430 32 21 2544 2949 691631673 691631266 1.510000e-83 320.0
29 TraesCS6D01G365700 chr6B 81.463 410 38 18 2573 2949 691629361 691628957 5.470000e-78 302.0
30 TraesCS6D01G365700 chr6B 89.720 107 6 5 538 644 691633835 691633734 7.600000e-27 132.0
31 TraesCS6D01G365700 chr2D 89.655 145 14 1 284 428 7337546 7337689 2.070000e-42 183.0
32 TraesCS6D01G365700 chr2D 87.671 146 17 1 284 429 336511278 336511134 5.790000e-38 169.0
33 TraesCS6D01G365700 chr2D 87.586 145 17 1 284 428 618415819 618415962 2.080000e-37 167.0
34 TraesCS6D01G365700 chr3D 88.276 145 16 1 284 428 520465902 520466045 4.480000e-39 172.0
35 TraesCS6D01G365700 chr1D 86.577 149 20 0 284 432 437855232 437855380 7.490000e-37 165.0
36 TraesCS6D01G365700 chr1D 90.123 81 8 0 131 211 414285394 414285314 4.610000e-19 106.0
37 TraesCS6D01G365700 chr5A 86.667 150 17 3 284 432 94745071 94744924 2.690000e-36 163.0
38 TraesCS6D01G365700 chr2B 85.000 160 23 1 284 443 117888386 117888228 9.690000e-36 161.0
39 TraesCS6D01G365700 chr7B 91.358 81 7 0 131 211 627641087 627641167 9.900000e-21 111.0
40 TraesCS6D01G365700 chr5B 90.123 81 8 0 131 211 266012891 266012971 4.610000e-19 106.0
41 TraesCS6D01G365700 chr5B 92.308 39 2 1 2518 2556 566975539 566975576 2.000000e-03 54.7
42 TraesCS6D01G365700 chr4D 90.123 81 8 0 131 211 165756639 165756719 4.610000e-19 106.0
43 TraesCS6D01G365700 chr4D 90.123 81 8 0 131 211 339065019 339064939 4.610000e-19 106.0
44 TraesCS6D01G365700 chr4A 90.123 81 8 0 131 211 718416331 718416251 4.610000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G365700 chr6D 454656597 454659971 3374 True 6233.00 6233 100.00000 1 3375 1 chr6D.!!$R1 3374
1 TraesCS6D01G365700 chr6D 454748153 454749670 1517 True 1526.00 1526 85.10200 830 2362 1 chr6D.!!$R2 1532
2 TraesCS6D01G365700 chr6D 454823921 454827324 3403 False 1422.00 2206 91.83050 130 2443 2 chr6D.!!$F5 2313
3 TraesCS6D01G365700 chr6D 454672983 454674205 1222 False 571.50 913 85.90900 1210 2673 2 chr6D.!!$F4 1463
4 TraesCS6D01G365700 chr6D 454734289 454735347 1058 False 571.00 571 77.19300 1065 2105 1 chr6D.!!$F3 1040
5 TraesCS6D01G365700 chr6A 601144690 601148284 3594 False 1113.00 2026 88.72800 1 2443 2 chr6A.!!$F1 2442
6 TraesCS6D01G365700 chr6A 600912745 600913880 1135 True 1007.00 1007 83.37600 532 1643 1 chr6A.!!$R3 1111
7 TraesCS6D01G365700 chr6A 600896722 600897462 740 True 845.00 845 87.76900 2112 2831 1 chr6A.!!$R2 719
8 TraesCS6D01G365700 chr6A 601031993 601033401 1408 True 637.50 1077 86.31300 526 2112 2 chr6A.!!$R8 1586
9 TraesCS6D01G365700 chr6A 601007878 601008608 730 True 595.00 595 82.10900 2232 2948 1 chr6A.!!$R5 716
10 TraesCS6D01G365700 chr6A 600976579 600978182 1603 True 580.50 634 81.93300 997 2382 2 chr6A.!!$R7 1385
11 TraesCS6D01G365700 chr6A 601137167 601138332 1165 True 575.00 869 84.81900 995 2840 2 chr6A.!!$R9 1845
12 TraesCS6D01G365700 chr6A 601165258 601166299 1041 True 510.00 510 76.45400 1065 2104 1 chr6A.!!$R6 1039
13 TraesCS6D01G365700 chr6B 691781885 691783999 2114 True 1823.00 1823 82.84000 865 2949 1 chr6B.!!$R1 2084
14 TraesCS6D01G365700 chr6B 691628957 691633835 4878 True 664.25 1903 84.63725 538 2949 4 chr6B.!!$R2 2411
15 TraesCS6D01G365700 chr6B 691787414 691788753 1339 False 466.00 595 80.41900 330 2444 2 chr6B.!!$F1 2114

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 1381 1.073098 AACACCTTTACCAGAGGGGG 58.927 55.0 0.0 0.0 42.21 5.40 F
1419 3736 0.038709 GTTCACTCACTCTGCTCGCT 60.039 55.0 0.0 0.0 0.00 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1430 3747 0.114364 ACGGCCCTTCCTTGGAAAAT 59.886 50.0 0.0 0.0 0.0 1.82 R
3049 8247 0.031857 CAAAAATGCCGCTGACCACA 59.968 50.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.425773 CGCAAATAGCATCGCCGC 60.426 61.111 0.00 0.00 46.13 6.53
57 58 2.433145 CGGTCATGCTCACAGCGT 60.433 61.111 0.00 0.00 46.26 5.07
76 77 2.512286 CGGTCACAGCCATCGCAT 60.512 61.111 0.00 0.00 37.52 4.73
96 97 2.193127 TCACCCCGATTCACTATGGTT 58.807 47.619 0.00 0.00 0.00 3.67
103 104 3.181507 CCGATTCACTATGGTTGTGCAAG 60.182 47.826 0.00 0.00 35.58 4.01
112 113 3.594775 TTGTGCAAGCAGCCACCG 61.595 61.111 0.00 0.00 44.83 4.94
261 1381 1.073098 AACACCTTTACCAGAGGGGG 58.927 55.000 0.00 0.00 42.21 5.40
339 1459 6.599437 ACTACGTACAAATCAAAATGAGTGC 58.401 36.000 0.00 0.00 0.00 4.40
508 1631 5.222213 ACCAGAGAGGAAATTCAAATCCAGT 60.222 40.000 0.00 0.00 41.22 4.00
528 1651 8.598202 TCCAGTACATTTCAATAGTACTACCA 57.402 34.615 4.31 0.00 44.71 3.25
1173 3474 1.153229 GGACCCCGGTAAGTGCATC 60.153 63.158 0.00 0.00 0.00 3.91
1187 3488 0.107703 TGCATCGGTCCATGAACCTC 60.108 55.000 0.00 0.00 37.15 3.85
1193 3494 1.573108 GGTCCATGAACCTCTCTCCA 58.427 55.000 0.00 0.00 36.32 3.86
1195 3496 1.134965 GTCCATGAACCTCTCTCCACG 60.135 57.143 0.00 0.00 0.00 4.94
1197 3498 1.550524 CCATGAACCTCTCTCCACGAA 59.449 52.381 0.00 0.00 0.00 3.85
1200 3501 3.319137 TGAACCTCTCTCCACGAATTG 57.681 47.619 0.00 0.00 0.00 2.32
1203 3517 1.205893 ACCTCTCTCCACGAATTGCTC 59.794 52.381 0.00 0.00 0.00 4.26
1204 3518 1.480137 CCTCTCTCCACGAATTGCTCT 59.520 52.381 0.00 0.00 0.00 4.09
1223 3537 1.951130 CATCTCTAATGGCGCGCGT 60.951 57.895 32.35 14.30 0.00 6.01
1226 3540 3.142867 CTCTAATGGCGCGCGTGTG 62.143 63.158 32.35 13.81 0.00 3.82
1228 3542 3.022401 CTAATGGCGCGCGTGTGTT 62.022 57.895 32.35 21.56 0.00 3.32
1389 3706 2.990479 GCGTCCCCTGTCTCCAAT 59.010 61.111 0.00 0.00 0.00 3.16
1417 3734 1.268079 TCAGTTCACTCACTCTGCTCG 59.732 52.381 0.00 0.00 0.00 5.03
1419 3736 0.038709 GTTCACTCACTCTGCTCGCT 60.039 55.000 0.00 0.00 0.00 4.93
1422 3739 2.095461 TCACTCACTCTGCTCGCTTAT 58.905 47.619 0.00 0.00 0.00 1.73
1429 3746 3.061831 CACTCTGCTCGCTTATTCTTGTG 59.938 47.826 0.00 0.00 0.00 3.33
1430 3747 3.056536 ACTCTGCTCGCTTATTCTTGTGA 60.057 43.478 0.00 0.00 0.00 3.58
1432 3749 4.507710 TCTGCTCGCTTATTCTTGTGATT 58.492 39.130 0.00 0.00 0.00 2.57
1433 3750 4.937620 TCTGCTCGCTTATTCTTGTGATTT 59.062 37.500 0.00 0.00 0.00 2.17
1435 3760 5.631026 TGCTCGCTTATTCTTGTGATTTTC 58.369 37.500 0.00 0.00 0.00 2.29
1437 3762 5.391950 GCTCGCTTATTCTTGTGATTTTCCA 60.392 40.000 0.00 0.00 0.00 3.53
1440 3765 5.801947 CGCTTATTCTTGTGATTTTCCAAGG 59.198 40.000 0.00 0.00 38.83 3.61
1452 3779 2.672996 CCAAGGAAGGGCCGTGTG 60.673 66.667 0.00 0.00 43.68 3.82
1472 3821 3.745975 GTGCTTACTTGCTACATGTGTGA 59.254 43.478 9.11 0.00 0.00 3.58
1490 3852 1.621317 TGATCGTTGCAGGACCTTGTA 59.379 47.619 0.00 0.00 0.00 2.41
1511 3873 3.745803 GTCGCCGTCGAGGGAACT 61.746 66.667 27.69 0.00 46.46 3.01
1683 4045 3.821033 AGGCGTAAGAACAAGCTCATTTT 59.179 39.130 0.00 0.00 43.02 1.82
1689 4051 5.956068 AAGAACAAGCTCATTTTCCTCTC 57.044 39.130 0.00 0.00 0.00 3.20
1694 4056 5.923204 ACAAGCTCATTTTCCTCTCGATAT 58.077 37.500 0.00 0.00 0.00 1.63
1706 4087 1.268079 TCTCGATATTCTGCTCTGCCG 59.732 52.381 0.00 0.00 0.00 5.69
