Multiple sequence alignment - TraesCS6D01G364900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G364900 chr6D 100.000 6225 0 0 982 7206 454480146 454486370 0.000000e+00 11496.0
1 TraesCS6D01G364900 chr6D 100.000 568 0 0 1 568 454479165 454479732 0.000000e+00 1050.0
2 TraesCS6D01G364900 chr6D 75.901 527 95 22 1815 2335 454491902 454492402 2.600000e-59 241.0
3 TraesCS6D01G364900 chr6B 94.016 3877 162 38 2685 6539 690957140 690960968 0.000000e+00 5810.0
4 TraesCS6D01G364900 chr6B 92.575 1697 79 28 983 2642 690955453 690957139 0.000000e+00 2392.0
5 TraesCS6D01G364900 chr6B 92.771 332 21 3 1802 2130 558489374 558489705 1.820000e-130 477.0
6 TraesCS6D01G364900 chr6B 81.054 607 59 22 6600 7206 690961119 690961669 3.990000e-117 433.0
7 TraesCS6D01G364900 chr6B 81.875 320 19 16 169 479 690954788 690955077 4.350000e-57 233.0
8 TraesCS6D01G364900 chr6B 85.294 68 4 3 109 171 211160479 211160545 1.680000e-06 65.8
9 TraesCS6D01G364900 chr6A 93.388 3675 205 24 1818 5468 600671852 600675512 0.000000e+00 5406.0
10 TraesCS6D01G364900 chr6A 87.877 1361 107 32 5471 6803 600675559 600676889 0.000000e+00 1546.0
11 TraesCS6D01G364900 chr6A 89.479 960 49 26 982 1899 600670863 600671812 0.000000e+00 1166.0
12 TraesCS6D01G364900 chr6A 88.934 244 8 8 308 547 600670247 600670475 4.260000e-72 283.0
13 TraesCS6D01G364900 chr6A 82.231 242 35 8 2024 2263 600701478 600701713 1.230000e-47 202.0
14 TraesCS6D01G364900 chr6A 88.000 100 10 2 7108 7206 600693329 600693427 4.570000e-22 117.0
15 TraesCS6D01G364900 chr6A 95.122 41 2 0 8 48 600670056 600670096 1.680000e-06 65.8
16 TraesCS6D01G364900 chr1A 81.534 352 37 8 1149 1475 490515417 490515765 1.540000e-66 265.0
17 TraesCS6D01G364900 chr1A 81.250 80 9 5 135 210 537555813 537555890 7.810000e-05 60.2
18 TraesCS6D01G364900 chr3B 81.341 343 36 18 1149 1475 512424136 512424466 3.340000e-63 254.0
19 TraesCS6D01G364900 chr3B 86.667 75 7 2 7126 7197 665464502 665464576 5.990000e-11 80.5
20 TraesCS6D01G364900 chr3B 92.308 52 0 1 124 171 739857050 739856999 3.610000e-08 71.3
21 TraesCS6D01G364900 chr3B 91.111 45 3 1 18 61 61682385 61682429 7.810000e-05 60.2
22 TraesCS6D01G364900 chr4B 81.188 303 32 17 1192 1478 577220405 577220112 3.380000e-53 220.0
23 TraesCS6D01G364900 chr4B 97.826 46 1 0 125 170 605570583 605570538 5.990000e-11 80.5
24 TraesCS6D01G364900 chr4B 95.833 48 2 0 124 171 460031731 460031684 2.160000e-10 78.7
25 TraesCS6D01G364900 chr4B 92.727 55 2 2 120 174 496423417 496423365 2.160000e-10 78.7
26 TraesCS6D01G364900 chr3D 81.646 158 19 8 1262 1419 447558880 447558733 9.820000e-24 122.0
27 TraesCS6D01G364900 chr3D 88.889 72 4 4 7126 7196 504054980 504055048 1.290000e-12 86.1
28 TraesCS6D01G364900 chr3D 86.207 58 6 2 6 61 38916867 38916924 2.170000e-05 62.1
29 TraesCS6D01G364900 chr1D 81.646 158 19 8 1262 1419 477424113 477423966 9.820000e-24 122.0
30 TraesCS6D01G364900 chr1D 100.000 45 0 0 4 48 388026130 388026086 4.630000e-12 84.2
31 TraesCS6D01G364900 chr7A 85.714 91 12 1 1386 1475 7713361 7713451 2.140000e-15 95.3
32 TraesCS6D01G364900 chr5B 91.667 60 3 2 113 170 457724189 457724130 1.670000e-11 82.4
33 TraesCS6D01G364900 chr7B 92.857 56 2 1 117 170 745260571 745260626 5.990000e-11 80.5
34 TraesCS6D01G364900 chr1B 97.778 45 1 0 126 170 683996034 683995990 2.160000e-10 78.7
35 TraesCS6D01G364900 chr1B 100.000 28 0 0 21 48 388166813 388166840 1.300000e-02 52.8
36 TraesCS6D01G364900 chr3A 100.000 31 0 0 18 48 660192859 660192829 2.810000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G364900 chr6D 454479165 454486370 7205 False 6273.00 11496 100.000 1 7206 2 chr6D.!!$F2 7205
1 TraesCS6D01G364900 chr6D 454491902 454492402 500 False 241.00 241 75.901 1815 2335 1 chr6D.!!$F1 520
2 TraesCS6D01G364900 chr6B 690954788 690961669 6881 False 2217.00 5810 87.380 169 7206 4 chr6B.!!$F3 7037
3 TraesCS6D01G364900 chr6A 600670056 600676889 6833 False 1693.36 5406 90.960 8 6803 5 chr6A.!!$F3 6795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 124 0.034059 CTGTCGAGGCTTTCACACCT 59.966 55.000 0.0 0.0 39.65 4.00 F
542 562 0.043940 CCCCCATTCCAATCCCCAAA 59.956 55.000 0.0 0.0 0.00 3.28 F
1542 1937 0.249031 GGTTGTTGAGCCTTGTGTGC 60.249 55.000 0.0 0.0 0.00 4.57 F
2202 2780 0.610687 AGACCAGCTACTTCACCTGC 59.389 55.000 0.0 0.0 0.00 4.85 F
3440 4025 1.067516 CCAAAACAGAGGTGTGGCTTG 59.932 52.381 0.0 0.0 36.84 4.01 F
3652 4237 2.026822 TGATGAGCCTCTTGGAAAGGAC 60.027 50.000 0.0 0.0 46.24 3.85 F
5233 5828 1.419762 TGTGTGACCATGCTGTACCTT 59.580 47.619 0.0 0.0 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1498 1893 0.324645 AAATGCAAAGCCGGGGATCT 60.325 50.000 2.18 0.0 0.00 2.75 R
1949 2497 0.890683 CTTTGCCAACCAGATCCACC 59.109 55.000 0.00 0.0 0.00 4.61 R
2535 3114 2.123338 AGTTTGGCCTTGGCTGCA 60.123 55.556 11.71 0.0 0.00 4.41 R
3603 4188 1.902508 CTTCCTCTACAGGTTCTGCCA 59.097 52.381 0.00 0.0 41.28 4.92 R
4405 4990 0.110486 GAGCTCCCCAAAGGAACACA 59.890 55.000 0.87 0.0 46.94 3.72 R
5646 6289 0.318614 AACGGCCTGCAAAAACATCG 60.319 50.000 0.00 0.0 0.00 3.84 R
7092 7856 0.248539 GTCCTCGTACATCAGACCGC 60.249 60.000 0.00 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 5.560966 CGCCAATTAGGAGCTTCTAAAAA 57.439 39.130 18.47 0.00 41.22 1.94
56 57 5.573146 CGCCAATTAGGAGCTTCTAAAAAG 58.427 41.667 18.47 10.54 41.22 2.27
57 58 5.354234 CGCCAATTAGGAGCTTCTAAAAAGA 59.646 40.000 18.47 0.00 41.22 2.52
58 59 6.128007 CGCCAATTAGGAGCTTCTAAAAAGAA 60.128 38.462 18.47 0.00 41.22 2.52
59 60 7.574967 CGCCAATTAGGAGCTTCTAAAAAGAAA 60.575 37.037 18.47 0.00 41.22 2.52
60 61 7.757173 GCCAATTAGGAGCTTCTAAAAAGAAAG 59.243 37.037 18.47 5.07 41.22 2.62
61 62 8.246871 CCAATTAGGAGCTTCTAAAAAGAAAGG 58.753 37.037 18.47 8.77 41.22 3.11
