Multiple sequence alignment - TraesCS6D01G363800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G363800 chr6D 100.000 4555 0 0 829 5383 453958020 453953466 0.000000e+00 8412.0
1 TraesCS6D01G363800 chr6D 100.000 426 0 0 1 426 453958848 453958423 0.000000e+00 787.0
2 TraesCS6D01G363800 chr6D 95.082 61 3 0 3528 3588 453955234 453955174 4.440000e-16 97.1
3 TraesCS6D01G363800 chr6D 95.082 61 3 0 3615 3675 453955321 453955261 4.440000e-16 97.1
4 TraesCS6D01G363800 chr6D 86.842 76 1 4 3541 3612 453955264 453955194 5.780000e-10 76.8
5 TraesCS6D01G363800 chr6D 86.842 76 1 4 3585 3655 453955308 453955237 5.780000e-10 76.8
6 TraesCS6D01G363800 chr6A 94.922 2698 102 14 841 3526 600279492 600276818 0.000000e+00 4191.0
7 TraesCS6D01G363800 chr6A 90.703 1323 64 24 3585 4878 600276656 600275364 0.000000e+00 1707.0
8 TraesCS6D01G363800 chr6A 94.286 210 12 0 4191 4400 600127188 600126979 6.730000e-84 322.0
9 TraesCS6D01G363800 chr6A 96.296 189 7 0 4212 4400 600260728 600260916 1.460000e-80 311.0
10 TraesCS6D01G363800 chr6A 91.071 168 8 4 5151 5312 600120786 600120620 2.520000e-53 220.0
11 TraesCS6D01G363800 chr6A 92.701 137 7 3 3692 3827 600128022 600127888 1.530000e-45 195.0
12 TraesCS6D01G363800 chr6A 91.096 146 10 3 3683 3827 600259921 600260064 1.530000e-45 195.0
13 TraesCS6D01G363800 chr6A 79.762 252 18 18 4555 4785 600124167 600123928 9.340000e-33 152.0
14 TraesCS6D01G363800 chr6A 83.636 110 14 4 220 329 600280022 600279917 3.430000e-17 100.0
15 TraesCS6D01G363800 chr6A 91.803 61 5 0 3528 3588 600276626 600276566 9.610000e-13 86.1
16 TraesCS6D01G363800 chr6A 93.182 44 3 0 3616 3659 600276795 600276752 1.250000e-06 65.8
17 TraesCS6D01G363800 chr6A 95.122 41 2 0 3532 3572 600276792 600276752 1.250000e-06 65.8
18 TraesCS6D01G363800 chr6A 100.000 28 0 0 3585 3612 600276783 600276756 1.000000e-02 52.8
19 TraesCS6D01G363800 chr6B 92.594 2822 112 39 903 3655 689923259 689920466 0.000000e+00 3964.0
20 TraesCS6D01G363800 chr6B 91.010 1257 50 18 3541 4774 689920538 689919322 0.000000e+00 1637.0
21 TraesCS6D01G363800 chr6B 84.375 224 16 7 190 409 689923718 689923510 9.140000e-48 202.0
22 TraesCS6D01G363800 chr6B 87.037 162 12 4 4669 4830 689520479 689520327 1.990000e-39 174.0
23 TraesCS6D01G363800 chr6B 84.444 135 16 4 2659 2792 568867297 568867167 1.570000e-25 128.0
24 TraesCS6D01G363800 chr6B 84.444 135 16 4 2659 2792 568877881 568877751 1.570000e-25 128.0
25 TraesCS6D01G363800 chr6B 95.082 61 3 0 3528 3588 689920463 689920403 4.440000e-16 97.1
26 TraesCS6D01G363800 chr6B 84.211 76 3 5 3541 3612 689920493 689920423 1.250000e-06 65.8
27 TraesCS6D01G363800 chrUn 84.444 135 16 4 2659 2792 313936206 313936336 1.570000e-25 128.0
28 TraesCS6D01G363800 chrUn 84.444 135 16 4 2659 2792 313943683 313943813 1.570000e-25 128.0
29 TraesCS6D01G363800 chrUn 84.444 135 16 4 2659 2792 360885612 360885742 1.570000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G363800 chr6D 453953466 453958848 5382 True 1591.133333 8412 93.974667 1 5383 6 chr6D.!!$R1 5382
1 TraesCS6D01G363800 chr6A 600275364 600280022 4658 True 895.500000 4191 92.766857 220 4878 7 chr6A.!!$R2 4658
2 TraesCS6D01G363800 chr6A 600259921 600260916 995 False 253.000000 311 93.696000 3683 4400 2 chr6A.!!$F1 717
3 TraesCS6D01G363800 chr6A 600120620 600128022 7402 True 222.250000 322 89.455000 3692 5312 4 chr6A.!!$R1 1620
4 TraesCS6D01G363800 chr6B 689919322 689923718 4396 True 1193.180000 3964 89.454400 190 4774 5 chr6B.!!$R4 4584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.179124 CTAGACCAGGTCGCTCAAGC 60.179 60.000 14.32 0.0 37.67 4.01 F
1836 1860 1.153086 GGCGGATCTTGTGCCTCAT 60.153 57.895 10.29 0.0 45.40 2.90 F
2277 2301 0.036306 GAAAGGAGAAGGGCAACGGA 59.964 55.000 0.00 0.0 37.60 4.69 F
3690 3903 1.189752 AACAACAATGGCCACACACA 58.810 45.000 8.16 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1977 2001 0.691078 TCCCATTCTTCTCCTCCCCG 60.691 60.000 0.00 0.00 0.00 5.73 R
3056 3084 1.682323 GTCTACCGTTTTGGCCCAAAA 59.318 47.619 17.55 17.55 43.94 2.44 R
3881 4220 2.091830 CCCTCCCCTCTTTTGGTATTCC 60.092 54.545 0.00 0.00 0.00 3.01 R
4870 9238 0.100861 GTACAGGCTGTAGAGTCGGC 59.899 60.000 26.87 10.23 32.84 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.821991 CGAACCACCTTCAAGAGACT 57.178 50.000 0.00 0.00 0.00 3.24
20 21 2.408050 CGAACCACCTTCAAGAGACTG 58.592 52.381 0.00 0.00 0.00 3.51
21 22 2.035961 CGAACCACCTTCAAGAGACTGA 59.964 50.000 0.00 0.00 0.00 3.41
22 23 3.658709 GAACCACCTTCAAGAGACTGAG 58.341 50.000 0.00 0.00 0.00 3.35
23 24 2.964209 ACCACCTTCAAGAGACTGAGA 58.036 47.619 0.00 0.00 0.00 3.27
24 25 2.630580 ACCACCTTCAAGAGACTGAGAC 59.369 50.000 0.00 0.00 0.00 3.36
25 26 2.352225 CCACCTTCAAGAGACTGAGACG 60.352 54.545 0.00 0.00 0.00 4.18
26 27 1.889829 ACCTTCAAGAGACTGAGACGG 59.110 52.381 0.00 0.00 0.00 4.79
27 28 1.889829 CCTTCAAGAGACTGAGACGGT 59.110 52.381 0.00 0.00 0.00 4.83
28 29 3.082548 CCTTCAAGAGACTGAGACGGTA 58.917 50.000 0.00 0.00 0.00 4.02
29 30 3.506455 CCTTCAAGAGACTGAGACGGTAA 59.494 47.826 0.00 0.00 0.00 2.85
30 31 4.022242 CCTTCAAGAGACTGAGACGGTAAA 60.022 45.833 0.00 0.00 0.00 2.01
31 32 4.768130 TCAAGAGACTGAGACGGTAAAG 57.232 45.455 0.00 0.00 0.00 1.85
32 33 3.057456 TCAAGAGACTGAGACGGTAAAGC 60.057 47.826 0.00 0.00 0.00 3.51
33 34 2.515854 AGAGACTGAGACGGTAAAGCA 58.484 47.619 0.00 0.00 0.00 3.91
34 35 2.490115 AGAGACTGAGACGGTAAAGCAG 59.510 50.000 0.00 0.00 0.00 4.24
35 36 1.067495 AGACTGAGACGGTAAAGCAGC 60.067 52.381 0.00 0.00 0.00 5.25
56 57 4.889856 CGCCGGCGATGACCATCA 62.890 66.667 44.86 0.00 42.83 3.07
57 58 2.281070 GCCGGCGATGACCATCAT 60.281 61.111 12.58 0.00 40.34 2.45
72 73 3.664495 CATCGATGGATGGCAGGC 58.336 61.111 17.96 0.00 45.15 4.85
73 74 1.228033 CATCGATGGATGGCAGGCA 60.228 57.895 17.96 0.00 45.15 4.75
74 75 1.228063 ATCGATGGATGGCAGGCAC 60.228 57.895 0.00 0.00 0.00 5.01
75 76 3.274586 CGATGGATGGCAGGCACG 61.275 66.667 0.00 0.00 0.00 5.34
76 77 3.589881 GATGGATGGCAGGCACGC 61.590 66.667 0.00 0.00 0.00 5.34
77 78 4.119363 ATGGATGGCAGGCACGCT 62.119 61.111 0.00 0.00 0.00 5.07
80 81 3.058160 GATGGCAGGCACGCTGTT 61.058 61.111 0.00 0.00 0.00 3.16
81 82 1.745115 GATGGCAGGCACGCTGTTA 60.745 57.895 0.00 0.00 0.00 2.41
82 83 1.982073 GATGGCAGGCACGCTGTTAC 61.982 60.000 0.00 0.00 0.00 2.50
83 84 2.358737 GGCAGGCACGCTGTTACT 60.359 61.111 0.00 0.00 0.00 2.24
84 85 1.966451 GGCAGGCACGCTGTTACTT 60.966 57.895 0.00 0.00 0.00 2.24
85 86 1.207593 GCAGGCACGCTGTTACTTG 59.792 57.895 0.00 0.00 0.00 3.16
86 87 1.868997 CAGGCACGCTGTTACTTGG 59.131 57.895 0.00 0.00 0.00 3.61
87 88 1.966451 AGGCACGCTGTTACTTGGC 60.966 57.895 0.00 0.00 34.97 4.52
