Multiple sequence alignment - TraesCS6D01G363600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G363600 chr6D 100.000 2455 0 0 1 2455 453939941 453942395 0.000000e+00 4534.0
1 TraesCS6D01G363600 chr6D 98.396 187 3 0 2269 2455 447913439 447913253 1.820000e-86 329.0
2 TraesCS6D01G363600 chr6A 90.767 1148 63 22 578 1706 599983145 599984268 0.000000e+00 1493.0
3 TraesCS6D01G363600 chr6A 90.062 1137 61 15 1 1088 600099552 600100685 0.000000e+00 1426.0
4 TraesCS6D01G363600 chr6A 87.234 470 37 13 1141 1600 600102793 600103249 4.680000e-142 514.0
5 TraesCS6D01G363600 chr6A 82.873 543 38 31 1720 2257 599984335 599984827 1.040000e-118 436.0
6 TraesCS6D01G363600 chr6A 95.154 227 11 0 1 227 599956467 599956693 2.320000e-95 359.0
7 TraesCS6D01G363600 chr6A 87.461 319 8 5 225 511 599978532 599978850 3.020000e-89 339.0
8 TraesCS6D01G363600 chr6A 86.624 157 16 4 1702 1857 600103426 600103578 4.200000e-38 169.0
9 TraesCS6D01G363600 chr6A 91.509 106 9 0 1600 1705 600103295 600103400 1.970000e-31 147.0
10 TraesCS6D01G363600 chr6A 97.436 39 0 1 1085 1123 600102761 600102798 5.670000e-07 65.8
11 TraesCS6D01G363600 chr6B 90.042 713 27 10 112 780 689290170 689290882 0.000000e+00 883.0
12 TraesCS6D01G363600 chr6B 86.607 672 30 27 968 1600 689290888 689291538 0.000000e+00 688.0
13 TraesCS6D01G363600 chr6B 81.752 411 36 21 1869 2262 689291817 689292205 8.530000e-80 307.0
14 TraesCS6D01G363600 chr6B 87.363 182 21 1 2275 2454 135935649 135935468 8.900000e-50 207.0
15 TraesCS6D01G363600 chr6B 87.156 109 11 2 1600 1705 689291586 689291694 1.190000e-23 121.0
16 TraesCS6D01G363600 chr1D 98.396 187 3 0 2269 2455 490039089 490038903 1.820000e-86 329.0
17 TraesCS6D01G363600 chr1D 90.857 175 15 1 2282 2455 255130287 255130113 1.470000e-57 233.0
18 TraesCS6D01G363600 chr1B 88.587 184 20 1 2272 2454 598373105 598372922 3.180000e-54 222.0
19 TraesCS6D01G363600 chr1B 87.500 184 22 1 2272 2454 598387789 598387606 6.880000e-51 211.0
20 TraesCS6D01G363600 chr1B 86.957 184 23 1 2272 2454 598403049 598402866 3.200000e-49 206.0
21 TraesCS6D01G363600 chr1B 86.486 185 22 3 2272 2454 598417823 598417640 1.490000e-47 200.0
22 TraesCS6D01G363600 chr7D 86.022 186 23 3 2272 2455 59928841 59929025 1.930000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G363600 chr6D 453939941 453942395 2454 False 4534.00 4534 100.00000 1 2455 1 chr6D.!!$F1 2454
1 TraesCS6D01G363600 chr6A 599983145 599984827 1682 False 964.50 1493 86.82000 578 2257 2 chr6A.!!$F3 1679
2 TraesCS6D01G363600 chr6A 600099552 600103578 4026 False 464.36 1426 90.57300 1 1857 5 chr6A.!!$F4 1856
3 TraesCS6D01G363600 chr6B 689290170 689292205 2035 False 499.75 883 86.38925 112 2262 4 chr6B.!!$F1 2150

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 198 0.175989 CGGCCACTAGGTTTCTCTCC 59.824 60.0 2.24 0.00 37.19 3.71 F
709 755 0.808125 AATAAATCTTGCCGCGCACA 59.192 45.0 8.75 1.01 38.71 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1126 3264 0.027586 GCACAACGCGAGAACAACTT 59.972 50.0 15.93 0.0 0.00 2.66 R
2275 4587 0.036306 AGCCGAGGACATCCGTTTTT 59.964 50.0 0.00 0.0 42.08 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.967779 GAGATAGGTCTCCTCCTTGGC 59.032 57.143 0.00 0.00 44.20 4.52
33 34 1.452833 GGTCTCCTCCTTGGCATGC 60.453 63.158 9.90 9.90 35.26 4.06
57 58 1.472662 CCGTCTTGGTCACCTCTGGT 61.473 60.000 0.00 0.00 35.62 4.00
59 60 1.048601 GTCTTGGTCACCTCTGGTCA 58.951 55.000 0.00 0.00 31.02 4.02
66 67 2.930562 ACCTCTGGTCAGCCCCAC 60.931 66.667 0.00 0.00 0.00 4.61
72 73 2.352805 GGTCAGCCCCACTCTTGG 59.647 66.667 0.00 0.00 43.50 3.61
78 79 2.045926 CCCCACTCTTGGCCTTCG 60.046 66.667 3.32 0.00 42.35 3.79
106 107 3.305744 GGCGGAGGAGATAGATTGAACTC 60.306 52.174 0.00 0.00 0.00 3.01
146 147 4.523173 ACGACTATCAACTCCTTGAACTCA 59.477 41.667 0.00 0.00 39.90 3.41
197 198 0.175989 CGGCCACTAGGTTTCTCTCC 59.824 60.000 2.24 0.00 37.19 3.71
260 261 6.701340 TGACATTGCACAAGACTAGTAATCT 58.299 36.000 0.00 0.00 0.00 2.40
346 378 6.553953 TGAATAGTGTAGTATGGCAAAGGA 57.446 37.500 0.00 0.00 0.00 3.36
