Multiple sequence alignment - TraesCS6D01G363500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G363500 chr6D 100.000 2476 0 0 1 2476 453937588 453935113 0.000000e+00 4573.0
1 TraesCS6D01G363500 chr6D 89.394 132 8 4 607 735 97260987 97260859 7.090000e-36 161.0
2 TraesCS6D01G363500 chr4D 98.985 1872 15 2 606 2476 97718631 97720499 0.000000e+00 3349.0
3 TraesCS6D01G363500 chr5D 99.110 1573 11 3 906 2476 332220741 332219170 0.000000e+00 2824.0
4 TraesCS6D01G363500 chr5D 95.954 346 6 6 606 950 332220996 332220658 2.780000e-154 555.0
5 TraesCS6D01G363500 chr5D 85.938 128 12 3 602 727 446580262 446580139 5.560000e-27 132.0
6 TraesCS6D01G363500 chr1B 97.736 1016 22 1 1461 2476 17704251 17703237 0.000000e+00 1748.0
7 TraesCS6D01G363500 chr1B 96.344 547 19 1 909 1454 17705071 17704525 0.000000e+00 898.0
8 TraesCS6D01G363500 chr1B 97.273 110 3 0 805 914 17705130 17705021 1.170000e-43 187.0
9 TraesCS6D01G363500 chr7B 96.450 1014 36 0 1461 2474 532151061 532152074 0.000000e+00 1674.0
10 TraesCS6D01G363500 chr7B 96.055 1014 40 0 1461 2474 69987841 69986828 0.000000e+00 1652.0
11 TraesCS6D01G363500 chr7B 95.299 1021 41 3 1461 2474 679677380 679676360 0.000000e+00 1613.0
12 TraesCS6D01G363500 chr7B 85.861 877 63 31 601 1458 532148530 532149364 0.000000e+00 876.0
13 TraesCS6D01G363500 chr7B 85.063 877 71 31 602 1458 69990377 69989541 0.000000e+00 839.0
14 TraesCS6D01G363500 chr7B 93.636 330 15 1 1135 1458 679679232 679678903 2.860000e-134 488.0
15 TraesCS6D01G363500 chr7B 82.294 497 47 23 606 1090 679679697 679679230 2.310000e-105 392.0
16 TraesCS6D01G363500 chr5A 96.055 1014 40 0 1461 2474 387354893 387355906 0.000000e+00 1652.0
17 TraesCS6D01G363500 chr3B 96.055 1014 38 2 1461 2474 736664015 736665026 0.000000e+00 1650.0
18 TraesCS6D01G363500 chr7A 95.562 1014 37 1 1461 2474 641313166 641314171 0.000000e+00 1616.0
19 TraesCS6D01G363500 chr7A 86.505 867 61 27 606 1446 641312185 641313021 0.000000e+00 902.0
20 TraesCS6D01G363500 chr7A 84.314 765 61 29 603 1348 137842377 137843101 0.000000e+00 693.0
21 TraesCS6D01G363500 chr7A 90.244 82 8 0 916 997 137842637 137842718 9.360000e-20 108.0
22 TraesCS6D01G363500 chr2B 86.232 828 55 30 650 1458 139345066 139345853 0.000000e+00 843.0
23 TraesCS6D01G363500 chr3A 84.815 810 64 30 603 1393 674334727 674335496 0.000000e+00 760.0
24 TraesCS6D01G363500 chr6A 93.814 388 23 1 1 388 599947843 599947457 1.280000e-162 582.0
25 TraesCS6D01G363500 chr7D 95.342 322 15 0 1000 1321 113755008 113754687 1.700000e-141 512.0
26 TraesCS6D01G363500 chr7D 79.231 130 27 0 86 215 99956970 99956841 9.430000e-15 91.6
27 TraesCS6D01G363500 chr6B 88.475 295 33 1 15 309 689289467 689289174 3.030000e-94 355.0
28 TraesCS6D01G363500 chr1A 79.828 233 44 3 2 233 504571406 504571636 1.520000e-37 167.0
29 TraesCS6D01G363500 chr1A 82.540 126 16 5 604 727 48765061 48764940 3.370000e-19 106.0
30 TraesCS6D01G363500 chr2A 81.102 127 17 5 604 727 88728601 88728479 7.290000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G363500 chr6D 453935113 453937588 2475 True 4573.000000 4573 100.000000 1 2476 1 chr6D.!!$R2 2475
1 TraesCS6D01G363500 chr4D 97718631 97720499 1868 False 3349.000000 3349 98.985000 606 2476 1 chr4D.!!$F1 1870
2 TraesCS6D01G363500 chr5D 332219170 332220996 1826 True 1689.500000 2824 97.532000 606 2476 2 chr5D.!!$R2 1870
3 TraesCS6D01G363500 chr1B 17703237 17705130 1893 True 944.333333 1748 97.117667 805 2476 3 chr1B.!!$R1 1671
4 TraesCS6D01G363500 chr7B 532148530 532152074 3544 False 1275.000000 1674 91.155500 601 2474 2 chr7B.!!$F1 1873
5 TraesCS6D01G363500 chr7B 69986828 69990377 3549 True 1245.500000 1652 90.559000 602 2474 2 chr7B.!!$R1 1872
6 TraesCS6D01G363500 chr7B 679676360 679679697 3337 True 831.000000 1613 90.409667 606 2474 3 chr7B.!!$R2 1868
7 TraesCS6D01G363500 chr5A 387354893 387355906 1013 False 1652.000000 1652 96.055000 1461 2474 1 chr5A.!!$F1 1013
8 TraesCS6D01G363500 chr3B 736664015 736665026 1011 False 1650.000000 1650 96.055000 1461 2474 1 chr3B.!!$F1 1013
9 TraesCS6D01G363500 chr7A 641312185 641314171 1986 False 1259.000000 1616 91.033500 606 2474 2 chr7A.!!$F2 1868
10 TraesCS6D01G363500 chr7A 137842377 137843101 724 False 400.500000 693 87.279000 603 1348 2 chr7A.!!$F1 745
11 TraesCS6D01G363500 chr2B 139345066 139345853 787 False 843.000000 843 86.232000 650 1458 1 chr2B.!!$F1 808
12 TraesCS6D01G363500 chr3A 674334727 674335496 769 False 760.000000 760 84.815000 603 1393 1 chr3A.!!$F1 790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.036105 TAGAGTCGGGTGCACGAGTA 60.036 55.0 11.45 0.0 45.69 2.59 F