1734 4119 4.695455 ACGATTGACCTGAACTTACCAATG 59.305 41.667 0.00 0.00 0.00 2.82
1763 4150 3.374058 GTGTGCAGAACTTGTACTGTTGT 59.626 43.478 9.01 3.57 42.25 3.32
1769 4341 3.936453 AGAACTTGTACTGTTGTGCGAAA 59.064 39.130 9.01 0.00 0.00 3.46
1778 4350 1.612950 TGTTGTGCGAAAATGATGGCT 59.387 42.857 0.00 0.00 0.00 4.75
2108 4686 2.000429 ACATAACCGCCAAGTACGTC 58.000 50.000 0.00 0.00 0.00 4.34
2109 4687 0.918619 CATAACCGCCAAGTACGTCG 59.081 55.000 0.00 0.00 0.00 5.12
2110 4688 0.810648 ATAACCGCCAAGTACGTCGA 59.189 50.000 0.00 0.00 0.00 4.20
2186 4811 4.092279 TCACCATGGATTTTGTTGGCATA 58.908 39.130 21.47 0.00 32.26 3.14
2371 5007 1.068832 CACAGAAGCGCGCGTACTTA 61.069 55.000 32.35 0.00 0.00 2.24
2515 5154 3.369546 AGCAAAGTGTGGCATGTAAAC 57.630 42.857 0.00 0.00 0.00 2.01
2557 5415 7.387122 ACAAGTATTTTAGAAACGGAAGGAGTC 59.613 37.037 0.00 0.00 0.00 3.36
2652 5511 7.912056 ATGAATGATATCGTAGTTTGGGATG 57.088 36.000 0.00 0.00 0.00 3.51
2673 5533 9.396022 GGGATGAATAGAGAAAAATGTGTCTTA 57.604 33.333 0.00 0.00 0.00 2.10
2785 5677 1.072648 CGAAAAGGGGGTGGTCAAGTA 59.927 52.381 0.00 0.00 0.00 2.24
2809 7984 5.745312 TGTTTGACAGAGATAGTGATGGT 57.255 39.130 0.00 0.00 0.00 3.55
2817 7992 5.187772 ACAGAGATAGTGATGGTTAGTTGCA 59.812 40.000 0.00 0.00 0.00 4.08
2826 8001 6.714810 AGTGATGGTTAGTTGCAGTTATGAAA 59.285 34.615 0.00 0.00 0.00 2.69
2841 8016 3.930634 ATGAAAGTGCAGAAAAGGCTC 57.069 42.857 0.00 0.00 0.00 4.70
2844 8019 0.819259 AAGTGCAGAAAAGGCTCGCA 60.819 50.000 0.00 0.00 0.00 5.10
2848 8045 1.795170 GCAGAAAAGGCTCGCAACCA 61.795 55.000 0.00 0.00 0.00 3.67
2921 8119 4.335735 TCTCCAATGTGGGATTTTGGAT 57.664 40.909 4.24 0.00 45.76 3.41
2940 8138 5.410924 TGGATGTATTGTCTCTTCTCAACG 58.589 41.667 0.00 0.00 0.00 4.10
2941 8139 5.047306 TGGATGTATTGTCTCTTCTCAACGT 60.047 40.000 0.00 0.00 0.00 3.99
2942 8140 5.517054 GGATGTATTGTCTCTTCTCAACGTC 59.483 44.000 0.00 0.00 0.00 4.34
2949 8147 3.849145 GTCTCTTCTCAACGTCTTGATCG 59.151 47.826 0.00 0.00 35.78 3.69
2950 8148 3.119814 TCTCTTCTCAACGTCTTGATCGG 60.120 47.826 0.00 0.00 35.78 4.18
2951 8149 2.557056 TCTTCTCAACGTCTTGATCGGT 59.443 45.455 0.00 0.00 35.78 4.69
2952 8150 2.631418 TCTCAACGTCTTGATCGGTC 57.369 50.000 0.00 0.00 35.78 4.79
2953 8151 1.201647 TCTCAACGTCTTGATCGGTCC 59.798 52.381 0.00 0.00 35.78 4.46
2954 8152 1.202582 CTCAACGTCTTGATCGGTCCT 59.797 52.381 0.00 0.00 35.78 3.85
2955 8153 1.616865 TCAACGTCTTGATCGGTCCTT 59.383 47.619 0.00 0.00 31.00 3.36
2956 8154 2.036733 TCAACGTCTTGATCGGTCCTTT 59.963 45.455 0.00 0.00 31.00 3.11
2957 8155 2.806244 CAACGTCTTGATCGGTCCTTTT 59.194 45.455 0.00 0.00 0.00 2.27
2958 8156 3.947910 ACGTCTTGATCGGTCCTTTTA 57.052 42.857 0.00 0.00 0.00 1.52
2959 8157 3.582780 ACGTCTTGATCGGTCCTTTTAC 58.417 45.455 0.00 0.00 0.00 2.01
2960 8158 3.006110 ACGTCTTGATCGGTCCTTTTACA 59.994 43.478 0.00 0.00 0.00 2.41
2961 8159 3.612860 CGTCTTGATCGGTCCTTTTACAG 59.387 47.826 0.00 0.00 0.00 2.74
2962 8160 4.566987 GTCTTGATCGGTCCTTTTACAGT 58.433 43.478 0.00 0.00 0.00 3.55
2963 8161 5.620654 CGTCTTGATCGGTCCTTTTACAGTA 60.621 44.000 0.00 0.00 0.00 2.74
2964 8162 5.575995 GTCTTGATCGGTCCTTTTACAGTAC 59.424 44.000 0.00 0.00 0.00 2.73
2965 8163 5.244402 TCTTGATCGGTCCTTTTACAGTACA 59.756 40.000 0.00 0.00 0.00 2.90
2966 8164 5.670792 TGATCGGTCCTTTTACAGTACAT 57.329 39.130 0.00 0.00 0.00 2.29
2967 8165 5.657474 TGATCGGTCCTTTTACAGTACATC 58.343 41.667 0.00 0.00 0.00 3.06
2968 8166 5.186215 TGATCGGTCCTTTTACAGTACATCA 59.814 40.000 0.00 0.00 0.00 3.07
2969 8167 5.068234 TCGGTCCTTTTACAGTACATCAG 57.932 43.478 0.00 0.00 0.00 2.90
2970 8168 4.081862 TCGGTCCTTTTACAGTACATCAGG 60.082 45.833 0.00 0.00 0.00 3.86
2971 8169 4.322499 CGGTCCTTTTACAGTACATCAGGT 60.322 45.833 0.00 0.00 0.00 4.00
2972 8170 5.105635 CGGTCCTTTTACAGTACATCAGGTA 60.106 44.000 0.00 0.00 0.00 3.08
2973 8171 6.572898 CGGTCCTTTTACAGTACATCAGGTAA 60.573 42.308 0.00 0.00 32.72 2.85
2974 8172 7.163441 GGTCCTTTTACAGTACATCAGGTAAA 58.837 38.462 0.00 0.00 34.82 2.01
2975 8173 7.827729 GGTCCTTTTACAGTACATCAGGTAAAT 59.172 37.037 0.00 0.00 36.10 1.40
2976 8174 9.880157 GTCCTTTTACAGTACATCAGGTAAATA 57.120 33.333 0.00 0.00 36.10 1.40
2980 8178 9.621629 TTTTACAGTACATCAGGTAAATATGGG 57.378 33.333 0.00 0.00 36.10 4.00
2981 8179 5.621193 ACAGTACATCAGGTAAATATGGGC 58.379 41.667 0.00 0.00 32.72 5.36
2982 8180 5.003804 CAGTACATCAGGTAAATATGGGCC 58.996 45.833 0.00 0.00 32.72 5.80
2983 8181 4.663120 AGTACATCAGGTAAATATGGGCCA 59.337 41.667 9.61 9.61 32.72 5.36
2984 8182 4.747265 ACATCAGGTAAATATGGGCCAT 57.253 40.909 24.69 24.69 0.00 4.40
2985 8183 5.078683 ACATCAGGTAAATATGGGCCATT 57.921 39.130 26.58 10.50 0.00 3.16
2986 8184 5.466819 ACATCAGGTAAATATGGGCCATTT 58.533 37.500 26.58 17.13 0.00 2.32
2987 8185 6.619464 ACATCAGGTAAATATGGGCCATTTA 58.381 36.000 26.58 16.01 0.00 1.40
2988 8186 7.248237 ACATCAGGTAAATATGGGCCATTTAT 58.752 34.615 26.58 10.46 32.17 1.40
2989 8187 7.734410 ACATCAGGTAAATATGGGCCATTTATT 59.266 33.333 26.58 16.35 32.17 1.40
2990 8188 8.596293 CATCAGGTAAATATGGGCCATTTATTT 58.404 33.333 26.58 24.80 32.17 1.40
2991 8189 8.560124 TCAGGTAAATATGGGCCATTTATTTT 57.440 30.769 26.58 19.61 32.17 1.82
2992 8190 8.997734 TCAGGTAAATATGGGCCATTTATTTTT 58.002 29.630 26.58 17.41 32.17 1.94
2998 8196 9.865152 AAATATGGGCCATTTATTTTTATGCTT 57.135 25.926 26.58 0.87 0.00 3.91
2999 8197 8.851541 ATATGGGCCATTTATTTTTATGCTTG 57.148 30.769 26.58 0.00 0.00 4.01
3000 8198 5.435291 TGGGCCATTTATTTTTATGCTTGG 58.565 37.500 0.00 0.00 0.00 3.61
3001 8199 5.190528 TGGGCCATTTATTTTTATGCTTGGA 59.809 36.000 0.00 0.00 0.00 3.53
3002 8200 5.527214 GGGCCATTTATTTTTATGCTTGGAC 59.473 40.000 4.39 0.00 0.00 4.02
3003 8201 5.234116 GGCCATTTATTTTTATGCTTGGACG 59.766 40.000 0.00 0.00 0.00 4.79
3004 8202 5.234116 GCCATTTATTTTTATGCTTGGACGG 59.766 40.000 0.00 0.00 0.00 4.79
3005 8203 5.234116 CCATTTATTTTTATGCTTGGACGGC 59.766 40.000 0.00 0.00 0.00 5.68
3006 8204 2.959507 ATTTTTATGCTTGGACGGCC 57.040 45.000 0.00 0.00 0.00 6.13
3007 8205 0.892063 TTTTTATGCTTGGACGGCCC 59.108 50.000 3.83 0.00 0.00 5.80
3008 8206 0.251386 TTTTATGCTTGGACGGCCCA 60.251 50.000 3.83 0.00 44.93 5.36
3009 8207 0.963355 TTTATGCTTGGACGGCCCAC 60.963 55.000 3.83 0.00 46.62 4.61
3010 8208 2.130821 TTATGCTTGGACGGCCCACA 62.131 55.000 3.83 0.00 46.62 4.17
3011 8209 1.920734 TATGCTTGGACGGCCCACAT 61.921 55.000 3.83 8.61 46.62 3.21
3012 8210 1.920734 ATGCTTGGACGGCCCACATA 61.921 55.000 3.83 0.00 46.62 2.29
3013 8211 1.377987 GCTTGGACGGCCCACATAA 60.378 57.895 3.83 0.00 46.62 1.90
3014 8212 1.376609 GCTTGGACGGCCCACATAAG 61.377 60.000 3.83 1.43 46.62 1.73
3015 8213 0.748005 CTTGGACGGCCCACATAAGG 60.748 60.000 3.83 0.00 46.62 2.69
3016 8214 2.830186 TTGGACGGCCCACATAAGGC 62.830 60.000 3.83 0.00 46.62 4.35
3027 8225 5.751243 CCCACATAAGGCAATACTACAAC 57.249 43.478 0.00 0.00 0.00 3.32