432 473 7.923344 TCAGTAAGCATAGAAATAGAACTGAGC 59.077 37.037 0.00 0.00 36.75 4.26
704 750 5.095490 GCATGGTATAATAAATCTTGCCGC 58.905 41.667 0.00 0.00 0.00 6.53
709 755 0.808125 AATAAATCTTGCCGCGCACA 59.192 45.000 8.75 1.01 38.71 4.57
719 765 1.643292 CCGCGCACACATCCATAAG 59.357 57.895 8.75 0.00 0.00 1.73
823 877 5.600484 AGTGAGGGGTTTGTATCTCAGATAG 59.400 44.000 0.00 0.00 37.00 2.08
842 896 2.288666 AGTGCCATATGTAAACTGCCG 58.711 47.619 1.24 0.00 0.00 5.69
848 902 4.800914 GCCATATGTAAACTGCCGATCTCT 60.801 45.833 1.24 0.00 0.00 3.10
852 906 7.095607 CCATATGTAAACTGCCGATCTCTAAAC 60.096 40.741 1.24 0.00 0.00 2.01
962 1016 3.261897 TGCCTCTTAGGTTTGGAGAAGAG 59.738 47.826 3.95 3.95 42.96 2.85
963 1017 3.262151 GCCTCTTAGGTTTGGAGAAGAGT 59.738 47.826 9.07 0.00 42.16 3.24
965 1019 5.394773 GCCTCTTAGGTTTGGAGAAGAGTAG 60.395 48.000 9.07 0.00 42.16 2.57
966 1020 5.952947 CCTCTTAGGTTTGGAGAAGAGTAGA 59.047 44.000 9.07 0.00 42.16 2.59
1032 1088 1.079819 CCTGGTGTTCGTGATCGCT 60.080 57.895 4.48 0.00 36.96 4.93
1077 1133 2.081462 GTTGGGCAATGTAAGCGTACT 58.919 47.619 11.15 0.00 0.00 2.73
1078 1134 3.264104 GTTGGGCAATGTAAGCGTACTA 58.736 45.455 11.15 0.00 0.00 1.82
1079 1135 3.830744 TGGGCAATGTAAGCGTACTAT 57.169 42.857 11.15 0.92 0.00 2.12
1123 3261 9.624373 ATTCATTGTCCTATATAGATTGATGCC 57.376 33.333 11.53 0.00 0.00 4.40
1124 3262 7.568349 TCATTGTCCTATATAGATTGATGCCC 58.432 38.462 11.53 0.00 0.00 5.36
1125 3263 5.957771 TGTCCTATATAGATTGATGCCCC 57.042 43.478 11.53 0.00 0.00 5.80
1126 3264 5.349690 TGTCCTATATAGATTGATGCCCCA 58.650 41.667 11.53 0.00 0.00 4.96
1127 3265 5.790096 TGTCCTATATAGATTGATGCCCCAA 59.210 40.000 11.53 0.00 0.00 4.12
1139 3285 2.966309 GCCCCAAGTTGTTCTCGCG 61.966 63.158 0.00 0.00 0.00 5.87
1151 3297 1.459592 GTTCTCGCGTTGTGCACTAAT 59.540 47.619 19.41 0.00 46.97 1.73
1214 3370 1.298014 GGTCAGAGGAAGCCACCAG 59.702 63.158 0.00 0.00 0.00 4.00
1280 3436 1.154263 GTCGTCGTCGTCAAGGGAG 60.154 63.158 1.33 0.00 38.33 4.30
1281 3437 1.301953 TCGTCGTCGTCAAGGGAGA 60.302 57.895 1.33 0.00 38.33 3.71
1282 3438 1.134901 CGTCGTCGTCAAGGGAGAG 59.865 63.158 0.00 0.00 0.00 3.20
1283 3439 1.153997 GTCGTCGTCAAGGGAGAGC 60.154 63.158 0.00 0.00 0.00 4.09
1284 3440 1.303398 TCGTCGTCAAGGGAGAGCT 60.303 57.895 0.00 0.00 0.00 4.09
1285 3441 1.137825 CGTCGTCAAGGGAGAGCTC 59.862 63.158 5.27 5.27 0.00 4.09
1301 3457 1.555477 GCTCGAGCTCTAGCAAACTC 58.445 55.000 29.65 4.25 45.16 3.01
1463 3625 9.259832 TGTCATCCTACTTGCTGATATATATGT 57.740 33.333 0.00 0.00 0.00 2.29
1476 3638 6.627243 TGATATATATGTAGGCGTGTTGGTC 58.373 40.000 0.00 0.00 0.00 4.02
1488 3650 0.735978 TGTTGGTCGCTGCGATGTAG 60.736 55.000 28.51 0.00 38.42 2.74
1553 3731 3.946558 ACTAGCTTTCCCACTACTAGTCG 59.053 47.826 0.00 0.00 39.38 4.18
1573 3751 7.278461 AGTCGTTCTCTATATATGTGCAACT 57.722 36.000 0.00 0.00 38.04 3.16
1574 3752 8.392372 AGTCGTTCTCTATATATGTGCAACTA 57.608 34.615 0.00 0.00 38.04 2.24
1575 3753 8.508062 AGTCGTTCTCTATATATGTGCAACTAG 58.492 37.037 0.00 0.00 38.04 2.57
1577 3755 9.063615 TCGTTCTCTATATATGTGCAACTAGAA 57.936 33.333 0.00 0.00 38.04 2.10
1757 4049 2.421388 GCATGCACACCCTATCCTTGTA 60.421 50.000 14.21 0.00 0.00 2.41
1800 4092 4.728534 CGAGCAGGTATTGAGATAGCTAC 58.271 47.826 0.00 0.00 42.97 3.58
1874 4167 4.955811 TGAAACAAGTCTCTAGCTTCCA 57.044 40.909 0.00 0.00 0.00 3.53
1975 4268 4.910585 CGTAGCCCACCCGGATGC 62.911 72.222 0.73 0.00 0.00 3.91
2080 4375 2.418197 GCCAGCGTTGTATCCTGACTTA 60.418 50.000 0.00 0.00 0.00 2.24
2130 4425 3.557898 GCATGAGGAGAAAGACACCTTGA 60.558 47.826 0.00 0.00 39.58 3.02
2179 4489 4.366684 GGCAAGGGGTGTGGGGAG 62.367 72.222 0.00 0.00 0.00 4.30
2183 4493 2.813165 AAGGGGTGTGGGGAGAGGA 61.813 63.158 0.00 0.00 0.00 3.71
2184 4494 2.689034 GGGGTGTGGGGAGAGGAG 60.689 72.222 0.00 0.00 0.00 3.69
2188 4498 2.874245 TGTGGGGAGAGGAGGGGA 60.874 66.667 0.00 0.00 0.00 4.81
2266 4578 5.649782 TTTTCAATCCAGAGCAATTCCTC 57.350 39.130 0.00 0.00 0.00 3.71
2267 4579 4.305539 TTCAATCCAGAGCAATTCCTCA 57.694 40.909 0.00 0.00 34.26 3.86
2268 4580 4.515028 TCAATCCAGAGCAATTCCTCAT 57.485 40.909 0.00 0.00 34.26 2.90