62 63 9.014297 CAATTAGGAGCTTCTAAAAAGAAAGGA 57.986 33.333 18.47 0.00 33.54 3.36
63 64 8.800370 ATTAGGAGCTTCTAAAAAGAAAGGAG 57.200 34.615 18.47 0.00 33.54 3.69
64 65 5.007034 AGGAGCTTCTAAAAAGAAAGGAGC 58.993 41.667 0.00 0.00 43.57 4.70
75 76 3.549898 AGAAAGGAGCTCCCCATTTTT 57.450 42.857 29.54 21.42 36.42 1.94
96 97 5.432885 TTTCACATCCTCCTTTCGTTTTC 57.567 39.130 0.00 0.00 0.00 2.29
97 98 4.351874 TCACATCCTCCTTTCGTTTTCT 57.648 40.909 0.00 0.00 0.00 2.52
118 122 1.795286 CTTCTGTCGAGGCTTTCACAC 59.205 52.381 0.00 0.00 0.00 3.82
120 124 0.034059 CTGTCGAGGCTTTCACACCT 59.966 55.000 0.00 0.00 39.65 4.00
123 127 2.301870 TGTCGAGGCTTTCACACCTATT 59.698 45.455 0.00 0.00 36.05 1.73
124 128 2.930682 GTCGAGGCTTTCACACCTATTC 59.069 50.000 0.00 0.00 36.05 1.75
125 129 2.093658 TCGAGGCTTTCACACCTATTCC 60.094 50.000 0.00 0.00 36.05 3.01
126 130 2.644676 GAGGCTTTCACACCTATTCCC 58.355 52.381 0.00 0.00 36.05 3.97
127 131 2.239907 GAGGCTTTCACACCTATTCCCT 59.760 50.000 0.00 0.00 36.05 4.20
128 132 2.239907 AGGCTTTCACACCTATTCCCTC 59.760 50.000 0.00 0.00 33.38 4.30
129 133 2.644676 GCTTTCACACCTATTCCCTCC 58.355 52.381 0.00 0.00 0.00 4.30
130 134 2.906354 CTTTCACACCTATTCCCTCCG 58.094 52.381 0.00 0.00 0.00 4.63
131 135 1.946984 TTCACACCTATTCCCTCCGT 58.053 50.000 0.00 0.00 0.00 4.69
132 136 1.946984 TCACACCTATTCCCTCCGTT 58.053 50.000 0.00 0.00 0.00 4.44
133 137 1.829222 TCACACCTATTCCCTCCGTTC 59.171 52.381 0.00 0.00 0.00 3.95
134 138 1.134491 CACACCTATTCCCTCCGTTCC 60.134 57.143 0.00 0.00 0.00 3.62
135 139 1.200519 CACCTATTCCCTCCGTTCCA 58.799 55.000 0.00 0.00 0.00 3.53
136 140 1.557832 CACCTATTCCCTCCGTTCCAA 59.442 52.381 0.00 0.00 0.00 3.53
137 141 2.026636 CACCTATTCCCTCCGTTCCAAA 60.027 50.000 0.00 0.00 0.00 3.28
138 142 2.645797 ACCTATTCCCTCCGTTCCAAAA 59.354 45.455 0.00 0.00 0.00 2.44
139 143 3.268595 ACCTATTCCCTCCGTTCCAAAAT 59.731 43.478 0.00 0.00 0.00 1.82
140 144 4.475747 ACCTATTCCCTCCGTTCCAAAATA 59.524 41.667 0.00 0.00 0.00 1.40
141 145 5.063880 CCTATTCCCTCCGTTCCAAAATAG 58.936 45.833 0.00 0.00 0.00 1.73
142 146 3.359695 TTCCCTCCGTTCCAAAATAGG 57.640 47.619 0.00 0.00 0.00 2.57
143 147 1.562475 TCCCTCCGTTCCAAAATAGGG 59.438 52.381 0.00 0.00 44.29 3.53
144 148 1.283905 CCCTCCGTTCCAAAATAGGGT 59.716 52.381 0.00 0.00 39.11 4.34
145 149 2.640184 CCTCCGTTCCAAAATAGGGTC 58.360 52.381 0.00 0.00 0.00 4.46
146 150 2.026636 CCTCCGTTCCAAAATAGGGTCA 60.027 50.000 0.00 0.00 0.00 4.02
147 151 3.371595 CCTCCGTTCCAAAATAGGGTCAT 60.372 47.826 0.00 0.00 0.00 3.06
148 152 3.877508 CTCCGTTCCAAAATAGGGTCATC 59.122 47.826 0.00 0.00 0.00 2.92
149 153 3.521937 TCCGTTCCAAAATAGGGTCATCT 59.478 43.478 0.00 0.00 0.00 2.90
150 154 4.717778 TCCGTTCCAAAATAGGGTCATCTA 59.282 41.667 0.00 0.00 0.00 1.98
151 155 5.368523 TCCGTTCCAAAATAGGGTCATCTAT 59.631 40.000 0.00 0.00 0.00 1.98
152 156 6.062095 CCGTTCCAAAATAGGGTCATCTATT 58.938 40.000 0.00 0.00 40.50 1.73
153 157 6.546034 CCGTTCCAAAATAGGGTCATCTATTT 59.454 38.462 4.57 4.57 46.13 1.40
160 164 7.568199 AAATAGGGTCATCTATTTTGGAACG 57.432 36.000 4.57 0.00 43.46 3.95
161 165 3.886123 AGGGTCATCTATTTTGGAACGG 58.114 45.455 0.00 0.00 0.00 4.44
162 166 3.521937 AGGGTCATCTATTTTGGAACGGA 59.478 43.478 0.00 0.00 0.00 4.69
163 167 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
164 168 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
165 169 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
166 170 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
167 171 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
168 172 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
169 173 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
170 174 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
171 175 3.343941 TTTTGGAACGGAGGGAGTATG 57.656 47.619 0.00 0.00 0.00 2.39
172 176 1.946984 TTGGAACGGAGGGAGTATGT 58.053 50.000 0.00 0.00 0.00 2.29
200 204 2.887152 ACAATGCTTTCACACCCTTCTC 59.113 45.455 0.00 0.00 0.00 2.87
259 269 0.839946 ACCCTGCTCTGTTTCACACT 59.160 50.000 0.00 0.00 0.00 3.55
261 271 1.475751 CCCTGCTCTGTTTCACACTGT 60.476 52.381 0.00 0.00 0.00 3.55
266 276 2.905075 CTCTGTTTCACACTGTGGTGA 58.095 47.619 13.09 10.32 45.61 4.02
320 334 2.258591 CAGACAGGGACGACACGG 59.741 66.667 0.00 0.00 0.00 4.94
345 359 4.636435 CGGACACCCACACCCACC 62.636 72.222 0.00 0.00 0.00 4.61
346 360 3.494254 GGACACCCACACCCACCA 61.494 66.667 0.00 0.00 0.00 4.17
347 361 2.203294 GACACCCACACCCACCAC 60.203 66.667 0.00 0.00 0.00 4.16
348 362 3.018193 ACACCCACACCCACCACA 61.018 61.111 0.00 0.00 0.00 4.17
349 363 2.518349 CACCCACACCCACCACAC 60.518 66.667 0.00 0.00 0.00 3.82
351 365 3.867783 CCCACACCCACCACACGA 61.868 66.667 0.00 0.00 0.00 4.35
353 367 2.184167 CCACACCCACCACACGAAC 61.184 63.158 0.00 0.00 0.00 3.95
355 369 1.153249 ACACCCACCACACGAACAG 60.153 57.895 0.00 0.00 0.00 3.16
357 371 0.105224 CACCCACCACACGAACAGTA 59.895 55.000 0.00 0.00 0.00 2.74
358 372 0.831966 ACCCACCACACGAACAGTAA 59.168 50.000 0.00 0.00 0.00 2.24
359 373 1.223187 CCCACCACACGAACAGTAAC 58.777 55.000 0.00 0.00 0.00 2.50
360 374 1.473610 CCCACCACACGAACAGTAACA 60.474 52.381 0.00 0.00 0.00 2.41
361 375 2.281517 CCACCACACGAACAGTAACAA 58.718 47.619 0.00 0.00 0.00 2.83
362 376 2.678836 CCACCACACGAACAGTAACAAA 59.321 45.455 0.00 0.00 0.00 2.83
363 377 3.127203 CCACCACACGAACAGTAACAAAA 59.873 43.478 0.00 0.00 0.00 2.44
364 378 4.201970 CCACCACACGAACAGTAACAAAAT 60.202 41.667 0.00 0.00 0.00 1.82
365 379 5.336744 CACCACACGAACAGTAACAAAATT 58.663 37.500 0.00 0.00 0.00 1.82
366 380 5.454232 CACCACACGAACAGTAACAAAATTC 59.546 40.000 0.00 0.00 0.00 2.17
367 381 5.124138 ACCACACGAACAGTAACAAAATTCA 59.876 36.000 0.00 0.00 0.00 2.57