88 89 1.966451 GGCACGCTGTTACTTGGCT 60.966 57.895 0.00 0.00 32.45 4.75
89 90 1.497722 GCACGCTGTTACTTGGCTC 59.502 57.895 0.00 0.00 0.00 4.70
90 91 1.781555 CACGCTGTTACTTGGCTCG 59.218 57.895 0.00 0.00 0.00 5.03
91 92 2.027625 ACGCTGTTACTTGGCTCGC 61.028 57.895 0.00 0.00 0.00 5.03
92 93 2.027073 CGCTGTTACTTGGCTCGCA 61.027 57.895 0.00 0.00 0.00 5.10
93 94 1.565156 CGCTGTTACTTGGCTCGCAA 61.565 55.000 0.00 0.00 0.00 4.85
94 95 0.804989 GCTGTTACTTGGCTCGCAAT 59.195 50.000 0.00 0.00 0.00 3.56
95 96 1.202076 GCTGTTACTTGGCTCGCAATC 60.202 52.381 0.00 0.00 0.00 2.67
96 97 1.061131 CTGTTACTTGGCTCGCAATCG 59.939 52.381 0.00 0.00 0.00 3.34
97 98 1.076332 GTTACTTGGCTCGCAATCGT 58.924 50.000 0.00 0.00 36.96 3.73
98 99 1.463444 GTTACTTGGCTCGCAATCGTT 59.537 47.619 0.00 0.00 36.96 3.85
99 100 1.803334 TACTTGGCTCGCAATCGTTT 58.197 45.000 0.00 0.00 36.96 3.60
100 101 0.517316 ACTTGGCTCGCAATCGTTTC 59.483 50.000 0.00 0.00 36.96 2.78
101 102 0.519175 CTTGGCTCGCAATCGTTTCG 60.519 55.000 0.00 0.00 36.96 3.46
102 103 2.276680 GGCTCGCAATCGTTTCGC 60.277 61.111 0.00 0.00 36.96 4.70
103 104 2.474266 GCTCGCAATCGTTTCGCA 59.526 55.556 0.00 0.00 36.96 5.10
104 105 1.060937 GCTCGCAATCGTTTCGCAT 59.939 52.632 0.00 0.00 36.96 4.73
105 106 0.300491 GCTCGCAATCGTTTCGCATA 59.700 50.000 0.00 0.00 36.96 3.14
106 107 1.911709 GCTCGCAATCGTTTCGCATAC 60.912 52.381 0.00 0.00 36.96 2.39
107 108 1.323235 CTCGCAATCGTTTCGCATACA 59.677 47.619 0.00 0.00 36.96 2.29
108 109 1.727335 TCGCAATCGTTTCGCATACAA 59.273 42.857 0.00 0.00 36.96 2.41
109 110 2.157863 TCGCAATCGTTTCGCATACAAA 59.842 40.909 0.00 0.00 36.96 2.83
110 111 2.905546 CGCAATCGTTTCGCATACAAAA 59.094 40.909 0.00 0.00 0.00 2.44
111 112 3.240899 CGCAATCGTTTCGCATACAAAAC 60.241 43.478 0.00 0.00 33.12 2.43
136 137 9.688592 ACGATTATATATATAGCGGTAAAAGGC 57.311 33.333 21.19 0.00 0.00 4.35
137 138 9.136952 CGATTATATATATAGCGGTAAAAGGCC 57.863 37.037 14.48 0.00 0.00 5.19
143 144 2.125832 CGGTAAAAGGCCGCTCGA 60.126 61.111 0.00 0.00 42.82 4.04
144 145 1.520787 CGGTAAAAGGCCGCTCGAT 60.521 57.895 0.00 0.00 42.82 3.59
145 146 1.488261 CGGTAAAAGGCCGCTCGATC 61.488 60.000 0.00 0.00 42.82 3.69
146 147 1.488261 GGTAAAAGGCCGCTCGATCG 61.488 60.000 9.36 9.36 0.00 3.69
147 148 0.526954 GTAAAAGGCCGCTCGATCGA 60.527 55.000 18.32 18.32 0.00 3.59
148 149 0.387929 TAAAAGGCCGCTCGATCGAT 59.612 50.000 19.78 0.00 0.00 3.59
149 150 1.154205 AAAAGGCCGCTCGATCGATG 61.154 55.000 19.78 13.98 0.00 3.84
150 151 2.298158 AAAGGCCGCTCGATCGATGT 62.298 55.000 19.78 0.00 0.00 3.06
151 152 2.685387 AAGGCCGCTCGATCGATGTC 62.685 60.000 19.78 11.78 0.00 3.06
152 153 2.731348 GCCGCTCGATCGATGTCC 60.731 66.667 19.78 6.70 0.00 4.02
153 154 2.427575 CCGCTCGATCGATGTCCG 60.428 66.667 19.78 17.31 40.25 4.79
162 163 3.700577 TCGATGTCCGACGTTAACC 57.299 52.632 0.00 0.00 43.23 2.85
163 164 0.880441 TCGATGTCCGACGTTAACCA 59.120 50.000 0.00 0.00 43.23 3.67
164 165 0.986992 CGATGTCCGACGTTAACCAC 59.013 55.000 0.00 0.00 41.76 4.16
165 166 1.666599 CGATGTCCGACGTTAACCACA 60.667 52.381 0.00 0.00 41.76 4.17
166 167 1.723003 GATGTCCGACGTTAACCACAC 59.277 52.381 0.00 0.00 0.00 3.82
167 168 0.459078 TGTCCGACGTTAACCACACA 59.541 50.000 0.00 0.00 0.00 3.72
168 169 0.854705 GTCCGACGTTAACCACACAC 59.145 55.000 0.00 0.00 0.00 3.82
169 170 0.594540 TCCGACGTTAACCACACACG 60.595 55.000 0.00 0.00 39.86 4.49
170 171 1.199859 CGACGTTAACCACACACGC 59.800 57.895 0.00 0.00 37.44 5.34
171 172 1.199859 GACGTTAACCACACACGCG 59.800 57.895 3.53 3.53 37.44 6.01
172 173 2.127906 CGTTAACCACACACGCGC 60.128 61.111 5.73 0.00 0.00 6.86
173 174 2.872515 CGTTAACCACACACGCGCA 61.873 57.895 5.73 0.00 0.00 6.09
174 175 1.368374 GTTAACCACACACGCGCAC 60.368 57.895 5.73 0.00 0.00 5.34
175 176 1.814169 TTAACCACACACGCGCACA 60.814 52.632 5.73 0.00 0.00 4.57
176 177 2.037913 TTAACCACACACGCGCACAC 62.038 55.000 5.73 0.00 0.00 3.82
178 179 4.589700 CCACACACGCGCACACAC 62.590 66.667 5.73 0.00 0.00 3.82
179 180 3.858989 CACACACGCGCACACACA 61.859 61.111 5.73 0.00 0.00 3.72
180 181 3.860125 ACACACGCGCACACACAC 61.860 61.111 5.73 0.00 0.00 3.82
181 182 3.858989 CACACGCGCACACACACA 61.859 61.111 5.73 0.00 0.00 3.72
182 183 3.121676 ACACGCGCACACACACAA 61.122 55.556 5.73 0.00 0.00 3.33
183 184 2.351097 CACGCGCACACACACAAG 60.351 61.111 5.73 0.00 0.00 3.16
184 185 2.510464 ACGCGCACACACACAAGA 60.510 55.556 5.73 0.00 0.00 3.02
185 186 2.053116 CGCGCACACACACAAGAC 60.053 61.111 8.75 0.00 0.00 3.01
186 187 2.525248 CGCGCACACACACAAGACT 61.525 57.895 8.75 0.00 0.00 3.24
187 188 1.212455 CGCGCACACACACAAGACTA 61.212 55.000 8.75 0.00 0.00 2.59
188 189 0.508641 GCGCACACACACAAGACTAG 59.491 55.000 0.30 0.00 0.00 2.57
194 195 2.365617 ACACACACAAGACTAGACCAGG 59.634 50.000 0.00 0.00 0.00 4.45
201 202 0.328592 AGACTAGACCAGGTCGCTCA 59.671 55.000 14.32 0.33 37.67 4.26
203 204 1.133407 GACTAGACCAGGTCGCTCAAG 59.867 57.143 14.32 9.99 37.67 3.02
204 205 0.179124 CTAGACCAGGTCGCTCAAGC 60.179 60.000 14.32 0.00 37.67 4.01
207 208 2.743928 CCAGGTCGCTCAAGCCAC 60.744 66.667 0.00 0.00 37.91 5.01
209 210 1.302033 CAGGTCGCTCAAGCCACTT 60.302 57.895 0.00 0.00 37.91 3.16
213 214 2.979676 CGCTCAAGCCACTTGCCA 60.980 61.111 2.41 0.00 40.84 4.92
214 215 2.554636 CGCTCAAGCCACTTGCCAA 61.555 57.895 2.41 0.00 40.84 4.52
217 218 1.473080 GCTCAAGCCACTTGCCAAAAA 60.473 47.619 2.41 0.00 40.84 1.94
269 270 1.329171 CCACCCTGCAGAGAGAGAGG 61.329 65.000 17.39 8.42 0.00 3.69
314 315 4.175489 CTGGCTGCACTGCATCGC 62.175 66.667 3.64 5.42 38.13 4.58
338 339 3.210358 GACTGGATCGATCGAGGATTC 57.790 52.381 32.35 21.05 37.01 2.52
1020 1044 3.537874 GAGGACGCGGCCAGGTAT 61.538 66.667 36.60 12.91 0.00 2.73
1269 1293 2.887568 GACCTGCTCATGTCGGCG 60.888 66.667 0.00 0.00 0.00 6.46
1770 1794 2.821366 GTGGCTCATGAGGTGGCG 60.821 66.667 23.89 0.00 38.30 5.69
1836 1860 1.153086 GGCGGATCTTGTGCCTCAT 60.153 57.895 10.29 0.00 45.40 2.90
1869 1893 1.264045 GGCAGGAGAGGACTGAAGCT 61.264 60.000 0.00 0.00 38.20 3.74
1917 1941 6.992123 TGTATGATATGTTGAATGTCCTGGTC 59.008 38.462 0.00 0.00 0.00 4.02
2064 2088 2.355513 GGAGAGGAAGCAGCTTGATTCA 60.356 50.000 13.91 0.00 43.94 2.57
2094 2118 1.886422 GGAACCAGGAGGAGGAATCT 58.114 55.000 0.00 0.00 38.69 2.40
2106 2130 2.243810 GAGGAATCTGACGATAGGGCT 58.756 52.381 0.00 0.00 43.77 5.19
2277 2301 0.036306 GAAAGGAGAAGGGCAACGGA 59.964 55.000 0.00 0.00 37.60 4.69
2409 2433 2.652590 GATGAGCTGATCCCTTTGCTT 58.347 47.619 1.05 0.00 35.76 3.91
2618 2642 4.346129 CATGCTTATTCTTTCTCAACGGC 58.654 43.478 0.00 0.00 0.00 5.68
2628 2652 4.329545 TCAACGGCCTGGGTGCTC 62.330 66.667 0.00 0.00 0.00 4.26