2269 4581 4.863548 TCAATCCAGAGCAATTCCTCATT 58.136 39.130 0.00 0.00 34.26 2.57
2270 4582 5.266788 TCAATCCAGAGCAATTCCTCATTT 58.733 37.500 0.00 0.00 34.26 2.32
2271 4583 6.425735 TCAATCCAGAGCAATTCCTCATTTA 58.574 36.000 0.00 0.00 34.26 1.40
2272 4584 7.064866 TCAATCCAGAGCAATTCCTCATTTAT 58.935 34.615 0.00 0.00 34.26 1.40
2273 4585 7.230108 TCAATCCAGAGCAATTCCTCATTTATC 59.770 37.037 0.00 0.00 34.26 1.75
2274 4586 6.005066 TCCAGAGCAATTCCTCATTTATCA 57.995 37.500 0.00 0.00 34.26 2.15
2275 4587 6.425735 TCCAGAGCAATTCCTCATTTATCAA 58.574 36.000 0.00 0.00 34.26 2.57
2276 4588 6.891361 TCCAGAGCAATTCCTCATTTATCAAA 59.109 34.615 0.00 0.00 34.26 2.69
2277 4589 7.396907 TCCAGAGCAATTCCTCATTTATCAAAA 59.603 33.333 0.00 0.00 34.26 2.44
2278 4590 8.036575 CCAGAGCAATTCCTCATTTATCAAAAA 58.963 33.333 0.00 0.00 34.26 1.94
2293 4605 2.551644 AAAAACGGATGTCCTCGGC 58.448 52.632 0.00 0.00 0.00 5.54
2294 4606 0.036306 AAAAACGGATGTCCTCGGCT 59.964 50.000 0.00 0.00 0.00 5.52
2295 4607 0.673644 AAAACGGATGTCCTCGGCTG 60.674 55.000 0.00 0.00 0.00 4.85
2296 4608 2.521958 AAACGGATGTCCTCGGCTGG 62.522 60.000 0.00 0.00 0.00 4.85
2297 4609 3.147595 CGGATGTCCTCGGCTGGA 61.148 66.667 0.00 0.00 0.00 3.86
2298 4610 2.502492 CGGATGTCCTCGGCTGGAT 61.502 63.158 0.00 0.00 38.52 3.41
2299 4611 1.832912 GGATGTCCTCGGCTGGATT 59.167 57.895 0.00 0.00 38.52 3.01
2300 4612 0.250081 GGATGTCCTCGGCTGGATTC 60.250 60.000 0.00 1.53 38.52 2.52
2301 4613 0.598680 GATGTCCTCGGCTGGATTCG 60.599 60.000 0.00 0.00 38.52 3.34
2302 4614 1.043116 ATGTCCTCGGCTGGATTCGA 61.043 55.000 0.00 0.00 38.52 3.71
2303 4615 1.254975 TGTCCTCGGCTGGATTCGAA 61.255 55.000 0.00 0.00 38.52 3.71
2304 4616 0.806492 GTCCTCGGCTGGATTCGAAC 60.806 60.000 0.00 0.00 38.52 3.95
2305 4617 0.970937 TCCTCGGCTGGATTCGAACT 60.971 55.000 0.00 0.00 34.87 3.01
2306 4618 0.744874 CCTCGGCTGGATTCGAACTA 59.255 55.000 0.00 0.00 34.87 2.24
2307 4619 1.269309 CCTCGGCTGGATTCGAACTAG 60.269 57.143 0.00 3.43 34.87 2.57
2308 4620 1.676529 CTCGGCTGGATTCGAACTAGA 59.323 52.381 0.00 0.00 34.87 2.43
2309 4621 1.676529 TCGGCTGGATTCGAACTAGAG 59.323 52.381 0.00 0.00 32.11 2.43
2310 4622 1.859383 GGCTGGATTCGAACTAGAGC 58.141 55.000 0.00 5.88 0.00 4.09
2311 4623 1.539280 GGCTGGATTCGAACTAGAGCC 60.539 57.143 18.33 18.33 37.93 4.70
2312 4624 1.539280 GCTGGATTCGAACTAGAGCCC 60.539 57.143 0.00 0.00 0.00 5.19
2313 4625 2.035632 CTGGATTCGAACTAGAGCCCT 58.964 52.381 0.00 0.00 0.00 5.19
2314 4626 2.032620 TGGATTCGAACTAGAGCCCTC 58.967 52.381 0.00 0.00 0.00 4.30
2315 4627 2.032620 GGATTCGAACTAGAGCCCTCA 58.967 52.381 0.00 0.00 0.00 3.86
2316 4628 2.223852 GGATTCGAACTAGAGCCCTCAC 60.224 54.545 0.00 0.00 0.00 3.51
2317 4629 1.919240 TTCGAACTAGAGCCCTCACA 58.081 50.000 0.00 0.00 0.00 3.58
2318 4630 1.174783 TCGAACTAGAGCCCTCACAC 58.825 55.000 0.00 0.00 0.00 3.82
2319 4631 0.888619 CGAACTAGAGCCCTCACACA 59.111 55.000 0.00 0.00 0.00 3.72
2320 4632 1.402984 CGAACTAGAGCCCTCACACAC 60.403 57.143 0.00 0.00 0.00 3.82
2321 4633 1.896465 GAACTAGAGCCCTCACACACT 59.104 52.381 0.00 0.00 0.00 3.55
2322 4634 2.901338 ACTAGAGCCCTCACACACTA 57.099 50.000 0.00 0.00 0.00 2.74
2323 4635 3.390175 ACTAGAGCCCTCACACACTAT 57.610 47.619 0.00 0.00 0.00 2.12
2324 4636 3.027412 ACTAGAGCCCTCACACACTATG 58.973 50.000 0.00 0.00 0.00 2.23
2325 4637 1.944177 AGAGCCCTCACACACTATGT 58.056 50.000 0.00 0.00 44.81 2.29
2335 4647 3.177600 CACTATGTGTGGCCGCAC 58.822 61.111 37.09 37.09 42.68 5.34
2340 4652 2.359354 TGTGTGGCCGCACATACC 60.359 61.111 41.13 20.90 43.54 2.73
2341 4653 2.359354 GTGTGGCCGCACATACCA 60.359 61.111 38.23 5.25 39.07 3.25
2342 4654 1.748879 GTGTGGCCGCACATACCAT 60.749 57.895 38.23 0.00 39.07 3.55
2343 4655 1.451207 TGTGGCCGCACATACCATC 60.451 57.895 16.89 0.00 35.53 3.51
2344 4656 1.153168 GTGGCCGCACATACCATCT 60.153 57.895 12.58 0.00 35.53 2.90
2345 4657 1.153188 TGGCCGCACATACCATCTG 60.153 57.895 0.00 0.00 0.00 2.90
2346 4658 1.893808 GGCCGCACATACCATCTGG 60.894 63.158 0.00 0.00 42.17 3.86
2347 4659 1.893808 GCCGCACATACCATCTGGG 60.894 63.158 0.54 0.00 44.81 4.45