588 589 0.036732 GCCACCCAACAGATCTGTGA 59.963 55.0 28.52 0.0 44.13 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1034 1124 3.721706 CTCCTCCCACACAGGCCC 61.722 72.222 0.0 0.0 35.39 5.8 R
2273 4258 3.970610 CGCTGCTTGAATAATTCATTCCG 59.029 43.478 0.0 0.0 42.17 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.024176 AAACATCGCGATTGCTAGGT 57.976 45.000 21.14 10.44 39.65 3.08
20 21 2.882927 AACATCGCGATTGCTAGGTA 57.117 45.000 21.14 0.00 39.65 3.08
21 22 3.386768 AACATCGCGATTGCTAGGTAT 57.613 42.857 21.14 1.88 39.65 2.73
22 23 4.514781 AACATCGCGATTGCTAGGTATA 57.485 40.909 21.14 0.00 39.65 1.47
23 24 4.514781 ACATCGCGATTGCTAGGTATAA 57.485 40.909 21.14 0.00 39.65 0.98
24 25 4.235360 ACATCGCGATTGCTAGGTATAAC 58.765 43.478 21.14 0.00 39.65 1.89
25 26 3.293311 TCGCGATTGCTAGGTATAACC 57.707 47.619 3.71 0.00 39.65 2.85
26 27 2.624364 TCGCGATTGCTAGGTATAACCA 59.376 45.455 3.71 0.00 39.02 3.67
27 28 3.068448 TCGCGATTGCTAGGTATAACCAA 59.932 43.478 3.71 0.00 39.02 3.67
28 29 3.183775 CGCGATTGCTAGGTATAACCAAC 59.816 47.826 0.00 0.00 39.02 3.77
29 30 4.377897 GCGATTGCTAGGTATAACCAACT 58.622 43.478 0.00 0.00 38.40 3.16
30 31 4.814771 GCGATTGCTAGGTATAACCAACTT 59.185 41.667 0.00 0.00 38.40 2.66
31 32 5.277345 GCGATTGCTAGGTATAACCAACTTG 60.277 44.000 0.00 0.00 38.40 3.16
32 33 5.236478 CGATTGCTAGGTATAACCAACTTGG 59.764 44.000 6.24 6.24 41.95 3.61
33 34 4.497291 TGCTAGGTATAACCAACTTGGG 57.503 45.455 12.62 0.00 43.37 4.12
34 35 3.847780 TGCTAGGTATAACCAACTTGGGT 59.152 43.478 12.62 8.25 43.37 4.51
42 43 2.543037 ACCAACTTGGGTTTTGACCT 57.457 45.000 12.62 0.00 43.37 3.85
43 44 3.673543 ACCAACTTGGGTTTTGACCTA 57.326 42.857 12.62 0.00 43.37 3.08
44 45 3.562182 ACCAACTTGGGTTTTGACCTAG 58.438 45.455 12.62 0.00 43.37 3.02
45 46 2.890945 CCAACTTGGGTTTTGACCTAGG 59.109 50.000 7.41 7.41 35.54 3.02
46 47 2.287977 ACTTGGGTTTTGACCTAGGC 57.712 50.000 9.30 2.11 35.54 3.93
47 48 1.780919 ACTTGGGTTTTGACCTAGGCT 59.219 47.619 9.30 0.00 35.54 4.58
48 49 2.177016 ACTTGGGTTTTGACCTAGGCTT 59.823 45.455 9.30 0.00 35.54 4.35
49 50 3.230976 CTTGGGTTTTGACCTAGGCTTT 58.769 45.455 9.30 0.00 0.00 3.51
50 51 2.871453 TGGGTTTTGACCTAGGCTTTC 58.129 47.619 9.30 0.00 0.00 2.62
51 52 2.175931 TGGGTTTTGACCTAGGCTTTCA 59.824 45.455 9.30 2.05 0.00 2.69
52 53 2.557056 GGGTTTTGACCTAGGCTTTCAC 59.443 50.000 9.30 0.25 0.00 3.18
53 54 2.557056 GGTTTTGACCTAGGCTTTCACC 59.443 50.000 9.30 6.48 0.00 4.02
54 55 2.557056 GTTTTGACCTAGGCTTTCACCC 59.443 50.000 9.30 0.00 0.00 4.61
55 56 1.742308 TTGACCTAGGCTTTCACCCT 58.258 50.000 9.30 0.00 36.47 4.34
56 57 0.984230 TGACCTAGGCTTTCACCCTG 59.016 55.000 9.30 0.00 33.88 4.45
57 58 1.276622 GACCTAGGCTTTCACCCTGA 58.723 55.000 9.30 0.00 33.88 3.86
58 59 1.628846 GACCTAGGCTTTCACCCTGAA 59.371 52.381 9.30 0.00 34.03 3.02
59 60 1.630878 ACCTAGGCTTTCACCCTGAAG 59.369 52.381 9.30 0.00 37.70 3.02
60 61 1.680249 CCTAGGCTTTCACCCTGAAGC 60.680 57.143 0.00 0.00 37.70 3.86
61 62 1.280421 CTAGGCTTTCACCCTGAAGCT 59.720 52.381 7.85 0.00 37.70 3.74
62 63 1.362224 AGGCTTTCACCCTGAAGCTA 58.638 50.000 7.85 0.00 37.70 3.32
63 64 1.280421 AGGCTTTCACCCTGAAGCTAG 59.720 52.381 7.85 0.00 37.70 3.42
64 65 1.279271 GGCTTTCACCCTGAAGCTAGA 59.721 52.381 7.85 0.00 37.70 2.43
65 66 2.626840 GCTTTCACCCTGAAGCTAGAG 58.373 52.381 0.00 0.00 37.70 2.43
66 67 2.027653 GCTTTCACCCTGAAGCTAGAGT 60.028 50.000 0.00 0.00 37.70 3.24
67 68 3.855858 CTTTCACCCTGAAGCTAGAGTC 58.144 50.000 0.00 0.00 37.70 3.36
68 69 1.464734 TCACCCTGAAGCTAGAGTCG 58.535 55.000 0.00 0.00 0.00 4.18
69 70 0.457851 CACCCTGAAGCTAGAGTCGG 59.542 60.000 0.00 0.00 0.00 4.79
70 71 0.684805 ACCCTGAAGCTAGAGTCGGG 60.685 60.000 12.13 12.13 39.64 5.14
71 72 0.684805 CCCTGAAGCTAGAGTCGGGT 60.685 60.000 16.01 0.00 38.46 5.28
72 73 0.457851 CCTGAAGCTAGAGTCGGGTG 59.542 60.000 11.22 0.00 35.81 4.61
73 74 0.179124 CTGAAGCTAGAGTCGGGTGC 60.179 60.000 0.00 0.00 0.00 5.01
74 75 0.898326 TGAAGCTAGAGTCGGGTGCA 60.898 55.000 0.00 0.00 0.00 4.57
75 76 0.458716 GAAGCTAGAGTCGGGTGCAC 60.459 60.000 8.80 8.80 0.00 4.57
76 77 2.202623 GCTAGAGTCGGGTGCACG 60.203 66.667 11.45 0.00 0.00 5.34
77 78 2.697761 GCTAGAGTCGGGTGCACGA 61.698 63.158 11.45 2.50 41.13 4.35
78 79 1.429825 CTAGAGTCGGGTGCACGAG 59.570 63.158 11.45 7.32 44.42 4.18
80 81 0.036105 TAGAGTCGGGTGCACGAGTA 60.036 55.000 11.45 0.00 45.69 2.59
81 82 0.892358 AGAGTCGGGTGCACGAGTAA 60.892 55.000 11.45 0.00 45.69 2.24
82 83 0.172803 GAGTCGGGTGCACGAGTAAT 59.827 55.000 11.45 0.00 45.69 1.89