3028 8226 5.189928 CCCACATAAGGCAATACTACAACA 58.810 41.667 0.00 0.00 0.00 3.33
3029 8227 5.296780 CCCACATAAGGCAATACTACAACAG 59.703 44.000 0.00 0.00 0.00 3.16
3030 8228 6.112734 CCACATAAGGCAATACTACAACAGA 58.887 40.000 0.00 0.00 0.00 3.41
3031 8229 6.767902 CCACATAAGGCAATACTACAACAGAT 59.232 38.462 0.00 0.00 0.00 2.90
3032 8230 7.283127 CCACATAAGGCAATACTACAACAGATT 59.717 37.037 0.00 0.00 0.00 2.40
3033 8231 8.677300 CACATAAGGCAATACTACAACAGATTT 58.323 33.333 0.00 0.00 0.00 2.17
3034 8232 9.243105 ACATAAGGCAATACTACAACAGATTTT 57.757 29.630 0.00 0.00 0.00 1.82
3037 8235 7.759489 AGGCAATACTACAACAGATTTTTCA 57.241 32.000 0.00 0.00 0.00 2.69
3038 8236 7.820648 AGGCAATACTACAACAGATTTTTCAG 58.179 34.615 0.00 0.00 0.00 3.02
3039 8237 7.448469 AGGCAATACTACAACAGATTTTTCAGT 59.552 33.333 0.00 0.00 0.00 3.41
3040 8238 8.726988 GGCAATACTACAACAGATTTTTCAGTA 58.273 33.333 0.00 0.00 0.00 2.74
3041 8239 9.760660 GCAATACTACAACAGATTTTTCAGTAG 57.239 33.333 0.00 0.00 35.01 2.57
3057 8255 9.653287 TTTTTCAGTAGTATATTCTGTGGTCAG 57.347 33.333 0.00 0.00 42.54 3.51
3058 8256 6.392625 TCAGTAGTATATTCTGTGGTCAGC 57.607 41.667 0.00 0.00 41.10 4.26
3059 8257 5.008712 TCAGTAGTATATTCTGTGGTCAGCG 59.991 44.000 0.00 0.00 41.10 5.18
3060 8258 3.735237 AGTATATTCTGTGGTCAGCGG 57.265 47.619 0.00 0.00 41.10 5.52
3061 8259 2.135933 GTATATTCTGTGGTCAGCGGC 58.864 52.381 0.00 0.00 41.10 6.53
3062 8260 0.541392 ATATTCTGTGGTCAGCGGCA 59.459 50.000 1.45 0.00 41.10 5.69
3063 8261 0.541392 TATTCTGTGGTCAGCGGCAT 59.459 50.000 1.45 0.00 41.10 4.40
3064 8262 0.322816 ATTCTGTGGTCAGCGGCATT 60.323 50.000 1.45 0.00 41.10 3.56
3065 8263 0.537143 TTCTGTGGTCAGCGGCATTT 60.537 50.000 1.45 0.00 41.10 2.32
3066 8264 0.537143 TCTGTGGTCAGCGGCATTTT 60.537 50.000 1.45 0.00 41.10 1.82
3067 8265 0.314935 CTGTGGTCAGCGGCATTTTT 59.685 50.000 1.45 0.00 34.79 1.94
3068 8266 0.031857 TGTGGTCAGCGGCATTTTTG 59.968 50.000 1.45 0.00 0.00 2.44
3069 8267 0.667184 GTGGTCAGCGGCATTTTTGG 60.667 55.000 1.45 0.00 0.00 3.28
3070 8268 1.112315 TGGTCAGCGGCATTTTTGGT 61.112 50.000 1.45 0.00 0.00 3.67
3071 8269 0.885196 GGTCAGCGGCATTTTTGGTA 59.115 50.000 1.45 0.00 0.00 3.25
3072 8270 1.476488 GGTCAGCGGCATTTTTGGTAT 59.524 47.619 1.45 0.00 0.00 2.73
3073 8271 2.685897 GGTCAGCGGCATTTTTGGTATA 59.314 45.455 1.45 0.00 0.00 1.47
3074 8272 3.317993 GGTCAGCGGCATTTTTGGTATAT 59.682 43.478 1.45 0.00 0.00 0.86
3075 8273 4.537015 GTCAGCGGCATTTTTGGTATATC 58.463 43.478 1.45 0.00 0.00 1.63
3076 8274 4.036262 GTCAGCGGCATTTTTGGTATATCA 59.964 41.667 1.45 0.00 0.00 2.15
3077 8275 4.826733 TCAGCGGCATTTTTGGTATATCAT 59.173 37.500 1.45 0.00 0.00 2.45
3078 8276 5.301551 TCAGCGGCATTTTTGGTATATCATT 59.698 36.000 1.45 0.00 0.00 2.57
3079 8277 5.403166 CAGCGGCATTTTTGGTATATCATTG 59.597 40.000 1.45 0.00 0.00 2.82
3080 8278 5.068987 AGCGGCATTTTTGGTATATCATTGT 59.931 36.000 1.45 0.00 0.00 2.71
3081 8279 5.752955 GCGGCATTTTTGGTATATCATTGTT 59.247 36.000 0.00 0.00 0.00 2.83
3082 8280 6.074356 GCGGCATTTTTGGTATATCATTGTTC 60.074 38.462 0.00 0.00 0.00 3.18
3083 8281 6.977502 CGGCATTTTTGGTATATCATTGTTCA 59.022 34.615 0.00 0.00 0.00 3.18
3084 8282 7.652909 CGGCATTTTTGGTATATCATTGTTCAT 59.347 33.333 0.00 0.00 0.00 2.57
3085 8283 8.981647 GGCATTTTTGGTATATCATTGTTCATC 58.018 33.333 0.00 0.00 0.00 2.92
3086 8284 8.981647 GCATTTTTGGTATATCATTGTTCATCC 58.018 33.333 0.00 0.00 0.00 3.51
3091 8289 8.918202 TTGGTATATCATTGTTCATCCTAACC 57.082 34.615 0.00 0.00 0.00 2.85
3092 8290 7.158697 TGGTATATCATTGTTCATCCTAACCG 58.841 38.462 0.00 0.00 0.00 4.44
3093 8291 7.015779 TGGTATATCATTGTTCATCCTAACCGA 59.984 37.037 0.00 0.00 0.00 4.69
3094 8292 7.876068 GGTATATCATTGTTCATCCTAACCGAA 59.124 37.037 0.00 0.00 0.00 4.30
3095 8293 7.969536 ATATCATTGTTCATCCTAACCGAAG 57.030 36.000 0.00 0.00 0.00 3.79
3096 8294 3.938963 TCATTGTTCATCCTAACCGAAGC 59.061 43.478 0.00 0.00 0.00 3.86
3097 8295 2.396590 TGTTCATCCTAACCGAAGCC 57.603 50.000 0.00 0.00 0.00 4.35
3098 8296 1.906574 TGTTCATCCTAACCGAAGCCT 59.093 47.619 0.00 0.00 0.00 4.58
3099 8297 2.280628 GTTCATCCTAACCGAAGCCTG 58.719 52.381 0.00 0.00 0.00 4.85
3100 8298 0.830648 TCATCCTAACCGAAGCCTGG 59.169 55.000 0.00 0.00 0.00 4.45
3101 8299 0.179045 CATCCTAACCGAAGCCTGGG 60.179 60.000 0.00 0.00 0.00 4.45
3102 8300 1.984288 ATCCTAACCGAAGCCTGGGC 61.984 60.000 3.00 3.00 42.33 5.36
3103 8301 2.668632 CTAACCGAAGCCTGGGCA 59.331 61.111 14.39 0.00 44.88 5.36
3104 8302 1.224592 CTAACCGAAGCCTGGGCAT 59.775 57.895 14.39 1.04 44.88 4.40
3105 8303 0.815615 CTAACCGAAGCCTGGGCATC 60.816 60.000 14.39 10.40 44.88 3.91
3109 8307 3.512516 GAAGCCTGGGCATCGCAC 61.513 66.667 14.39 0.00 44.88 5.34
3113 8311 2.903855 CCTGGGCATCGCACCATC 60.904 66.667 0.00 0.00 35.93 3.51
3114 8312 2.191375 CTGGGCATCGCACCATCT 59.809 61.111 0.00 0.00 35.93 2.90
3115 8313 1.890979 CTGGGCATCGCACCATCTC 60.891 63.158 0.00 0.00 35.93 2.75
3116 8314 2.592861 GGGCATCGCACCATCTCC 60.593 66.667 0.00 0.00 0.00 3.71
3117 8315 2.190313 GGCATCGCACCATCTCCA 59.810 61.111 0.00 0.00 0.00 3.86
3118 8316 1.451927 GGCATCGCACCATCTCCAA 60.452 57.895 0.00 0.00 0.00 3.53
3119 8317 1.442526 GGCATCGCACCATCTCCAAG 61.443 60.000 0.00 0.00 0.00 3.61
3120 8318 1.442526 GCATCGCACCATCTCCAAGG 61.443 60.000 0.00 0.00 0.00 3.61
3121 8319 1.153086 ATCGCACCATCTCCAAGGC 60.153 57.895 0.00 0.00 0.00 4.35
3122 8320 1.630126 ATCGCACCATCTCCAAGGCT 61.630 55.000 0.00 0.00 0.00 4.58
3123 8321 2.110967 CGCACCATCTCCAAGGCTG 61.111 63.158 0.00 0.00 0.00 4.85
3124 8322 1.751927 GCACCATCTCCAAGGCTGG 60.752 63.158 0.00 0.00 45.08 4.85
3125 8323 1.687612 CACCATCTCCAAGGCTGGT 59.312 57.895 0.00 3.05 43.97 4.00
3126 8324 0.393537 CACCATCTCCAAGGCTGGTC 60.394 60.000 0.00 0.00 43.97 4.02
3127 8325 0.842030 ACCATCTCCAAGGCTGGTCA 60.842 55.000 0.00 0.00 43.97 4.02
3128 8326 0.549950 CCATCTCCAAGGCTGGTCAT 59.450 55.000 0.00 0.00 43.97 3.06
3129 8327 1.064166 CCATCTCCAAGGCTGGTCATT 60.064 52.381 0.00 0.00 43.97 2.57
3130 8328 2.622452 CCATCTCCAAGGCTGGTCATTT 60.622 50.000 0.00 0.00 43.97 2.32
3131 8329 2.496899 TCTCCAAGGCTGGTCATTTC 57.503 50.000 0.00 0.00 43.97 2.17
3132 8330 1.089920 CTCCAAGGCTGGTCATTTCG 58.910 55.000 0.00 0.00 43.97 3.46
3133 8331 0.960364 TCCAAGGCTGGTCATTTCGC 60.960 55.000 0.00 0.00 43.97 4.70
3134 8332 1.135315 CAAGGCTGGTCATTTCGCG 59.865 57.895 0.00 0.00 0.00 5.87
3135 8333 1.003839 AAGGCTGGTCATTTCGCGA 60.004 52.632 3.71 3.71 0.00 5.87
3136 8334 1.298859 AAGGCTGGTCATTTCGCGAC 61.299 55.000 9.15 0.00 0.00 5.19
3137 8335 2.395690 GCTGGTCATTTCGCGACG 59.604 61.111 9.15 0.00 34.04 5.12
3138 8336 2.395690 CTGGTCATTTCGCGACGC 59.604 61.111 9.15 10.49 34.04 5.19
3139 8337 3.083600 CTGGTCATTTCGCGACGCC 62.084 63.158 9.15 7.49 34.04 5.68
3140 8338 4.204891 GGTCATTTCGCGACGCCG 62.205 66.667 9.15 9.76 34.04 6.46
3155 8353 3.204119 CCGCATGCTCGCCATCAA 61.204 61.111 17.13 0.00 29.71 2.57