2711 2735 3.788672 CCTTGCTGGGGTATCTGTC 57.211 57.895 0.00 0.00 0.00 3.51
2869 2897 2.083774 TCGCACCCAAGCTATCAAAAG 58.916 47.619 0.00 0.00 0.00 2.27
2913 2941 5.934625 ACTAACAAGGACACAATCATGAGAC 59.065 40.000 0.09 0.00 0.00 3.36
2952 2980 4.098349 TGCCTGCTTTGCTAGAAAATATGG 59.902 41.667 0.00 0.81 0.00 2.74
2996 3024 8.450578 TTCTCTACTTTCACAATGACAACAAT 57.549 30.769 0.00 0.00 0.00 2.71
3041 3069 7.067008 CCTTTTCTTTGAAGTTACTGGAGTCAA 59.933 37.037 0.00 0.00 0.00 3.18
3071 3099 5.335269 GGATTTTATTTTTGGGCCAAAACGG 60.335 40.000 37.12 0.00 42.02 4.44
3192 3223 9.725019 TTACCTGCTGATATAGAACATTATTGG 57.275 33.333 0.00 0.00 0.00 3.16
3310 3351 2.826428 TGCTCAACAGTCAGTCAGTTC 58.174 47.619 0.00 0.00 0.00 3.01
3313 3354 3.623060 GCTCAACAGTCAGTCAGTTCAAA 59.377 43.478 0.00 0.00 0.00 2.69
3318 3359 4.769688 ACAGTCAGTCAGTTCAAACATGA 58.230 39.130 0.00 0.00 0.00 3.07
3473 3545 4.760204 GCCAATACTAGAGGTTTGTGTTGT 59.240 41.667 0.00 0.00 33.88 3.32
3479 3551 5.930135 ACTAGAGGTTTGTGTTGTGATCTT 58.070 37.500 0.00 0.00 0.00 2.40
3624 3817 2.930950 ACAAGGCAACAGCTACTTGAA 58.069 42.857 16.23 0.00 42.07 2.69
3690 3903 1.189752 AACAACAATGGCCACACACA 58.810 45.000 8.16 0.00 0.00 3.72
3702 3915 6.161855 TGGCCACACACAATACATTTTTAA 57.838 33.333 0.00 0.00 0.00 1.52
3714 3927 8.652290 ACAATACATTTTTAACCTGGCCTTTTA 58.348 29.630 3.32 0.00 0.00 1.52
3785 3998 3.084039 TCCCATTTGCTTGTGTCTGATC 58.916 45.455 0.00 0.00 0.00 2.92
3786 3999 3.087031 CCCATTTGCTTGTGTCTGATCT 58.913 45.455 0.00 0.00 0.00 2.75
3814 4027 6.478512 TTTGGTAATCTTTTTGTGGAGCTT 57.521 33.333 0.00 0.00 0.00 3.74
3865 4078 5.422145 TGTATTTTCTACTTAAGGGTCGCC 58.578 41.667 7.53 0.00 0.00 5.54
3881 4220 0.450184 CGCCCTGGGTGTTTTATTCG 59.550 55.000 18.33 3.67 0.00 3.34
3902 4342 2.091830 GGAATACCAAAAGAGGGGAGGG 60.092 54.545 0.00 0.00 35.97 4.30
4070 4510 1.680735 CAGCCTCTAGATGAGTTCGCT 59.319 52.381 0.00 0.00 41.11 4.93
4400 5028 8.456904 TCGAGTAAAACAGTGTTACATCATAC 57.543 34.615 14.95 6.45 34.50 2.39
4401 5029 8.301720 TCGAGTAAAACAGTGTTACATCATACT 58.698 33.333 14.95 10.58 34.50 2.12
4402 5030 8.584600 CGAGTAAAACAGTGTTACATCATACTC 58.415 37.037 14.95 16.34 34.50 2.59
4403 5031 9.419297 GAGTAAAACAGTGTTACATCATACTCA 57.581 33.333 14.95 0.00 36.91 3.41
4404 5032 9.944376 AGTAAAACAGTGTTACATCATACTCAT 57.056 29.630 14.95 0.00 34.50 2.90
4500 7496 3.643978 GGCGCAGACGGATGATGC 61.644 66.667 10.83 0.00 40.57 3.91
4509 7505 3.129300 GGATGATGCCGTCCGAGA 58.871 61.111 0.00 0.00 38.59 4.04
4510 7506 1.300233 GGATGATGCCGTCCGAGAC 60.300 63.158 0.00 0.00 38.59 3.36
4511 7507 1.437573 GATGATGCCGTCCGAGACA 59.562 57.895 5.15 0.00 32.09 3.41
4512 7508 0.179111 GATGATGCCGTCCGAGACAA 60.179 55.000 5.15 0.00 32.09 3.18
4513 7509 0.460284 ATGATGCCGTCCGAGACAAC 60.460 55.000 5.15 0.00 32.09 3.32
4514 7510 2.126071 ATGCCGTCCGAGACAACG 60.126 61.111 5.15 0.00 38.58 4.10
4683 8049 1.658095 CGGCCTTGTTTGTTGTTGTTG 59.342 47.619 0.00 0.00 0.00 3.33
4684 8050 2.694213 GGCCTTGTTTGTTGTTGTTGT 58.306 42.857 0.00 0.00 0.00 3.32
4685 8051 3.070748 GGCCTTGTTTGTTGTTGTTGTT 58.929 40.909 0.00 0.00 0.00 2.83
4686 8052 3.120373 GGCCTTGTTTGTTGTTGTTGTTG 60.120 43.478 0.00 0.00 0.00 3.33
4687 8053 3.496507 GCCTTGTTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
4688 8054 4.024472 GCCTTGTTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
4739 8105 0.910088 GAGGGGGCTGTAGTGTTCCT 60.910 60.000 0.00 0.00 0.00 3.36
4776 8142 9.224267 GTATGAATACTTGGAATATGCAGTCAT 57.776 33.333 0.00 0.00 36.73 3.06
4802 8168 0.106708 TGTCTTGCAACGAGGAAGCT 59.893 50.000 0.00 0.00 44.51 3.74
4803 8169 0.793250 GTCTTGCAACGAGGAAGCTC 59.207 55.000 0.00 0.00 44.51 4.09
4805 8171 1.630244 CTTGCAACGAGGAAGCTCCG 61.630 60.000 0.00 0.00 42.75 4.63
4809 8175 0.458025 CAACGAGGAAGCTCCGTACC 60.458 60.000 0.00 0.00 42.75 3.34
4817 9180 0.392998 AAGCTCCGTACCCATGCTTG 60.393 55.000 8.56 0.00 41.61 4.01
4829 9197 5.294734 ACCCATGCTTGTTTCTTCAAATT 57.705 34.783 0.00 0.00 0.00 1.82
4834 9202 7.064966 CCCATGCTTGTTTCTTCAAATTTATCC 59.935 37.037 0.00 0.00 0.00 2.59
4844 9212 7.290857 TCTTCAAATTTATCCTCGTTTCTCG 57.709 36.000 0.00 0.00 41.41 4.04
4846 9214 6.642683 TCAAATTTATCCTCGTTTCTCGTC 57.357 37.500 0.00 0.00 40.80 4.20
4847 9215 6.395629 TCAAATTTATCCTCGTTTCTCGTCT 58.604 36.000 0.00 0.00 40.80 4.18
4849 9217 3.777465 TTATCCTCGTTTCTCGTCTGG 57.223 47.619 0.00 0.00 40.80 3.86
4851 9219 1.176619 TCCTCGTTTCTCGTCTGGCA 61.177 55.000 0.00 0.00 40.80 4.92
4861 9229 3.186909 TCTCGTCTGGCATATTGTTTCG 58.813 45.455 0.00 0.00 0.00 3.46
4862 9230 1.663643 TCGTCTGGCATATTGTTTCGC 59.336 47.619 0.00 0.00 0.00 4.70
4863 9231 1.665679 CGTCTGGCATATTGTTTCGCT 59.334 47.619 0.00 0.00 0.00 4.93
4866 9234 3.313526 GTCTGGCATATTGTTTCGCTCAT 59.686 43.478 0.00 0.00 0.00 2.90
4868 9236 4.035558 TCTGGCATATTGTTTCGCTCATTC 59.964 41.667 0.00 0.00 0.00 2.67
4870 9238 4.201940 TGGCATATTGTTTCGCTCATTCTG 60.202 41.667 0.00 0.00 0.00 3.02
4871 9239 3.727723 GCATATTGTTTCGCTCATTCTGC 59.272 43.478 0.00 0.00 0.00 4.26
4872 9240 2.927553 ATTGTTTCGCTCATTCTGCC 57.072 45.000 0.00 0.00 0.00 4.85
4873 9241 0.516877 TTGTTTCGCTCATTCTGCCG 59.483 50.000 0.00 0.00 0.00 5.69
4875 9243 0.095417 GTTTCGCTCATTCTGCCGAC 59.905 55.000 0.00 0.00 0.00 4.79
4876 9244 0.037326 TTTCGCTCATTCTGCCGACT 60.037 50.000 0.00 0.00 0.00 4.18
4877 9245 0.458543 TTCGCTCATTCTGCCGACTC 60.459 55.000 0.00 0.00 0.00 3.36
4878 9246 1.140589 CGCTCATTCTGCCGACTCT 59.859 57.895 0.00 0.00 0.00 3.24
4880 9248 1.846541 GCTCATTCTGCCGACTCTAC 58.153 55.000 0.00 0.00 0.00 2.59
4882 9250 2.797792 GCTCATTCTGCCGACTCTACAG 60.798 54.545 0.00 0.00 0.00 2.74
4884 9252 0.461961 ATTCTGCCGACTCTACAGCC 59.538 55.000 0.00 0.00 0.00 4.85
4885 9253 0.612174 TTCTGCCGACTCTACAGCCT 60.612 55.000 0.00 0.00 0.00 4.58
4889 9257 0.100861 GCCGACTCTACAGCCTGTAC 59.899 60.000 0.00 0.00 0.00 2.90
4891 9259 2.915349 CCGACTCTACAGCCTGTACTA 58.085 52.381 0.00 0.00 0.00 1.82
4893 9261 3.533547 CGACTCTACAGCCTGTACTACT 58.466 50.000 0.00 0.00 0.00 2.57
4895 9263 3.018149 ACTCTACAGCCTGTACTACTGC 58.982 50.000 0.00 0.63 34.72 4.40
4896 9264 3.017442 CTCTACAGCCTGTACTACTGCA 58.983 50.000 0.00 0.00 34.72 4.41
4897 9265 3.632333 TCTACAGCCTGTACTACTGCAT 58.368 45.455 0.00 0.00 34.72 3.96
4898 9266 2.969628 ACAGCCTGTACTACTGCATC 57.030 50.000 0.00 0.00 34.72 3.91
4899 9267 2.179427 ACAGCCTGTACTACTGCATCA 58.821 47.619 0.00 0.00 34.72 3.07
4900 9268 2.093973 ACAGCCTGTACTACTGCATCAC 60.094 50.000 0.00 0.00 34.72 3.06
4901 9269 2.167281 CAGCCTGTACTACTGCATCACT 59.833 50.000 0.00 0.00 0.00 3.41
4903 9271 3.381908 AGCCTGTACTACTGCATCACTAC 59.618 47.826 0.00 0.00 0.00 2.73
4905 9273 4.734989 GCCTGTACTACTGCATCACTACTG 60.735 50.000 0.00 0.00 0.00 2.74