83 84 1.402968 GAGTCGGGTGCACGAGTAATA 59.597 52.381 11.45 0.00 45.69 0.98
84 85 1.133790 AGTCGGGTGCACGAGTAATAC 59.866 52.381 11.45 2.14 44.05 1.89
85 86 0.457035 TCGGGTGCACGAGTAATACC 59.543 55.000 11.45 2.43 38.06 2.73
86 87 0.173935 CGGGTGCACGAGTAATACCA 59.826 55.000 11.45 0.00 35.47 3.25
87 88 1.648504 GGGTGCACGAGTAATACCAC 58.351 55.000 11.45 0.00 33.10 4.16
88 89 1.648504 GGTGCACGAGTAATACCACC 58.351 55.000 11.45 1.17 36.36 4.61
89 90 1.066716 GGTGCACGAGTAATACCACCA 60.067 52.381 11.45 0.00 41.68 4.17
90 91 2.419574 GGTGCACGAGTAATACCACCAT 60.420 50.000 11.45 0.00 41.68 3.55
91 92 2.864343 GTGCACGAGTAATACCACCATC 59.136 50.000 0.00 0.00 0.00 3.51
92 93 2.124903 GCACGAGTAATACCACCATCG 58.875 52.381 0.00 0.00 36.32 3.84
93 94 2.223641 GCACGAGTAATACCACCATCGA 60.224 50.000 6.10 0.00 34.46 3.59
94 95 3.369385 CACGAGTAATACCACCATCGAC 58.631 50.000 6.10 0.00 34.46 4.20
95 96 3.018856 ACGAGTAATACCACCATCGACA 58.981 45.455 6.10 0.00 34.46 4.35
96 97 3.635373 ACGAGTAATACCACCATCGACAT 59.365 43.478 6.10 0.00 34.46 3.06
97 98 4.227538 CGAGTAATACCACCATCGACATC 58.772 47.826 0.00 0.00 32.13 3.06
98 99 4.261447 CGAGTAATACCACCATCGACATCA 60.261 45.833 0.00 0.00 32.13 3.07
99 100 4.945246 AGTAATACCACCATCGACATCAC 58.055 43.478 0.00 0.00 0.00 3.06
100 101 3.904800 AATACCACCATCGACATCACA 57.095 42.857 0.00 0.00 0.00 3.58
101 102 2.665649 TACCACCATCGACATCACAC 57.334 50.000 0.00 0.00 0.00 3.82
102 103 0.684535 ACCACCATCGACATCACACA 59.315 50.000 0.00 0.00 0.00 3.72
103 104 1.278985 ACCACCATCGACATCACACAT 59.721 47.619 0.00 0.00 0.00 3.21
104 105 1.667212 CCACCATCGACATCACACATG 59.333 52.381 0.00 0.00 0.00 3.21
105 106 2.349590 CACCATCGACATCACACATGT 58.650 47.619 0.00 0.00 34.52 3.21
106 107 2.094734 CACCATCGACATCACACATGTG 59.905 50.000 24.25 24.25 46.91 3.21
107 108 2.289631 ACCATCGACATCACACATGTGT 60.290 45.455 25.76 25.76 45.76 3.72
108 109 2.743664 CCATCGACATCACACATGTGTT 59.256 45.455 28.64 14.72 45.76 3.32
109 110 3.425227 CCATCGACATCACACATGTGTTG 60.425 47.826 28.64 25.45 46.01 3.33
114 115 3.272439 CATCACACATGTGTTGTCACC 57.728 47.619 28.64 0.00 45.76 4.02
115 116 2.409948 TCACACATGTGTTGTCACCA 57.590 45.000 28.64 5.84 45.76 4.17
116 117 2.013400 TCACACATGTGTTGTCACCAC 58.987 47.619 28.64 0.00 45.76 4.16
117 118 1.065401 CACACATGTGTTGTCACCACC 59.935 52.381 28.64 0.00 42.83 4.61
118 119 1.340502 ACACATGTGTTGTCACCACCA 60.341 47.619 25.76 0.00 41.83 4.17
119 120 1.955778 CACATGTGTTGTCACCACCAT 59.044 47.619 18.03 0.00 43.26 3.55
120 121 2.361757 CACATGTGTTGTCACCACCATT 59.638 45.455 18.03 0.00 43.26 3.16
121 122 3.030291 ACATGTGTTGTCACCACCATTT 58.970 40.909 0.00 0.00 43.26 2.32
122 123 3.450457 ACATGTGTTGTCACCACCATTTT 59.550 39.130 0.00 0.00 43.26 1.82
123 124 4.081198 ACATGTGTTGTCACCACCATTTTT 60.081 37.500 0.00 0.00 43.26 1.94
142 143 5.689383 TTTTTCATGACTCCAACAGCTAC 57.311 39.130 0.00 0.00 0.00 3.58
143 144 4.350368 TTTCATGACTCCAACAGCTACA 57.650 40.909 0.00 0.00 0.00 2.74
144 145 4.558226 TTCATGACTCCAACAGCTACAT 57.442 40.909 0.00 0.00 0.00 2.29
145 146 3.865446 TCATGACTCCAACAGCTACATG 58.135 45.455 0.00 0.00 35.01 3.21
146 147 2.099141 TGACTCCAACAGCTACATGC 57.901 50.000 0.00 0.00 43.29 4.06
147 148 1.347378 TGACTCCAACAGCTACATGCA 59.653 47.619 0.00 0.00 45.94 3.96
148 149 2.224499 TGACTCCAACAGCTACATGCAA 60.224 45.455 0.00 0.00 45.94 4.08
149 150 3.012518 GACTCCAACAGCTACATGCAAT 58.987 45.455 0.00 0.00 45.94 3.56
161 162 2.761392 CATGCAATGTATGTCCACCG 57.239 50.000 3.07 0.00 40.20 4.94
162 163 1.024271 ATGCAATGTATGTCCACCGC 58.976 50.000 0.00 0.00 0.00 5.68
163 164 1.029408 TGCAATGTATGTCCACCGCC 61.029 55.000 0.00 0.00 0.00 6.13
164 165 2.013807 CAATGTATGTCCACCGCCG 58.986 57.895 0.00 0.00 0.00 6.46
165 166 1.817941 AATGTATGTCCACCGCCGC 60.818 57.895 0.00 0.00 0.00 6.53
166 167 2.252072 AATGTATGTCCACCGCCGCT 62.252 55.000 0.00 0.00 0.00 5.52
167 168 2.890474 GTATGTCCACCGCCGCTG 60.890 66.667 0.00 0.00 0.00 5.18
168 169 4.830765 TATGTCCACCGCCGCTGC 62.831 66.667 0.00 0.00 0.00 5.25
177 178 4.465512 CGCCGCTGCACAACCATC 62.466 66.667 0.00 0.00 37.32 3.51
178 179 4.120331 GCCGCTGCACAACCATCC 62.120 66.667 0.00 0.00 37.47 3.51
179 180 3.443045 CCGCTGCACAACCATCCC 61.443 66.667 0.00 0.00 0.00 3.85
180 181 2.360350 CGCTGCACAACCATCCCT 60.360 61.111 0.00 0.00 0.00 4.20
181 182 2.401766 CGCTGCACAACCATCCCTC 61.402 63.158 0.00 0.00 0.00 4.30
182 183 1.001641 GCTGCACAACCATCCCTCT 60.002 57.895 0.00 0.00 0.00 3.69
183 184 0.253044 GCTGCACAACCATCCCTCTA 59.747 55.000 0.00 0.00 0.00 2.43