539 559 1.075301 CACCCCCATTCCAATCCCC 60.075 63.158 0.00 0.00 0.00 4.81
541 561 1.158963 ACCCCCATTCCAATCCCCAA 61.159 55.000 0.00 0.00 0.00 4.12
542 562 0.043940 CCCCCATTCCAATCCCCAAA 59.956 55.000 0.00 0.00 0.00 3.28
1291 1677 3.336568 TCGGGGAGGAGGACGAGT 61.337 66.667 0.00 0.00 0.00 4.18
1542 1937 0.249031 GGTTGTTGAGCCTTGTGTGC 60.249 55.000 0.00 0.00 0.00 4.57
1662 2057 4.436847 CGTCTACGTCATGGTAAAAGATCG 59.563 45.833 0.00 0.00 34.11 3.69
1663 2058 4.738740 GTCTACGTCATGGTAAAAGATCGG 59.261 45.833 0.00 0.00 0.00 4.18
1668 2063 2.503765 TCATGGTAAAAGATCGGCTCCA 59.496 45.455 0.00 0.00 0.00 3.86
1733 2128 1.145738 ACTTGGGTTCTGATGCTTGGT 59.854 47.619 0.00 0.00 0.00 3.67
1762 2157 2.034221 AGCAAGACGGAAAGCCCC 59.966 61.111 0.00 0.00 0.00 5.80
1813 2227 1.451028 CTCCACTGCTAAGGCCTGC 60.451 63.158 5.69 7.18 37.74 4.85
1949 2497 6.441093 TGGATGCTCTAAATGTTGCTTAAG 57.559 37.500 0.00 0.00 0.00 1.85
2012 2560 7.641411 CACATTGTTCTTCACTGTAAACTGAAG 59.359 37.037 5.99 5.99 43.26 3.02
2017 2565 8.826710 TGTTCTTCACTGTAAACTGAAGTATTG 58.173 33.333 10.26 0.00 42.71 1.90
2066 2644 6.819397 AGTTGAGCTCTTGTATTTTTACCC 57.181 37.500 16.19 0.00 0.00 3.69
2202 2780 0.610687 AGACCAGCTACTTCACCTGC 59.389 55.000 0.00 0.00 0.00 4.85
2263 2841 6.319405 TGATTGAGCATTGTTGTAGTATGCAT 59.681 34.615 3.79 3.79 45.39 3.96
2264 2842 5.739752 TGAGCATTGTTGTAGTATGCATC 57.260 39.130 0.19 0.00 45.39 3.91
2265 2843 4.576053 TGAGCATTGTTGTAGTATGCATCC 59.424 41.667 0.19 0.00 45.39 3.51
2469 3048 2.569404 TGCCCCTGTTCAAAACTTTGTT 59.431 40.909 2.30 0.00 39.18 2.83
2476 3055 6.310224 CCCTGTTCAAAACTTTGTTAAGTGTG 59.690 38.462 2.30 0.00 43.74 3.82
2479 3058 9.139174 CTGTTCAAAACTTTGTTAAGTGTGAAT 57.861 29.630 14.95 0.00 43.74 2.57
2481 3060 8.921670 GTTCAAAACTTTGTTAAGTGTGAATGT 58.078 29.630 14.95 0.00 43.74 2.71
2488 3067 4.869215 TGTTAAGTGTGAATGTGCCATTG 58.131 39.130 5.31 0.00 0.00 2.82
2535 3114 3.192944 TCCTTGATTTCAGATGGACCCT 58.807 45.455 0.00 0.00 0.00 4.34
2717 3296 1.901948 ATTGTGTGCTGCTGCTGCT 60.902 52.632 27.67 7.82 40.48 4.24
2718 3297 2.142357 ATTGTGTGCTGCTGCTGCTG 62.142 55.000 27.67 16.73 40.48 4.41
2740 3319 4.037803 TGCTGCATGTTTCACACACTATTT 59.962 37.500 0.00 0.00 38.61 1.40
2793 3374 1.484240 CAAGGGGTGCTTTGGTTTTCA 59.516 47.619 0.00 0.00 0.00 2.69
2798 3379 3.323691 GGGGTGCTTTGGTTTTCAGTTAT 59.676 43.478 0.00 0.00 0.00 1.89
2871 3455 7.047891 GGTGATTGTAATCATGTCTGGTTCTA 58.952 38.462 10.20 0.00 46.17 2.10
2877 3461 8.547967 TGTAATCATGTCTGGTTCTAAGTTTC 57.452 34.615 0.00 0.00 0.00 2.78
2885 3469 5.175308 GTCTGGTTCTAAGTTTCGTCACTTC 59.825 44.000 5.44 0.00 38.07 3.01
2894 3478 5.713822 AGTTTCGTCACTTCAACTTGTAC 57.286 39.130 0.00 0.00 0.00 2.90
2895 3479 5.172934 AGTTTCGTCACTTCAACTTGTACA 58.827 37.500 0.00 0.00 0.00 2.90
2896 3480 5.291128 AGTTTCGTCACTTCAACTTGTACAG 59.709 40.000 0.00 0.00 0.00 2.74
2897 3481 4.380841 TCGTCACTTCAACTTGTACAGT 57.619 40.909 0.00 0.00 37.30 3.55
2906 3490 6.093633 ACTTCAACTTGTACAGTCAACTTTCC 59.906 38.462 0.00 0.00 32.94 3.13
2914 3498 5.411361 TGTACAGTCAACTTTCCACATATGC 59.589 40.000 1.58 0.00 0.00 3.14
3293 3878 6.861572 GGCCTCAAACTTGAAACAGTAATAAC 59.138 38.462 0.00 0.00 36.64 1.89
3360 3945 6.999456 GCACTAACTGCTCTATTTCTTCTTC 58.001 40.000 0.00 0.00 43.33 2.87
3440 4025 1.067516 CCAAAACAGAGGTGTGGCTTG 59.932 52.381 0.00 0.00 36.84 4.01
3603 4188 5.687780 TGTCCATAGCAATGATTCTGATGT 58.312 37.500 0.00 0.00 34.84 3.06
3616 4201 2.256306 TCTGATGTGGCAGAACCTGTA 58.744 47.619 0.00 0.00 41.65 2.74
3652 4237 2.026822 TGATGAGCCTCTTGGAAAGGAC 60.027 50.000 0.00 0.00 46.24 3.85
3769 4354 3.307480 CCTTCCCCTTGTGGTAGTGTTAG 60.307 52.174 0.00 0.00 0.00 2.34
3773 4358 3.055602 CCCCTTGTGGTAGTGTTAGTACC 60.056 52.174 6.00 6.00 43.07 3.34
3797 4382 7.178274 ACCTGTGGTTTTTATGCATAGATCAAA 59.822 33.333 6.50 1.98 27.29 2.69
3954 4539 4.109766 GCACTGACTTTTGTTTTGTACCC 58.890 43.478 0.00 0.00 0.00 3.69
4222 4807 9.406828 GAGAAAAATCAACAAATGGTTACCTAC 57.593 33.333 2.07 0.00 37.72 3.18
4255 4840 5.470098 TGTCTCTTATCTGCAACCAAAGTTC 59.530 40.000 0.00 0.00 32.45 3.01
4325 4910 5.045012 TCTTGGAAGATATGCATTGAGCT 57.955 39.130 3.54 0.00 45.94 4.09
4405 4990 2.693069 CTTCCTCAGTTCAGAATGCGT 58.307 47.619 0.00 0.00 34.76 5.24
4775 5369 5.221303 TGCTTTCTTCCCTTGTTCATTTCTG 60.221 40.000 0.00 0.00 0.00 3.02
4798 5392 5.637810 TGCCTCTTCTACATTTGTTCTTACG 59.362 40.000 0.00 0.00 0.00 3.18
5041 5636 4.405116 TGTTCCTGCTGCTTCAAATTTT 57.595 36.364 0.00 0.00 0.00 1.82
5142 5737 4.553330 AAACCAAGATGACTATGACCGT 57.447 40.909 0.00 0.00 0.00 4.83
5202 5797 2.092429 AGTTTCAGTGCTTGTTCTCCCA 60.092 45.455 0.00 0.00 0.00 4.37
5228 5823 1.544093 CCTTCTGTGTGACCATGCTGT 60.544 52.381 0.00 0.00 0.00 4.40
5233 5828 1.419762 TGTGTGACCATGCTGTACCTT 59.580 47.619 0.00 0.00 0.00 3.50
5372 5967 6.168270 ACAGATTCTACTGCCTAATTCCTC 57.832 41.667 0.00 0.00 41.06 3.71
5409 6006 3.308530 GCTGGTGCAAATTCTGTTACAC 58.691 45.455 0.00 0.00 39.41 2.90
5411 6008 2.292016 TGGTGCAAATTCTGTTACACGG 59.708 45.455 0.00 0.00 0.00 4.94
5458 6055 2.611225 ATAGGACAACTGCTGCTAGC 57.389 50.000 8.10 8.10 42.82 3.42
5475 6116 5.401550 TGCTAGCAATGAAAGTTACAATGC 58.598 37.500 16.84 0.00 42.31 3.56
5482 6123 7.227116 AGCAATGAAAGTTACAATGCACAATTT 59.773 29.630 0.00 0.00 43.77 1.82
5569 6210 5.705441 CAGATCACCAAAGTAAGTGCCTTTA 59.295 40.000 0.00 0.00 33.90 1.85
5570 6211 6.206634 CAGATCACCAAAGTAAGTGCCTTTAA 59.793 38.462 0.00 0.00 33.90 1.52
5583 6224 9.529325 GTAAGTGCCTTTAAAATGTCTTCTTTT 57.471 29.630 0.00 0.00 0.00 2.27
5646 6289 6.838198 TCTGTTACTCACACAATGTGTTAC 57.162 37.500 17.31 10.17 45.08 2.50
5702 6345 0.608640 ATGAGACAGTTCCCACGGTC 59.391 55.000 0.00 0.00 45.61 4.79
5864 6515 1.961277 CCGTGAGAACGCAAGGCTT 60.961 57.895 0.00 0.00 46.39 4.35