4906 9274 4.355437 CTGTACTACTGCATCACTACTGC 58.645 47.826 0.00 0.00 40.10 4.40
4907 9275 2.969628 ACTACTGCATCACTACTGCC 57.030 50.000 0.00 0.00 38.89 4.85
4908 9276 2.461695 ACTACTGCATCACTACTGCCT 58.538 47.619 0.00 0.00 38.89 4.75
4911 9279 1.338484 ACTGCATCACTACTGCCTGTG 60.338 52.381 0.00 0.00 38.89 3.66
4917 9285 3.769739 TCACTACTGCCTGTGATGTTT 57.230 42.857 0.00 0.00 38.15 2.83
4918 9286 4.882842 TCACTACTGCCTGTGATGTTTA 57.117 40.909 0.00 0.00 38.15 2.01
4919 9287 5.222079 TCACTACTGCCTGTGATGTTTAA 57.778 39.130 0.00 0.00 38.15 1.52
4920 9288 5.804639 TCACTACTGCCTGTGATGTTTAAT 58.195 37.500 0.00 0.00 38.15 1.40
4921 9289 6.237901 TCACTACTGCCTGTGATGTTTAATT 58.762 36.000 0.00 0.00 38.15 1.40
4922 9290 6.371548 TCACTACTGCCTGTGATGTTTAATTC 59.628 38.462 0.00 0.00 38.15 2.17
4923 9291 4.685169 ACTGCCTGTGATGTTTAATTCG 57.315 40.909 0.00 0.00 0.00 3.34
4924 9292 4.072131 ACTGCCTGTGATGTTTAATTCGT 58.928 39.130 0.00 0.00 0.00 3.85
4925 9293 4.518970 ACTGCCTGTGATGTTTAATTCGTT 59.481 37.500 0.00 0.00 0.00 3.85
4926 9294 5.041951 TGCCTGTGATGTTTAATTCGTTC 57.958 39.130 0.00 0.00 0.00 3.95
4927 9295 4.759693 TGCCTGTGATGTTTAATTCGTTCT 59.240 37.500 0.00 0.00 0.00 3.01
4928 9296 5.088739 GCCTGTGATGTTTAATTCGTTCTG 58.911 41.667 0.00 0.00 0.00 3.02
4929 9297 5.334879 GCCTGTGATGTTTAATTCGTTCTGT 60.335 40.000 0.00 0.00 0.00 3.41
4930 9298 6.668323 CCTGTGATGTTTAATTCGTTCTGTT 58.332 36.000 0.00 0.00 0.00 3.16
4931 9299 6.578545 CCTGTGATGTTTAATTCGTTCTGTTG 59.421 38.462 0.00 0.00 0.00 3.33
4933 9301 7.870826 TGTGATGTTTAATTCGTTCTGTTGAT 58.129 30.769 0.00 0.00 0.00 2.57
4935 9303 8.840867 GTGATGTTTAATTCGTTCTGTTGATTC 58.159 33.333 0.00 0.00 0.00 2.52
4940 9308 9.530129 GTTTAATTCGTTCTGTTGATTCTACAG 57.470 33.333 18.50 18.50 43.41 2.74
4941 9309 8.827177 TTAATTCGTTCTGTTGATTCTACAGT 57.173 30.769 22.02 8.59 42.77 3.55
4942 9310 6.952935 ATTCGTTCTGTTGATTCTACAGTC 57.047 37.500 22.02 16.46 42.77 3.51
4945 9313 5.009710 TCGTTCTGTTGATTCTACAGTCTGT 59.990 40.000 22.02 10.99 42.77 3.41
4947 9315 6.305877 CGTTCTGTTGATTCTACAGTCTGTAC 59.694 42.308 22.02 14.20 42.77 2.90
4949 9317 7.468141 TCTGTTGATTCTACAGTCTGTACAT 57.532 36.000 22.02 4.37 42.77 2.29
4950 9318 7.539436 TCTGTTGATTCTACAGTCTGTACATC 58.461 38.462 22.02 12.77 42.77 3.06
4952 9320 6.150474 TGTTGATTCTACAGTCTGTACATCGA 59.850 38.462 8.70 10.01 0.00 3.59
4953 9321 6.364945 TGATTCTACAGTCTGTACATCGAG 57.635 41.667 8.70 0.37 0.00 4.04
4954 9322 5.880887 TGATTCTACAGTCTGTACATCGAGT 59.119 40.000 8.70 2.15 0.00 4.18
4955 9323 5.798015 TTCTACAGTCTGTACATCGAGTC 57.202 43.478 8.70 0.00 0.00 3.36
4957 9325 5.110598 TCTACAGTCTGTACATCGAGTCTC 58.889 45.833 8.70 0.00 0.00 3.36
4958 9326 3.945346 ACAGTCTGTACATCGAGTCTCT 58.055 45.455 2.87 0.00 0.00 3.10
4959 9327 3.936453 ACAGTCTGTACATCGAGTCTCTC 59.064 47.826 2.87 0.00 0.00 3.20
4961 9329 4.270084 CAGTCTGTACATCGAGTCTCTCTC 59.730 50.000 0.00 0.00 39.62 3.20
4962 9330 4.161565 AGTCTGTACATCGAGTCTCTCTCT 59.838 45.833 0.00 0.00 40.75 3.10
4963 9331 4.506654 GTCTGTACATCGAGTCTCTCTCTC 59.493 50.000 0.00 0.00 40.75 3.20
4965 9333 5.595133 TCTGTACATCGAGTCTCTCTCTCTA 59.405 44.000 0.00 0.00 40.75 2.43
4966 9334 5.593968 TGTACATCGAGTCTCTCTCTCTAC 58.406 45.833 0.00 0.00 40.75 2.59
4967 9335 5.361571 TGTACATCGAGTCTCTCTCTCTACT 59.638 44.000 0.00 0.00 40.75 2.57
4969 9337 4.404394 ACATCGAGTCTCTCTCTCTACTGA 59.596 45.833 0.00 0.00 40.75 3.41
4971 9339 5.408880 TCGAGTCTCTCTCTCTACTGAAA 57.591 43.478 0.00 0.00 40.75 2.69
4972 9340 5.416083 TCGAGTCTCTCTCTCTACTGAAAG 58.584 45.833 0.00 0.00 40.75 2.62
4973 9341 5.186215 TCGAGTCTCTCTCTCTACTGAAAGA 59.814 44.000 0.00 0.00 40.75 2.52
5028 10237 3.808728 ACTATTGCGCCTGTGATGTTAT 58.191 40.909 4.18 0.00 0.00 1.89
5030 10239 2.106477 TTGCGCCTGTGATGTTATGA 57.894 45.000 4.18 0.00 0.00 2.15
5042 10251 2.264005 TGTTATGACGGCCTGTGTTT 57.736 45.000 0.00 0.00 0.00 2.83
5046 10255 1.238439 ATGACGGCCTGTGTTTTCAG 58.762 50.000 0.00 0.00 35.45 3.02
5049 10258 0.751643 ACGGCCTGTGTTTTCAGCTT 60.752 50.000 0.00 0.00 34.47 3.74
5051 10260 0.032540 GGCCTGTGTTTTCAGCTTGG 59.967 55.000 0.00 0.00 34.47 3.61
5059 10268 4.220821 TGTGTTTTCAGCTTGGGTTTGTAA 59.779 37.500 0.00 0.00 0.00 2.41
5076 11169 3.845178 TGTAATTACAGCTGACGAGTGG 58.155 45.455 23.35 0.00 0.00 4.00
5082 11175 0.965866 CAGCTGACGAGTGGGACCTA 60.966 60.000 8.42 0.00 0.00 3.08
5083 11176 0.966370 AGCTGACGAGTGGGACCTAC 60.966 60.000 0.00 0.00 0.00 3.18
5087 11180 2.879646 CTGACGAGTGGGACCTACTATC 59.120 54.545 10.99 11.91 0.00 2.08
5091 11184 4.287552 ACGAGTGGGACCTACTATCAATT 58.712 43.478 10.99 0.00 0.00 2.32
5093 11186 5.535406 ACGAGTGGGACCTACTATCAATTAG 59.465 44.000 10.99 0.00 0.00 1.73
5100 11193 5.242393 GGACCTACTATCAATTAGCACCGTA 59.758 44.000 0.00 0.00 0.00 4.02
5114 11207 1.010350 CCGTACGAGCGAGCGTATT 60.010 57.895 18.76 0.00 46.81 1.89
5115 11208 1.260198 CCGTACGAGCGAGCGTATTG 61.260 60.000 18.76 8.76 46.81 1.90
5116 11209 1.260198 CGTACGAGCGAGCGTATTGG 61.260 60.000 10.44 3.68 46.81 3.16
5118 11211 1.003545 GTACGAGCGAGCGTATTGGTA 60.004 52.381 12.22 0.00 46.81 3.25
5119 11212 0.248377 ACGAGCGAGCGTATTGGTAC 60.248 55.000 1.02 0.00 43.61 3.34
5133 11231 5.177881 CGTATTGGTACAAGTAGTTGTTGCA 59.822 40.000 20.60 0.73 45.00 4.08
5136 11234 2.349155 GGTACAAGTAGTTGTTGCACGC 60.349 50.000 20.60 4.86 45.00 5.34
5146 11244 1.297598 GTTGCACGCACACACACTC 60.298 57.895 0.00 0.00 0.00 3.51
5169 11317 1.681793 GCATCTGAAGCCCGAGTAGTA 59.318 52.381 0.00 0.00 0.00 1.82
5170 11318 2.544069 GCATCTGAAGCCCGAGTAGTAC 60.544 54.545 0.00 0.00 0.00 2.73
5174 11322 2.009774 TGAAGCCCGAGTAGTACGTAC 58.990 52.381 18.10 18.10 0.00 3.67
5175 11323 1.004504 GAAGCCCGAGTAGTACGTACG 60.005 57.143 19.49 15.01 36.66 3.67
5176 11324 0.175760 AGCCCGAGTAGTACGTACGA 59.824 55.000 24.41 12.33 36.66 3.43
5177 11325 1.202580 AGCCCGAGTAGTACGTACGAT 60.203 52.381 24.41 9.86 36.66 3.73
5224 11378 1.542547 GGACCGTTGGCTCTTTGAAGA 60.543 52.381 0.00 0.00 0.00 2.87
5262 11416 3.922171 TGCAAGGGAAAACAAAACCAT 57.078 38.095 0.00 0.00 0.00 3.55
5273 11427 3.404224 ACAAAACCATGCATGCATTGA 57.596 38.095 31.94 8.34 33.90 2.57
5297 11451 1.875009 TGCTTCAGCTCAGTTCAGTG 58.125 50.000 0.00 0.00 42.66 3.66
5312 11466 0.883833 CAGTGGTTGGACTTGGATGC 59.116 55.000 0.00 0.00 0.00 3.91
5313 11467 0.478072 AGTGGTTGGACTTGGATGCA 59.522 50.000 0.00 0.00 0.00 3.96
5314 11468 0.883833 GTGGTTGGACTTGGATGCAG 59.116 55.000 0.00 0.00 0.00 4.41
5315 11469 0.895100 TGGTTGGACTTGGATGCAGC 60.895 55.000 0.00 0.00 0.00 5.25
5316 11470 0.895100 GGTTGGACTTGGATGCAGCA 60.895 55.000 3.51 0.00 0.00 4.41