184 185 1.133976 GCTGCACAACCATCCCTCTAT 60.134 52.381 0.00 0.00 0.00 1.98
185 186 2.569059 CTGCACAACCATCCCTCTATG 58.431 52.381 0.00 0.00 0.00 2.23
186 187 1.915489 TGCACAACCATCCCTCTATGT 59.085 47.619 0.00 0.00 0.00 2.29
187 188 2.092968 TGCACAACCATCCCTCTATGTC 60.093 50.000 0.00 0.00 0.00 3.06
188 189 2.092968 GCACAACCATCCCTCTATGTCA 60.093 50.000 0.00 0.00 0.00 3.58
189 190 3.622206 GCACAACCATCCCTCTATGTCAA 60.622 47.826 0.00 0.00 0.00 3.18
190 191 4.588899 CACAACCATCCCTCTATGTCAAA 58.411 43.478 0.00 0.00 0.00 2.69
191 192 4.396166 CACAACCATCCCTCTATGTCAAAC 59.604 45.833 0.00 0.00 0.00 2.93
192 193 3.933861 ACCATCCCTCTATGTCAAACC 57.066 47.619 0.00 0.00 0.00 3.27
193 194 2.170607 ACCATCCCTCTATGTCAAACCG 59.829 50.000 0.00 0.00 0.00 4.44
194 195 2.170607 CCATCCCTCTATGTCAAACCGT 59.829 50.000 0.00 0.00 0.00 4.83
195 196 3.458189 CATCCCTCTATGTCAAACCGTC 58.542 50.000 0.00 0.00 0.00 4.79
196 197 1.475280 TCCCTCTATGTCAAACCGTCG 59.525 52.381 0.00 0.00 0.00 5.12
197 198 1.203994 CCCTCTATGTCAAACCGTCGT 59.796 52.381 0.00 0.00 0.00 4.34
198 199 2.527100 CCTCTATGTCAAACCGTCGTC 58.473 52.381 0.00 0.00 0.00 4.20
199 200 2.527100 CTCTATGTCAAACCGTCGTCC 58.473 52.381 0.00 0.00 0.00 4.79
200 201 1.887854 TCTATGTCAAACCGTCGTCCA 59.112 47.619 0.00 0.00 0.00 4.02
201 202 2.494471 TCTATGTCAAACCGTCGTCCAT 59.506 45.455 0.00 0.00 0.00 3.41
202 203 3.695556 TCTATGTCAAACCGTCGTCCATA 59.304 43.478 0.00 0.00 0.00 2.74
203 204 2.357327 TGTCAAACCGTCGTCCATAG 57.643 50.000 0.00 0.00 0.00 2.23
204 205 1.614903 TGTCAAACCGTCGTCCATAGT 59.385 47.619 0.00 0.00 0.00 2.12
205 206 2.036217 TGTCAAACCGTCGTCCATAGTT 59.964 45.455 0.00 0.00 0.00 2.24
206 207 3.062042 GTCAAACCGTCGTCCATAGTTT 58.938 45.455 0.00 0.00 0.00 2.66
207 208 3.061322 TCAAACCGTCGTCCATAGTTTG 58.939 45.455 13.16 13.16 45.40 2.93
208 209 1.435577 AACCGTCGTCCATAGTTTGC 58.564 50.000 0.00 0.00 0.00 3.68
209 210 0.319083 ACCGTCGTCCATAGTTTGCA 59.681 50.000 0.00 0.00 0.00 4.08
210 211 1.066430 ACCGTCGTCCATAGTTTGCAT 60.066 47.619 0.00 0.00 0.00 3.96
211 212 1.593006 CCGTCGTCCATAGTTTGCATC 59.407 52.381 0.00 0.00 0.00 3.91
212 213 2.540515 CGTCGTCCATAGTTTGCATCT 58.459 47.619 0.00 0.00 0.00 2.90
213 214 2.535984 CGTCGTCCATAGTTTGCATCTC 59.464 50.000 0.00 0.00 0.00 2.75
214 215 3.521560 GTCGTCCATAGTTTGCATCTCA 58.478 45.455 0.00 0.00 0.00 3.27
215 216 3.553511 GTCGTCCATAGTTTGCATCTCAG 59.446 47.826 0.00 0.00 0.00 3.35
216 217 3.195610 TCGTCCATAGTTTGCATCTCAGT 59.804 43.478 0.00 0.00 0.00 3.41
217 218 3.308053 CGTCCATAGTTTGCATCTCAGTG 59.692 47.826 0.00 0.00 0.00 3.66
218 219 4.256920 GTCCATAGTTTGCATCTCAGTGT 58.743 43.478 0.00 0.00 0.00 3.55
219 220 4.331168 GTCCATAGTTTGCATCTCAGTGTC 59.669 45.833 0.00 0.00 0.00 3.67
220 221 3.308053 CCATAGTTTGCATCTCAGTGTCG 59.692 47.826 0.00 0.00 0.00 4.35
221 222 2.820059 AGTTTGCATCTCAGTGTCGA 57.180 45.000 0.00 0.00 0.00 4.20
222 223 3.111853 AGTTTGCATCTCAGTGTCGAA 57.888 42.857 0.00 0.00 0.00 3.71
223 224 3.062763 AGTTTGCATCTCAGTGTCGAAG 58.937 45.455 0.00 0.00 0.00 3.79
224 225 2.802816 GTTTGCATCTCAGTGTCGAAGT 59.197 45.455 0.00 0.00 0.00 3.01
225 226 2.354109 TGCATCTCAGTGTCGAAGTC 57.646 50.000 0.00 0.00 0.00 3.01
226 227 1.613437 TGCATCTCAGTGTCGAAGTCA 59.387 47.619 0.00 0.00 0.00 3.41
227 228 2.035832 TGCATCTCAGTGTCGAAGTCAA 59.964 45.455 0.00 0.00 0.00 3.18
228 229 2.410053 GCATCTCAGTGTCGAAGTCAAC 59.590 50.000 0.00 0.00 0.00 3.18
229 230 2.795175 TCTCAGTGTCGAAGTCAACC 57.205 50.000 0.00 0.00 0.00 3.77
230 231 2.028876 TCTCAGTGTCGAAGTCAACCA 58.971 47.619 0.00 0.00 0.00 3.67
231 232 2.128035 CTCAGTGTCGAAGTCAACCAC 58.872 52.381 0.00 0.00 0.00 4.16
232 233 1.202486 TCAGTGTCGAAGTCAACCACC 60.202 52.381 0.00 0.00 0.00 4.61
233 234 0.828022 AGTGTCGAAGTCAACCACCA 59.172 50.000 0.00 0.00 0.00 4.17
234 235 1.202533 AGTGTCGAAGTCAACCACCAG 60.203 52.381 0.00 0.00 0.00 4.00
235 236 1.116308 TGTCGAAGTCAACCACCAGA 58.884 50.000 0.00 0.00 0.00 3.86
236 237 1.691976 TGTCGAAGTCAACCACCAGAT 59.308 47.619 0.00 0.00 0.00 2.90
237 238 2.069273 GTCGAAGTCAACCACCAGATG 58.931 52.381 0.00 0.00 0.00 2.90
238 239 1.691976 TCGAAGTCAACCACCAGATGT 59.308 47.619 0.00 0.00 0.00 3.06
239 240 1.800586 CGAAGTCAACCACCAGATGTG 59.199 52.381 0.00 0.00 45.01 3.21
249 250 2.630889 ACCAGATGTGAAGGGAGAGA 57.369 50.000 0.00 0.00 0.00 3.10
250 251 2.183679 ACCAGATGTGAAGGGAGAGAC 58.816 52.381 0.00 0.00 0.00 3.36
251 252 1.484240 CCAGATGTGAAGGGAGAGACC 59.516 57.143 0.00 0.00 38.08 3.85
261 262 3.267908 GGAGAGACCCTCACGAAGA 57.732 57.895 0.00 0.00 43.76 2.87