5921 6572 4.518249 CCATGAAGGAGAAGTAAGTTCCC 58.482 47.826 0.00 0.00 41.22 3.97
5932 6583 4.489306 AGTAAGTTCCCCTATGCTGTTC 57.511 45.455 0.00 0.00 0.00 3.18
5955 6606 7.169158 TCAAAATTGAAAACTGAGACCAGTT 57.831 32.000 5.11 5.11 46.82 3.16
5957 6608 7.122650 TCAAAATTGAAAACTGAGACCAGTTCT 59.877 33.333 10.73 0.00 45.36 3.01
5981 6633 7.065085 TCTGAAAACTGAGACAGAAACTGAAAG 59.935 37.037 5.76 0.94 36.63 2.62
5983 6635 7.390440 TGAAAACTGAGACAGAAACTGAAAGAA 59.610 33.333 5.76 0.00 34.61 2.52
6013 6665 1.812571 GGTTGCAGGTACATCCAAGTG 59.187 52.381 0.00 0.00 39.02 3.16
6040 6692 3.357079 GTGGCTGTCCCTGTTGCG 61.357 66.667 0.00 0.00 0.00 4.85
6058 6710 3.077556 CGGGCACTGGGCTACTCT 61.078 66.667 0.21 0.00 44.01 3.24
6070 6722 1.519455 CTACTCTTTGGGCCGAGCG 60.519 63.158 6.81 1.49 0.00 5.03
6310 6966 2.973945 AGGATTGCTCGAGTTGTTACC 58.026 47.619 15.13 10.27 0.00 2.85
6313 6969 2.228138 TTGCTCGAGTTGTTACCGTT 57.772 45.000 15.13 0.00 0.00 4.44
6452 7112 3.329225 TGGAATTGGTCTGGTGTATGTGA 59.671 43.478 0.00 0.00 0.00 3.58
6472 7142 6.003326 TGTGAGATTTGTTCTATTTGCTGGA 58.997 36.000 0.00 0.00 33.74 3.86
6474 7144 7.014134 TGTGAGATTTGTTCTATTTGCTGGAAA 59.986 33.333 0.00 0.00 33.74 3.13
6477 7147 8.992835 AGATTTGTTCTATTTGCTGGAAATTC 57.007 30.769 12.38 2.13 35.74 2.17
6479 7149 7.945033 TTTGTTCTATTTGCTGGAAATTCAC 57.055 32.000 12.38 7.72 35.74 3.18
6480 7150 6.024552 TGTTCTATTTGCTGGAAATTCACC 57.975 37.500 12.38 0.91 35.74 4.02
6481 7151 4.963276 TCTATTTGCTGGAAATTCACCG 57.037 40.909 12.38 0.00 35.74 4.94
6482 7152 3.694072 TCTATTTGCTGGAAATTCACCGG 59.306 43.478 12.38 0.00 35.74 5.28
6487 7157 1.247567 CTGGAAATTCACCGGCAGTT 58.752 50.000 0.00 0.00 0.00 3.16
6488 7158 2.432444 CTGGAAATTCACCGGCAGTTA 58.568 47.619 0.00 0.00 0.00 2.24
6489 7159 2.817258 CTGGAAATTCACCGGCAGTTAA 59.183 45.455 0.00 0.00 0.00 2.01
6490 7160 3.223435 TGGAAATTCACCGGCAGTTAAA 58.777 40.909 0.00 0.00 0.00 1.52
6491 7161 3.254657 TGGAAATTCACCGGCAGTTAAAG 59.745 43.478 0.00 0.00 0.00 1.85
6492 7162 3.254903 GGAAATTCACCGGCAGTTAAAGT 59.745 43.478 0.00 0.00 0.00 2.66
6493 7163 4.261867 GGAAATTCACCGGCAGTTAAAGTT 60.262 41.667 0.00 0.00 0.00 2.66
6494 7164 5.048573 GGAAATTCACCGGCAGTTAAAGTTA 60.049 40.000 0.00 0.00 0.00 2.24
6495 7165 6.349860 GGAAATTCACCGGCAGTTAAAGTTAT 60.350 38.462 0.00 0.00 0.00 1.89
6496 7166 5.560966 ATTCACCGGCAGTTAAAGTTATG 57.439 39.130 0.00 0.00 0.00 1.90
6497 7167 4.010667 TCACCGGCAGTTAAAGTTATGT 57.989 40.909 0.00 0.00 0.00 2.29
6498 7168 3.749088 TCACCGGCAGTTAAAGTTATGTG 59.251 43.478 0.00 0.00 0.00 3.21
6528 7198 5.603170 AATTGTAGATTTGGGCATGGAAG 57.397 39.130 0.00 0.00 0.00 3.46
6529 7199 3.017048 TGTAGATTTGGGCATGGAAGG 57.983 47.619 0.00 0.00 0.00 3.46
6539 7209 3.980022 TGGGCATGGAAGGATAGTTGATA 59.020 43.478 0.00 0.00 0.00 2.15
6542 7293 4.457257 GGCATGGAAGGATAGTTGATAAGC 59.543 45.833 0.00 0.00 0.00 3.09
6560 7311 1.618343 AGCACAAAGTTAATGTGGGGC 59.382 47.619 9.23 0.00 46.43 5.80
6561 7312 1.618343 GCACAAAGTTAATGTGGGGCT 59.382 47.619 9.23 0.00 46.43 5.19
6563 7314 3.860754 GCACAAAGTTAATGTGGGGCTTC 60.861 47.826 9.23 0.00 46.43 3.86
6564 7315 3.573967 CACAAAGTTAATGTGGGGCTTCT 59.426 43.478 0.46 0.00 43.45 2.85
6567 7318 4.929146 AAGTTAATGTGGGGCTTCTACT 57.071 40.909 0.00 0.00 0.00 2.57
6568 7319 4.929146 AGTTAATGTGGGGCTTCTACTT 57.071 40.909 0.00 0.00 0.00 2.24
6569 7320 5.256806 AGTTAATGTGGGGCTTCTACTTT 57.743 39.130 0.00 0.00 0.00 2.66
6571 7322 6.075315 AGTTAATGTGGGGCTTCTACTTTTT 58.925 36.000 0.00 0.00 0.00 1.94
6572 7323 4.871933 AATGTGGGGCTTCTACTTTTTG 57.128 40.909 0.00 0.00 0.00 2.44
6573 7324 3.586470 TGTGGGGCTTCTACTTTTTGA 57.414 42.857 0.00 0.00 0.00 2.69
6574 7325 3.904717 TGTGGGGCTTCTACTTTTTGAA 58.095 40.909 0.00 0.00 0.00 2.69
6578 7329 4.245660 GGGGCTTCTACTTTTTGAAATGC 58.754 43.478 0.00 0.00 0.00 3.56
6579 7330 4.262420 GGGGCTTCTACTTTTTGAAATGCA 60.262 41.667 0.00 0.00 0.00 3.96
6580 7331 5.296748 GGGCTTCTACTTTTTGAAATGCAA 58.703 37.500 0.00 0.00 33.88 4.08
6581 7332 5.757808 GGGCTTCTACTTTTTGAAATGCAAA 59.242 36.000 0.00 0.00 44.38 3.68
6582 7333 6.073602 GGGCTTCTACTTTTTGAAATGCAAAG 60.074 38.462 0.00 0.00 46.38 2.77
6583 7334 6.479990 GGCTTCTACTTTTTGAAATGCAAAGT 59.520 34.615 0.00 0.00 46.38 2.66
6585 7336 9.030301 GCTTCTACTTTTTGAAATGCAAAGTTA 57.970 29.630 3.23 0.00 46.38 2.24
6591 7342 8.955388 ACTTTTTGAAATGCAAAGTTAATGGTT 58.045 25.926 0.00 0.00 46.38 3.67
6596 7347 9.685828 TTGAAATGCAAAGTTAATGGTTAGTAC 57.314 29.630 0.00 0.00 32.46 2.73
6648 7409 8.784043 TGTATGAAAAGAAAGAGTAGAAAAGGC 58.216 33.333 0.00 0.00 0.00 4.35
6649 7410 7.823745 ATGAAAAGAAAGAGTAGAAAAGGCA 57.176 32.000 0.00 0.00 0.00 4.75
6726 7487 1.821088 AGAAAACACCAGAGGGAGGT 58.179 50.000 0.00 0.00 40.85 3.85
6828 7592 4.961438 AAAGATGGAAAAACATGGCACT 57.039 36.364 0.00 0.00 0.00 4.40
6831 7595 3.642848 AGATGGAAAAACATGGCACTGTT 59.357 39.130 0.00 8.77 41.01 3.16
6838 7602 3.719268 AACATGGCACTGTTGATAGGA 57.281 42.857 12.42 0.00 37.93 2.94
6840 7604 1.935873 CATGGCACTGTTGATAGGACG 59.064 52.381 0.00 0.00 0.00 4.79
6861 7625 4.434685 GCCTCTTGCAGATCGGAG 57.565 61.111 0.00 0.00 40.77 4.63
6862 7626 1.886777 GCCTCTTGCAGATCGGAGC 60.887 63.158 0.00 0.00 40.77 4.70
6863 7627 1.821936 CCTCTTGCAGATCGGAGCT 59.178 57.895 0.00 0.00 0.00 4.09
6865 7629 1.269517 CCTCTTGCAGATCGGAGCTAC 60.270 57.143 0.00 0.00 0.00 3.58
6869 7633 0.175760 TGCAGATCGGAGCTACAACC 59.824 55.000 0.00 0.00 0.00 3.77
6877 7641 0.824759 GGAGCTACAACCGTGATCCT 59.175 55.000 0.00 0.00 0.00 3.24
6881 7645 1.755380 GCTACAACCGTGATCCTAGGT 59.245 52.381 9.08 0.00 40.50 3.08
6884 7648 1.975680 ACAACCGTGATCCTAGGTGTT 59.024 47.619 9.08 1.72 38.44 3.32