5317 11471 0.524862 GTTGGACTTGGATGCAGCAG 59.475 55.000 3.51 0.00 0.00 4.24
5318 11472 1.246056 TTGGACTTGGATGCAGCAGC 61.246 55.000 3.51 0.62 42.57 5.25
5319 11473 1.378250 GGACTTGGATGCAGCAGCT 60.378 57.895 11.16 0.00 42.74 4.24
5320 11474 0.107508 GGACTTGGATGCAGCAGCTA 60.108 55.000 11.16 0.23 42.74 3.32
5321 11475 1.297664 GACTTGGATGCAGCAGCTAG 58.702 55.000 11.16 10.77 42.74 3.42
5322 11476 0.747283 ACTTGGATGCAGCAGCTAGC 60.747 55.000 11.16 6.62 46.19 3.42
5334 11488 3.790437 GCTAGCCAGCCAGAGCCA 61.790 66.667 2.29 0.00 42.37 4.75
5335 11489 2.505006 CTAGCCAGCCAGAGCCAG 59.495 66.667 0.00 0.00 41.25 4.85
5336 11490 2.284921 TAGCCAGCCAGAGCCAGT 60.285 61.111 0.00 0.00 41.25 4.00
5337 11491 2.590391 CTAGCCAGCCAGAGCCAGTG 62.590 65.000 0.00 0.00 41.25 3.66
5338 11492 4.025858 GCCAGCCAGAGCCAGTGA 62.026 66.667 0.00 0.00 41.25 3.41
5339 11493 2.996395 CCAGCCAGAGCCAGTGAT 59.004 61.111 0.00 0.00 41.25 3.06
5340 11494 1.451567 CCAGCCAGAGCCAGTGATG 60.452 63.158 0.00 0.00 41.25 3.07
5341 11495 1.600638 CAGCCAGAGCCAGTGATGA 59.399 57.895 0.00 0.00 41.25 2.92
5342 11496 0.462225 CAGCCAGAGCCAGTGATGAG 60.462 60.000 0.00 0.00 41.25 2.90
5343 11497 1.153208 GCCAGAGCCAGTGATGAGG 60.153 63.158 0.00 0.00 0.00 3.86
5349 11503 3.895025 CCAGTGATGAGGCAACGG 58.105 61.111 0.00 0.00 46.39 4.44
5350 11504 1.746615 CCAGTGATGAGGCAACGGG 60.747 63.158 0.00 0.00 46.39 5.28
5351 11505 2.045926 AGTGATGAGGCAACGGGC 60.046 61.111 0.00 0.00 46.39 6.13
5360 11514 4.410400 GCAACGGGCTAGTGGGCT 62.410 66.667 0.00 0.00 40.25 5.19
5361 11515 3.026431 GCAACGGGCTAGTGGGCTA 62.026 63.158 0.00 0.00 40.25 3.93
5362 11516 1.153429 CAACGGGCTAGTGGGCTAC 60.153 63.158 0.00 0.00 40.65 3.58
5363 11517 2.718073 AACGGGCTAGTGGGCTACG 61.718 63.158 0.00 0.00 40.65 3.51
5364 11518 4.587189 CGGGCTAGTGGGCTACGC 62.587 72.222 0.00 0.00 40.65 4.42
5365 11519 3.155167 GGGCTAGTGGGCTACGCT 61.155 66.667 0.00 1.05 43.66 5.07
5366 11520 1.831286 GGGCTAGTGGGCTACGCTA 60.831 63.158 0.00 3.03 41.07 4.26
5367 11521 1.363080 GGCTAGTGGGCTACGCTAC 59.637 63.158 0.00 0.00 41.07 3.58
5368 11522 1.389609 GGCTAGTGGGCTACGCTACA 61.390 60.000 0.00 0.00 41.07 2.74
5369 11523 0.248949 GCTAGTGGGCTACGCTACAC 60.249 60.000 0.00 6.25 41.07 2.90
5370 11524 1.100510 CTAGTGGGCTACGCTACACA 58.899 55.000 13.45 0.00 41.07 3.72
5371 11525 0.813184 TAGTGGGCTACGCTACACAC 59.187 55.000 13.45 0.00 41.07 3.82
5372 11526 0.898789 AGTGGGCTACGCTACACACT 60.899 55.000 13.45 1.53 38.39 3.55
5373 11527 0.458025 GTGGGCTACGCTACACACTC 60.458 60.000 8.52 0.00 36.79 3.51
5374 11528 0.611062 TGGGCTACGCTACACACTCT 60.611 55.000 0.00 0.00 0.00 3.24
5375 11529 0.100861 GGGCTACGCTACACACTCTC 59.899 60.000 0.00 0.00 0.00 3.20
5376 11530 0.100861 GGCTACGCTACACACTCTCC 59.899 60.000 0.00 0.00 0.00 3.71
5377 11531 1.096416 GCTACGCTACACACTCTCCT 58.904 55.000 0.00 0.00 0.00 3.69
5378 11532 1.064357 GCTACGCTACACACTCTCCTC 59.936 57.143 0.00 0.00 0.00 3.71
5379 11533 2.634600 CTACGCTACACACTCTCCTCT 58.365 52.381 0.00 0.00 0.00 3.69
5380 11534 1.169577 ACGCTACACACTCTCCTCTG 58.830 55.000 0.00 0.00 0.00 3.35
5381 11535 0.453793 CGCTACACACTCTCCTCTGG 59.546 60.000 0.00 0.00 0.00 3.86
5382 11536 0.174617 GCTACACACTCTCCTCTGGC 59.825 60.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.322254 TCTCAGTCTCTTGAAGGTGGTTC 59.678 47.826 0.00 0.00 35.48 3.62
4 5 2.352225 CGTCTCAGTCTCTTGAAGGTGG 60.352 54.545 0.00 0.00 0.00 4.61
7 8 1.889829 ACCGTCTCAGTCTCTTGAAGG 59.110 52.381 0.00 0.00 0.00 3.46
8 9 4.768130 TTACCGTCTCAGTCTCTTGAAG 57.232 45.455 0.00 0.00 0.00 3.02
9 10 4.558898 GCTTTACCGTCTCAGTCTCTTGAA 60.559 45.833 0.00 0.00 0.00 2.69
10 11 3.057456 GCTTTACCGTCTCAGTCTCTTGA 60.057 47.826 0.00 0.00 0.00 3.02
11 12 3.246619 GCTTTACCGTCTCAGTCTCTTG 58.753 50.000 0.00 0.00 0.00 3.02
12 13 2.891580 TGCTTTACCGTCTCAGTCTCTT 59.108 45.455 0.00 0.00 0.00 2.85
13 14 2.490115 CTGCTTTACCGTCTCAGTCTCT 59.510 50.000 0.00 0.00 0.00 3.10
14 15 2.869897 CTGCTTTACCGTCTCAGTCTC 58.130 52.381 0.00 0.00 0.00 3.36
15 16 1.067495 GCTGCTTTACCGTCTCAGTCT 60.067 52.381 0.00 0.00 0.00 3.24
16 17 1.351153 GCTGCTTTACCGTCTCAGTC 58.649 55.000 0.00 0.00 0.00 3.51
17 18 0.388649 CGCTGCTTTACCGTCTCAGT 60.389 55.000 0.00 0.00 0.00 3.41
18 19 1.078759 CCGCTGCTTTACCGTCTCAG 61.079 60.000 0.00 0.00 0.00 3.35
19 20 1.080093 CCGCTGCTTTACCGTCTCA 60.080 57.895 0.00 0.00 0.00 3.27
20 21 1.810030 CCCGCTGCTTTACCGTCTC 60.810 63.158 0.00 0.00 0.00 3.36
21 22 2.264794 CCCGCTGCTTTACCGTCT 59.735 61.111 0.00 0.00 0.00 4.18
22 23 3.497031 GCCCGCTGCTTTACCGTC 61.497 66.667 0.00 0.00 36.87 4.79
39 40 4.889856 TGATGGTCATCGCCGGCG 62.890 66.667 42.13 42.13 40.63 6.46
40 41 2.281070 ATGATGGTCATCGCCGGC 60.281 61.111 19.07 19.07 40.63 6.13
41 42 3.957260 GATGATGGTCATCGCCGG 58.043 61.111 0.00 0.00 43.11 6.13
55 56 1.228033 TGCCTGCCATCCATCGATG 60.228 57.895 18.76 18.76 44.80 3.84
56 57 1.228063 GTGCCTGCCATCCATCGAT 60.228 57.895 0.00 0.00 0.00 3.59
57 58 2.190313 GTGCCTGCCATCCATCGA 59.810 61.111 0.00 0.00 0.00 3.59
58 59 3.274586 CGTGCCTGCCATCCATCG 61.275 66.667 0.00 0.00 0.00 3.84
59 60 3.589881 GCGTGCCTGCCATCCATC 61.590 66.667 0.00 0.00 0.00 3.51
60 61 4.119363 AGCGTGCCTGCCATCCAT 62.119 61.111 0.00 0.00 34.65 3.41
63 64 1.745115 TAACAGCGTGCCTGCCATC 60.745 57.895 0.00 0.00 45.78 3.51
64 65 2.040544 GTAACAGCGTGCCTGCCAT 61.041 57.895 0.00 0.00 45.78 4.40
65 66 2.668212 GTAACAGCGTGCCTGCCA 60.668 61.111 0.00 0.00 45.78 4.92
66 67 1.966451 AAGTAACAGCGTGCCTGCC 60.966 57.895 0.00 0.00 45.78 4.85
67 68 1.207593 CAAGTAACAGCGTGCCTGC 59.792 57.895 0.00 0.00 45.78 4.85
69 70 1.966451 GCCAAGTAACAGCGTGCCT 60.966 57.895 0.00 0.00 0.00 4.75
70 71 1.912371 GAGCCAAGTAACAGCGTGCC 61.912 60.000 0.00 0.00 0.00 5.01
71 72 1.497722 GAGCCAAGTAACAGCGTGC 59.502 57.895 0.00 0.00 0.00 5.34
72 73 1.781555 CGAGCCAAGTAACAGCGTG 59.218 57.895 0.00 0.00 0.00 5.34
73 74 2.027625 GCGAGCCAAGTAACAGCGT 61.028 57.895 0.00 0.00 0.00 5.07
74 75 1.565156 TTGCGAGCCAAGTAACAGCG 61.565 55.000 0.00 0.00 0.00 5.18
75 76 0.804989 ATTGCGAGCCAAGTAACAGC 59.195 50.000 0.00 0.00 36.76 4.40
76 77 1.061131 CGATTGCGAGCCAAGTAACAG 59.939 52.381 0.00 0.00 40.82 3.16
77 78 1.075542 CGATTGCGAGCCAAGTAACA 58.924 50.000 0.00 0.00 40.82 2.41
78 79 1.076332 ACGATTGCGAGCCAAGTAAC 58.924 50.000 0.00 0.00 41.64 2.50
79 80 1.803334 AACGATTGCGAGCCAAGTAA 58.197 45.000 0.00 0.00 41.64 2.24
80 81 1.730064 GAAACGATTGCGAGCCAAGTA 59.270 47.619 0.00 0.00 41.64 2.24
81 82 0.517316 GAAACGATTGCGAGCCAAGT 59.483 50.000 0.00 0.00 41.64 3.16
82 83 0.519175 CGAAACGATTGCGAGCCAAG 60.519 55.000 0.00 0.00 41.64 3.61
83 84 1.495509 CGAAACGATTGCGAGCCAA 59.504 52.632 0.00 0.00 41.64 4.52