262 263 0.812549 GGAGAGACCCTCACGAAGAC 59.187 60.000 0.00 0.00 43.76 3.01
263 264 0.812549 GAGAGACCCTCACGAAGACC 59.187 60.000 0.00 0.00 41.58 3.85
264 265 0.406361 AGAGACCCTCACGAAGACCT 59.594 55.000 0.00 0.00 32.06 3.85
265 266 1.203075 AGAGACCCTCACGAAGACCTT 60.203 52.381 0.00 0.00 32.06 3.50
266 267 1.619332 GAGACCCTCACGAAGACCTTT 59.381 52.381 0.00 0.00 0.00 3.11
267 268 1.619332 AGACCCTCACGAAGACCTTTC 59.381 52.381 0.00 0.00 0.00 2.62
268 269 1.343465 GACCCTCACGAAGACCTTTCA 59.657 52.381 0.00 0.00 0.00 2.69
269 270 1.344763 ACCCTCACGAAGACCTTTCAG 59.655 52.381 0.00 0.00 0.00 3.02
270 271 1.344763 CCCTCACGAAGACCTTTCAGT 59.655 52.381 0.00 0.00 0.00 3.41
271 272 2.408050 CCTCACGAAGACCTTTCAGTG 58.592 52.381 0.00 0.00 0.00 3.66
272 273 2.408050 CTCACGAAGACCTTTCAGTGG 58.592 52.381 0.00 0.00 0.00 4.00
273 274 2.035961 CTCACGAAGACCTTTCAGTGGA 59.964 50.000 0.00 0.00 0.00 4.02
274 275 2.632996 TCACGAAGACCTTTCAGTGGAT 59.367 45.455 0.00 0.00 0.00 3.41
275 276 2.738846 CACGAAGACCTTTCAGTGGATG 59.261 50.000 0.00 0.00 0.00 3.51
276 277 2.368875 ACGAAGACCTTTCAGTGGATGT 59.631 45.455 0.00 0.00 0.00 3.06
277 278 3.576982 ACGAAGACCTTTCAGTGGATGTA 59.423 43.478 0.00 0.00 0.00 2.29
278 279 3.927142 CGAAGACCTTTCAGTGGATGTAC 59.073 47.826 0.00 0.00 0.00 2.90
279 280 3.983044 AGACCTTTCAGTGGATGTACC 57.017 47.619 0.00 0.00 39.54 3.34
289 290 2.307363 GGATGTACCAATCCGCACG 58.693 57.895 0.00 0.00 36.99 5.34
290 291 0.461339 GGATGTACCAATCCGCACGT 60.461 55.000 0.00 0.00 36.99 4.49
291 292 1.202440 GGATGTACCAATCCGCACGTA 60.202 52.381 0.00 0.00 36.99 3.57
292 293 2.124903 GATGTACCAATCCGCACGTAG 58.875 52.381 0.00 0.00 0.00 3.51
293 294 0.458889 TGTACCAATCCGCACGTAGC 60.459 55.000 0.00 0.00 40.87 3.58
294 295 1.142314 TACCAATCCGCACGTAGCC 59.858 57.895 0.00 0.00 41.38 3.93
295 296 2.616786 TACCAATCCGCACGTAGCCG 62.617 60.000 0.00 0.00 41.38 5.52
296 297 3.925238 CAATCCGCACGTAGCCGC 61.925 66.667 0.00 0.00 41.38 6.53
302 303 3.188786 GCACGTAGCCGCCTCAAG 61.189 66.667 0.00 0.00 37.70 3.02
303 304 2.571757 CACGTAGCCGCCTCAAGA 59.428 61.111 0.00 0.00 37.70 3.02
304 305 1.080093 CACGTAGCCGCCTCAAGAA 60.080 57.895 0.00 0.00 37.70 2.52
305 306 1.080025 ACGTAGCCGCCTCAAGAAC 60.080 57.895 0.00 0.00 37.70 3.01
306 307 1.080093 CGTAGCCGCCTCAAGAACA 60.080 57.895 0.00 0.00 0.00 3.18
307 308 1.352156 CGTAGCCGCCTCAAGAACAC 61.352 60.000 0.00 0.00 0.00 3.32
308 309 1.019805 GTAGCCGCCTCAAGAACACC 61.020 60.000 0.00 0.00 0.00 4.16
309 310 1.476845 TAGCCGCCTCAAGAACACCA 61.477 55.000 0.00 0.00 0.00 4.17
310 311 1.896660 GCCGCCTCAAGAACACCAA 60.897 57.895 0.00 0.00 0.00 3.67
311 312 1.244019 GCCGCCTCAAGAACACCAAT 61.244 55.000 0.00 0.00 0.00 3.16
312 313 0.523072 CCGCCTCAAGAACACCAATG 59.477 55.000 0.00 0.00 0.00 2.82
313 314 1.522668 CGCCTCAAGAACACCAATGA 58.477 50.000 0.00 0.00 0.00 2.57
314 315 2.086869 CGCCTCAAGAACACCAATGAT 58.913 47.619 0.00 0.00 0.00 2.45
315 316 3.270027 CGCCTCAAGAACACCAATGATA 58.730 45.455 0.00 0.00 0.00 2.15
316 317 3.879295 CGCCTCAAGAACACCAATGATAT 59.121 43.478 0.00 0.00 0.00 1.63
317 318 4.336433 CGCCTCAAGAACACCAATGATATT 59.664 41.667 0.00 0.00 0.00 1.28
318 319 5.585390 GCCTCAAGAACACCAATGATATTG 58.415 41.667 0.00 0.00 0.00 1.90
319 320 5.450965 GCCTCAAGAACACCAATGATATTGG 60.451 44.000 16.80 16.80 44.91 3.16
320 321 5.450965 CCTCAAGAACACCAATGATATTGGC 60.451 44.000 17.99 4.62 43.23 4.52
321 322 4.096231 TCAAGAACACCAATGATATTGGCG 59.904 41.667 17.99 12.47 43.23 5.69
322 323 2.358898 AGAACACCAATGATATTGGCGC 59.641 45.455 17.99 0.00 43.23 6.53
323 324 0.662619 ACACCAATGATATTGGCGCG 59.337 50.000 17.99 0.00 43.23 6.86
324 325 0.943673 CACCAATGATATTGGCGCGA 59.056 50.000 12.10 0.00 43.23 5.87
325 326 0.944386 ACCAATGATATTGGCGCGAC 59.056 50.000 12.10 8.22 43.23 5.19
326 327 0.943673 CCAATGATATTGGCGCGACA 59.056 50.000 12.71 12.71 32.18 4.35
327 328 1.334059 CCAATGATATTGGCGCGACAC 60.334 52.381 18.02 2.83 32.18 3.67
328 329 0.944386 AATGATATTGGCGCGACACC 59.056 50.000 18.02 3.56 0.00 4.16
329 330 0.179059 ATGATATTGGCGCGACACCA 60.179 50.000 18.02 11.45 34.65 4.17
336 337 4.389576 GCGCGACACCAAGCCTTG 62.390 66.667 12.10 0.00 0.00 3.61
337 338 4.389576 CGCGACACCAAGCCTTGC 62.390 66.667 0.00 0.00 0.00 4.01
338 339 2.980233 GCGACACCAAGCCTTGCT 60.980 61.111 0.00 0.00 42.56 3.91
339 340 1.671054 GCGACACCAAGCCTTGCTA 60.671 57.895 0.00 0.00 38.25 3.49
340 341 1.639298 GCGACACCAAGCCTTGCTAG 61.639 60.000 0.00 0.00 38.25 3.42
341 342 0.037326 CGACACCAAGCCTTGCTAGA 60.037 55.000 0.00 0.00 38.25 2.43
342 343 1.406069 CGACACCAAGCCTTGCTAGAT 60.406 52.381 0.00 0.00 38.25 1.98