6888 7652 1.469251 CCGTGATCCTAGGTGTTGTCG 60.469 57.143 9.08 7.61 0.00 4.35
6892 7656 3.056749 GTGATCCTAGGTGTTGTCGTCTT 60.057 47.826 9.08 0.00 0.00 3.01
6893 7657 3.576982 TGATCCTAGGTGTTGTCGTCTTT 59.423 43.478 9.08 0.00 0.00 2.52
6894 7658 4.768448 TGATCCTAGGTGTTGTCGTCTTTA 59.232 41.667 9.08 0.00 0.00 1.85
6895 7659 5.244402 TGATCCTAGGTGTTGTCGTCTTTAA 59.756 40.000 9.08 0.00 0.00 1.52
6896 7660 5.733620 TCCTAGGTGTTGTCGTCTTTAAT 57.266 39.130 9.08 0.00 0.00 1.40
6906 7670 5.524511 TGTCGTCTTTAATGAATCAACCG 57.475 39.130 0.00 0.00 0.00 4.44
6910 7674 6.518736 GTCGTCTTTAATGAATCAACCGTTTC 59.481 38.462 0.00 0.00 0.00 2.78
6914 7678 8.850452 GTCTTTAATGAATCAACCGTTTCAATC 58.150 33.333 0.00 0.00 35.14 2.67
6915 7679 8.026607 TCTTTAATGAATCAACCGTTTCAATCC 58.973 33.333 0.00 0.00 35.14 3.01
6935 7699 0.041135 GGAACTCTATCGCCGAGTCG 60.041 60.000 5.29 5.29 40.65 4.18
6937 7701 1.063764 GAACTCTATCGCCGAGTCGTT 59.936 52.381 12.31 0.00 40.65 3.85
6938 7702 1.945387 ACTCTATCGCCGAGTCGTTA 58.055 50.000 12.31 0.00 37.13 3.18
6939 7703 2.283298 ACTCTATCGCCGAGTCGTTAA 58.717 47.619 12.31 0.00 37.13 2.01
7002 7766 4.462483 GTGTCCAGCAATTATGAAGGGAAA 59.538 41.667 0.00 0.00 0.00 3.13
7060 7824 6.312918 TGCAAAACGGTTAATAAAACTTGCAA 59.687 30.769 17.84 0.00 42.45 4.08
7086 7850 8.738645 AAAACCATACACATAGAAATCTCTCC 57.261 34.615 0.00 0.00 32.70 3.71
7087 7851 7.437713 AACCATACACATAGAAATCTCTCCA 57.562 36.000 0.00 0.00 32.70 3.86
7088 7852 7.623999 ACCATACACATAGAAATCTCTCCAT 57.376 36.000 0.00 0.00 32.70 3.41
7089 7853 7.448420 ACCATACACATAGAAATCTCTCCATG 58.552 38.462 0.00 0.00 32.70 3.66
7090 7854 6.370994 CCATACACATAGAAATCTCTCCATGC 59.629 42.308 0.00 0.00 32.70 4.06
7091 7855 4.712476 ACACATAGAAATCTCTCCATGCC 58.288 43.478 0.00 0.00 32.70 4.40
7092 7856 3.744942 CACATAGAAATCTCTCCATGCCG 59.255 47.826 0.00 0.00 32.70 5.69
7093 7857 2.533266 TAGAAATCTCTCCATGCCGC 57.467 50.000 0.00 0.00 32.70 6.53
7094 7858 0.531532 AGAAATCTCTCCATGCCGCG 60.532 55.000 0.00 0.00 0.00 6.46
7095 7859 1.502163 GAAATCTCTCCATGCCGCGG 61.502 60.000 24.05 24.05 0.00 6.46
7106 7870 2.954020 ATGCCGCGGTCTGATGTACG 62.954 60.000 28.70 0.00 0.00 3.67
7117 7881 4.416620 GTCTGATGTACGAGGACAAAGAG 58.583 47.826 4.93 0.00 30.80 2.85
7118 7882 4.079970 TCTGATGTACGAGGACAAAGAGT 58.920 43.478 0.00 0.00 31.83 3.24
7153 7917 1.149101 TTTGCCCCTCAAACTCCTCT 58.851 50.000 0.00 0.00 39.58 3.69
7161 7925 1.203523 CTCAAACTCCTCTGGGTCTCG 59.796 57.143 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.105697 TGGGGAGCTCCTTTCTTTTTAGAA 59.894 41.667 31.36 1.87 35.95 2.10
48 49 3.655777 TGGGGAGCTCCTTTCTTTTTAGA 59.344 43.478 31.36 2.53 35.95 2.10
49 50 4.034285 TGGGGAGCTCCTTTCTTTTTAG 57.966 45.455 31.36 0.00 35.95 1.85
50 51 4.675063 ATGGGGAGCTCCTTTCTTTTTA 57.325 40.909 31.36 8.47 35.95 1.52
51 52 3.549898 ATGGGGAGCTCCTTTCTTTTT 57.450 42.857 31.36 6.23 35.95 1.94
52 53 3.549898 AATGGGGAGCTCCTTTCTTTT 57.450 42.857 31.36 13.93 35.95 2.27
53 54 3.549898 AAATGGGGAGCTCCTTTCTTT 57.450 42.857 31.36 20.93 35.95 2.52
54 55 3.549898 AAAATGGGGAGCTCCTTTCTT 57.450 42.857 31.36 16.96 35.95 2.52
55 56 3.549898 AAAAATGGGGAGCTCCTTTCT 57.450 42.857 31.36 9.28 35.95 2.52
75 76 4.714632 AGAAAACGAAAGGAGGATGTGAA 58.285 39.130 0.00 0.00 0.00 3.18
86 87 4.149046 CCTCGACAGAAGAGAAAACGAAAG 59.851 45.833 0.00 0.00 37.93 2.62
89 90 2.607282 GCCTCGACAGAAGAGAAAACGA 60.607 50.000 0.00 0.00 37.93 3.85
96 97 2.288457 TGTGAAAGCCTCGACAGAAGAG 60.288 50.000 0.00 0.00 35.60 2.85
97 98 1.686587 TGTGAAAGCCTCGACAGAAGA 59.313 47.619 0.00 0.00 0.00 2.87
118 122 3.359695 TTTTGGAACGGAGGGAATAGG 57.640 47.619 0.00 0.00 0.00 2.57
120 124 4.141344 CCCTATTTTGGAACGGAGGGAATA 60.141 45.833 0.00 0.00 45.65 1.75
123 127 1.562475 CCCTATTTTGGAACGGAGGGA 59.438 52.381 0.00 0.00 45.65 4.20
124 128 2.052782 CCCTATTTTGGAACGGAGGG 57.947 55.000 0.00 0.00 37.88 4.30
125 129 2.026636 TGACCCTATTTTGGAACGGAGG 60.027 50.000 0.00 0.00 0.00 4.30
126 130 3.343941 TGACCCTATTTTGGAACGGAG 57.656 47.619 0.00 0.00 0.00 4.63
127 131 3.521937 AGATGACCCTATTTTGGAACGGA 59.478 43.478 0.00 0.00 0.00 4.69
128 132 3.886123 AGATGACCCTATTTTGGAACGG 58.114 45.455 0.00 0.00 0.00 4.44
129 133 7.568199 AAATAGATGACCCTATTTTGGAACG 57.432 36.000 0.00 0.00 43.16 3.95
136 140 6.546034 CCGTTCCAAAATAGATGACCCTATTT 59.454 38.462 0.00 0.00 45.90 1.40
137 141 6.062095 CCGTTCCAAAATAGATGACCCTATT 58.938 40.000 0.00 0.00 40.11 1.73
138 142 5.368523 TCCGTTCCAAAATAGATGACCCTAT 59.631 40.000 0.00 0.00 0.00 2.57
139 143 4.717778 TCCGTTCCAAAATAGATGACCCTA 59.282 41.667 0.00 0.00 0.00 3.53
140 144 3.521937 TCCGTTCCAAAATAGATGACCCT 59.478 43.478 0.00 0.00 0.00 4.34
141 145 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
142 146 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
143 147 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
144 148 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
145 149 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
146 150 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
147 151 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
148 152 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
149 153 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
150 154 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
151 155 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
152 156 2.262637 ACATACTCCCTCCGTTCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
153 157 1.946984 ACATACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
154 158 1.946984 AACATACTCCCTCCGTTCCA 58.053 50.000 0.00 0.00 0.00 3.53
155 159 3.345508 AAAACATACTCCCTCCGTTCC 57.654 47.619 0.00 0.00 0.00 3.62
200 204 2.551912 GCCCCACGGTGTGAAACTG 61.552 63.158 7.45 0.00 41.37 3.16