2348 4660 1.893808 CCGCACATACCATCTGGGC 60.894 63.158 0.54 0.00 42.05 5.36
2349 4661 1.146930 CGCACATACCATCTGGGCT 59.853 57.895 0.54 0.00 40.95 5.19
2350 4662 0.392706 CGCACATACCATCTGGGCTA 59.607 55.000 0.54 0.00 40.95 3.93
2351 4663 1.606480 CGCACATACCATCTGGGCTAG 60.606 57.143 0.54 0.00 40.95 3.42
2352 4664 1.694150 GCACATACCATCTGGGCTAGA 59.306 52.381 2.05 2.05 39.96 2.43
2353 4665 2.104792 GCACATACCATCTGGGCTAGAA 59.895 50.000 4.15 0.00 39.96 2.10
2354 4666 3.244700 GCACATACCATCTGGGCTAGAAT 60.245 47.826 4.15 0.00 39.96 2.40
2355 4667 4.020218 GCACATACCATCTGGGCTAGAATA 60.020 45.833 4.15 0.00 39.96 1.75
2356 4668 5.338708 GCACATACCATCTGGGCTAGAATAT 60.339 44.000 4.15 1.02 39.96 1.28
2357 4669 6.344500 CACATACCATCTGGGCTAGAATATC 58.656 44.000 4.15 0.00 42.05 1.63
2358 4670 5.426833 ACATACCATCTGGGCTAGAATATCC 59.573 44.000 4.15 0.00 42.05 2.59
2359 4671 3.874316 ACCATCTGGGCTAGAATATCCA 58.126 45.455 4.15 0.00 42.05 3.41
2360 4672 4.242811 ACCATCTGGGCTAGAATATCCAA 58.757 43.478 4.15 0.00 42.05 3.53
2361 4673 4.854436 ACCATCTGGGCTAGAATATCCAAT 59.146 41.667 4.15 0.00 42.05 3.16
2362 4674 5.314306 ACCATCTGGGCTAGAATATCCAATT 59.686 40.000 4.15 0.00 42.05 2.32
2363 4675 6.183361 ACCATCTGGGCTAGAATATCCAATTT 60.183 38.462 4.15 0.00 42.05 1.82
2364 4676 6.152323 CCATCTGGGCTAGAATATCCAATTTG 59.848 42.308 4.15 0.00 39.30 2.32
2365 4677 5.072741 TCTGGGCTAGAATATCCAATTTGC 58.927 41.667 0.00 0.00 30.84 3.68
2366 4678 4.151883 TGGGCTAGAATATCCAATTTGCC 58.848 43.478 0.00 0.00 37.34 4.52
2367 4679 4.151883 GGGCTAGAATATCCAATTTGCCA 58.848 43.478 0.00 0.00 39.56 4.92
2368 4680 4.588528 GGGCTAGAATATCCAATTTGCCAA 59.411 41.667 0.00 0.00 39.56 4.52
2369 4681 5.509670 GGGCTAGAATATCCAATTTGCCAAC 60.510 44.000 0.00 0.00 39.56 3.77
2370 4682 5.302823 GGCTAGAATATCCAATTTGCCAACT 59.697 40.000 0.00 0.00 37.91 3.16
2371 4683 6.490040 GGCTAGAATATCCAATTTGCCAACTA 59.510 38.462 0.00 0.00 37.91 2.24
2372 4684 7.014230 GGCTAGAATATCCAATTTGCCAACTAA 59.986 37.037 0.00 0.00 37.91 2.24
2373 4685 7.862873 GCTAGAATATCCAATTTGCCAACTAAC 59.137 37.037 0.00 0.00 0.00 2.34
2374 4686 7.112452 AGAATATCCAATTTGCCAACTAACC 57.888 36.000 0.00 0.00 0.00 2.85
2375 4687 6.897413 AGAATATCCAATTTGCCAACTAACCT 59.103 34.615 0.00 0.00 0.00 3.50
2376 4688 7.400052 AGAATATCCAATTTGCCAACTAACCTT 59.600 33.333 0.00 0.00 0.00 3.50
2377 4689 4.599047 TCCAATTTGCCAACTAACCTTG 57.401 40.909 0.00 0.00 0.00 3.61
2378 4690 3.964031 TCCAATTTGCCAACTAACCTTGT 59.036 39.130 0.00 0.00 0.00 3.16
2379 4691 4.407296 TCCAATTTGCCAACTAACCTTGTT 59.593 37.500 0.00 0.00 0.00 2.83
2380 4692 5.104735 TCCAATTTGCCAACTAACCTTGTTT 60.105 36.000 0.00 0.00 0.00 2.83
2381 4693 5.588246 CCAATTTGCCAACTAACCTTGTTTT 59.412 36.000 0.00 0.00 0.00 2.43
2382 4694 6.238347 CCAATTTGCCAACTAACCTTGTTTTC 60.238 38.462 0.00 0.00 0.00 2.29
2383 4695 5.669164 TTTGCCAACTAACCTTGTTTTCT 57.331 34.783 0.00 0.00 0.00 2.52
2384 4696 5.669164 TTGCCAACTAACCTTGTTTTCTT 57.331 34.783 0.00 0.00 0.00 2.52
2385 4697 5.257082 TGCCAACTAACCTTGTTTTCTTC 57.743 39.130 0.00 0.00 0.00 2.87
2386 4698 4.953579 TGCCAACTAACCTTGTTTTCTTCT 59.046 37.500 0.00 0.00 0.00 2.85
2387 4699 5.420739 TGCCAACTAACCTTGTTTTCTTCTT 59.579 36.000 0.00 0.00 0.00 2.52
2388 4700 5.977725 GCCAACTAACCTTGTTTTCTTCTTC 59.022 40.000 0.00 0.00 0.00 2.87
2389 4701 6.183360 GCCAACTAACCTTGTTTTCTTCTTCT 60.183 38.462 0.00 0.00 0.00 2.85
2390 4702 7.630728 GCCAACTAACCTTGTTTTCTTCTTCTT 60.631 37.037 0.00 0.00 0.00 2.52
2391 4703 7.702348 CCAACTAACCTTGTTTTCTTCTTCTTG 59.298 37.037 0.00 0.00 0.00 3.02
2392 4704 7.939784 ACTAACCTTGTTTTCTTCTTCTTGT 57.060 32.000 0.00 0.00 0.00 3.16
2393 4705 8.349568 ACTAACCTTGTTTTCTTCTTCTTGTT 57.650 30.769 0.00 0.00 0.00 2.83
2394 4706 8.459635 ACTAACCTTGTTTTCTTCTTCTTGTTC 58.540 33.333 0.00 0.00 0.00 3.18
2395 4707 5.880341 ACCTTGTTTTCTTCTTCTTGTTCG 58.120 37.500 0.00 0.00 0.00 3.95
2396 4708 5.646360 ACCTTGTTTTCTTCTTCTTGTTCGA 59.354 36.000 0.00 0.00 0.00 3.71
2397 4709 6.183360 ACCTTGTTTTCTTCTTCTTGTTCGAG 60.183 38.462 0.00 0.00 0.00 4.04