3156 8354 2.023741 CGCATGCTCGCCATCAAC 59.976 61.111 17.13 0.00 29.71 3.18
3157 8355 2.023741 GCATGCTCGCCATCAACG 59.976 61.111 11.37 0.00 29.71 4.10
3158 8356 2.711311 CATGCTCGCCATCAACGG 59.289 61.111 0.00 0.00 29.71 4.44
3165 8363 2.591715 GCCATCAACGGCGGCTAT 60.592 61.111 13.24 0.00 43.52 2.97
3166 8364 2.607892 GCCATCAACGGCGGCTATC 61.608 63.158 13.24 0.00 43.52 2.08
3167 8365 2.310233 CCATCAACGGCGGCTATCG 61.310 63.158 13.24 0.00 42.76 2.92
3179 8377 3.973516 CTATCGCGGGCGGCACTA 61.974 66.667 17.50 6.62 43.84 2.74
3180 8378 3.898627 CTATCGCGGGCGGCACTAG 62.899 68.421 17.50 12.07 43.84 2.57
3194 8392 2.938838 GCACTAGAGCCTAGAAGGAGA 58.061 52.381 14.03 0.00 37.67 3.71
3195 8393 3.496331 GCACTAGAGCCTAGAAGGAGAT 58.504 50.000 14.03 0.00 37.67 2.75
3196 8394 3.255642 GCACTAGAGCCTAGAAGGAGATG 59.744 52.174 14.03 3.88 37.67 2.90
3197 8395 4.724399 CACTAGAGCCTAGAAGGAGATGA 58.276 47.826 14.03 0.00 37.67 2.92
3198 8396 4.518970 CACTAGAGCCTAGAAGGAGATGAC 59.481 50.000 14.03 0.00 37.67 3.06
3199 8397 2.582052 AGAGCCTAGAAGGAGATGACG 58.418 52.381 0.00 0.00 37.67 4.35
3200 8398 2.173782 AGAGCCTAGAAGGAGATGACGA 59.826 50.000 0.00 0.00 37.67 4.20
3201 8399 2.952978 GAGCCTAGAAGGAGATGACGAA 59.047 50.000 0.00 0.00 37.67 3.85
3202 8400 2.955660 AGCCTAGAAGGAGATGACGAAG 59.044 50.000 0.00 0.00 37.67 3.79
3203 8401 2.691011 GCCTAGAAGGAGATGACGAAGT 59.309 50.000 0.00 0.00 41.09 3.01
3228 8426 2.349297 CGTAGGTCTGTCTGTTGTCC 57.651 55.000 0.00 0.00 0.00 4.02
3229 8427 1.611977 CGTAGGTCTGTCTGTTGTCCA 59.388 52.381 0.00 0.00 0.00 4.02
3230 8428 2.607282 CGTAGGTCTGTCTGTTGTCCAC 60.607 54.545 0.00 0.00 0.00 4.02
3231 8429 0.389391 AGGTCTGTCTGTTGTCCACG 59.611 55.000 0.00 0.00 0.00 4.94
3232 8430 1.222115 GGTCTGTCTGTTGTCCACGC 61.222 60.000 0.00 0.00 0.00 5.34
3233 8431 1.069090 TCTGTCTGTTGTCCACGCC 59.931 57.895 0.00 0.00 0.00 5.68
3234 8432 1.227527 CTGTCTGTTGTCCACGCCA 60.228 57.895 0.00 0.00 0.00 5.69
3235 8433 0.603707 CTGTCTGTTGTCCACGCCAT 60.604 55.000 0.00 0.00 0.00 4.40
3236 8434 0.682292 TGTCTGTTGTCCACGCCATA 59.318 50.000 0.00 0.00 0.00 2.74
3237 8435 1.337728 TGTCTGTTGTCCACGCCATAG 60.338 52.381 0.00 0.00 0.00 2.23
3238 8436 0.249120 TCTGTTGTCCACGCCATAGG 59.751 55.000 0.00 0.00 0.00 2.57
3239 8437 1.369091 CTGTTGTCCACGCCATAGGC 61.369 60.000 0.00 0.00 46.75 3.93
3254 8452 3.776656 GGCGTTGCCTACTGTACG 58.223 61.111 0.00 0.00 46.69 3.67
3256 8454 3.776656 CGTTGCCTACTGTACGCC 58.223 61.111 6.38 0.00 0.00 5.68
3257 8455 2.156446 CGTTGCCTACTGTACGCCG 61.156 63.158 6.38 1.14 0.00 6.46
3258 8456 1.080298 GTTGCCTACTGTACGCCGT 60.080 57.895 0.00 0.00 0.00 5.68
3259 8457 1.080366 TTGCCTACTGTACGCCGTG 60.080 57.895 0.00 0.00 0.00 4.94
3260 8458 2.202703 GCCTACTGTACGCCGTGG 60.203 66.667 0.00 0.00 0.00 4.94
3261 8459 2.998279 GCCTACTGTACGCCGTGGT 61.998 63.158 0.00 0.00 0.00 4.16
3262 8460 1.588082 CCTACTGTACGCCGTGGTT 59.412 57.895 0.00 0.00 0.00 3.67
3263 8461 0.037975 CCTACTGTACGCCGTGGTTT 60.038 55.000 0.00 0.00 0.00 3.27
3264 8462 1.606224 CCTACTGTACGCCGTGGTTTT 60.606 52.381 0.00 0.00 0.00 2.43
3265 8463 1.458064 CTACTGTACGCCGTGGTTTTG 59.542 52.381 0.00 0.00 0.00 2.44
3266 8464 0.462403 ACTGTACGCCGTGGTTTTGT 60.462 50.000 0.00 0.00 0.00 2.83
3267 8465 1.202510 ACTGTACGCCGTGGTTTTGTA 60.203 47.619 0.00 0.00 0.00 2.41
3268 8466 2.070783 CTGTACGCCGTGGTTTTGTAT 58.929 47.619 0.00 0.00 0.00 2.29
3269 8467 1.799403 TGTACGCCGTGGTTTTGTATG 59.201 47.619 0.00 0.00 0.00 2.39
3270 8468 0.797542 TACGCCGTGGTTTTGTATGC 59.202 50.000 0.00 0.00 0.00 3.14
3271 8469 1.154112 CGCCGTGGTTTTGTATGCC 60.154 57.895 0.00 0.00 0.00 4.40
3272 8470 1.154112 GCCGTGGTTTTGTATGCCG 60.154 57.895 0.00 0.00 0.00 5.69
3273 8471 1.154112 CCGTGGTTTTGTATGCCGC 60.154 57.895 0.00 0.00 0.00 6.53
3274 8472 1.154112 CGTGGTTTTGTATGCCGCC 60.154 57.895 0.00 0.00 0.00 6.13
3275 8473 1.154112 GTGGTTTTGTATGCCGCCG 60.154 57.895 0.00 0.00 0.00 6.46
3276 8474 1.601197 TGGTTTTGTATGCCGCCGT 60.601 52.632 0.00 0.00 0.00 5.68
3277 8475 1.135939 GGTTTTGTATGCCGCCGTC 59.864 57.895 0.00 0.00 0.00 4.79
3278 8476 1.225908 GTTTTGTATGCCGCCGTCG 60.226 57.895 0.00 0.00 0.00 5.12
3304 8502 4.541648 AGCGTCGCCCCCTCCTAT 62.542 66.667 14.86 0.00 0.00 2.57
3305 8503 3.992317 GCGTCGCCCCCTCCTATC 61.992 72.222 5.75 0.00 0.00 2.08
3306 8504 3.303928 CGTCGCCCCCTCCTATCC 61.304 72.222 0.00 0.00 0.00 2.59
3307 8505 2.201771 GTCGCCCCCTCCTATCCT 59.798 66.667 0.00 0.00 0.00 3.24
3308 8506 1.463824 GTCGCCCCCTCCTATCCTA 59.536 63.158 0.00 0.00 0.00 2.94
3309 8507 0.612453 GTCGCCCCCTCCTATCCTAG 60.612 65.000 0.00 0.00 0.00 3.02
3310 8508 1.985116 CGCCCCCTCCTATCCTAGC 60.985 68.421 0.00 0.00 0.00 3.42
3311 8509 1.613928 GCCCCCTCCTATCCTAGCC 60.614 68.421 0.00 0.00 0.00 3.93
3312 8510 1.305381 CCCCCTCCTATCCTAGCCG 60.305 68.421 0.00 0.00 0.00 5.52
3313 8511 1.774966 CCCCTCCTATCCTAGCCGA 59.225 63.158 0.00 0.00 0.00 5.54
3314 8512 0.612453 CCCCTCCTATCCTAGCCGAC 60.612 65.000 0.00 0.00 0.00 4.79
3315 8513 0.112606 CCCTCCTATCCTAGCCGACA 59.887 60.000 0.00 0.00 0.00 4.35
3316 8514 1.540267 CCTCCTATCCTAGCCGACAG 58.460 60.000 0.00 0.00 0.00 3.51
3317 8515 1.202952 CCTCCTATCCTAGCCGACAGT 60.203 57.143 0.00 0.00 0.00 3.55
3318 8516 2.156098 CTCCTATCCTAGCCGACAGTC 58.844 57.143 0.00 0.00 0.00 3.51
3319 8517 0.875728 CCTATCCTAGCCGACAGTCG 59.124 60.000 16.50 16.50 40.07 4.18
3320 8518 1.595466 CTATCCTAGCCGACAGTCGT 58.405 55.000 21.34 6.76 38.40 4.34
3321 8519 1.532007 CTATCCTAGCCGACAGTCGTC 59.468 57.143 21.34 9.27 38.40 4.20
3322 8520 1.102222 ATCCTAGCCGACAGTCGTCC 61.102 60.000 21.34 11.85 39.11 4.79
3323 8521 1.749638 CCTAGCCGACAGTCGTCCT 60.750 63.158 21.34 17.87 39.11 3.85
3324 8522 1.313812 CCTAGCCGACAGTCGTCCTT 61.314 60.000 21.34 6.60 39.11 3.36
3325 8523 0.526662 CTAGCCGACAGTCGTCCTTT 59.473 55.000 21.34 4.93 39.11 3.11
3326 8524 0.242825 TAGCCGACAGTCGTCCTTTG 59.757 55.000 21.34 6.26 39.11 2.77
3327 8525 1.006571 GCCGACAGTCGTCCTTTGA 60.007 57.895 21.34 0.00 39.11 2.69
3328 8526 1.282930 GCCGACAGTCGTCCTTTGAC 61.283 60.000 21.34 0.00 39.11 3.18
3336 8534 4.892002 GTCCTTTGACGGTTGGGT 57.108 55.556 0.00 0.00 0.00 4.51
3337 8535 3.105187 GTCCTTTGACGGTTGGGTT 57.895 52.632 0.00 0.00 0.00 4.11
3338 8536 2.259266 GTCCTTTGACGGTTGGGTTA 57.741 50.000 0.00 0.00 0.00 2.85
3339 8537 1.875514 GTCCTTTGACGGTTGGGTTAC 59.124 52.381 0.00 0.00 0.00 2.50
3340 8538 1.770061 TCCTTTGACGGTTGGGTTACT 59.230 47.619 0.00 0.00 0.00 2.24
3341 8539 2.173143 TCCTTTGACGGTTGGGTTACTT 59.827 45.455 0.00 0.00 0.00 2.24
3342 8540 2.292292 CCTTTGACGGTTGGGTTACTTG 59.708 50.000 0.00 0.00 0.00 3.16
3343 8541 2.713863 TTGACGGTTGGGTTACTTGT 57.286 45.000 0.00 0.00 0.00 3.16
3344 8542 2.243602 TGACGGTTGGGTTACTTGTC 57.756 50.000 0.00 0.00 0.00 3.18