259 269 4.927782 GGGCACACGCTCACCACA 62.928 66.667 0.00 0.00 39.07 4.17
294 308 4.087892 CCCTGTCTGTCTGGCGGG 62.088 72.222 2.21 2.21 46.24 6.13
296 310 2.262915 GTCCCTGTCTGTCTGGCG 59.737 66.667 0.00 0.00 34.39 5.69
297 311 2.262915 CGTCCCTGTCTGTCTGGC 59.737 66.667 0.00 0.00 34.39 4.85
298 312 1.179174 TGTCGTCCCTGTCTGTCTGG 61.179 60.000 0.00 0.00 35.32 3.86
306 320 3.991051 CTGCCGTGTCGTCCCTGT 61.991 66.667 0.00 0.00 0.00 4.00
335 349 2.184167 GTTCGTGTGGTGGGTGTGG 61.184 63.158 0.00 0.00 0.00 4.17
345 359 7.499438 TTTGAATTTTGTTACTGTTCGTGTG 57.501 32.000 0.00 0.00 0.00 3.82
346 360 8.696410 ATTTTGAATTTTGTTACTGTTCGTGT 57.304 26.923 0.00 0.00 0.00 4.49
347 361 8.265998 GGATTTTGAATTTTGTTACTGTTCGTG 58.734 33.333 0.00 0.00 0.00 4.35
348 362 7.436970 GGGATTTTGAATTTTGTTACTGTTCGT 59.563 33.333 0.00 0.00 0.00 3.85
349 363 7.358023 CGGGATTTTGAATTTTGTTACTGTTCG 60.358 37.037 0.00 0.00 0.00 3.95
351 365 7.493367 TCGGGATTTTGAATTTTGTTACTGTT 58.507 30.769 0.00 0.00 0.00 3.16
353 367 7.938563 TTCGGGATTTTGAATTTTGTTACTG 57.061 32.000 0.00 0.00 0.00 2.74
355 369 7.064134 GGGATTCGGGATTTTGAATTTTGTTAC 59.936 37.037 0.00 0.00 35.06 2.50
357 371 5.937540 GGGATTCGGGATTTTGAATTTTGTT 59.062 36.000 0.00 0.00 35.06 2.83
358 372 5.487433 GGGATTCGGGATTTTGAATTTTGT 58.513 37.500 0.00 0.00 35.06 2.83
359 373 4.875536 GGGGATTCGGGATTTTGAATTTTG 59.124 41.667 0.00 0.00 35.06 2.44
360 374 4.080582 GGGGGATTCGGGATTTTGAATTTT 60.081 41.667 0.00 0.00 35.06 1.82
361 375 3.454447 GGGGGATTCGGGATTTTGAATTT 59.546 43.478 0.00 0.00 35.06 1.82
362 376 3.038280 GGGGGATTCGGGATTTTGAATT 58.962 45.455 0.00 0.00 35.06 2.17
363 377 2.677914 GGGGGATTCGGGATTTTGAAT 58.322 47.619 0.00 0.00 37.52 2.57
364 378 2.153034 GGGGGATTCGGGATTTTGAA 57.847 50.000 0.00 0.00 0.00 2.69
365 379 3.915993 GGGGGATTCGGGATTTTGA 57.084 52.632 0.00 0.00 0.00 2.69
418 432 1.005512 GCCGAAAATTTTGGGGCGT 60.006 52.632 27.12 0.00 36.65 5.68
514 534 3.429580 GAATGGGGGTGGGAGGGG 61.430 72.222 0.00 0.00 0.00 4.79
515 535 3.429580 GGAATGGGGGTGGGAGGG 61.430 72.222 0.00 0.00 0.00 4.30
516 536 1.593166 ATTGGAATGGGGGTGGGAGG 61.593 60.000 0.00 0.00 0.00 4.30
517 537 0.106015 GATTGGAATGGGGGTGGGAG 60.106 60.000 0.00 0.00 0.00 4.30
518 538 1.589399 GGATTGGAATGGGGGTGGGA 61.589 60.000 0.00 0.00 0.00 4.37
1202 1588 4.214327 GCCTCTCCTCCGCCTTCG 62.214 72.222 0.00 0.00 0.00 3.79
1462 1857 2.743928 CACGCACCTCTTGGGAGC 60.744 66.667 0.00 0.00 46.07 4.70
1464 1859 4.680237 CGCACGCACCTCTTGGGA 62.680 66.667 0.00 0.00 40.70 4.37
1498 1893 0.324645 AAATGCAAAGCCGGGGATCT 60.325 50.000 2.18 0.00 0.00 2.75
1662 2057 1.198759 TGGTAGGAAGGTGTGGAGCC 61.199 60.000 0.00 0.00 0.00 4.70
1663 2058 0.912486 ATGGTAGGAAGGTGTGGAGC 59.088 55.000 0.00 0.00 0.00 4.70
1668 2063 4.332828 GCACTTTTATGGTAGGAAGGTGT 58.667 43.478 0.00 0.00 34.18 4.16
1733 2128 1.214367 GTCTTGCTCCGTTGAACGAA 58.786 50.000 20.47 0.00 46.05 3.85
1781 2176 9.109393 CTTAGCAGTGGAGCAATTACTAAATTA 57.891 33.333 0.00 0.00 33.45 1.40
1784 2179 5.880332 CCTTAGCAGTGGAGCAATTACTAAA 59.120 40.000 0.00 0.00 36.85 1.85
1949 2497 0.890683 CTTTGCCAACCAGATCCACC 59.109 55.000 0.00 0.00 0.00 4.61
1973 2521 7.967854 TGAAGAACAATGTGAAAACAAGTAGTG 59.032 33.333 0.00 0.00 0.00 2.74
2012 2560 7.704899 GGTTGTTATACATTTTCTGCCCAATAC 59.295 37.037 0.00 0.00 0.00 1.89
2017 2565 5.417580 TCTGGTTGTTATACATTTTCTGCCC 59.582 40.000 0.00 0.00 0.00 5.36
2064 2642 3.054802 AGGAAGTGATTACTGAAGCAGGG 60.055 47.826 0.00 0.00 37.19 4.45
2066 2644 6.815089 AGATAGGAAGTGATTACTGAAGCAG 58.185 40.000 0.00 0.00 37.19 4.24
2233 2811 7.686438 ACTACAACAATGCTCAATCAATACA 57.314 32.000 0.00 0.00 0.00 2.29
2270 2848 2.338577 AAGCTAGCCAGGCATTAGTG 57.661 50.000 15.80 0.00 0.00 2.74
2283 2861 9.098355 TGCAAGATAACTGTTGTTATAAGCTAG 57.902 33.333 2.69 0.00 46.05 3.42
2481 3060 5.711506 AGTGAGAAACAATGTATCAATGGCA 59.288 36.000 0.00 0.00 0.00 4.92
2535 3114 2.123338 AGTTTGGCCTTGGCTGCA 60.123 55.556 11.71 0.00 0.00 4.41
2745 3324 8.729805 ATGAACTCTGGAGAAGCTAAAATAAG 57.270 34.615 4.49 0.00 0.00 1.73
2757 3338 2.290514 CCCTTGCAATGAACTCTGGAGA 60.291 50.000 0.00 0.00 0.00 3.71
2852 3436 7.330946 CGAAACTTAGAACCAGACATGATTACA 59.669 37.037 0.00 0.00 0.00 2.41
2871 3455 5.640357 TGTACAAGTTGAAGTGACGAAACTT 59.360 36.000 10.54 7.12 42.13 2.66
2877 3461 4.109766 TGACTGTACAAGTTGAAGTGACG 58.890 43.478 10.54 0.00 40.07 4.35
2885 3469 5.123186 TGTGGAAAGTTGACTGTACAAGTTG 59.877 40.000 0.00 0.00 40.89 3.16
2894 3478 4.673580 GCAGCATATGTGGAAAGTTGACTG 60.674 45.833 4.29 0.00 0.00 3.51
2895 3479 3.441572 GCAGCATATGTGGAAAGTTGACT 59.558 43.478 4.29 0.00 0.00 3.41
2896 3480 3.441572 AGCAGCATATGTGGAAAGTTGAC 59.558 43.478 4.29 0.00 0.00 3.18
2897 3481 3.441222 CAGCAGCATATGTGGAAAGTTGA 59.559 43.478 4.29 0.00 0.00 3.18
2914 3498 7.444792 AGGATCATAGAAATTTTAGCTCAGCAG 59.555 37.037 0.00 0.00 0.00 4.24
3007 3592 7.450903 ACCAGTTTAGCTGTCACTAATAAACT 58.549 34.615 0.00 0.00 43.75 2.66
3050 3635 7.769970 GGGGCAAATCAATCATTTAAATTCTGA 59.230 33.333 0.00 2.42 32.48 3.27
3062 3647 4.870636 AGAATACAGGGGCAAATCAATCA 58.129 39.130 0.00 0.00 0.00 2.57
3063 3648 5.221322 GGAAGAATACAGGGGCAAATCAATC 60.221 44.000 0.00 0.00 0.00 2.67
3273 3858 6.640907 GCAGGGTTATTACTGTTTCAAGTTTG 59.359 38.462 0.00 0.00 37.07 2.93
3293 3878 2.636647 AAACAAAATGTTGGGCAGGG 57.363 45.000 0.00 0.00 40.14 4.45
3346 3931 8.782144 GCCCATTTCTATGAAGAAGAAATAGAG 58.218 37.037 9.94 4.78 46.77 2.43
3360 3945 3.379372 CAGGTCAACAGCCCATTTCTATG 59.621 47.826 0.00 0.00 0.00 2.23
3603 4188 1.902508 CTTCCTCTACAGGTTCTGCCA 59.097 52.381 0.00 0.00 41.28 4.92
3616 4201 3.642848 GCTCATCATCTTCCTCTTCCTCT 59.357 47.826 0.00 0.00 0.00 3.69
3652 4237 3.420839 AGCTTTTCAACCACAAACTCG 57.579 42.857 0.00 0.00 0.00 4.18