343 344 2.716217 GACACCAAGCCTTGCTAGATT 58.284 47.619 0.00 0.00 38.25 2.40
344 345 2.421424 GACACCAAGCCTTGCTAGATTG 59.579 50.000 0.00 1.77 38.25 2.67
345 346 2.040278 ACACCAAGCCTTGCTAGATTGA 59.960 45.455 12.28 0.00 38.25 2.57
346 347 3.285484 CACCAAGCCTTGCTAGATTGAT 58.715 45.455 12.28 0.00 38.25 2.57
347 348 3.314635 CACCAAGCCTTGCTAGATTGATC 59.685 47.826 12.28 0.00 38.25 2.92
348 349 2.547211 CCAAGCCTTGCTAGATTGATCG 59.453 50.000 12.28 0.00 38.25 3.69
349 350 3.461061 CAAGCCTTGCTAGATTGATCGA 58.539 45.455 0.00 0.00 38.25 3.59
350 351 4.063689 CAAGCCTTGCTAGATTGATCGAT 58.936 43.478 0.00 0.00 38.25 3.59
351 352 3.924144 AGCCTTGCTAGATTGATCGATC 58.076 45.455 18.72 18.72 36.99 3.69
352 353 2.999355 GCCTTGCTAGATTGATCGATCC 59.001 50.000 22.31 7.46 0.00 3.36
353 354 3.594134 CCTTGCTAGATTGATCGATCCC 58.406 50.000 22.31 11.48 0.00 3.85
354 355 3.594134 CTTGCTAGATTGATCGATCCCC 58.406 50.000 22.31 11.15 0.00 4.81
355 356 2.608623 TGCTAGATTGATCGATCCCCA 58.391 47.619 22.31 10.50 0.00 4.96
356 357 2.972021 TGCTAGATTGATCGATCCCCAA 59.028 45.455 22.31 11.38 0.00 4.12
357 358 3.244215 TGCTAGATTGATCGATCCCCAAC 60.244 47.826 22.31 9.44 0.00 3.77
358 359 3.007398 GCTAGATTGATCGATCCCCAACT 59.993 47.826 22.31 15.30 0.00 3.16
359 360 3.760580 AGATTGATCGATCCCCAACTC 57.239 47.619 22.31 7.69 0.00 3.01
360 361 2.370189 AGATTGATCGATCCCCAACTCC 59.630 50.000 22.31 4.93 0.00 3.85
361 362 0.837272 TTGATCGATCCCCAACTCCC 59.163 55.000 22.31 0.00 0.00 4.30
362 363 1.054406 TGATCGATCCCCAACTCCCC 61.054 60.000 22.31 0.00 0.00 4.81
363 364 1.004230 ATCGATCCCCAACTCCCCA 59.996 57.895 0.00 0.00 0.00 4.96
364 365 0.401979 ATCGATCCCCAACTCCCCAT 60.402 55.000 0.00 0.00 0.00 4.00
365 366 1.149174 CGATCCCCAACTCCCCATG 59.851 63.158 0.00 0.00 0.00 3.66
366 367 1.152673 GATCCCCAACTCCCCATGC 60.153 63.158 0.00 0.00 0.00 4.06
367 368 2.647003 GATCCCCAACTCCCCATGCC 62.647 65.000 0.00 0.00 0.00 4.40
368 369 3.350163 CCCCAACTCCCCATGCCT 61.350 66.667 0.00 0.00 0.00 4.75
369 370 2.276740 CCCAACTCCCCATGCCTC 59.723 66.667 0.00 0.00 0.00 4.70
370 371 2.124570 CCAACTCCCCATGCCTCG 60.125 66.667 0.00 0.00 0.00 4.63
371 372 2.825836 CAACTCCCCATGCCTCGC 60.826 66.667 0.00 0.00 0.00 5.03
372 373 4.115199 AACTCCCCATGCCTCGCC 62.115 66.667 0.00 0.00 0.00 5.54
377 378 4.569180 CCCATGCCTCGCCGGATT 62.569 66.667 5.05 0.00 33.16 3.01
378 379 3.282157 CCATGCCTCGCCGGATTG 61.282 66.667 5.05 0.00 33.16 2.67
379 380 2.203056 CATGCCTCGCCGGATTGA 60.203 61.111 5.05 0.00 33.16 2.57
380 381 1.598962 CATGCCTCGCCGGATTGAT 60.599 57.895 5.05 0.00 33.16 2.57
381 382 1.302033 ATGCCTCGCCGGATTGATC 60.302 57.895 5.05 0.00 33.16 2.92
382 383 3.038417 GCCTCGCCGGATTGATCG 61.038 66.667 5.05 0.00 33.16 3.69
383 384 2.728180 CCTCGCCGGATTGATCGA 59.272 61.111 5.05 1.74 33.16 3.59
384 385 1.290324 CCTCGCCGGATTGATCGAT 59.710 57.895 5.05 0.00 33.16 3.59
385 386 0.734253 CCTCGCCGGATTGATCGATC 60.734 60.000 18.72 18.72 33.16 3.69
386 387 0.734253 CTCGCCGGATTGATCGATCC 60.734 60.000 26.73 26.73 41.82 3.36
387 388 1.738099 CGCCGGATTGATCGATCCC 60.738 63.158 29.18 18.38 42.17 3.85
388 389 1.376037 GCCGGATTGATCGATCCCC 60.376 63.158 29.18 19.42 42.17 4.81
389 390 2.057830 CCGGATTGATCGATCCCCA 58.942 57.895 29.18 7.20 42.17 4.96
390 391 0.396435 CCGGATTGATCGATCCCCAA 59.604 55.000 29.18 11.38 42.17 4.12
391 392 1.512926 CGGATTGATCGATCCCCAAC 58.487 55.000 29.18 10.31 42.17 3.77
392 393 1.070758 CGGATTGATCGATCCCCAACT 59.929 52.381 29.18 0.00 42.17 3.16
393 394 2.772287 GGATTGATCGATCCCCAACTC 58.228 52.381 26.38 7.49 39.79 3.01
394 395 2.370189 GGATTGATCGATCCCCAACTCT 59.630 50.000 26.38 0.00 39.79 3.24
395 396 3.556004 GGATTGATCGATCCCCAACTCTC 60.556 52.174 26.38 6.02 39.79 3.20
396 397 1.414158 TGATCGATCCCCAACTCTCC 58.586 55.000 22.31 0.00 0.00 3.71
397 398 1.342975 TGATCGATCCCCAACTCTCCA 60.343 52.381 22.31 0.00 0.00 3.86
398 399 1.762957 GATCGATCCCCAACTCTCCAA 59.237 52.381 14.76 0.00 0.00 3.53
399 400 1.195115 TCGATCCCCAACTCTCCAAG 58.805 55.000 0.00 0.00 0.00 3.61
400 401 0.905357 CGATCCCCAACTCTCCAAGT 59.095 55.000 0.00 0.00 41.10 3.16
401 402 1.406069 CGATCCCCAACTCTCCAAGTG 60.406 57.143 0.00 0.00 38.58 3.16
402 403 1.909302 GATCCCCAACTCTCCAAGTGA 59.091 52.381 0.00 0.00 38.58 3.41
403 404 1.814429 TCCCCAACTCTCCAAGTGAA 58.186 50.000 0.00 0.00 38.58 3.18
404 405 2.131854 TCCCCAACTCTCCAAGTGAAA 58.868 47.619 0.00 0.00 38.58 2.69
405 406 2.106511 TCCCCAACTCTCCAAGTGAAAG 59.893 50.000 0.00 0.00 38.58 2.62
406 407 2.106511 CCCCAACTCTCCAAGTGAAAGA 59.893 50.000 0.00 0.00 38.58 2.52