3345 8543 1.764134 TGACGGTTGGGTTACTTGTCT 59.236 47.619 0.00 0.00 0.00 3.41
3346 8544 2.140717 GACGGTTGGGTTACTTGTCTG 58.859 52.381 0.00 0.00 0.00 3.51
3347 8545 1.202722 ACGGTTGGGTTACTTGTCTGG 60.203 52.381 0.00 0.00 0.00 3.86
3348 8546 1.244816 GGTTGGGTTACTTGTCTGGC 58.755 55.000 0.00 0.00 0.00 4.85
3349 8547 0.872388 GTTGGGTTACTTGTCTGGCG 59.128 55.000 0.00 0.00 0.00 5.69
3350 8548 0.470766 TTGGGTTACTTGTCTGGCGT 59.529 50.000 0.00 0.00 0.00 5.68
3351 8549 0.250124 TGGGTTACTTGTCTGGCGTG 60.250 55.000 0.00 0.00 0.00 5.34
3352 8550 0.250166 GGGTTACTTGTCTGGCGTGT 60.250 55.000 0.00 0.00 0.00 4.49
3353 8551 0.865769 GGTTACTTGTCTGGCGTGTG 59.134 55.000 0.00 0.00 0.00 3.82
3354 8552 0.234884 GTTACTTGTCTGGCGTGTGC 59.765 55.000 0.00 0.00 41.71 4.57
3355 8553 0.179070 TTACTTGTCTGGCGTGTGCA 60.179 50.000 0.00 0.00 45.35 4.57
3356 8554 0.034756 TACTTGTCTGGCGTGTGCAT 59.965 50.000 0.00 0.00 45.35 3.96
3357 8555 1.208358 CTTGTCTGGCGTGTGCATG 59.792 57.895 0.00 0.00 45.35 4.06
3358 8556 2.191354 CTTGTCTGGCGTGTGCATGG 62.191 60.000 0.00 0.00 45.35 3.66
3359 8557 2.669569 GTCTGGCGTGTGCATGGT 60.670 61.111 0.00 0.00 45.35 3.55
3360 8558 2.112928 TCTGGCGTGTGCATGGTT 59.887 55.556 0.00 0.00 45.35 3.67
3361 8559 1.528076 TCTGGCGTGTGCATGGTTT 60.528 52.632 0.00 0.00 45.35 3.27
3362 8560 1.106351 TCTGGCGTGTGCATGGTTTT 61.106 50.000 0.00 0.00 45.35 2.43
3363 8561 0.249405 CTGGCGTGTGCATGGTTTTT 60.249 50.000 0.00 0.00 45.35 1.94
3364 8562 0.249238 TGGCGTGTGCATGGTTTTTC 60.249 50.000 0.00 0.00 45.35 2.29
3365 8563 0.249238 GGCGTGTGCATGGTTTTTCA 60.249 50.000 0.00 0.00 45.35 2.69
3366 8564 1.130955 GCGTGTGCATGGTTTTTCAG 58.869 50.000 0.00 0.00 42.15 3.02
3367 8565 1.535860 GCGTGTGCATGGTTTTTCAGT 60.536 47.619 0.00 0.00 42.15 3.41
3368 8566 2.808244 CGTGTGCATGGTTTTTCAGTT 58.192 42.857 0.00 0.00 0.00 3.16
3369 8567 2.788786 CGTGTGCATGGTTTTTCAGTTC 59.211 45.455 0.00 0.00 0.00 3.01
3370 8568 3.733380 CGTGTGCATGGTTTTTCAGTTCA 60.733 43.478 0.00 0.00 0.00 3.18
3371 8569 4.370917 GTGTGCATGGTTTTTCAGTTCAT 58.629 39.130 0.00 0.00 0.00 2.57
3372 8570 4.209703 GTGTGCATGGTTTTTCAGTTCATG 59.790 41.667 0.00 0.00 38.46 3.07
3373 8571 4.141981 TGTGCATGGTTTTTCAGTTCATGT 60.142 37.500 0.00 0.00 37.92 3.21
3374 8572 4.810491 GTGCATGGTTTTTCAGTTCATGTT 59.190 37.500 0.00 0.00 37.92 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.874129 ACCATAGTGAATCGGGGTGA 58.126 50.000 0.00 0.00 0.00 4.02
112 113 1.087202 TATCCATGTGTTGCGACCGC 61.087 55.000 7.53 7.53 42.35 5.68
261 1381 5.964958 TGAAATGTCCTGGATTTGACTTC 57.035 39.130 0.00 0.00 32.67 3.01
310 1430 9.265938 CTCATTTTGATTTGTACGTAGTTCATG 57.734 33.333 0.00 0.00 37.78 3.07
320 1440 8.236586 TGTAGATGCACTCATTTTGATTTGTAC 58.763 33.333 0.00 0.00 31.96 2.90
414 1536 5.954150 ACATTGCATCTACTCCTTCCATTTT 59.046 36.000 0.00 0.00 0.00 1.82
528 1651 4.559153 GTTGCATGACAAAACCTATGCTT 58.441 39.130 0.00 0.00 44.59 3.91
1173 3474 0.461961 GGAGAGAGGTTCATGGACCG 59.538 60.000 17.87 0.00 44.62 4.79
1187 3488 2.662006 TGAGAGCAATTCGTGGAGAG 57.338 50.000 0.00 0.00 0.00 3.20
1193 3494 5.295950 CCATTAGAGATGAGAGCAATTCGT 58.704 41.667 0.00 0.00 0.00 3.85
1195 3496 4.152045 CGCCATTAGAGATGAGAGCAATTC 59.848 45.833 0.00 0.00 0.00 2.17
1197 3498 3.661944 CGCCATTAGAGATGAGAGCAAT 58.338 45.455 0.00 0.00 0.00 3.56
1200 3501 1.427435 GCGCCATTAGAGATGAGAGC 58.573 55.000 0.00 0.00 0.00 4.09
1203 3517 1.612469 CGCGCGCCATTAGAGATGAG 61.612 60.000 27.72 1.87 0.00 2.90
1204 3518 1.661509 CGCGCGCCATTAGAGATGA 60.662 57.895 27.72 0.00 0.00 2.92
1223 3537 4.439974 GGTCAGCTTCACAAATGAAACACA 60.440 41.667 0.00 0.00 44.28 3.72
1226 3540 3.300009 CGGTCAGCTTCACAAATGAAAC 58.700 45.455 0.00 0.00 44.28 2.78
1228 3542 1.266718 GCGGTCAGCTTCACAAATGAA 59.733 47.619 0.00 0.00 42.66 2.57
1389 3706 0.757561 TGAGTGAACTGACGGGGTCA 60.758 55.000 0.00 0.00 40.50 4.02
1417 3734 6.924111 TCCTTGGAAAATCACAAGAATAAGC 58.076 36.000 6.02 0.00 45.22 3.09
1419 3736 7.039082 CCCTTCCTTGGAAAATCACAAGAATAA 60.039 37.037 6.02 0.00 45.22 1.40
1422 3739 4.588528 CCCTTCCTTGGAAAATCACAAGAA 59.411 41.667 6.02 0.00 45.22 2.52
1429 3746 0.817654 CGGCCCTTCCTTGGAAAATC 59.182 55.000 0.00 0.00 0.00 2.17
1430 3747 0.114364 ACGGCCCTTCCTTGGAAAAT 59.886 50.000 0.00 0.00 0.00 1.82
1432 3749 1.228429 CACGGCCCTTCCTTGGAAA 60.228 57.895 0.00 0.00 30.91 3.13
1433 3750 2.434331 CACGGCCCTTCCTTGGAA 59.566 61.111 0.00 1.86 30.91 3.53
1435 3760 2.672996 CACACGGCCCTTCCTTGG 60.673 66.667 0.00 0.00 38.34 3.61
1437 3762 1.774894 TAAGCACACGGCCCTTCCTT 61.775 55.000 0.00 0.00 46.50 3.36
1440 3765 0.605589 AAGTAAGCACACGGCCCTTC 60.606 55.000 0.00 0.00 46.50 3.46
1452 3779 4.259970 CGATCACACATGTAGCAAGTAAGC 60.260 45.833 0.00 0.00 0.00 3.09
1472 3821 1.338769 GGTACAAGGTCCTGCAACGAT 60.339 52.381 0.00 0.00 0.00 3.73
1511 3873 1.469251 GCCGCTCTGATCACGTTCTTA 60.469 52.381 0.00 0.00 0.00 2.10
1620 3982 1.373497 CGCTCCAGCAAGTCTCGTT 60.373 57.895 0.00 0.00 42.21 3.85
1628 3990 1.241990 ACTCGTAGTCGCTCCAGCAA 61.242 55.000 0.00 0.00 42.21 3.91
1683 4045 2.556189 GCAGAGCAGAATATCGAGAGGA 59.444 50.000 0.00 0.00 0.00 3.71
1689 4051 1.612469 CGCGGCAGAGCAGAATATCG 61.612 60.000 0.00 0.00 36.85 2.92
1694 4056 3.989787 TGACGCGGCAGAGCAGAA 61.990 61.111 12.71 0.00 36.85 3.02
1715 4096 4.825085 GGAACATTGGTAAGTTCAGGTCAA 59.175 41.667 7.49 0.00 44.46 3.18
1719 4100 3.758554 CCAGGAACATTGGTAAGTTCAGG 59.241 47.826 7.49 5.05 44.46 3.86
1734 4119 1.334869 CAAGTTCTGCACACCAGGAAC 59.665 52.381 6.22 6.22 42.05 3.62
1763 4150 2.112380 TCTCAGCCATCATTTTCGCA 57.888 45.000 0.00 0.00 0.00 5.10
1769 4341 1.813092 GCCGTGATCTCAGCCATCATT 60.813 52.381 0.00 0.00 32.86 2.57
1778 4350 2.748647 TCCGTCGCCGTGATCTCA 60.749 61.111 0.00 0.00 0.00 3.27
2108 4686 8.475331 ACAGGTTCAAATTATTGTACTACTCG 57.525 34.615 0.00 0.00 37.11 4.18
2186 4811 0.670546 CCATCGTCTTCGCACCTGTT 60.671 55.000 0.00 0.00 36.96 3.16
2371 5007 1.281925 CCCCTGTCCTGCCCTGTTAT 61.282 60.000 0.00 0.00 0.00 1.89
2493 5132 3.641437 TTACATGCCACACTTTGCTTC 57.359 42.857 0.00 0.00 0.00 3.86
2515 5154 9.581099 AAAATACTTGTTGTGGTTTTAGTTCTG 57.419 29.630 0.00 0.00 31.10 3.02
2542 5181 8.101419 ACAATAAATAAGACTCCTTCCGTTTCT 58.899 33.333 0.00 0.00 33.94 2.52
2544 5183 7.664318 ACACAATAAATAAGACTCCTTCCGTTT 59.336 33.333 0.00 0.00 33.94 3.60
2643 5502 8.306761 ACACATTTTTCTCTATTCATCCCAAAC 58.693 33.333 0.00 0.00 0.00 2.93
2730 5612 3.134081 TGGCCACCCAAACGAAAATAAAA 59.866 39.130 0.00 0.00 38.46 1.52
2785 5677 6.715280 ACCATCACTATCTCTGTCAAACATT 58.285 36.000 0.00 0.00 0.00 2.71
2809 7984 5.762711 TCTGCACTTTCATAACTGCAACTAA 59.237 36.000 0.00 0.00 39.10 2.24
2817 7992 4.829492 AGCCTTTTCTGCACTTTCATAACT 59.171 37.500 0.00 0.00 0.00 2.24
2826 8001 0.819259 TTGCGAGCCTTTTCTGCACT 60.819 50.000 0.00 0.00 34.90 4.40
2833 8008 1.620822 ATCTTGGTTGCGAGCCTTTT 58.379 45.000 0.00 0.00 0.00 2.27