2398 4710 6.037172 CCTTGTTTTCTTCTTCTTGTTCGAGA 59.963 38.462 0.00 0.00 0.00 4.04
2399 4711 6.589830 TGTTTTCTTCTTCTTGTTCGAGAG 57.410 37.500 0.00 0.00 0.00 3.20
2400 4712 6.338146 TGTTTTCTTCTTCTTGTTCGAGAGA 58.662 36.000 0.00 0.00 39.20 3.10
2401 4713 6.255887 TGTTTTCTTCTTCTTGTTCGAGAGAC 59.744 38.462 0.00 0.00 41.84 3.36
2402 4714 5.515797 TTCTTCTTCTTGTTCGAGAGACA 57.484 39.130 0.00 0.00 41.84 3.41
2403 4715 5.713792 TCTTCTTCTTGTTCGAGAGACAT 57.286 39.130 0.00 0.00 41.84 3.06
2404 4716 6.819397 TCTTCTTCTTGTTCGAGAGACATA 57.181 37.500 0.00 0.00 41.84 2.29
2405 4717 7.215719 TCTTCTTCTTGTTCGAGAGACATAA 57.784 36.000 0.00 0.00 41.84 1.90
2406 4718 7.085116 TCTTCTTCTTGTTCGAGAGACATAAC 58.915 38.462 0.00 0.00 41.84 1.89
2407 4719 5.391449 TCTTCTTGTTCGAGAGACATAACG 58.609 41.667 0.00 0.00 41.84 3.18
2408 4720 3.499048 TCTTGTTCGAGAGACATAACGC 58.501 45.455 0.00 0.00 41.84 4.84
2409 4721 2.273370 TGTTCGAGAGACATAACGCC 57.727 50.000 0.00 0.00 41.84 5.68
2410 4722 1.542472 TGTTCGAGAGACATAACGCCA 59.458 47.619 0.00 0.00 41.84 5.69
2411 4723 2.029739 TGTTCGAGAGACATAACGCCAA 60.030 45.455 0.00 0.00 41.84 4.52
2412 4724 3.187700 GTTCGAGAGACATAACGCCAAT 58.812 45.455 0.00 0.00 41.84 3.16
2413 4725 3.520290 TCGAGAGACATAACGCCAATT 57.480 42.857 0.00 0.00 33.31 2.32
2414 4726 4.642445 TCGAGAGACATAACGCCAATTA 57.358 40.909 0.00 0.00 33.31 1.40
2415 4727 5.001237 TCGAGAGACATAACGCCAATTAA 57.999 39.130 0.00 0.00 33.31 1.40
2416 4728 5.412640 TCGAGAGACATAACGCCAATTAAA 58.587 37.500 0.00 0.00 33.31 1.52
2417 4729 5.870433 TCGAGAGACATAACGCCAATTAAAA 59.130 36.000 0.00 0.00 33.31 1.52
2418 4730 6.369340 TCGAGAGACATAACGCCAATTAAAAA 59.631 34.615 0.00 0.00 33.31 1.94
2433 4745 3.641031 AAAAACACAGCACCTTCGC 57.359 47.368 0.00 0.00 0.00 4.70
2434 4746 1.102978 AAAAACACAGCACCTTCGCT 58.897 45.000 0.00 0.00 45.21 4.93
2435 4747 0.663153 AAAACACAGCACCTTCGCTC 59.337 50.000 0.00 0.00 41.38 5.03
2436 4748 0.179045 AAACACAGCACCTTCGCTCT 60.179 50.000 0.00 0.00 41.38 4.09
2437 4749 0.179045 AACACAGCACCTTCGCTCTT 60.179 50.000 0.00 0.00 41.38 2.85
2438 4750 0.179045 ACACAGCACCTTCGCTCTTT 60.179 50.000 0.00 0.00 41.38 2.52
2439 4751 0.236711 CACAGCACCTTCGCTCTTTG 59.763 55.000 0.00 0.00 41.38 2.77
2440 4752 0.886490 ACAGCACCTTCGCTCTTTGG 60.886 55.000 0.00 0.00 41.38 3.28
2441 4753 0.886490 CAGCACCTTCGCTCTTTGGT 60.886 55.000 0.00 0.00 41.38 3.67
2442 4754 0.179018 AGCACCTTCGCTCTTTGGTT 60.179 50.000 0.00 0.00 37.91 3.67
2443 4755 0.668535 GCACCTTCGCTCTTTGGTTT 59.331 50.000 0.00 0.00 0.00 3.27
2444 4756 1.877443 GCACCTTCGCTCTTTGGTTTA 59.123 47.619 0.00 0.00 0.00 2.01
2445 4757 2.488153 GCACCTTCGCTCTTTGGTTTAT 59.512 45.455 0.00 0.00 0.00 1.40
2446 4758 3.670627 GCACCTTCGCTCTTTGGTTTATG 60.671 47.826 0.00 0.00 0.00 1.90
2447 4759 3.502211 CACCTTCGCTCTTTGGTTTATGT 59.498 43.478 0.00 0.00 0.00 2.29
2448 4760 4.023193 CACCTTCGCTCTTTGGTTTATGTT 60.023 41.667 0.00 0.00 0.00 2.71
2449 4761 4.583073 ACCTTCGCTCTTTGGTTTATGTTT 59.417 37.500 0.00 0.00 0.00 2.83
2450 4762 5.068591 ACCTTCGCTCTTTGGTTTATGTTTT 59.931 36.000 0.00 0.00 0.00 2.43
2451 4763 5.983118 CCTTCGCTCTTTGGTTTATGTTTTT 59.017 36.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.919600 GCATGCCAAGGAGGAGACCT 61.920 60.000 6.36 0.00 41.22 3.85
29 30 3.197790 CCAAGACGGAGGCGCATG 61.198 66.667 10.83 0.00 36.56 4.06
33 34 2.432628 GTGACCAAGACGGAGGCG 60.433 66.667 0.00 0.00 38.63 5.52
146 147 2.955660 CCTAGAGAAGAAGGCACTCGAT 59.044 50.000 0.00 0.00 38.49 3.59
266 267 2.840640 TGTTCTTATCTCCCCTCGGA 57.159 50.000 0.00 0.00 36.45 4.55
278 279 6.069440 AGAGATGTGGGGATGATTTGTTCTTA 60.069 38.462 0.00 0.00 0.00 2.10
335 362 8.206867 GCAGATATACATATCTCCTTTGCCATA 58.793 37.037 8.48 0.00 45.70 2.74
432 473 6.108015 CCCCCATGAAATGTGTTAAATCAAG 58.892 40.000 0.00 0.00 44.81 3.02
525 569 8.251750 TCACGGTGAGATATTAAAAAGTCTTG 57.748 34.615 6.76 0.00 0.00 3.02
545 589 9.764363 ATGTTACCTTATATATATGCATCACGG 57.236 33.333 0.19 0.00 0.00 4.94
704 750 1.941975 TCATGCTTATGGATGTGTGCG 59.058 47.619 9.46 0.00 41.82 5.34