407 408 3.406764 CCCAACTCTCCAAGTGAAAGAG 58.593 50.000 8.35 8.35 41.84 2.85
408 409 3.406764 CCAACTCTCCAAGTGAAAGAGG 58.593 50.000 12.46 0.00 40.68 3.69
409 410 3.406764 CAACTCTCCAAGTGAAAGAGGG 58.593 50.000 12.46 0.00 40.68 4.30
410 411 2.977808 ACTCTCCAAGTGAAAGAGGGA 58.022 47.619 12.46 0.00 40.68 4.20
411 412 2.903135 ACTCTCCAAGTGAAAGAGGGAG 59.097 50.000 12.46 0.00 45.15 4.30
414 415 4.357918 CTCCAAGTGAAAGAGGGAGAAA 57.642 45.455 0.00 0.00 46.38 2.52
415 416 4.916183 CTCCAAGTGAAAGAGGGAGAAAT 58.084 43.478 0.00 0.00 46.38 2.17
416 417 5.320277 CTCCAAGTGAAAGAGGGAGAAATT 58.680 41.667 0.00 0.00 46.38 1.82
417 418 5.316987 TCCAAGTGAAAGAGGGAGAAATTC 58.683 41.667 0.00 0.00 0.00 2.17
418 419 4.460731 CCAAGTGAAAGAGGGAGAAATTCC 59.539 45.833 0.00 0.00 46.00 3.01
428 429 1.604278 GGAGAAATTCCCATAGCGTGC 59.396 52.381 0.00 0.00 40.37 5.34
429 430 1.604278 GAGAAATTCCCATAGCGTGCC 59.396 52.381 0.00 0.00 0.00 5.01
430 431 0.307760 GAAATTCCCATAGCGTGCCG 59.692 55.000 0.00 0.00 0.00 5.69
431 432 1.101049 AAATTCCCATAGCGTGCCGG 61.101 55.000 0.00 0.00 0.00 6.13
432 433 2.265467 AATTCCCATAGCGTGCCGGT 62.265 55.000 1.90 4.77 41.50 5.28
433 434 2.940890 ATTCCCATAGCGTGCCGGTG 62.941 60.000 1.90 0.00 38.30 4.94
445 446 4.954970 CCGGTGGCTGCCTTGTGT 62.955 66.667 21.03 0.00 0.00 3.72
446 447 3.663176 CGGTGGCTGCCTTGTGTG 61.663 66.667 21.03 0.00 0.00 3.82
447 448 3.982241 GGTGGCTGCCTTGTGTGC 61.982 66.667 21.03 1.43 0.00 4.57
448 449 3.982241 GTGGCTGCCTTGTGTGCC 61.982 66.667 21.03 0.00 45.10 5.01
449 450 4.208403 TGGCTGCCTTGTGTGCCT 62.208 61.111 21.03 0.00 45.11 4.75
450 451 3.677648 GGCTGCCTTGTGTGCCTG 61.678 66.667 12.43 0.00 41.92 4.85
451 452 4.353437 GCTGCCTTGTGTGCCTGC 62.353 66.667 0.00 0.00 0.00 4.85
452 453 3.677648 CTGCCTTGTGTGCCTGCC 61.678 66.667 0.00 0.00 0.00 4.85
455 456 4.601794 CCTTGTGTGCCTGCCCCA 62.602 66.667 0.00 0.00 0.00 4.96
456 457 2.283388 CTTGTGTGCCTGCCCCAT 60.283 61.111 0.00 0.00 0.00 4.00
457 458 2.283101 TTGTGTGCCTGCCCCATC 60.283 61.111 0.00 0.00 0.00 3.51
458 459 3.884704 TTGTGTGCCTGCCCCATCC 62.885 63.158 0.00 0.00 0.00 3.51
465 466 4.864334 CTGCCCCATCCGCCTCAC 62.864 72.222 0.00 0.00 0.00 3.51
467 468 4.864334 GCCCCATCCGCCTCACAG 62.864 72.222 0.00 0.00 0.00 3.66
468 469 3.083349 CCCCATCCGCCTCACAGA 61.083 66.667 0.00 0.00 0.00 3.41
469 470 2.503061 CCCATCCGCCTCACAGAG 59.497 66.667 0.00 0.00 0.00 3.35
470 471 2.060383 CCCATCCGCCTCACAGAGA 61.060 63.158 0.00 0.00 0.00 3.10
471 472 1.142748 CCATCCGCCTCACAGAGAC 59.857 63.158 0.00 0.00 0.00 3.36
472 473 1.607801 CCATCCGCCTCACAGAGACA 61.608 60.000 0.00 0.00 0.00 3.41
473 474 0.247460 CATCCGCCTCACAGAGACAA 59.753 55.000 0.00 0.00 0.00 3.18
474 475 0.247736 ATCCGCCTCACAGAGACAAC 59.752 55.000 0.00 0.00 0.00 3.32
475 476 1.734477 CCGCCTCACAGAGACAACG 60.734 63.158 0.00 0.00 0.00 4.10
476 477 2.375766 CGCCTCACAGAGACAACGC 61.376 63.158 0.00 0.00 0.00 4.84
477 478 2.375766 GCCTCACAGAGACAACGCG 61.376 63.158 3.53 3.53 0.00 6.01
478 479 1.007271 CCTCACAGAGACAACGCGT 60.007 57.895 5.58 5.58 0.00 6.01
479 480 1.278172 CCTCACAGAGACAACGCGTG 61.278 60.000 14.98 10.05 0.00 5.34
480 481 1.278172 CTCACAGAGACAACGCGTGG 61.278 60.000 14.98 14.06 0.00 4.94
481 482 2.029073 ACAGAGACAACGCGTGGG 59.971 61.111 19.66 14.07 0.00 4.61
482 483 3.414700 CAGAGACAACGCGTGGGC 61.415 66.667 19.66 16.65 0.00 5.36
483 484 3.923864 AGAGACAACGCGTGGGCA 61.924 61.111 24.20 0.00 39.92 5.36
484 485 2.742372 GAGACAACGCGTGGGCAT 60.742 61.111 24.20 6.71 39.92 4.40
485 486 3.027170 GAGACAACGCGTGGGCATG 62.027 63.158 24.20 14.58 39.92 4.06
486 487 3.047280 GACAACGCGTGGGCATGA 61.047 61.111 16.55 0.00 39.92 3.07
487 488 2.359850 ACAACGCGTGGGCATGAT 60.360 55.556 19.66 0.00 39.92 2.45
488 489 1.922135 GACAACGCGTGGGCATGATT 61.922 55.000 16.55 0.00 39.92 2.57
489 490 1.212490 CAACGCGTGGGCATGATTT 59.788 52.632 14.98 0.00 39.92 2.17
490 491 0.388391 CAACGCGTGGGCATGATTTT 60.388 50.000 14.98 0.00 39.92 1.82
491 492 0.388391 AACGCGTGGGCATGATTTTG 60.388 50.000 14.98 0.00 39.92 2.44
492 493 1.212490 CGCGTGGGCATGATTTTGT 59.788 52.632 0.00 0.00 39.92 2.83
493 494 0.388391 CGCGTGGGCATGATTTTGTT 60.388 50.000 0.00 0.00 39.92 2.83
494 495 1.794512 GCGTGGGCATGATTTTGTTT 58.205 45.000 0.00 0.00 39.62 2.83
495 496 1.726248 GCGTGGGCATGATTTTGTTTC 59.274 47.619 0.00 0.00 39.62 2.78
496 497 2.610232 GCGTGGGCATGATTTTGTTTCT 60.610 45.455 0.00 0.00 39.62 2.52
497 498 3.366883 GCGTGGGCATGATTTTGTTTCTA 60.367 43.478 0.00 0.00 39.62 2.10
498 499 4.414852 CGTGGGCATGATTTTGTTTCTAG 58.585 43.478 0.00 0.00 0.00 2.43