2841 8016 4.033932 TGTCGATGATAAATCTTGGTTGCG 59.966 41.667 0.00 0.00 0.00 4.85
2844 8019 7.987458 AGTGTATGTCGATGATAAATCTTGGTT 59.013 33.333 0.00 0.00 0.00 3.67
2848 8045 8.820933 CACAAGTGTATGTCGATGATAAATCTT 58.179 33.333 0.00 0.00 0.00 2.40
2921 8119 5.707242 AGACGTTGAGAAGAGACAATACA 57.293 39.130 0.00 0.00 0.00 2.29
2940 8138 4.566987 ACTGTAAAAGGACCGATCAAGAC 58.433 43.478 0.00 0.00 0.00 3.01
2941 8139 4.884668 ACTGTAAAAGGACCGATCAAGA 57.115 40.909 0.00 0.00 0.00 3.02
2942 8140 5.475719 TGTACTGTAAAAGGACCGATCAAG 58.524 41.667 0.00 0.00 39.27 3.02
2949 8147 5.161943 ACCTGATGTACTGTAAAAGGACC 57.838 43.478 3.27 0.00 39.27 4.46
2950 8148 8.788325 ATTTACCTGATGTACTGTAAAAGGAC 57.212 34.615 3.27 0.00 40.62 3.85
2954 8152 9.621629 CCCATATTTACCTGATGTACTGTAAAA 57.378 33.333 0.00 0.00 0.00 1.52
2955 8153 7.717875 GCCCATATTTACCTGATGTACTGTAAA 59.282 37.037 0.00 0.00 0.00 2.01
2956 8154 7.221450 GCCCATATTTACCTGATGTACTGTAA 58.779 38.462 0.00 0.00 0.00 2.41
2957 8155 6.239772 GGCCCATATTTACCTGATGTACTGTA 60.240 42.308 0.00 0.00 0.00 2.74
2958 8156 5.456186 GGCCCATATTTACCTGATGTACTGT 60.456 44.000 0.00 0.00 0.00 3.55
2959 8157 5.003804 GGCCCATATTTACCTGATGTACTG 58.996 45.833 0.00 0.00 0.00 2.74
2960 8158 4.663120 TGGCCCATATTTACCTGATGTACT 59.337 41.667 0.00 0.00 0.00 2.73
2961 8159 4.980573 TGGCCCATATTTACCTGATGTAC 58.019 43.478 0.00 0.00 0.00 2.90
2962 8160 5.858876 ATGGCCCATATTTACCTGATGTA 57.141 39.130 0.00 0.00 0.00 2.29
2963 8161 4.747265 ATGGCCCATATTTACCTGATGT 57.253 40.909 0.00 0.00 0.00 3.06
2964 8162 7.722949 ATAAATGGCCCATATTTACCTGATG 57.277 36.000 0.00 0.00 34.04 3.07
2965 8163 8.740616 AAATAAATGGCCCATATTTACCTGAT 57.259 30.769 13.05 0.00 34.04 2.90
2966 8164 8.560124 AAAATAAATGGCCCATATTTACCTGA 57.440 30.769 14.36 0.00 34.04 3.86
2972 8170 9.865152 AAGCATAAAAATAAATGGCCCATATTT 57.135 25.926 0.00 6.00 32.20 1.40
2973 8171 9.287373 CAAGCATAAAAATAAATGGCCCATATT 57.713 29.630 0.00 0.00 0.00 1.28
2974 8172 7.884354 CCAAGCATAAAAATAAATGGCCCATAT 59.116 33.333 0.00 0.00 0.00 1.78
2975 8173 7.071698 TCCAAGCATAAAAATAAATGGCCCATA 59.928 33.333 0.00 0.00 0.00 2.74
2976 8174 6.063404 CCAAGCATAAAAATAAATGGCCCAT 58.937 36.000 0.00 0.00 0.00 4.00
2977 8175 5.190528 TCCAAGCATAAAAATAAATGGCCCA 59.809 36.000 0.00 0.00 0.00 5.36
2978 8176 5.527214 GTCCAAGCATAAAAATAAATGGCCC 59.473 40.000 0.00 0.00 0.00 5.80
2979 8177 5.234116 CGTCCAAGCATAAAAATAAATGGCC 59.766 40.000 0.00 0.00 0.00 5.36
2980 8178 5.234116 CCGTCCAAGCATAAAAATAAATGGC 59.766 40.000 0.00 0.00 0.00 4.40
2981 8179 5.234116 GCCGTCCAAGCATAAAAATAAATGG 59.766 40.000 0.00 0.00 0.00 3.16
2982 8180 5.234116 GGCCGTCCAAGCATAAAAATAAATG 59.766 40.000 0.00 0.00 0.00 2.32
2983 8181 5.356426 GGCCGTCCAAGCATAAAAATAAAT 58.644 37.500 0.00 0.00 0.00 1.40
2984 8182 4.382147 GGGCCGTCCAAGCATAAAAATAAA 60.382 41.667 0.00 0.00 35.00 1.40
2985 8183 3.131400 GGGCCGTCCAAGCATAAAAATAA 59.869 43.478 0.00 0.00 35.00 1.40
2986 8184 2.691011 GGGCCGTCCAAGCATAAAAATA 59.309 45.455 0.00 0.00 35.00 1.40
2987 8185 1.480545 GGGCCGTCCAAGCATAAAAAT 59.519 47.619 0.00 0.00 35.00 1.82
2988 8186 0.892063 GGGCCGTCCAAGCATAAAAA 59.108 50.000 0.00 0.00 35.00 1.94
2989 8187 0.251386 TGGGCCGTCCAAGCATAAAA 60.251 50.000 0.00 0.00 43.84 1.52
2990 8188 1.380689 TGGGCCGTCCAAGCATAAA 59.619 52.632 0.00 0.00 43.84 1.40
2991 8189 3.082470 TGGGCCGTCCAAGCATAA 58.918 55.556 0.00 0.00 43.84 1.90
2998 8196 2.994699 CCTTATGTGGGCCGTCCA 59.005 61.111 0.00 0.00 44.79 4.02
2999 8197 2.516225 GCCTTATGTGGGCCGTCC 60.516 66.667 0.00 0.00 43.49 4.79
3005 8203 5.189928 TGTTGTAGTATTGCCTTATGTGGG 58.810 41.667 0.00 0.00 0.00 4.61
3006 8204 6.112734 TCTGTTGTAGTATTGCCTTATGTGG 58.887 40.000 0.00 0.00 0.00 4.17
3007 8205 7.792374 ATCTGTTGTAGTATTGCCTTATGTG 57.208 36.000 0.00 0.00 0.00 3.21
3008 8206 8.807948 AAATCTGTTGTAGTATTGCCTTATGT 57.192 30.769 0.00 0.00 0.00 2.29
3011 8209 9.290988 TGAAAAATCTGTTGTAGTATTGCCTTA 57.709 29.630 0.00 0.00 0.00 2.69
3012 8210 8.177119 TGAAAAATCTGTTGTAGTATTGCCTT 57.823 30.769 0.00 0.00 0.00 4.35
3013 8211 7.448469 ACTGAAAAATCTGTTGTAGTATTGCCT 59.552 33.333 0.00 0.00 0.00 4.75
3014 8212 7.593825 ACTGAAAAATCTGTTGTAGTATTGCC 58.406 34.615 0.00 0.00 0.00 4.52
3015 8213 9.760660 CTACTGAAAAATCTGTTGTAGTATTGC 57.239 33.333 0.00 0.00 0.00 3.56
3031 8229 9.653287 CTGACCACAGAATATACTACTGAAAAA 57.347 33.333 0.00 0.00 46.03 1.94
3032 8230 7.764443 GCTGACCACAGAATATACTACTGAAAA 59.236 37.037 0.00 0.00 46.03 2.29
3033 8231 7.265673 GCTGACCACAGAATATACTACTGAAA 58.734 38.462 0.00 0.00 46.03 2.69
3034 8232 6.459710 CGCTGACCACAGAATATACTACTGAA 60.460 42.308 0.00 0.00 46.03 3.02
3035 8233 5.008712 CGCTGACCACAGAATATACTACTGA 59.991 44.000 0.00 0.00 46.03 3.41
3036 8234 5.215903 CGCTGACCACAGAATATACTACTG 58.784 45.833 0.00 0.00 46.03 2.74
3037 8235 4.278669 CCGCTGACCACAGAATATACTACT 59.721 45.833 0.00 0.00 46.03 2.57
3038 8236 4.547532 CCGCTGACCACAGAATATACTAC 58.452 47.826 0.00 0.00 46.03 2.73
3039 8237 3.005472 GCCGCTGACCACAGAATATACTA 59.995 47.826 0.00 0.00 46.03 1.82
3040 8238 2.224066 GCCGCTGACCACAGAATATACT 60.224 50.000 0.00 0.00 46.03 2.12
3041 8239 2.135933 GCCGCTGACCACAGAATATAC 58.864 52.381 0.00 0.00 46.03 1.47
3042 8240 1.760029 TGCCGCTGACCACAGAATATA 59.240 47.619 0.00 0.00 46.03 0.86
3043 8241 0.541392 TGCCGCTGACCACAGAATAT 59.459 50.000 0.00 0.00 46.03 1.28
3044 8242 0.541392 ATGCCGCTGACCACAGAATA 59.459 50.000 0.00 0.00 46.03 1.75
3045 8243 0.322816 AATGCCGCTGACCACAGAAT 60.323 50.000 0.00 0.00 46.03 2.40
3046 8244 0.537143 AAATGCCGCTGACCACAGAA 60.537 50.000 0.00 0.00 46.03 3.02
3047 8245 0.537143 AAAATGCCGCTGACCACAGA 60.537 50.000 0.00 0.00 46.03 3.41
3048 8246 0.314935 AAAAATGCCGCTGACCACAG 59.685 50.000 0.00 0.00 45.91 3.66
3049 8247 0.031857 CAAAAATGCCGCTGACCACA 59.968 50.000 0.00 0.00 0.00 4.17
3050 8248 0.667184 CCAAAAATGCCGCTGACCAC 60.667 55.000 0.00 0.00 0.00 4.16
3051 8249 1.112315 ACCAAAAATGCCGCTGACCA 61.112 50.000 0.00 0.00 0.00 4.02
3052 8250 0.885196 TACCAAAAATGCCGCTGACC 59.115 50.000 0.00 0.00 0.00 4.02
3053 8251 2.939460 ATACCAAAAATGCCGCTGAC 57.061 45.000 0.00 0.00 0.00 3.51
3054 8252 4.203226 TGATATACCAAAAATGCCGCTGA 58.797 39.130 0.00 0.00 0.00 4.26
3055 8253 4.566545 TGATATACCAAAAATGCCGCTG 57.433 40.909 0.00 0.00 0.00 5.18
3056 8254 5.068987 ACAATGATATACCAAAAATGCCGCT 59.931 36.000 0.00 0.00 0.00 5.52
3057 8255 5.288804 ACAATGATATACCAAAAATGCCGC 58.711 37.500 0.00 0.00 0.00 6.53
3058 8256 6.977502 TGAACAATGATATACCAAAAATGCCG 59.022 34.615 0.00 0.00 0.00 5.69
3059 8257 8.891671 ATGAACAATGATATACCAAAAATGCC 57.108 30.769 0.00 0.00 0.00 4.40
3060 8258 8.981647 GGATGAACAATGATATACCAAAAATGC 58.018 33.333 0.00 0.00 0.00 3.56
3065 8263 9.349713 GGTTAGGATGAACAATGATATACCAAA 57.650 33.333 0.00 0.00 0.00 3.28
3066 8264 7.659799 CGGTTAGGATGAACAATGATATACCAA 59.340 37.037 0.00 0.00 0.00 3.67