709 755 6.462500 GTGAGATACTCATGCTTATGGATGT 58.538 40.000 9.46 0.00 42.73 3.06
823 877 2.285083 TCGGCAGTTTACATATGGCAC 58.715 47.619 7.80 0.51 39.31 5.01
842 896 5.010719 TCCCATACATGACGGTTTAGAGATC 59.989 44.000 0.00 0.00 0.00 2.75
848 902 3.472652 GCATCCCATACATGACGGTTTA 58.527 45.455 0.00 0.00 0.00 2.01
852 906 0.249868 ACGCATCCCATACATGACGG 60.250 55.000 0.00 0.00 0.00 4.79
927 981 0.036952 AGAGGCAATGACTGTGACCG 60.037 55.000 0.00 0.00 0.00 4.79
934 988 3.330701 TCCAAACCTAAGAGGCAATGACT 59.669 43.478 0.00 0.00 39.63 3.41
963 1017 9.098355 CAACTCGATTGTGGAAATCTATTTCTA 57.902 33.333 13.57 6.42 38.72 2.10
965 1019 7.974675 TCAACTCGATTGTGGAAATCTATTTC 58.025 34.615 6.85 6.85 40.95 2.17
966 1020 7.921786 TCAACTCGATTGTGGAAATCTATTT 57.078 32.000 7.24 0.00 39.54 1.40
1032 1088 2.927580 GCACCCGACGAACAGGAGA 61.928 63.158 0.00 0.00 0.00 3.71
1059 1115 3.830744 ATAGTACGCTTACATTGCCCA 57.169 42.857 2.93 0.00 0.00 5.36
1121 3259 2.954611 GCGAGAACAACTTGGGGC 59.045 61.111 0.00 0.00 0.00 5.80
1122 3260 1.164041 AACGCGAGAACAACTTGGGG 61.164 55.000 15.93 0.00 44.22 4.96
1123 3261 0.041312 CAACGCGAGAACAACTTGGG 60.041 55.000 15.93 0.00 45.07 4.12
1124 3262 0.655733 ACAACGCGAGAACAACTTGG 59.344 50.000 15.93 0.00 0.00 3.61
1125 3263 1.730176 CACAACGCGAGAACAACTTG 58.270 50.000 15.93 6.70 0.00 3.16
1126 3264 0.027586 GCACAACGCGAGAACAACTT 59.972 50.000 15.93 0.00 0.00 2.66
1127 3265 1.087202 TGCACAACGCGAGAACAACT 61.087 50.000 15.93 0.00 46.97 3.16
1199 3352 0.906756 TCTCCTGGTGGCTTCCTCTG 60.907 60.000 0.00 0.00 0.00 3.35
1214 3370 3.997021 CGGTAATATTGGCATGACTCTCC 59.003 47.826 0.00 0.00 0.00 3.71
1282 3438 1.135257 TGAGTTTGCTAGAGCTCGAGC 60.135 52.381 34.05 34.05 43.55 5.03
1283 3439 2.525055 GTGAGTTTGCTAGAGCTCGAG 58.475 52.381 18.59 18.59 42.66 4.04
1284 3440 1.135660 CGTGAGTTTGCTAGAGCTCGA 60.136 52.381 8.37 1.31 42.66 4.04
1285 3441 1.135660 TCGTGAGTTTGCTAGAGCTCG 60.136 52.381 8.37 0.00 42.66 5.03
1292 3448 2.159014 ACACCAGTTCGTGAGTTTGCTA 60.159 45.455 0.00 0.00 37.20 3.49
1301 3457 1.871039 CTTGGGTAACACCAGTTCGTG 59.129 52.381 0.00 0.00 42.47 4.35
1476 3638 0.309302 AGTAGCTCTACATCGCAGCG 59.691 55.000 9.06 9.06 38.26 5.18
1488 3650 4.968788 CGAATAACACCGAACTAGTAGCTC 59.031 45.833 0.00 0.00 0.00 4.09
1589 3767 7.191551 TCGTTCATATCTTTAAACTCGATCGT 58.808 34.615 15.94 0.00 0.00 3.73
1590 3768 7.604714 TCGTTCATATCTTTAAACTCGATCG 57.395 36.000 9.36 9.36 0.00 3.69
1629 3856 3.242011 ACAATGCAAAAGATGGGTCCTT 58.758 40.909 0.00 0.00 0.00 3.36
1632 3859 3.940209 TGACAATGCAAAAGATGGGTC 57.060 42.857 0.00 0.00 0.00 4.46
1633 3860 4.571919 CATTGACAATGCAAAAGATGGGT 58.428 39.130 14.96 0.00 31.20 4.51
1773 4065 1.824852 TCTCAATACCTGCTCGCTCAA 59.175 47.619 0.00 0.00 0.00 3.02
1857 4150 3.513515 CCTCTTGGAAGCTAGAGACTTGT 59.486 47.826 12.03 0.00 40.24 3.16
1902 4195 2.201436 CTACACGCGAGAGGCACTGT 62.201 60.000 15.93 6.53 41.55 3.55
2022 4315 1.082431 CTAGAGCTCGTCGGCGATG 60.082 63.158 22.59 22.59 46.80 3.84
2064 4357 3.106672 GCGACTAAGTCAGGATACAACG 58.893 50.000 0.00 0.00 41.41 4.10
2165 4475 2.204151 CCTCTCCCCACACCCCTT 60.204 66.667 0.00 0.00 0.00 3.95
2170 4480 2.689034 CCCCTCCTCTCCCCACAC 60.689 72.222 0.00 0.00 0.00 3.82
2171 4481 2.874245 TCCCCTCCTCTCCCCACA 60.874 66.667 0.00 0.00 0.00 4.17
2173 4483 3.368501 CCTCCCCTCCTCTCCCCA 61.369 72.222 0.00 0.00 0.00 4.96
2175 4485 4.890306 GCCCTCCCCTCCTCTCCC 62.890 77.778 0.00 0.00 0.00 4.30
2248 4558 5.593679 AAATGAGGAATTGCTCTGGATTG 57.406 39.130 25.01 0.00 0.00 2.67
2275 4587 0.036306 AGCCGAGGACATCCGTTTTT 59.964 50.000 0.00 0.00 42.08 1.94
2276 4588 0.673644 CAGCCGAGGACATCCGTTTT 60.674 55.000 0.00 0.00 42.08 2.43
2277 4589 1.079127 CAGCCGAGGACATCCGTTT 60.079 57.895 0.00 0.00 42.08 3.60
2278 4590 2.579201 CAGCCGAGGACATCCGTT 59.421 61.111 0.00 0.00 42.08 4.44
2279 4591 3.461773 CCAGCCGAGGACATCCGT 61.462 66.667 0.00 0.00 42.08 4.69
2280 4592 2.032860 AATCCAGCCGAGGACATCCG 62.033 60.000 0.00 0.00 41.30 4.18
2281 4593 0.250081 GAATCCAGCCGAGGACATCC 60.250 60.000 0.00 0.00 41.30 3.51
2282 4594 0.598680 CGAATCCAGCCGAGGACATC 60.599 60.000 0.00 0.00 41.30 3.06