84 85 3.022401 GCGAAACGATTGCGAGCCA 62.022 57.895 0.00 0.00 41.64 4.75
85 86 2.276680 GCGAAACGATTGCGAGCC 60.277 61.111 0.00 0.00 41.64 4.70
86 87 0.300491 TATGCGAAACGATTGCGAGC 59.700 50.000 0.00 0.00 41.64 5.03
87 88 1.323235 TGTATGCGAAACGATTGCGAG 59.677 47.619 0.00 0.00 41.64 5.03
88 89 1.351153 TGTATGCGAAACGATTGCGA 58.649 45.000 0.00 0.00 41.64 5.10
89 90 2.152237 TTGTATGCGAAACGATTGCG 57.848 45.000 0.00 0.00 44.79 4.85
90 91 4.212279 GTTTTGTATGCGAAACGATTGC 57.788 40.909 10.43 0.00 38.68 3.56
110 111 9.688592 GCCTTTTACCGCTATATATATAATCGT 57.311 33.333 16.42 9.91 0.00 3.73
111 112 9.136952 GGCCTTTTACCGCTATATATATAATCG 57.863 37.037 0.00 13.20 0.00 3.34
112 113 9.136952 CGGCCTTTTACCGCTATATATATAATC 57.863 37.037 0.00 0.00 44.90 1.75
127 128 1.488261 CGATCGAGCGGCCTTTTACC 61.488 60.000 16.65 0.00 0.00 2.85
128 129 0.526954 TCGATCGAGCGGCCTTTTAC 60.527 55.000 24.18 0.00 0.00 2.01
129 130 0.387929 ATCGATCGAGCGGCCTTTTA 59.612 50.000 24.18 1.41 0.00 1.52
130 131 1.144057 ATCGATCGAGCGGCCTTTT 59.856 52.632 24.18 0.00 0.00 2.27
131 132 1.592669 CATCGATCGAGCGGCCTTT 60.593 57.895 24.18 0.34 0.00 3.11
132 133 2.028190 CATCGATCGAGCGGCCTT 59.972 61.111 24.18 1.17 0.00 4.35
133 134 3.200887 GACATCGATCGAGCGGCCT 62.201 63.158 24.18 5.06 0.00 5.19
134 135 2.731348 GACATCGATCGAGCGGCC 60.731 66.667 24.18 6.22 0.00 6.13
135 136 2.731348 GGACATCGATCGAGCGGC 60.731 66.667 24.18 18.26 0.00 6.53
136 137 2.427575 CGGACATCGATCGAGCGG 60.428 66.667 24.18 16.82 42.43 5.52
137 138 2.631984 TCGGACATCGATCGAGCG 59.368 61.111 23.84 18.51 43.74 5.03
144 145 0.880441 TGGTTAACGTCGGACATCGA 59.120 50.000 9.10 0.00 46.77 3.59
145 146 0.986992 GTGGTTAACGTCGGACATCG 59.013 55.000 9.10 0.00 40.90 3.84
146 147 1.723003 GTGTGGTTAACGTCGGACATC 59.277 52.381 9.10 0.00 0.00 3.06
147 148 1.068895 TGTGTGGTTAACGTCGGACAT 59.931 47.619 9.10 0.00 0.00 3.06
148 149 0.459078 TGTGTGGTTAACGTCGGACA 59.541 50.000 9.10 0.00 0.00 4.02
149 150 0.854705 GTGTGTGGTTAACGTCGGAC 59.145 55.000 0.00 0.00 0.00 4.79
150 151 0.594540 CGTGTGTGGTTAACGTCGGA 60.595 55.000 0.00 0.00 32.79 4.55
151 152 1.847975 CGTGTGTGGTTAACGTCGG 59.152 57.895 0.00 0.00 32.79 4.79
152 153 1.199859 GCGTGTGTGGTTAACGTCG 59.800 57.895 0.00 0.00 39.45 5.12
153 154 1.199859 CGCGTGTGTGGTTAACGTC 59.800 57.895 0.00 0.00 39.45 4.34
154 155 2.873604 GCGCGTGTGTGGTTAACGT 61.874 57.895 8.43 0.00 39.45 3.99
155 156 2.127906 GCGCGTGTGTGGTTAACG 60.128 61.111 8.43 0.00 40.22 3.18
156 157 1.368374 GTGCGCGTGTGTGGTTAAC 60.368 57.895 8.43 0.00 0.00 2.01
157 158 1.814169 TGTGCGCGTGTGTGGTTAA 60.814 52.632 8.43 0.00 0.00 2.01
158 159 2.202892 TGTGCGCGTGTGTGGTTA 60.203 55.556 8.43 0.00 0.00 2.85
159 160 3.871574 GTGTGCGCGTGTGTGGTT 61.872 61.111 8.43 0.00 0.00 3.67
161 162 4.589700 GTGTGTGCGCGTGTGTGG 62.590 66.667 8.43 0.00 0.00 4.17
162 163 3.858989 TGTGTGTGCGCGTGTGTG 61.859 61.111 8.43 0.00 0.00 3.82
163 164 3.860125 GTGTGTGTGCGCGTGTGT 61.860 61.111 8.43 0.00 0.00 3.72
164 165 3.374087 TTGTGTGTGTGCGCGTGTG 62.374 57.895 8.43 0.00 0.00 3.82
165 166 3.094661 CTTGTGTGTGTGCGCGTGT 62.095 57.895 8.43 0.00 0.00 4.49
166 167 2.351097 CTTGTGTGTGTGCGCGTG 60.351 61.111 8.43 0.00 0.00 5.34
167 168 2.510464 TCTTGTGTGTGTGCGCGT 60.510 55.556 8.43 0.00 0.00 6.01
168 169 1.212455 TAGTCTTGTGTGTGTGCGCG 61.212 55.000 0.00 0.00 0.00 6.86
169 170 0.508641 CTAGTCTTGTGTGTGTGCGC 59.491 55.000 0.00 0.00 0.00 6.09
170 171 1.787155 GTCTAGTCTTGTGTGTGTGCG 59.213 52.381 0.00 0.00 0.00 5.34
171 172 2.135933 GGTCTAGTCTTGTGTGTGTGC 58.864 52.381 0.00 0.00 0.00 4.57
172 173 3.384668 CTGGTCTAGTCTTGTGTGTGTG 58.615 50.000 0.00 0.00 0.00 3.82
173 174 2.365617 CCTGGTCTAGTCTTGTGTGTGT 59.634 50.000 0.00 0.00 0.00 3.72
174 175 2.365617 ACCTGGTCTAGTCTTGTGTGTG 59.634 50.000 0.00 0.00 0.00 3.82
175 176 2.628657 GACCTGGTCTAGTCTTGTGTGT 59.371 50.000 19.53 0.00 0.00 3.72
176 177 2.351835 CGACCTGGTCTAGTCTTGTGTG 60.352 54.545 23.49 0.74 0.00 3.82
177 178 1.887198 CGACCTGGTCTAGTCTTGTGT 59.113 52.381 23.49 0.00 0.00 3.72
178 179 1.402984 GCGACCTGGTCTAGTCTTGTG 60.403 57.143 23.49 6.73 0.00 3.33
179 180 0.889306 GCGACCTGGTCTAGTCTTGT 59.111 55.000 23.49 0.00 0.00 3.16
180 181 1.133407 GAGCGACCTGGTCTAGTCTTG 59.867 57.143 23.49 8.12 41.93 3.02
181 182 1.271982 TGAGCGACCTGGTCTAGTCTT 60.272 52.381 23.49 3.69 45.46 3.01
182 183 0.328592 TGAGCGACCTGGTCTAGTCT 59.671 55.000 23.49 14.53 45.46 3.24
183 184 1.133407 CTTGAGCGACCTGGTCTAGTC 59.867 57.143 23.49 16.53 45.46 2.59
184 185 1.178276 CTTGAGCGACCTGGTCTAGT 58.822 55.000 23.49 8.55 45.46 2.57
185 186 0.179124 GCTTGAGCGACCTGGTCTAG 60.179 60.000 23.49 10.92 46.36 2.43
186 187 1.605058 GGCTTGAGCGACCTGGTCTA 61.605 60.000 23.49 5.68 45.46 2.59
187 188 2.659610 GCTTGAGCGACCTGGTCT 59.340 61.111 23.49 6.79 45.46 3.85
188 189 2.435059 GGCTTGAGCGACCTGGTC 60.435 66.667 16.99 16.99 45.46 4.02
217 218 4.932200 TGTTTTGCCGTGAGATTTGTTTTT 59.068 33.333 0.00 0.00 0.00 1.94
218 219 4.328712 GTGTTTTGCCGTGAGATTTGTTTT 59.671 37.500 0.00 0.00 0.00 2.43
227 228 1.008538 GCCAGTGTTTTGCCGTGAG 60.009 57.895 0.00 0.00 0.00 3.51
235 236 4.531426 TGGGGCCGCCAGTGTTTT 62.531 61.111 18.45 0.00 0.00 2.43
358 359 0.179158 GGAGAGAAGGAAGACGCGAC 60.179 60.000 15.93 6.86 0.00 5.19
901 925 2.958576 CTAGGCGAGGCGGATCTC 59.041 66.667 0.00 0.00 0.00 2.75
989 1013 3.414193 CCTCCATGGCTGGCTGGA 61.414 66.667 6.96 17.04 42.80 3.86
1125 1149 4.632458 GCGATCGACTCCGCCTCC 62.632 72.222 21.57 0.00 45.06 4.30
1770 1794 7.358435 CGATACATATTCGTCTTGGACATCAAC 60.358 40.741 0.00 0.00 32.09 3.18
1797 1821 1.820906 CGTGACGTCTATCCCGGGA 60.821 63.158 29.18 29.18 0.00 5.14
1833 1857 2.405805 CCGGCGCCAATTCACATGA 61.406 57.895 28.98 0.00 0.00 3.07
1869 1893 4.284550 GCCTTCCACTGCCCCACA 62.285 66.667 0.00 0.00 0.00 4.17
1977 2001 0.691078 TCCCATTCTTCTCCTCCCCG 60.691 60.000 0.00 0.00 0.00 5.73
2064 2088 2.852075 TGGTTCCCCCTCAACGCT 60.852 61.111 0.00 0.00 0.00 5.07
2094 2118 1.403814 CTTCCTCAGCCCTATCGTCA 58.596 55.000 0.00 0.00 0.00 4.35
2106 2130 0.771127 CCCCTTTGTCACCTTCCTCA 59.229 55.000 0.00 0.00 0.00 3.86
2277 2301 3.459969 AGACACCACCCTTCTTCTTCTTT 59.540 43.478 0.00 0.00 0.00 2.52
2409 2433 6.204688 CCTTCACTTTGTTTGCTAGTACATCA 59.795 38.462 0.00 0.00 0.00 3.07
2618 2642 2.674380 GGTTGCAGAGCACCCAGG 60.674 66.667 0.35 0.00 40.91 4.45
2628 2652 0.250124 TCCCACAGTAACGGTTGCAG 60.250 55.000 11.50 5.81 0.00 4.41
2869 2897 7.334421 TGTTAGTGCAAGATAAAGGATTCAGTC 59.666 37.037 0.00 0.00 0.00 3.51
2913 2941 2.084844 GCAGATGGTGAAGACTGCG 58.915 57.895 0.00 0.00 44.27 5.18
2971 2999 7.857734 TTGTTGTCATTGTGAAAGTAGAGAA 57.142 32.000 0.00 0.00 0.00 2.87