3769 4354 6.995511 TCTATGCATAAAAACCACAGGTAC 57.004 37.500 8.00 0.00 33.12 3.34
3773 4358 9.590451 AATTTGATCTATGCATAAAAACCACAG 57.410 29.630 8.00 0.00 0.00 3.66
3954 4539 3.947910 ATTTTCAATGGGCAGTCACTG 57.052 42.857 0.00 0.00 34.12 3.66
4222 4807 5.121105 TGCAGATAAGAGACAATGTCCATG 58.879 41.667 10.12 0.49 32.18 3.66
4255 4840 1.208052 ACCACATTCTCCATCAGGACG 59.792 52.381 0.00 0.00 39.61 4.79
4325 4910 6.572509 GCTTGGTAGTTCAGAGATACAAGACA 60.573 42.308 0.00 0.00 0.00 3.41
4405 4990 0.110486 GAGCTCCCCAAAGGAACACA 59.890 55.000 0.87 0.00 46.94 3.72
4484 5073 4.201724 GCAAAATACGTCAGATCACTCCAC 60.202 45.833 0.00 0.00 0.00 4.02
4775 5369 5.638234 ACGTAAGAACAAATGTAGAAGAGGC 59.362 40.000 0.00 0.00 43.62 4.70
4798 5392 6.992715 AGTTGTCTACCTGCATAATAATGGAC 59.007 38.462 0.00 0.00 33.38 4.02
4937 5531 5.948842 AGGCCCTTTACAAAGTAAGAAGAA 58.051 37.500 0.00 0.00 34.20 2.52
4984 5579 7.136822 ACATATACAGGCATAAGACAGGAAA 57.863 36.000 0.00 0.00 0.00 3.13
5025 5620 7.033791 ACATATCTGAAAATTTGAAGCAGCAG 58.966 34.615 0.00 0.00 0.00 4.24
5041 5636 8.274322 ACCAAATGAATAGTCCAACATATCTGA 58.726 33.333 0.00 0.00 0.00 3.27
5142 5737 3.450817 TCTTTATCGGAATCTGCTGGACA 59.549 43.478 0.00 0.00 0.00 4.02
5202 5797 1.064758 TGGTCACACAGAAGGCAAAGT 60.065 47.619 0.00 0.00 0.00 2.66
5228 5823 0.902531 CGCTCCCTGGAAGAAAGGTA 59.097 55.000 0.00 0.00 34.07 3.08
5233 5828 2.618045 GGAAATTCGCTCCCTGGAAGAA 60.618 50.000 0.00 6.32 34.07 2.52
5372 5967 4.386652 GCACCAGCATACAAACATTCAAAG 59.613 41.667 0.00 0.00 41.58 2.77
5409 6006 0.827925 TCAGGTAGCATCCTAGGCCG 60.828 60.000 2.96 0.00 35.87 6.13
5411 6008 1.762957 TGTTCAGGTAGCATCCTAGGC 59.237 52.381 2.96 0.00 35.87 3.93
5458 6055 8.702408 CAAATTGTGCATTGTAACTTTCATTG 57.298 30.769 0.00 0.00 0.00 2.82
5475 6116 6.366877 ACAAGCTAGCATTTAAGCAAATTGTG 59.633 34.615 18.83 0.00 41.32 3.33
5482 6123 5.183713 ACATGAACAAGCTAGCATTTAAGCA 59.816 36.000 18.83 6.35 41.32 3.91
5583 6224 7.824289 CAGTACAGTTGGAGAAATGGAGAAATA 59.176 37.037 0.00 0.00 31.23 1.40
5586 6227 5.071788 ACAGTACAGTTGGAGAAATGGAGAA 59.928 40.000 0.00 0.00 31.23 2.87
5646 6289 0.318614 AACGGCCTGCAAAAACATCG 60.319 50.000 0.00 0.00 0.00 3.84
5702 6345 2.125753 GGCTCTGCTCTGGTCACG 60.126 66.667 0.00 0.00 0.00 4.35
5834 6485 1.847818 TCTCACGGACAGTCAAAACG 58.152 50.000 2.17 0.00 0.00 3.60
5876 6527 3.193157 CCGTACATCCGGTAGTAATCG 57.807 52.381 0.00 6.71 43.07 3.34
5921 6572 7.652909 TCAGTTTTCAATTTTGAACAGCATAGG 59.347 33.333 5.26 0.00 45.99 2.57
5948 6599 4.442706 TGTCTCAGTTTTCAGAACTGGTC 58.557 43.478 16.28 9.26 45.66 4.02
5953 6604 6.313905 TCAGTTTCTGTCTCAGTTTTCAGAAC 59.686 38.462 6.05 3.34 43.48 3.01
5955 6606 5.977635 TCAGTTTCTGTCTCAGTTTTCAGA 58.022 37.500 0.00 0.00 35.54 3.27
5957 6608 6.878923 TCTTTCAGTTTCTGTCTCAGTTTTCA 59.121 34.615 0.00 0.00 32.61 2.69
5958 6609 7.308782 TCTTTCAGTTTCTGTCTCAGTTTTC 57.691 36.000 0.00 0.00 32.61 2.29
5981 6633 1.667724 CCTGCAACCATCATCGAGTTC 59.332 52.381 0.00 0.00 0.00 3.01
5983 6635 0.615331 ACCTGCAACCATCATCGAGT 59.385 50.000 0.00 0.00 0.00 4.18
6040 6692 4.840005 GAGTAGCCCAGTGCCCGC 62.840 72.222 0.00 0.00 42.71 6.13
6058 6710 3.599285 CTGGTACGCTCGGCCCAAA 62.599 63.158 0.00 0.00 0.00 3.28
6070 6722 2.064581 ATCCACCTCGCCCTGGTAC 61.065 63.158 0.00 0.00 35.80 3.34
6310 6966 0.655733 AGTTCAACCAGCGACAAACG 59.344 50.000 0.00 0.00 45.66 3.60
6313 6969 1.400142 CACAAGTTCAACCAGCGACAA 59.600 47.619 0.00 0.00 0.00 3.18
6452 7112 8.587608 TGAATTTCCAGCAAATAGAACAAATCT 58.412 29.630 0.00 0.00 42.48 2.40
6472 7142 4.929819 AACTTTAACTGCCGGTGAATTT 57.070 36.364 1.90 0.00 0.00 1.82
6474 7144 5.007682 ACATAACTTTAACTGCCGGTGAAT 58.992 37.500 1.90 0.00 0.00 2.57
6477 7147 3.749088 TCACATAACTTTAACTGCCGGTG 59.251 43.478 1.90 0.00 0.00 4.94
6479 7149 4.671766 GCTTCACATAACTTTAACTGCCGG 60.672 45.833 0.00 0.00 0.00 6.13
6480 7150 4.154195 AGCTTCACATAACTTTAACTGCCG 59.846 41.667 0.00 0.00 0.00 5.69
6481 7151 5.181245 TGAGCTTCACATAACTTTAACTGCC 59.819 40.000 0.00 0.00 0.00 4.85
6482 7152 6.241207 TGAGCTTCACATAACTTTAACTGC 57.759 37.500 0.00 0.00 0.00 4.40
6483 7153 9.683069 AATTTGAGCTTCACATAACTTTAACTG 57.317 29.630 0.00 0.00 0.00 3.16
6484 7154 9.683069 CAATTTGAGCTTCACATAACTTTAACT 57.317 29.630 0.00 0.00 0.00 2.24
6485 7155 9.463443 ACAATTTGAGCTTCACATAACTTTAAC 57.537 29.630 2.79 0.00 0.00 2.01
6488 7158 9.066892 TCTACAATTTGAGCTTCACATAACTTT 57.933 29.630 2.79 0.00 0.00 2.66
6489 7159 8.621532 TCTACAATTTGAGCTTCACATAACTT 57.378 30.769 2.79 0.00 0.00 2.66
6490 7160 8.798859 ATCTACAATTTGAGCTTCACATAACT 57.201 30.769 2.79 0.00 0.00 2.24
6491 7161 9.846248 AAATCTACAATTTGAGCTTCACATAAC 57.154 29.630 2.79 0.00 0.00 1.89
6492 7162 9.844790 CAAATCTACAATTTGAGCTTCACATAA 57.155 29.630 2.79 0.00 40.42 1.90
6493 7163 8.461222 CCAAATCTACAATTTGAGCTTCACATA 58.539 33.333 11.12 0.00 40.42 2.29
6494 7164 7.318141 CCAAATCTACAATTTGAGCTTCACAT 58.682 34.615 11.12 0.00 40.42 3.21
6495 7165 6.294675 CCCAAATCTACAATTTGAGCTTCACA 60.295 38.462 11.12 0.00 40.42 3.58
6496 7166 6.095377 CCCAAATCTACAATTTGAGCTTCAC 58.905 40.000 11.12 0.00 40.42 3.18
6497 7167 5.336690 GCCCAAATCTACAATTTGAGCTTCA 60.337 40.000 11.12 0.00 38.92 3.02
6498 7168 5.105063 GCCCAAATCTACAATTTGAGCTTC 58.895 41.667 11.12 0.00 38.92 3.86
6528 7198 9.722056 CATTAACTTTGTGCTTATCAACTATCC 57.278 33.333 0.00 0.00 0.00 2.59
6539 7209 2.037121 GCCCCACATTAACTTTGTGCTT 59.963 45.455 2.70 0.00 42.47 3.91
6542 7293 3.573967 AGAAGCCCCACATTAACTTTGTG 59.426 43.478 1.41 1.41 43.25 3.33
6564 7315 9.606631 ACCATTAACTTTGCATTTCAAAAAGTA 57.393 25.926 0.00 0.00 43.44 2.24
6568 7319 9.606631 ACTAACCATTAACTTTGCATTTCAAAA 57.393 25.926 0.00 0.00 43.44 2.44