3067 8265 7.015779 TCGGTTAGGATGAACAATGATATACCA 59.984 37.037 0.00 0.00 0.00 3.25
3068 8266 7.383687 TCGGTTAGGATGAACAATGATATACC 58.616 38.462 0.00 0.00 0.00 2.73
3069 8267 8.827177 TTCGGTTAGGATGAACAATGATATAC 57.173 34.615 0.00 0.00 0.00 1.47
3070 8268 7.602644 GCTTCGGTTAGGATGAACAATGATATA 59.397 37.037 0.00 0.00 0.00 0.86
3071 8269 6.428159 GCTTCGGTTAGGATGAACAATGATAT 59.572 38.462 0.00 0.00 0.00 1.63
3072 8270 5.758296 GCTTCGGTTAGGATGAACAATGATA 59.242 40.000 0.00 0.00 0.00 2.15
3073 8271 4.576463 GCTTCGGTTAGGATGAACAATGAT 59.424 41.667 0.00 0.00 0.00 2.45
3074 8272 3.938963 GCTTCGGTTAGGATGAACAATGA 59.061 43.478 0.00 0.00 0.00 2.57
3075 8273 3.065371 GGCTTCGGTTAGGATGAACAATG 59.935 47.826 0.00 0.00 0.00 2.82
3076 8274 3.054361 AGGCTTCGGTTAGGATGAACAAT 60.054 43.478 0.00 0.00 0.00 2.71
3077 8275 2.304761 AGGCTTCGGTTAGGATGAACAA 59.695 45.455 0.00 0.00 0.00 2.83
3078 8276 1.906574 AGGCTTCGGTTAGGATGAACA 59.093 47.619 0.00 0.00 0.00 3.18
3079 8277 2.280628 CAGGCTTCGGTTAGGATGAAC 58.719 52.381 0.00 0.00 0.00 3.18
3080 8278 1.209504 CCAGGCTTCGGTTAGGATGAA 59.790 52.381 0.00 0.00 0.00 2.57
3081 8279 0.830648 CCAGGCTTCGGTTAGGATGA 59.169 55.000 0.00 0.00 0.00 2.92
3082 8280 0.179045 CCCAGGCTTCGGTTAGGATG 60.179 60.000 0.00 0.00 0.00 3.51
3083 8281 1.984288 GCCCAGGCTTCGGTTAGGAT 61.984 60.000 0.08 0.00 38.26 3.24
3084 8282 2.666098 GCCCAGGCTTCGGTTAGGA 61.666 63.158 0.08 0.00 38.26 2.94
3085 8283 2.124695 GCCCAGGCTTCGGTTAGG 60.125 66.667 0.08 0.00 38.26 2.69
3086 8284 0.815615 GATGCCCAGGCTTCGGTTAG 60.816 60.000 10.58 0.00 42.51 2.34
3087 8285 1.223487 GATGCCCAGGCTTCGGTTA 59.777 57.895 10.58 0.00 42.51 2.85
3088 8286 2.044946 GATGCCCAGGCTTCGGTT 60.045 61.111 10.58 0.00 42.51 4.44
3092 8290 3.512516 GTGCGATGCCCAGGCTTC 61.513 66.667 10.58 12.08 42.51 3.86
3096 8294 2.903855 GATGGTGCGATGCCCAGG 60.904 66.667 0.00 0.00 33.77 4.45
3097 8295 1.890979 GAGATGGTGCGATGCCCAG 60.891 63.158 0.00 0.00 33.77 4.45
3098 8296 2.190313 GAGATGGTGCGATGCCCA 59.810 61.111 0.00 2.28 34.50 5.36
3099 8297 2.592861 GGAGATGGTGCGATGCCC 60.593 66.667 0.00 0.00 0.00 5.36
3100 8298 1.442526 CTTGGAGATGGTGCGATGCC 61.443 60.000 0.00 0.00 0.00 4.40
3101 8299 1.442526 CCTTGGAGATGGTGCGATGC 61.443 60.000 0.00 0.00 0.00 3.91
3102 8300 1.442526 GCCTTGGAGATGGTGCGATG 61.443 60.000 0.00 0.00 0.00 3.84
3103 8301 1.153086 GCCTTGGAGATGGTGCGAT 60.153 57.895 0.00 0.00 0.00 4.58
3104 8302 2.268920 GCCTTGGAGATGGTGCGA 59.731 61.111 0.00 0.00 0.00 5.10
3105 8303 2.110967 CAGCCTTGGAGATGGTGCG 61.111 63.158 0.00 0.00 0.00 5.34
3106 8304 3.915575 CAGCCTTGGAGATGGTGC 58.084 61.111 0.00 0.00 0.00 5.01
3116 8314 1.135315 CGCGAAATGACCAGCCTTG 59.865 57.895 0.00 0.00 0.00 3.61
3117 8315 1.003839 TCGCGAAATGACCAGCCTT 60.004 52.632 6.20 0.00 0.00 4.35
3118 8316 1.741770 GTCGCGAAATGACCAGCCT 60.742 57.895 12.06 0.00 0.00 4.58
3119 8317 2.785258 GTCGCGAAATGACCAGCC 59.215 61.111 12.06 0.00 0.00 4.85
3120 8318 2.395690 CGTCGCGAAATGACCAGC 59.604 61.111 12.06 0.00 32.68 4.85
3121 8319 2.395690 GCGTCGCGAAATGACCAG 59.604 61.111 12.06 0.00 32.68 4.00
3122 8320 3.115892 GGCGTCGCGAAATGACCA 61.116 61.111 12.06 0.00 32.68 4.02
3123 8321 4.204891 CGGCGTCGCGAAATGACC 62.205 66.667 12.06 7.24 32.68 4.02
3138 8336 3.204119 TTGATGGCGAGCATGCGG 61.204 61.111 13.01 9.80 35.06 5.69
3139 8337 2.023741 GTTGATGGCGAGCATGCG 59.976 61.111 13.01 0.00 35.06 4.73
3140 8338 2.023741 CGTTGATGGCGAGCATGC 59.976 61.111 10.51 10.51 0.00 4.06
3141 8339 2.711311 CCGTTGATGGCGAGCATG 59.289 61.111 0.00 0.00 0.00 4.06
3142 8340 3.204827 GCCGTTGATGGCGAGCAT 61.205 61.111 0.00 0.00 46.75 3.79
3149 8347 2.310233 CGATAGCCGCCGTTGATGG 61.310 63.158 0.00 0.00 0.00 3.51
3150 8348 3.234390 CGATAGCCGCCGTTGATG 58.766 61.111 0.00 0.00 0.00 3.07
3162 8360 3.898627 CTAGTGCCGCCCGCGATAG 62.899 68.421 8.23 0.00 42.08 2.08
3163 8361 3.973516 CTAGTGCCGCCCGCGATA 61.974 66.667 8.23 0.00 42.08 2.92
3174 8372 2.938838 TCTCCTTCTAGGCTCTAGTGC 58.061 52.381 8.29 8.29 34.61 4.40
3175 8373 4.518970 GTCATCTCCTTCTAGGCTCTAGTG 59.481 50.000 0.00 0.00 34.61 2.74
3176 8374 4.725490 GTCATCTCCTTCTAGGCTCTAGT 58.275 47.826 0.00 0.00 34.61 2.57
3177 8375 3.751175 CGTCATCTCCTTCTAGGCTCTAG 59.249 52.174 0.00 3.55 34.61 2.43
3178 8376 3.391626 TCGTCATCTCCTTCTAGGCTCTA 59.608 47.826 0.00 0.00 34.61 2.43
3179 8377 2.173782 TCGTCATCTCCTTCTAGGCTCT 59.826 50.000 0.00 0.00 34.61 4.09
3180 8378 2.577700 TCGTCATCTCCTTCTAGGCTC 58.422 52.381 0.00 0.00 34.61 4.70
3181 8379 2.738587 TCGTCATCTCCTTCTAGGCT 57.261 50.000 0.00 0.00 34.61 4.58
3182 8380 2.691011 ACTTCGTCATCTCCTTCTAGGC 59.309 50.000 0.00 0.00 34.61 3.93
3183 8381 3.002862 CGACTTCGTCATCTCCTTCTAGG 59.997 52.174 0.00 0.00 32.44 3.02
3184 8382 3.872182 TCGACTTCGTCATCTCCTTCTAG 59.128 47.826 0.00 0.00 40.80 2.43
3185 8383 3.870274 TCGACTTCGTCATCTCCTTCTA 58.130 45.455 0.00 0.00 40.80 2.10
3186 8384 2.680841 CTCGACTTCGTCATCTCCTTCT 59.319 50.000 0.00 0.00 40.80 2.85
3187 8385 2.793237 GCTCGACTTCGTCATCTCCTTC 60.793 54.545 0.00 0.00 40.80 3.46
3188 8386 1.133407 GCTCGACTTCGTCATCTCCTT 59.867 52.381 0.00 0.00 40.80 3.36
3189 8387 0.736053 GCTCGACTTCGTCATCTCCT 59.264 55.000 0.00 0.00 40.80 3.69
3190 8388 0.248702 GGCTCGACTTCGTCATCTCC 60.249 60.000 0.00 0.00 40.80 3.71
3191 8389 0.590230 CGGCTCGACTTCGTCATCTC 60.590 60.000 0.00 0.00 40.80 2.75
3192 8390 1.306642 ACGGCTCGACTTCGTCATCT 61.307 55.000 0.00 0.00 40.80 2.90
3193 8391 0.376152 TACGGCTCGACTTCGTCATC 59.624 55.000 6.27 0.00 40.80 2.92
3194 8392 0.377554 CTACGGCTCGACTTCGTCAT 59.622 55.000 6.27 0.00 40.80 3.06
3195 8393 1.642037 CCTACGGCTCGACTTCGTCA 61.642 60.000 6.27 0.00 40.80 4.35
3196 8394 1.062206 CCTACGGCTCGACTTCGTC 59.938 63.158 6.27 0.00 40.80 4.20
3197 8395 1.642952 GACCTACGGCTCGACTTCGT 61.643 60.000 7.82 7.82 40.80 3.85
3198 8396 1.062206 GACCTACGGCTCGACTTCG 59.938 63.158 1.50 0.00 41.45 3.79
3199 8397 0.099082 CAGACCTACGGCTCGACTTC 59.901 60.000 1.50 0.00 0.00 3.01
3200 8398 0.608582 ACAGACCTACGGCTCGACTT 60.609 55.000 1.50 0.00 0.00 3.01
3201 8399 1.002379 ACAGACCTACGGCTCGACT 60.002 57.895 1.50 0.00 0.00 4.18
3202 8400 1.025647 AGACAGACCTACGGCTCGAC 61.026 60.000 1.50 0.00 0.00 4.20
3203 8401 1.025113 CAGACAGACCTACGGCTCGA 61.025 60.000 1.50 0.00 0.00 4.04
3204 8402 1.306642 ACAGACAGACCTACGGCTCG 61.307 60.000 0.00 0.00 0.00 5.03
3205 8403 0.889306 AACAGACAGACCTACGGCTC 59.111 55.000 0.00 0.00 0.00 4.70
3206 8404 0.603569 CAACAGACAGACCTACGGCT 59.396 55.000 0.00 0.00 0.00 5.52
3207 8405 0.317479 ACAACAGACAGACCTACGGC 59.683 55.000 0.00 0.00 0.00 5.68
3208 8406 1.067776 GGACAACAGACAGACCTACGG 60.068 57.143 0.00 0.00 0.00 4.02
3209 8407 1.611977 TGGACAACAGACAGACCTACG 59.388 52.381 0.00 0.00 0.00 3.51
3210 8408 2.607282 CGTGGACAACAGACAGACCTAC 60.607 54.545 0.00 0.00 0.00 3.18