3041 3069 7.277405 TGGCCCAAAAATAAAATCCCTTATT 57.723 32.000 0.00 0.00 33.78 1.40
3056 3084 1.682323 GTCTACCGTTTTGGCCCAAAA 59.318 47.619 17.55 17.55 43.94 2.44
3071 3099 5.277058 GCTGCATGTTATAAGCTGTGTCTAC 60.277 44.000 0.00 0.00 32.82 2.59
3129 3157 8.874745 AATAAAAAGAAACGTCGTCATGTATG 57.125 30.769 0.00 0.00 0.00 2.39
3132 3160 8.007716 CAGTAATAAAAAGAAACGTCGTCATGT 58.992 33.333 0.00 0.00 0.00 3.21
3133 3161 7.006210 GCAGTAATAAAAAGAAACGTCGTCATG 59.994 37.037 0.00 0.00 0.00 3.07
3134 3162 7.013529 GCAGTAATAAAAAGAAACGTCGTCAT 58.986 34.615 0.00 0.00 0.00 3.06
3135 3163 6.018913 TGCAGTAATAAAAAGAAACGTCGTCA 60.019 34.615 0.00 0.00 0.00 4.35
3136 3164 6.357198 TGCAGTAATAAAAAGAAACGTCGTC 58.643 36.000 0.00 0.00 0.00 4.20
3137 3165 6.289745 TGCAGTAATAAAAAGAAACGTCGT 57.710 33.333 0.00 0.00 0.00 4.34
3138 3166 6.236941 GCATGCAGTAATAAAAAGAAACGTCG 60.237 38.462 14.21 0.00 0.00 5.12
3222 3253 3.964909 ACAGAAAAGATGTGGCGAAAAC 58.035 40.909 0.00 0.00 0.00 2.43
3227 3266 4.228912 AGAAAACAGAAAAGATGTGGCG 57.771 40.909 0.00 0.00 0.00 5.69
3310 3351 5.443185 ACAGGAATGTGAAGTCATGTTTG 57.557 39.130 0.00 0.00 35.37 2.93
3313 3354 4.717877 TCAACAGGAATGTGAAGTCATGT 58.282 39.130 0.00 0.00 40.27 3.21
3318 3359 5.652014 TGAAAACTCAACAGGAATGTGAAGT 59.348 36.000 0.00 0.00 0.00 3.01
3394 3436 4.287067 AGAACCAAGACTCAATTCCAGCTA 59.713 41.667 0.00 0.00 0.00 3.32
3396 3438 3.416156 AGAACCAAGACTCAATTCCAGC 58.584 45.455 0.00 0.00 0.00 4.85
3668 3861 3.006247 GTGTGTGGCCATTGTTGTTTTT 58.994 40.909 9.72 0.00 0.00 1.94
3690 3903 9.884636 GATAAAAGGCCAGGTTAAAAATGTATT 57.115 29.630 5.01 0.00 0.00 1.89
3702 3915 2.310052 AGCTTGAGATAAAAGGCCAGGT 59.690 45.455 5.01 0.00 0.00 4.00
3785 3998 7.812648 TCCACAAAAAGATTACCAAATACGAG 58.187 34.615 0.00 0.00 0.00 4.18
3786 3999 7.574217 GCTCCACAAAAAGATTACCAAATACGA 60.574 37.037 0.00 0.00 0.00 3.43
3843 4056 5.980698 GGCGACCCTTAAGTAGAAAATAC 57.019 43.478 0.97 0.00 0.00 1.89
3865 4078 4.337274 GGTATTCCGAATAAAACACCCAGG 59.663 45.833 2.29 0.00 0.00 4.45
3881 4220 2.091830 CCCTCCCCTCTTTTGGTATTCC 60.092 54.545 0.00 0.00 0.00 3.01
3902 4342 6.368243 CAGAGTCTATCATACATGCACATTCC 59.632 42.308 0.00 0.00 0.00 3.01
4070 4510 3.324108 GGGCTCGTTGGTGGGGTA 61.324 66.667 0.00 0.00 0.00 3.69
4428 5358 6.293955 CGGCACCTAAATAAACATCTTATGGG 60.294 42.308 0.00 0.00 33.60 4.00
4479 7475 4.147449 CATCCGTCTGCGCCAGGA 62.147 66.667 4.18 8.93 37.17 3.86
4482 7478 2.202919 CATCATCCGTCTGCGCCA 60.203 61.111 4.18 0.00 36.67 5.69
4495 7491 1.080093 GTTGTCTCGGACGGCATCA 60.080 57.895 0.00 0.00 34.95 3.07
4531 7546 5.779241 AAATCCATCCTGTACTTTCCTCA 57.221 39.130 0.00 0.00 0.00 3.86
4683 8049 9.739786 CAAACACATCTTCTTTTAAACAACAAC 57.260 29.630 0.00 0.00 0.00 3.32
4684 8050 9.698309 TCAAACACATCTTCTTTTAAACAACAA 57.302 25.926 0.00 0.00 0.00 2.83
4685 8051 9.868277 ATCAAACACATCTTCTTTTAAACAACA 57.132 25.926 0.00 0.00 0.00 3.33
4688 8054 9.515020 GTCATCAAACACATCTTCTTTTAAACA 57.485 29.630 0.00 0.00 0.00 2.83
4739 8105 1.968493 GTATTCATACAGCGGGAGGGA 59.032 52.381 0.00 0.00 33.52 4.20
4782 8148 0.514691 GCTTCCTCGTTGCAAGACAG 59.485 55.000 0.00 0.00 0.00 3.51
4783 8149 0.106708 AGCTTCCTCGTTGCAAGACA 59.893 50.000 0.00 0.00 0.00 3.41
4784 8150 0.793250 GAGCTTCCTCGTTGCAAGAC 59.207 55.000 0.00 0.00 0.00 3.01
4802 8168 1.349688 AGAAACAAGCATGGGTACGGA 59.650 47.619 0.00 0.00 0.00 4.69
4803 8169 1.821216 AGAAACAAGCATGGGTACGG 58.179 50.000 0.00 0.00 0.00 4.02
4805 8171 4.846779 TTGAAGAAACAAGCATGGGTAC 57.153 40.909 0.00 0.00 0.00 3.34
4809 8175 7.820872 AGGATAAATTTGAAGAAACAAGCATGG 59.179 33.333 0.00 0.00 0.00 3.66
4817 9180 9.331106 GAGAAACGAGGATAAATTTGAAGAAAC 57.669 33.333 0.00 0.00 0.00 2.78
4829 9197 2.159282 GCCAGACGAGAAACGAGGATAA 60.159 50.000 0.00 0.00 45.77 1.75
4834 9202 2.561733 TATGCCAGACGAGAAACGAG 57.438 50.000 0.00 0.00 45.77 4.18
4844 9212 2.677836 TGAGCGAAACAATATGCCAGAC 59.322 45.455 0.00 0.00 0.00 3.51
4846 9214 3.976793 ATGAGCGAAACAATATGCCAG 57.023 42.857 0.00 0.00 0.00 4.85
4847 9215 3.947196 AGAATGAGCGAAACAATATGCCA 59.053 39.130 0.00 0.00 0.00 4.92
4849 9217 3.727723 GCAGAATGAGCGAAACAATATGC 59.272 43.478 0.00 0.00 39.69 3.14
4851 9219 3.002656 CGGCAGAATGAGCGAAACAATAT 59.997 43.478 0.00 0.00 39.69 1.28
4861 9229 1.135139 TGTAGAGTCGGCAGAATGAGC 59.865 52.381 0.00 0.00 39.69 4.26
4862 9230 2.797792 GCTGTAGAGTCGGCAGAATGAG 60.798 54.545 17.33 0.00 39.69 2.90
4863 9231 1.135139 GCTGTAGAGTCGGCAGAATGA 59.865 52.381 17.33 0.00 39.69 2.57
4866 9234 0.612174 AGGCTGTAGAGTCGGCAGAA 60.612 55.000 17.33 0.00 41.03 3.02
4868 9236 1.140589 CAGGCTGTAGAGTCGGCAG 59.859 63.158 6.28 11.15 41.03 4.85
4870 9238 0.100861 GTACAGGCTGTAGAGTCGGC 59.899 60.000 26.87 10.23 32.84 5.54
4871 9239 1.752683 AGTACAGGCTGTAGAGTCGG 58.247 55.000 26.87 0.00 32.84 4.79
4872 9240 3.310227 CAGTAGTACAGGCTGTAGAGTCG 59.690 52.174 26.87 12.35 32.84 4.18
4873 9241 3.065648 GCAGTAGTACAGGCTGTAGAGTC 59.934 52.174 26.87 15.24 32.84 3.36
4875 9243 3.017442 TGCAGTAGTACAGGCTGTAGAG 58.983 50.000 26.87 15.33 32.84 2.43
4876 9244 3.081710 TGCAGTAGTACAGGCTGTAGA 57.918 47.619 26.87 15.41 32.84 2.59
4877 9245 3.381590 TGATGCAGTAGTACAGGCTGTAG 59.618 47.826 26.87 15.81 32.84 2.74
4878 9246 3.130516 GTGATGCAGTAGTACAGGCTGTA 59.869 47.826 22.96 22.96 33.18 2.74
4880 9248 2.167281 AGTGATGCAGTAGTACAGGCTG 59.833 50.000 14.16 14.16 0.00 4.85
4882 9250 2.969628 AGTGATGCAGTAGTACAGGC 57.030 50.000 2.52 6.55 0.00 4.85
4884 9252 4.355437 GCAGTAGTGATGCAGTAGTACAG 58.645 47.826 16.05 11.18 43.31 2.74
4885 9253 3.130516 GGCAGTAGTGATGCAGTAGTACA 59.869 47.826 16.05 0.00 45.68 2.90
4889 9257 2.167281 ACAGGCAGTAGTGATGCAGTAG 59.833 50.000 0.42 0.00 45.68 2.57
4891 9259 0.979665 ACAGGCAGTAGTGATGCAGT 59.020 50.000 0.42 0.00 45.68 4.40
4893 9261 0.975887 TCACAGGCAGTAGTGATGCA 59.024 50.000 0.42 0.00 45.68 3.96
4898 9266 6.500684 AATTAAACATCACAGGCAGTAGTG 57.499 37.500 0.00 0.00 37.10 2.74
4899 9267 5.351465 CGAATTAAACATCACAGGCAGTAGT 59.649 40.000 0.00 0.00 0.00 2.73
4900 9268 5.351465 ACGAATTAAACATCACAGGCAGTAG 59.649 40.000 0.00 0.00 0.00 2.57
4901 9269 5.242434 ACGAATTAAACATCACAGGCAGTA 58.758 37.500 0.00 0.00 0.00 2.74
4903 9271 4.685169 ACGAATTAAACATCACAGGCAG 57.315 40.909 0.00 0.00 0.00 4.85
4905 9273 5.088739 CAGAACGAATTAAACATCACAGGC 58.911 41.667 0.00 0.00 0.00 4.85
4906 9274 6.241207 ACAGAACGAATTAAACATCACAGG 57.759 37.500 0.00 0.00 0.00 4.00
4907 9275 7.351981 TCAACAGAACGAATTAAACATCACAG 58.648 34.615 0.00 0.00 0.00 3.66
4908 9276 7.252965 TCAACAGAACGAATTAAACATCACA 57.747 32.000 0.00 0.00 0.00 3.58
4915 9283 9.268268 ACTGTAGAATCAACAGAACGAATTAAA 57.732 29.630 10.02 0.00 45.89 1.52