6571 7322 8.851145 TGTACTAACCATTAACTTTGCATTTCA 58.149 29.630 0.00 0.00 0.00 2.69
6572 7323 9.685828 TTGTACTAACCATTAACTTTGCATTTC 57.314 29.630 0.00 0.00 0.00 2.17
6574 7325 9.691362 CTTTGTACTAACCATTAACTTTGCATT 57.309 29.630 0.00 0.00 0.00 3.56
6638 7398 4.568152 TGCACTTTTCTGCCTTTTCTAC 57.432 40.909 0.00 0.00 36.21 2.59
6703 7464 3.149981 CTCCCTCTGGTGTTTTCTTTCC 58.850 50.000 0.00 0.00 0.00 3.13
6706 7467 2.136026 ACCTCCCTCTGGTGTTTTCTT 58.864 47.619 0.00 0.00 36.30 2.52
6715 7476 3.652581 GGTTCAAACCTCCCTCTGG 57.347 57.895 4.63 0.00 45.75 3.86
6766 7530 9.959721 AGCCTAATGTTGTTTCTAATAGAAGAA 57.040 29.630 2.74 0.00 35.37 2.52
6803 7567 7.226325 CAGTGCCATGTTTTTCCATCTTTTTAA 59.774 33.333 0.00 0.00 0.00 1.52
6804 7568 6.705381 CAGTGCCATGTTTTTCCATCTTTTTA 59.295 34.615 0.00 0.00 0.00 1.52
6805 7569 5.528320 CAGTGCCATGTTTTTCCATCTTTTT 59.472 36.000 0.00 0.00 0.00 1.94
6806 7570 5.058490 CAGTGCCATGTTTTTCCATCTTTT 58.942 37.500 0.00 0.00 0.00 2.27
6807 7571 4.101430 ACAGTGCCATGTTTTTCCATCTTT 59.899 37.500 0.00 0.00 0.00 2.52
6808 7572 3.642848 ACAGTGCCATGTTTTTCCATCTT 59.357 39.130 0.00 0.00 0.00 2.40
6809 7573 3.233507 ACAGTGCCATGTTTTTCCATCT 58.766 40.909 0.00 0.00 0.00 2.90
6810 7574 3.665745 ACAGTGCCATGTTTTTCCATC 57.334 42.857 0.00 0.00 0.00 3.51
6811 7575 3.387374 TCAACAGTGCCATGTTTTTCCAT 59.613 39.130 1.14 0.00 41.41 3.41
6812 7576 2.762887 TCAACAGTGCCATGTTTTTCCA 59.237 40.909 1.14 0.00 41.41 3.53
6813 7577 3.451141 TCAACAGTGCCATGTTTTTCC 57.549 42.857 1.14 0.00 41.41 3.13
6814 7578 5.048083 TCCTATCAACAGTGCCATGTTTTTC 60.048 40.000 1.14 0.00 41.41 2.29
6815 7579 4.832266 TCCTATCAACAGTGCCATGTTTTT 59.168 37.500 1.14 0.00 41.41 1.94
6822 7586 0.391130 GCGTCCTATCAACAGTGCCA 60.391 55.000 0.00 0.00 0.00 4.92
6823 7587 0.391130 TGCGTCCTATCAACAGTGCC 60.391 55.000 0.00 0.00 0.00 5.01
6824 7588 1.328680 CATGCGTCCTATCAACAGTGC 59.671 52.381 0.00 0.00 0.00 4.40
6828 7592 0.541392 AGGCATGCGTCCTATCAACA 59.459 50.000 12.44 0.00 30.79 3.33
6831 7595 1.123077 AAGAGGCATGCGTCCTATCA 58.877 50.000 31.05 0.00 33.24 2.15
6858 7622 0.824759 AGGATCACGGTTGTAGCTCC 59.175 55.000 0.00 0.00 0.00 4.70
6859 7623 2.034812 CCTAGGATCACGGTTGTAGCTC 59.965 54.545 1.05 0.00 0.00 4.09
6860 7624 2.032620 CCTAGGATCACGGTTGTAGCT 58.967 52.381 1.05 0.00 0.00 3.32
6861 7625 1.755380 ACCTAGGATCACGGTTGTAGC 59.245 52.381 17.98 0.00 0.00 3.58
6862 7626 2.758979 ACACCTAGGATCACGGTTGTAG 59.241 50.000 17.98 0.00 0.00 2.74
6863 7627 2.811410 ACACCTAGGATCACGGTTGTA 58.189 47.619 17.98 0.00 0.00 2.41
6865 7629 2.289444 ACAACACCTAGGATCACGGTTG 60.289 50.000 17.98 18.94 39.82 3.77
6869 7633 1.201647 ACGACAACACCTAGGATCACG 59.798 52.381 17.98 14.63 0.00 4.35
6877 7641 7.156000 TGATTCATTAAAGACGACAACACCTA 58.844 34.615 0.00 0.00 0.00 3.08
6881 7645 6.565060 CGGTTGATTCATTAAAGACGACAACA 60.565 38.462 17.28 0.00 37.43 3.33
6884 7648 4.992319 ACGGTTGATTCATTAAAGACGACA 59.008 37.500 0.00 0.00 0.00 4.35
6888 7652 8.742554 ATTGAAACGGTTGATTCATTAAAGAC 57.257 30.769 0.00 0.00 36.85 3.01
6892 7656 6.318628 CGGATTGAAACGGTTGATTCATTAA 58.681 36.000 0.00 0.00 36.85 1.40
6893 7657 5.163703 CCGGATTGAAACGGTTGATTCATTA 60.164 40.000 0.00 0.00 44.85 1.90
6894 7658 4.380444 CCGGATTGAAACGGTTGATTCATT 60.380 41.667 0.00 0.00 44.85 2.57
6895 7659 3.128589 CCGGATTGAAACGGTTGATTCAT 59.871 43.478 0.00 0.00 44.85 2.57
6896 7660 2.486203 CCGGATTGAAACGGTTGATTCA 59.514 45.455 0.00 0.00 44.85 2.57
6906 7670 3.245519 GCGATAGAGTTCCGGATTGAAAC 59.754 47.826 4.15 0.00 39.76 2.78
6910 7674 1.784525 GGCGATAGAGTTCCGGATTG 58.215 55.000 4.15 0.00 39.76 2.67
6914 7678 1.283181 CTCGGCGATAGAGTTCCGG 59.717 63.158 11.27 0.00 41.98 5.14
6915 7679 2.023318 ACTCGGCGATAGAGTTCCG 58.977 57.895 11.27 0.00 45.74 4.30
6956 7720 9.295825 ACACATGATGTCCTTTTTGTATCTTTA 57.704 29.630 0.00 0.00 36.54 1.85
6957 7721 8.181904 ACACATGATGTCCTTTTTGTATCTTT 57.818 30.769 0.00 0.00 36.54 2.52
6983 7747 5.404466 TGTTTTCCCTTCATAATTGCTGG 57.596 39.130 0.00 0.00 0.00 4.85
7060 7824 9.178758 GGAGAGATTTCTATGTGTATGGTTTTT 57.821 33.333 0.00 0.00 32.53 1.94
7076 7840 1.502163 CCGCGGCATGGAGAGATTTC 61.502 60.000 14.67 0.00 0.00 2.17
7077 7841 1.524621 CCGCGGCATGGAGAGATTT 60.525 57.895 14.67 0.00 0.00 2.17
7079 7843 3.157217 GACCGCGGCATGGAGAGAT 62.157 63.158 28.58 0.00 0.00 2.75
7081 7845 3.842923 AGACCGCGGCATGGAGAG 61.843 66.667 28.58 0.00 0.00 3.20
7082 7846 4.147449 CAGACCGCGGCATGGAGA 62.147 66.667 28.58 0.00 0.00 3.71
7083 7847 3.451556 ATCAGACCGCGGCATGGAG 62.452 63.158 28.58 9.76 0.00 3.86
7084 7848 3.469970 ATCAGACCGCGGCATGGA 61.470 61.111 28.58 18.37 0.00 3.41
7085 7849 2.642996 TACATCAGACCGCGGCATGG 62.643 60.000 28.58 13.00 0.00 3.66
7086 7850 1.227234 TACATCAGACCGCGGCATG 60.227 57.895 28.58 24.12 0.00 4.06
7087 7851 1.227263 GTACATCAGACCGCGGCAT 60.227 57.895 28.58 11.77 0.00 4.40
7088 7852 2.183300 GTACATCAGACCGCGGCA 59.817 61.111 28.58 7.17 0.00 5.69
7089 7853 2.954868 CGTACATCAGACCGCGGC 60.955 66.667 28.58 18.62 0.00 6.53
7090 7854 1.298413 CTCGTACATCAGACCGCGG 60.298 63.158 26.86 26.86 0.00 6.46
7091 7855 1.298413 CCTCGTACATCAGACCGCG 60.298 63.158 0.00 0.00 0.00 6.46
7092 7856 0.248539 GTCCTCGTACATCAGACCGC 60.249 60.000 0.00 0.00 0.00 5.68
7093 7857 1.092348 TGTCCTCGTACATCAGACCG 58.908 55.000 0.00 0.00 0.00 4.79
7094 7858 3.192844 TCTTTGTCCTCGTACATCAGACC 59.807 47.826 0.00 0.00 0.00 3.85
7095 7859 4.082679 ACTCTTTGTCCTCGTACATCAGAC 60.083 45.833 0.00 0.00 0.00 3.51
7106 7870 5.523369 CAAAATGTTCCACTCTTTGTCCTC 58.477 41.667 0.00 0.00 0.00 3.71
7117 7881 3.242706 GGCAAAACTGCAAAATGTTCCAC 60.243 43.478 0.00 0.00 36.33 4.02
7118 7882 2.941720 GGCAAAACTGCAAAATGTTCCA 59.058 40.909 0.00 0.00 36.33 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.