3211 8409 1.611977 CGTGGACAACAGACAGACCTA 59.388 52.381 0.00 0.00 0.00 3.08
3212 8410 0.389391 CGTGGACAACAGACAGACCT 59.611 55.000 0.00 0.00 0.00 3.85
3213 8411 1.222115 GCGTGGACAACAGACAGACC 61.222 60.000 0.00 0.00 0.00 3.85
3214 8412 1.222115 GGCGTGGACAACAGACAGAC 61.222 60.000 0.00 0.00 0.00 3.51
3215 8413 1.069090 GGCGTGGACAACAGACAGA 59.931 57.895 0.00 0.00 0.00 3.41
3216 8414 0.603707 ATGGCGTGGACAACAGACAG 60.604 55.000 0.00 0.00 0.00 3.51
3217 8415 0.682292 TATGGCGTGGACAACAGACA 59.318 50.000 0.00 0.00 0.00 3.41
3218 8416 1.359848 CTATGGCGTGGACAACAGAC 58.640 55.000 0.00 0.00 0.00 3.51
3219 8417 0.249120 CCTATGGCGTGGACAACAGA 59.751 55.000 0.00 0.00 0.00 3.41
3220 8418 1.369091 GCCTATGGCGTGGACAACAG 61.369 60.000 0.00 0.00 39.62 3.16
3221 8419 1.376683 GCCTATGGCGTGGACAACA 60.377 57.895 0.00 0.00 39.62 3.33
3222 8420 3.497879 GCCTATGGCGTGGACAAC 58.502 61.111 0.00 0.00 39.62 3.32
3239 8437 2.156446 CGGCGTACAGTAGGCAACG 61.156 63.158 23.29 15.79 46.39 4.10
3240 8438 1.080298 ACGGCGTACAGTAGGCAAC 60.080 57.895 23.29 8.97 41.07 4.17
3241 8439 1.080366 CACGGCGTACAGTAGGCAA 60.080 57.895 23.29 0.00 41.07 4.52
3242 8440 2.569657 CACGGCGTACAGTAGGCA 59.430 61.111 23.29 0.00 41.07 4.75
3243 8441 2.202703 CCACGGCGTACAGTAGGC 60.203 66.667 14.22 15.65 38.75 3.93
3244 8442 0.037975 AAACCACGGCGTACAGTAGG 60.038 55.000 14.22 11.64 0.00 3.18
3245 8443 1.458064 CAAAACCACGGCGTACAGTAG 59.542 52.381 14.22 0.00 0.00 2.57
3246 8444 1.202510 ACAAAACCACGGCGTACAGTA 60.203 47.619 14.22 0.00 0.00 2.74
3247 8445 0.462403 ACAAAACCACGGCGTACAGT 60.462 50.000 14.22 8.08 0.00 3.55
3248 8446 1.500108 TACAAAACCACGGCGTACAG 58.500 50.000 14.22 7.34 0.00 2.74
3249 8447 1.799403 CATACAAAACCACGGCGTACA 59.201 47.619 14.22 0.00 0.00 2.90
3250 8448 1.464521 GCATACAAAACCACGGCGTAC 60.465 52.381 14.22 0.00 0.00 3.67
3251 8449 0.797542 GCATACAAAACCACGGCGTA 59.202 50.000 14.22 0.00 0.00 4.42
3252 8450 1.577421 GCATACAAAACCACGGCGT 59.423 52.632 6.77 6.77 0.00 5.68
3253 8451 1.154112 GGCATACAAAACCACGGCG 60.154 57.895 4.80 4.80 0.00 6.46
3254 8452 1.154112 CGGCATACAAAACCACGGC 60.154 57.895 0.00 0.00 0.00 5.68
3255 8453 1.154112 GCGGCATACAAAACCACGG 60.154 57.895 0.00 0.00 0.00 4.94
3256 8454 1.154112 GGCGGCATACAAAACCACG 60.154 57.895 3.07 0.00 0.00 4.94
3257 8455 1.154112 CGGCGGCATACAAAACCAC 60.154 57.895 10.53 0.00 0.00 4.16
3258 8456 1.579084 GACGGCGGCATACAAAACCA 61.579 55.000 8.47 0.00 0.00 3.67
3259 8457 1.135939 GACGGCGGCATACAAAACC 59.864 57.895 8.47 0.00 0.00 3.27
3260 8458 1.225908 CGACGGCGGCATACAAAAC 60.226 57.895 15.54 0.00 0.00 2.43
3261 8459 3.170127 CGACGGCGGCATACAAAA 58.830 55.556 15.54 0.00 0.00 2.44
3287 8485 4.541648 ATAGGAGGGGGCGACGCT 62.542 66.667 20.77 0.00 46.25 5.07
3288 8486 3.992317 GATAGGAGGGGGCGACGC 61.992 72.222 12.43 12.43 43.79 5.19
3289 8487 2.421923 TAGGATAGGAGGGGGCGACG 62.422 65.000 0.00 0.00 0.00 5.12
3290 8488 0.612453 CTAGGATAGGAGGGGGCGAC 60.612 65.000 0.00 0.00 34.22 5.19
3291 8489 1.774966 CTAGGATAGGAGGGGGCGA 59.225 63.158 0.00 0.00 34.22 5.54
3292 8490 1.985116 GCTAGGATAGGAGGGGGCG 60.985 68.421 0.00 0.00 39.70 6.13
3293 8491 1.613928 GGCTAGGATAGGAGGGGGC 60.614 68.421 0.00 0.00 39.70 5.80
3294 8492 1.305381 CGGCTAGGATAGGAGGGGG 60.305 68.421 0.00 0.00 39.70 5.40
3295 8493 0.612453 GTCGGCTAGGATAGGAGGGG 60.612 65.000 0.00 0.00 39.70 4.79
3296 8494 0.112606 TGTCGGCTAGGATAGGAGGG 59.887 60.000 0.00 0.00 39.70 4.30
3297 8495 1.202952 ACTGTCGGCTAGGATAGGAGG 60.203 57.143 0.00 0.00 39.70 4.30
3298 8496 2.156098 GACTGTCGGCTAGGATAGGAG 58.844 57.143 0.00 0.00 39.70 3.69
3299 8497 1.542767 CGACTGTCGGCTAGGATAGGA 60.543 57.143 21.78 0.00 39.70 2.94
3300 8498 0.875728 CGACTGTCGGCTAGGATAGG 59.124 60.000 21.78 0.00 39.70 2.57
3301 8499 1.532007 GACGACTGTCGGCTAGGATAG 59.468 57.143 30.81 3.07 46.20 2.08
3302 8500 1.590932 GACGACTGTCGGCTAGGATA 58.409 55.000 30.81 0.00 46.20 2.59
3303 8501 2.406205 GACGACTGTCGGCTAGGAT 58.594 57.895 30.81 10.79 46.20 3.24
3304 8502 3.900855 GACGACTGTCGGCTAGGA 58.099 61.111 30.81 0.00 46.20 2.94
3310 8508 2.810486 GTCAAAGGACGACTGTCGG 58.190 57.895 30.81 14.17 46.49 4.79
3319 8517 1.875514 GTAACCCAACCGTCAAAGGAC 59.124 52.381 0.00 0.00 40.77 3.85
3320 8518 1.770061 AGTAACCCAACCGTCAAAGGA 59.230 47.619 0.00 0.00 34.73 3.36
3321 8519 2.265589 AGTAACCCAACCGTCAAAGG 57.734 50.000 0.00 0.00 37.30 3.11
3322 8520 2.946990 ACAAGTAACCCAACCGTCAAAG 59.053 45.455 0.00 0.00 0.00 2.77
3323 8521 2.944349 GACAAGTAACCCAACCGTCAAA 59.056 45.455 0.00 0.00 0.00 2.69
3324 8522 2.171027 AGACAAGTAACCCAACCGTCAA 59.829 45.455 0.00 0.00 0.00 3.18
3325 8523 1.764134 AGACAAGTAACCCAACCGTCA 59.236 47.619 0.00 0.00 0.00 4.35
3326 8524 2.140717 CAGACAAGTAACCCAACCGTC 58.859 52.381 0.00 0.00 0.00 4.79
3327 8525 1.202722 CCAGACAAGTAACCCAACCGT 60.203 52.381 0.00 0.00 0.00 4.83
3328 8526 1.519408 CCAGACAAGTAACCCAACCG 58.481 55.000 0.00 0.00 0.00 4.44
3329 8527 1.244816 GCCAGACAAGTAACCCAACC 58.755 55.000 0.00 0.00 0.00 3.77
3330 8528 0.872388 CGCCAGACAAGTAACCCAAC 59.128 55.000 0.00 0.00 0.00 3.77
3331 8529 0.470766 ACGCCAGACAAGTAACCCAA 59.529 50.000 0.00 0.00 0.00 4.12
3332 8530 0.250124 CACGCCAGACAAGTAACCCA 60.250 55.000 0.00 0.00 0.00 4.51
3333 8531 0.250166 ACACGCCAGACAAGTAACCC 60.250 55.000 0.00 0.00 0.00 4.11
3334 8532 0.865769 CACACGCCAGACAAGTAACC 59.134 55.000 0.00 0.00 0.00 2.85
3335 8533 0.234884 GCACACGCCAGACAAGTAAC 59.765 55.000 0.00 0.00 0.00 2.50
3336 8534 0.179070 TGCACACGCCAGACAAGTAA 60.179 50.000 0.00 0.00 37.32 2.24
3337 8535 0.034756 ATGCACACGCCAGACAAGTA 59.965 50.000 0.00 0.00 37.32 2.24
3338 8536 1.227943 ATGCACACGCCAGACAAGT 60.228 52.632 0.00 0.00 37.32 3.16
3339 8537 1.208358 CATGCACACGCCAGACAAG 59.792 57.895 0.00 0.00 37.32 3.16
3340 8538 2.260154 CCATGCACACGCCAGACAA 61.260 57.895 0.00 0.00 37.32 3.18
3341 8539 2.669229 CCATGCACACGCCAGACA 60.669 61.111 0.00 0.00 37.32 3.41
3342 8540 1.795170 AAACCATGCACACGCCAGAC 61.795 55.000 0.00 0.00 37.32 3.51
3343 8541 1.106351 AAAACCATGCACACGCCAGA 61.106 50.000 0.00 0.00 37.32 3.86
3344 8542 0.249405 AAAAACCATGCACACGCCAG 60.249 50.000 0.00 0.00 37.32 4.85
3345 8543 0.249238 GAAAAACCATGCACACGCCA 60.249 50.000 0.00 0.00 37.32 5.69
3346 8544 0.249238 TGAAAAACCATGCACACGCC 60.249 50.000 0.00 0.00 37.32 5.68
3347 8545 1.130955 CTGAAAAACCATGCACACGC 58.869 50.000 0.00 0.00 39.24 5.34
3348 8546 2.490328 ACTGAAAAACCATGCACACG 57.510 45.000 0.00 0.00 0.00 4.49
3349 8547 3.779759 TGAACTGAAAAACCATGCACAC 58.220 40.909 0.00 0.00 0.00 3.82
3350 8548 4.141981 ACATGAACTGAAAAACCATGCACA 60.142 37.500 0.00 0.00 38.43 4.57
3351 8549 4.370917 ACATGAACTGAAAAACCATGCAC 58.629 39.130 0.00 0.00 38.43 4.57
3352 8550 4.669206 ACATGAACTGAAAAACCATGCA 57.331 36.364 0.00 0.00 38.43 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.