4916 9284 8.827177 ACTGTAGAATCAACAGAACGAATTAA 57.173 30.769 10.02 0.00 45.89 1.40
4917 9285 8.304596 AGACTGTAGAATCAACAGAACGAATTA 58.695 33.333 10.02 0.00 45.89 1.40
4918 9286 7.116948 CAGACTGTAGAATCAACAGAACGAATT 59.883 37.037 10.02 0.00 45.89 2.17
4919 9287 6.587990 CAGACTGTAGAATCAACAGAACGAAT 59.412 38.462 10.02 0.00 45.89 3.34
4920 9288 5.920840 CAGACTGTAGAATCAACAGAACGAA 59.079 40.000 10.02 0.00 45.89 3.85
4921 9289 5.009710 ACAGACTGTAGAATCAACAGAACGA 59.990 40.000 6.24 0.00 45.89 3.85
4922 9290 5.223382 ACAGACTGTAGAATCAACAGAACG 58.777 41.667 6.24 0.91 45.89 3.95
4923 9291 7.145985 TGTACAGACTGTAGAATCAACAGAAC 58.854 38.462 15.69 2.75 45.89 3.01
4924 9292 7.284919 TGTACAGACTGTAGAATCAACAGAA 57.715 36.000 15.69 0.00 45.89 3.02
4925 9293 6.894339 TGTACAGACTGTAGAATCAACAGA 57.106 37.500 15.69 0.00 45.89 3.41
4927 9295 6.150474 TCGATGTACAGACTGTAGAATCAACA 59.850 38.462 24.55 17.60 32.84 3.33
4928 9296 6.552629 TCGATGTACAGACTGTAGAATCAAC 58.447 40.000 24.55 14.93 32.84 3.18
4929 9297 6.374613 ACTCGATGTACAGACTGTAGAATCAA 59.625 38.462 24.55 14.20 32.84 2.57
4930 9298 5.880887 ACTCGATGTACAGACTGTAGAATCA 59.119 40.000 24.55 17.00 32.84 2.57
4931 9299 6.259167 AGACTCGATGTACAGACTGTAGAATC 59.741 42.308 15.69 18.11 32.84 2.52
4933 9301 5.489249 AGACTCGATGTACAGACTGTAGAA 58.511 41.667 15.69 7.86 32.84 2.10
4935 9303 5.113383 AGAGACTCGATGTACAGACTGTAG 58.887 45.833 15.69 7.36 32.84 2.74
4937 9305 3.936453 GAGAGACTCGATGTACAGACTGT 59.064 47.826 13.68 13.68 0.00 3.55
4938 9306 4.188462 AGAGAGACTCGATGTACAGACTG 58.812 47.826 0.33 0.00 35.36 3.51
4940 9308 4.789095 GAGAGAGACTCGATGTACAGAC 57.211 50.000 0.33 0.00 35.84 3.51
4952 9320 8.650143 AAAATCTTTCAGTAGAGAGAGAGACT 57.350 34.615 0.00 0.00 38.27 3.24
4993 10202 8.128582 CAGGCGCAATAGTAAAATTATCTTTCA 58.871 33.333 10.83 0.00 0.00 2.69
5012 10221 1.368641 GTCATAACATCACAGGCGCA 58.631 50.000 10.83 0.00 0.00 6.09
5013 10222 0.301687 CGTCATAACATCACAGGCGC 59.698 55.000 0.00 0.00 0.00 6.53
5014 10223 0.930310 CCGTCATAACATCACAGGCG 59.070 55.000 0.00 0.00 0.00 5.52
5016 10225 1.134401 AGGCCGTCATAACATCACAGG 60.134 52.381 0.00 0.00 0.00 4.00
5028 10237 1.444119 GCTGAAAACACAGGCCGTCA 61.444 55.000 0.00 0.00 38.22 4.35
5030 10239 0.751643 AAGCTGAAAACACAGGCCGT 60.752 50.000 0.00 0.00 38.22 5.68
5042 10251 5.278758 GCTGTAATTACAAACCCAAGCTGAA 60.279 40.000 18.55 0.00 35.50 3.02
5046 10255 4.217550 TCAGCTGTAATTACAAACCCAAGC 59.782 41.667 18.55 15.53 35.50 4.01
5049 10258 3.749088 CGTCAGCTGTAATTACAAACCCA 59.251 43.478 18.55 0.62 35.50 4.51
5051 10260 4.689345 ACTCGTCAGCTGTAATTACAAACC 59.311 41.667 18.55 10.26 35.50 3.27
5059 10268 1.204941 GTCCCACTCGTCAGCTGTAAT 59.795 52.381 14.67 0.00 0.00 1.89
5076 11169 4.038883 ACGGTGCTAATTGATAGTAGGTCC 59.961 45.833 0.00 0.00 33.87 4.46
5082 11175 4.792057 GCTCGTACGGTGCTAATTGATAGT 60.792 45.833 16.52 0.00 33.87 2.12
5083 11176 3.669122 GCTCGTACGGTGCTAATTGATAG 59.331 47.826 16.52 1.32 34.52 2.08
5087 11180 0.570734 CGCTCGTACGGTGCTAATTG 59.429 55.000 23.70 10.39 0.00 2.32
5091 11184 3.095911 CTCGCTCGTACGGTGCTA 58.904 61.111 23.70 16.07 0.00 3.49
5100 11193 0.248377 GTACCAATACGCTCGCTCGT 60.248 55.000 6.96 6.96 45.49 4.18
5114 11207 2.867368 CGTGCAACAACTACTTGTACCA 59.133 45.455 0.00 0.00 39.88 3.25
5115 11208 2.349155 GCGTGCAACAACTACTTGTACC 60.349 50.000 0.00 0.00 39.88 3.34
5116 11209 2.285756 TGCGTGCAACAACTACTTGTAC 59.714 45.455 0.00 0.00 39.88 2.90
5118 11211 1.063469 GTGCGTGCAACAACTACTTGT 59.937 47.619 0.00 0.00 42.81 3.16
5119 11212 1.063321 TGTGCGTGCAACAACTACTTG 59.937 47.619 0.00 0.00 35.74 3.16
5125 11223 1.154131 TGTGTGTGCGTGCAACAAC 60.154 52.632 0.00 0.00 35.74 3.32
5133 11231 2.658593 GCTCGAGTGTGTGTGCGT 60.659 61.111 15.13 0.00 0.00 5.24
5136 11234 1.066136 CAGATGCTCGAGTGTGTGTG 58.934 55.000 15.13 3.10 0.00 3.82
5169 11317 1.202110 CGAAGCCACTACATCGTACGT 60.202 52.381 16.05 0.00 0.00 3.57
5170 11318 1.463805 CGAAGCCACTACATCGTACG 58.536 55.000 9.53 9.53 0.00 3.67
5241 11395 3.922171 TGGTTTTGTTTTCCCTTGCAT 57.078 38.095 0.00 0.00 0.00 3.96
5244 11398 3.539604 TGCATGGTTTTGTTTTCCCTTG 58.460 40.909 0.00 0.00 0.00 3.61
5253 11407 3.404224 TCAATGCATGCATGGTTTTGT 57.596 38.095 32.79 13.35 36.68 2.83
5273 11427 3.682696 TGAACTGAGCTGAAGCATCAAT 58.317 40.909 4.90 0.00 45.16 2.57
5297 11451 0.895100 TGCTGCATCCAAGTCCAACC 60.895 55.000 0.00 0.00 0.00 3.77
5318 11472 2.365586 ACTGGCTCTGGCTGGCTAG 61.366 63.158 13.32 13.32 41.67 3.42
5319 11473 2.284921 ACTGGCTCTGGCTGGCTA 60.285 61.111 2.00 0.00 38.73 3.93
5320 11474 4.031129 CACTGGCTCTGGCTGGCT 62.031 66.667 2.00 0.00 38.73 4.75
5321 11475 3.341202 ATCACTGGCTCTGGCTGGC 62.341 63.158 0.00 0.00 38.73 4.85
5322 11476 1.451567 CATCACTGGCTCTGGCTGG 60.452 63.158 0.00 0.00 38.73 4.85
5323 11477 0.462225 CTCATCACTGGCTCTGGCTG 60.462 60.000 0.00 0.00 38.73 4.85
5324 11478 1.624479 CCTCATCACTGGCTCTGGCT 61.624 60.000 0.00 0.00 38.73 4.75
5325 11479 1.153208 CCTCATCACTGGCTCTGGC 60.153 63.158 0.00 0.00 37.82 4.85
5326 11480 1.153208 GCCTCATCACTGGCTCTGG 60.153 63.158 0.00 0.00 45.26 3.86
5327 11481 4.536316 GCCTCATCACTGGCTCTG 57.464 61.111 0.00 0.00 45.26 3.35
5332 11486 1.746615 CCCGTTGCCTCATCACTGG 60.747 63.158 0.00 0.00 0.00 4.00
5333 11487 2.401766 GCCCGTTGCCTCATCACTG 61.402 63.158 0.00 0.00 0.00 3.66
5334 11488 1.264749 TAGCCCGTTGCCTCATCACT 61.265 55.000 0.00 0.00 42.71 3.41
5335 11489 0.811616 CTAGCCCGTTGCCTCATCAC 60.812 60.000 0.00 0.00 42.71 3.06
5336 11490 1.264749 ACTAGCCCGTTGCCTCATCA 61.265 55.000 0.00 0.00 42.71 3.07
5337 11491 0.811616 CACTAGCCCGTTGCCTCATC 60.812 60.000 0.00 0.00 42.71 2.92
5338 11492 1.221840 CACTAGCCCGTTGCCTCAT 59.778 57.895 0.00 0.00 42.71 2.90
5339 11493 2.662596 CACTAGCCCGTTGCCTCA 59.337 61.111 0.00 0.00 42.71 3.86
5340 11494 2.125106 CCACTAGCCCGTTGCCTC 60.125 66.667 0.00 0.00 42.71 4.70
5341 11495 3.717294 CCCACTAGCCCGTTGCCT 61.717 66.667 0.00 0.00 42.71 4.75
5343 11497 3.026431 TAGCCCACTAGCCCGTTGC 62.026 63.158 0.00 0.00 41.71 4.17
5344 11498 1.153429 GTAGCCCACTAGCCCGTTG 60.153 63.158 0.00 0.00 0.00 4.10
5345 11499 2.718073 CGTAGCCCACTAGCCCGTT 61.718 63.158 0.00 0.00 0.00 4.44
5346 11500 3.145551 CGTAGCCCACTAGCCCGT 61.146 66.667 0.00 0.00 0.00 5.28
5359 11513 2.353269 CAGAGGAGAGTGTGTAGCGTAG 59.647 54.545 0.00 0.00 0.00 3.51
5360 11514 2.357075 CAGAGGAGAGTGTGTAGCGTA 58.643 52.381 0.00 0.00 0.00 4.42
5361 11515 1.169577 CAGAGGAGAGTGTGTAGCGT 58.830 55.000 0.00 0.00 0.00 5.07
5362 11516 0.453793 CCAGAGGAGAGTGTGTAGCG 59.546 60.000 0.00 0.00 0.00 4.26
5363 11517 0.174617 GCCAGAGGAGAGTGTGTAGC 59.825 60.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.