2283 4595 1.043116 TCGAATCCAGCCGAGGACAT 61.043 55.000 0.00 0.00 41.30 3.06
2284 4596 1.254975 TTCGAATCCAGCCGAGGACA 61.255 55.000 0.00 0.00 41.30 4.02
2285 4597 0.806492 GTTCGAATCCAGCCGAGGAC 60.806 60.000 0.00 0.00 41.30 3.85
2286 4598 0.970937 AGTTCGAATCCAGCCGAGGA 60.971 55.000 0.00 0.00 43.01 3.71
2287 4599 0.744874 TAGTTCGAATCCAGCCGAGG 59.255 55.000 0.00 0.00 36.11 4.63
2288 4600 1.676529 TCTAGTTCGAATCCAGCCGAG 59.323 52.381 0.00 0.00 36.11 4.63
2289 4601 1.676529 CTCTAGTTCGAATCCAGCCGA 59.323 52.381 0.00 0.00 0.00 5.54
2290 4602 1.866063 GCTCTAGTTCGAATCCAGCCG 60.866 57.143 0.00 0.00 0.00 5.52
2291 4603 1.539280 GGCTCTAGTTCGAATCCAGCC 60.539 57.143 18.76 18.76 38.35 4.85
2292 4604 1.539280 GGGCTCTAGTTCGAATCCAGC 60.539 57.143 0.00 6.95 0.00 4.85
2293 4605 2.035321 GAGGGCTCTAGTTCGAATCCAG 59.965 54.545 0.00 0.00 0.00 3.86
2294 4606 2.032620 GAGGGCTCTAGTTCGAATCCA 58.967 52.381 0.00 0.00 0.00 3.41
2295 4607 2.032620 TGAGGGCTCTAGTTCGAATCC 58.967 52.381 0.00 0.00 0.00 3.01
2296 4608 2.427453 TGTGAGGGCTCTAGTTCGAATC 59.573 50.000 0.00 0.00 0.00 2.52
2297 4609 2.166664 GTGTGAGGGCTCTAGTTCGAAT 59.833 50.000 0.00 0.00 0.00 3.34
2298 4610 1.544691 GTGTGAGGGCTCTAGTTCGAA 59.455 52.381 0.00 0.00 0.00 3.71
2299 4611 1.174783 GTGTGAGGGCTCTAGTTCGA 58.825 55.000 0.00 0.00 0.00 3.71
2300 4612 0.888619 TGTGTGAGGGCTCTAGTTCG 59.111 55.000 0.00 0.00 0.00 3.95
2301 4613 1.896465 AGTGTGTGAGGGCTCTAGTTC 59.104 52.381 0.00 0.00 0.00 3.01
2302 4614 2.016905 AGTGTGTGAGGGCTCTAGTT 57.983 50.000 0.00 0.00 0.00 2.24
2303 4615 2.901338 TAGTGTGTGAGGGCTCTAGT 57.099 50.000 0.00 0.00 0.00 2.57
2304 4616 3.027412 ACATAGTGTGTGAGGGCTCTAG 58.973 50.000 0.00 0.00 40.28 2.43
2305 4617 3.101643 ACATAGTGTGTGAGGGCTCTA 57.898 47.619 0.00 0.00 40.28 2.43
2306 4618 1.944177 ACATAGTGTGTGAGGGCTCT 58.056 50.000 0.00 0.00 40.28 4.09
2318 4630 1.670730 TGTGCGGCCACACATAGTG 60.671 57.895 22.54 0.00 46.51 2.74
2319 4631 2.747022 TGTGCGGCCACACATAGT 59.253 55.556 22.54 0.00 46.51 2.12
2326 4638 1.153168 AGATGGTATGTGCGGCCAC 60.153 57.895 2.24 0.00 42.40 5.01
2327 4639 1.153188 CAGATGGTATGTGCGGCCA 60.153 57.895 2.24 0.00 36.64 5.36
2328 4640 1.893808 CCAGATGGTATGTGCGGCC 60.894 63.158 0.00 0.00 0.00 6.13
2329 4641 1.893808 CCCAGATGGTATGTGCGGC 60.894 63.158 0.00 0.00 0.00 6.53
2330 4642 1.893808 GCCCAGATGGTATGTGCGG 60.894 63.158 0.00 0.00 36.04 5.69
2331 4643 0.392706 TAGCCCAGATGGTATGTGCG 59.607 55.000 0.00 0.00 36.04 5.34
2332 4644 1.694150 TCTAGCCCAGATGGTATGTGC 59.306 52.381 0.00 0.00 36.04 4.57
2333 4645 4.630644 ATTCTAGCCCAGATGGTATGTG 57.369 45.455 0.00 0.00 36.04 3.21
2334 4646 5.426833 GGATATTCTAGCCCAGATGGTATGT 59.573 44.000 0.00 0.00 36.04 2.29
2335 4647 5.426509 TGGATATTCTAGCCCAGATGGTATG 59.573 44.000 0.00 0.00 36.04 2.39
2336 4648 5.603750 TGGATATTCTAGCCCAGATGGTAT 58.396 41.667 0.00 0.00 36.04 2.73
2337 4649 5.023514 TGGATATTCTAGCCCAGATGGTA 57.976 43.478 0.00 0.00 36.04 3.25
2338 4650 3.874316 TGGATATTCTAGCCCAGATGGT 58.126 45.455 0.00 0.00 36.04 3.55
2339 4651 4.916041 TTGGATATTCTAGCCCAGATGG 57.084 45.455 0.00 0.00 31.88 3.51
2340 4652 6.349944 GCAAATTGGATATTCTAGCCCAGATG 60.350 42.308 0.00 0.00 31.88 2.90
2341 4653 5.713861 GCAAATTGGATATTCTAGCCCAGAT 59.286 40.000 0.00 0.00 31.88 2.90
2342 4654 5.072741 GCAAATTGGATATTCTAGCCCAGA 58.927 41.667 0.00 0.00 31.88 3.86
2343 4655 4.219288 GGCAAATTGGATATTCTAGCCCAG 59.781 45.833 0.00 0.00 31.88 4.45
2344 4656 4.151883 GGCAAATTGGATATTCTAGCCCA 58.848 43.478 0.00 0.00 31.88 5.36
2345 4657 4.151883 TGGCAAATTGGATATTCTAGCCC 58.848 43.478 0.00 0.00 38.81 5.19
2346 4658 5.302823 AGTTGGCAAATTGGATATTCTAGCC 59.697 40.000 0.00 0.00 39.95 3.93
2347 4659 6.396829 AGTTGGCAAATTGGATATTCTAGC 57.603 37.500 0.00 0.00 0.00 3.42
2348 4660 8.352942 GGTTAGTTGGCAAATTGGATATTCTAG 58.647 37.037 5.17 0.00 0.00 2.43
2349 4661 8.058847 AGGTTAGTTGGCAAATTGGATATTCTA 58.941 33.333 5.17 0.00 0.00 2.10
2350 4662 6.897413 AGGTTAGTTGGCAAATTGGATATTCT 59.103 34.615 5.17 0.00 0.00 2.40
2351 4663 7.112452 AGGTTAGTTGGCAAATTGGATATTC 57.888 36.000 5.17 0.00 0.00 1.75
2352 4664 7.038373 ACAAGGTTAGTTGGCAAATTGGATATT 60.038 33.333 5.17 0.00 0.00 1.28
2353 4665 6.440328 ACAAGGTTAGTTGGCAAATTGGATAT 59.560 34.615 5.17 0.00 0.00 1.63
2354 4666 5.777732 ACAAGGTTAGTTGGCAAATTGGATA 59.222 36.000 5.17 0.00 0.00 2.59
2355 4667 4.592778 ACAAGGTTAGTTGGCAAATTGGAT 59.407 37.500 5.17 0.00 0.00 3.41
2356 4668 3.964031 ACAAGGTTAGTTGGCAAATTGGA 59.036 39.130 5.17 0.00 0.00 3.53
2357 4669 4.335400 ACAAGGTTAGTTGGCAAATTGG 57.665 40.909 5.17 0.00 0.00 3.16
2358 4670 6.538381 AGAAAACAAGGTTAGTTGGCAAATTG 59.462 34.615 5.17 0.00 0.00 2.32
2359 4671 6.649155 AGAAAACAAGGTTAGTTGGCAAATT 58.351 32.000 5.17 0.00 0.00 1.82
2360 4672 6.233905 AGAAAACAAGGTTAGTTGGCAAAT 57.766 33.333 5.23 5.23 0.00 2.32
2361 4673 5.669164 AGAAAACAAGGTTAGTTGGCAAA 57.331 34.783 0.00 0.00 0.00 3.68
2362 4674 5.420739 AGAAGAAAACAAGGTTAGTTGGCAA 59.579 36.000 0.00 0.00 0.00 4.52
2363 4675 4.953579 AGAAGAAAACAAGGTTAGTTGGCA 59.046 37.500 0.00 0.00 0.00 4.92
2364 4676 5.515797 AGAAGAAAACAAGGTTAGTTGGC 57.484 39.130 0.00 0.00 0.00 4.52
2365 4677 7.334844 AGAAGAAGAAAACAAGGTTAGTTGG 57.665 36.000 0.00 0.00 0.00 3.77
2366 4678 8.244113 ACAAGAAGAAGAAAACAAGGTTAGTTG 58.756 33.333 0.00 0.00 0.00 3.16
2367 4679 8.349568 ACAAGAAGAAGAAAACAAGGTTAGTT 57.650 30.769 0.00 0.00 0.00 2.24
2368 4680 7.939784 ACAAGAAGAAGAAAACAAGGTTAGT 57.060 32.000 0.00 0.00 0.00 2.24
2369 4681 7.640240 CGAACAAGAAGAAGAAAACAAGGTTAG 59.360 37.037 0.00 0.00 0.00 2.34
2370 4682 7.334921 TCGAACAAGAAGAAGAAAACAAGGTTA 59.665 33.333 0.00 0.00 0.00 2.85
2371 4683 6.150474 TCGAACAAGAAGAAGAAAACAAGGTT 59.850 34.615 0.00 0.00 0.00 3.50
2372 4684 5.646360 TCGAACAAGAAGAAGAAAACAAGGT 59.354 36.000 0.00 0.00 0.00 3.50
2373 4685 6.037172 TCTCGAACAAGAAGAAGAAAACAAGG 59.963 38.462 0.00 0.00 0.00 3.61
2374 4686 7.005062 TCTCGAACAAGAAGAAGAAAACAAG 57.995 36.000 0.00 0.00 0.00 3.16
2375 4687 6.816640 TCTCTCGAACAAGAAGAAGAAAACAA 59.183 34.615 0.00 0.00 0.00 2.83
2376 4688 6.255887 GTCTCTCGAACAAGAAGAAGAAAACA 59.744 38.462 0.00 0.00 0.00 2.83
2377 4689 6.255887 TGTCTCTCGAACAAGAAGAAGAAAAC 59.744 38.462 0.00 0.00 0.00 2.43
2378 4690 6.338146 TGTCTCTCGAACAAGAAGAAGAAAA 58.662 36.000 0.00 0.00 0.00 2.29
2379 4691 5.902681 TGTCTCTCGAACAAGAAGAAGAAA 58.097 37.500 0.00 0.00 0.00 2.52
2380 4692 5.515797 TGTCTCTCGAACAAGAAGAAGAA 57.484 39.130 0.00 0.00 0.00 2.52
2381 4693 5.713792 ATGTCTCTCGAACAAGAAGAAGA 57.286 39.130 0.00 0.00 0.00 2.87
2382 4694 6.032985 CGTTATGTCTCTCGAACAAGAAGAAG 59.967 42.308 0.00 0.00 0.00 2.85
2383 4695 5.856986 CGTTATGTCTCTCGAACAAGAAGAA 59.143 40.000 0.00 0.00 0.00 2.52
2384 4696 5.391449 CGTTATGTCTCTCGAACAAGAAGA 58.609 41.667 0.00 0.00 0.00 2.87
2385 4697 4.030753 GCGTTATGTCTCTCGAACAAGAAG 59.969 45.833 0.00 0.00 0.00 2.85
2386 4698 3.918591 GCGTTATGTCTCTCGAACAAGAA 59.081 43.478 0.00 0.00 0.00 2.52
2387 4699 3.499048 GCGTTATGTCTCTCGAACAAGA 58.501 45.455 0.00 0.00 0.00 3.02
2388 4700 2.599082 GGCGTTATGTCTCTCGAACAAG 59.401 50.000 0.00 0.00 0.00 3.16
2389 4701 2.029739 TGGCGTTATGTCTCTCGAACAA 60.030 45.455 0.00 0.00 0.00 2.83
2390 4702 1.542472 TGGCGTTATGTCTCTCGAACA 59.458 47.619 0.00 0.00 0.00 3.18
2391 4703 2.273370 TGGCGTTATGTCTCTCGAAC 57.727 50.000 0.00 0.00 0.00 3.95
2392 4704 3.520290 ATTGGCGTTATGTCTCTCGAA 57.480 42.857 0.00 0.00 0.00 3.71
2393 4705 3.520290 AATTGGCGTTATGTCTCTCGA 57.480 42.857 0.00 0.00 0.00 4.04
2394 4706 5.712217 TTTAATTGGCGTTATGTCTCTCG 57.288 39.130 0.00 0.00 0.00 4.04
2415 4727 1.102978 AGCGAAGGTGCTGTGTTTTT 58.897 45.000 0.00 0.00 45.28 1.94
2416 4728 2.793831 AGCGAAGGTGCTGTGTTTT 58.206 47.368 0.00 0.00 45.28 2.43
2417 4729 4.559502 AGCGAAGGTGCTGTGTTT 57.440 50.000 0.00 0.00 45.28 2.83
2424 4736 0.668535 AAACCAAAGAGCGAAGGTGC 59.331 50.000 0.00 0.00 39.88 5.01
2425 4737 3.502211 ACATAAACCAAAGAGCGAAGGTG 59.498 43.478 0.00 0.00 39.88 4.00
2426 4738 3.751518 ACATAAACCAAAGAGCGAAGGT 58.248 40.909 0.00 0.00 46.54 3.50
2427 4739 4.766404 AACATAAACCAAAGAGCGAAGG 57.234 40.909 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.