499 500 4.675146 CGTGGGCATGATTTTGTTTCTAGG 60.675 45.833 0.00 0.00 0.00 3.02
500 501 4.462483 GTGGGCATGATTTTGTTTCTAGGA 59.538 41.667 0.00 0.00 0.00 2.94
501 502 4.462483 TGGGCATGATTTTGTTTCTAGGAC 59.538 41.667 0.00 0.00 0.00 3.85
502 503 4.462483 GGGCATGATTTTGTTTCTAGGACA 59.538 41.667 0.00 0.00 0.00 4.02
503 504 5.393461 GGGCATGATTTTGTTTCTAGGACAG 60.393 44.000 0.00 0.00 0.00 3.51
504 505 5.098211 GCATGATTTTGTTTCTAGGACAGC 58.902 41.667 0.00 0.00 0.00 4.40
505 506 5.327091 CATGATTTTGTTTCTAGGACAGCG 58.673 41.667 0.00 0.00 0.00 5.18
506 507 4.637276 TGATTTTGTTTCTAGGACAGCGA 58.363 39.130 0.00 0.00 0.00 4.93
507 508 5.060506 TGATTTTGTTTCTAGGACAGCGAA 58.939 37.500 0.00 0.00 0.00 4.70
508 509 5.529430 TGATTTTGTTTCTAGGACAGCGAAA 59.471 36.000 0.00 0.00 0.00 3.46
509 510 5.821516 TTTTGTTTCTAGGACAGCGAAAA 57.178 34.783 0.00 0.00 0.00 2.29
510 511 5.821516 TTTGTTTCTAGGACAGCGAAAAA 57.178 34.783 0.00 0.00 0.00 1.94
511 512 5.418310 TTGTTTCTAGGACAGCGAAAAAG 57.582 39.130 0.00 0.00 0.00 2.27
512 513 3.813166 TGTTTCTAGGACAGCGAAAAAGG 59.187 43.478 0.00 0.00 0.00 3.11
513 514 2.094762 TCTAGGACAGCGAAAAAGGC 57.905 50.000 0.00 0.00 0.00 4.35
514 515 1.087501 CTAGGACAGCGAAAAAGGCC 58.912 55.000 0.00 0.00 0.00 5.19
515 516 0.672401 TAGGACAGCGAAAAAGGCCG 60.672 55.000 0.00 0.00 0.00 6.13
516 517 2.258726 GGACAGCGAAAAAGGCCGT 61.259 57.895 0.00 0.00 0.00 5.68
517 518 1.206831 GACAGCGAAAAAGGCCGTC 59.793 57.895 0.00 0.00 31.46 4.79
518 519 1.227853 ACAGCGAAAAAGGCCGTCT 60.228 52.632 0.00 0.00 0.00 4.18
519 520 1.207593 CAGCGAAAAAGGCCGTCTG 59.792 57.895 0.00 0.00 0.00 3.51
520 521 2.126850 GCGAAAAAGGCCGTCTGC 60.127 61.111 0.00 0.00 40.16 4.26
541 542 3.385384 CTGGCCCGCTGTCTGAGA 61.385 66.667 0.00 0.00 0.00 3.27
542 543 3.655810 CTGGCCCGCTGTCTGAGAC 62.656 68.421 5.47 5.47 0.00 3.36
543 544 3.386237 GGCCCGCTGTCTGAGACT 61.386 66.667 14.42 0.00 33.15 3.24
544 545 2.052690 GGCCCGCTGTCTGAGACTA 61.053 63.158 14.42 0.00 33.15 2.59
545 546 1.435515 GCCCGCTGTCTGAGACTAG 59.564 63.158 14.42 10.36 33.15 2.57
546 547 1.435515 CCCGCTGTCTGAGACTAGC 59.564 63.158 19.94 19.94 35.24 3.42
547 548 1.315981 CCCGCTGTCTGAGACTAGCA 61.316 60.000 25.35 4.57 36.92 3.49
548 549 0.100325 CCGCTGTCTGAGACTAGCAG 59.900 60.000 25.35 19.74 36.92 4.24
549 550 0.100325 CGCTGTCTGAGACTAGCAGG 59.900 60.000 25.35 13.58 36.92 4.85
550 551 0.179113 GCTGTCTGAGACTAGCAGGC 60.179 60.000 22.93 11.46 37.00 4.85
551 552 0.459489 CTGTCTGAGACTAGCAGGCC 59.541 60.000 14.42 0.00 37.18 5.19
552 553 0.251787 TGTCTGAGACTAGCAGGCCA 60.252 55.000 14.42 0.00 37.18 5.36
553 554 0.174617 GTCTGAGACTAGCAGGCCAC 59.825 60.000 5.01 0.00 31.98 5.01
554 555 0.972983 TCTGAGACTAGCAGGCCACC 60.973 60.000 5.01 0.00 34.20 4.61
555 556 2.290122 CTGAGACTAGCAGGCCACCG 62.290 65.000 5.01 0.00 0.00 4.94
556 557 3.077556 AGACTAGCAGGCCACCGG 61.078 66.667 5.01 0.00 0.00 5.28
557 558 3.075005 GACTAGCAGGCCACCGGA 61.075 66.667 9.46 0.00 0.00 5.14
558 559 3.077556 ACTAGCAGGCCACCGGAG 61.078 66.667 9.46 0.00 0.00 4.63
559 560 3.077556 CTAGCAGGCCACCGGAGT 61.078 66.667 9.46 0.00 0.00 3.85
560 561 3.075005 TAGCAGGCCACCGGAGTC 61.075 66.667 9.46 0.00 0.00 3.36
563 564 4.394712 CAGGCCACCGGAGTCCAC 62.395 72.222 9.46 0.00 0.00 4.02
564 565 4.954118 AGGCCACCGGAGTCCACA 62.954 66.667 9.46 0.00 0.00 4.17
565 566 4.699522 GGCCACCGGAGTCCACAC 62.700 72.222 9.46 0.00 0.00 3.82
583 584 3.134127 GCCGCCACCCAACAGATC 61.134 66.667 0.00 0.00 0.00 2.75
584 585 2.671070 CCGCCACCCAACAGATCT 59.329 61.111 0.00 0.00 0.00 2.75
585 586 1.746615 CCGCCACCCAACAGATCTG 60.747 63.158 21.37 21.37 0.00 2.90
587 588 1.300971 CGCCACCCAACAGATCTGTG 61.301 60.000 28.52 20.42 44.13 3.66
588 589 0.036732 GCCACCCAACAGATCTGTGA 59.963 55.000 28.52 0.00 44.13 3.58
589 590 1.340405 GCCACCCAACAGATCTGTGAT 60.340 52.381 28.52 11.74 44.13 3.06
590 591 2.362736 CCACCCAACAGATCTGTGATG 58.637 52.381 28.52 22.21 44.13 3.07
591 592 2.362736 CACCCAACAGATCTGTGATGG 58.637 52.381 28.84 28.84 44.13 3.51
593 594 1.386533 CCAACAGATCTGTGATGGGC 58.613 55.000 28.39 0.00 44.13 5.36
594 595 1.012086 CAACAGATCTGTGATGGGCG 58.988 55.000 28.52 8.04 44.13 6.13
595 596 0.615331 AACAGATCTGTGATGGGCGT 59.385 50.000 28.52 7.86 44.13 5.68
596 597 0.176680 ACAGATCTGTGATGGGCGTC 59.823 55.000 27.37 0.00 43.11 5.19
597 598 0.531532 CAGATCTGTGATGGGCGTCC 60.532 60.000 14.95 0.00 0.00 4.79
598 599 1.227674 GATCTGTGATGGGCGTCCC 60.228 63.158 2.12 5.67 45.71 4.46
931 991 4.090057 GTCGCCGCCACAAAGCTC 62.090 66.667 0.00 0.00 0.00 4.09
937 997 3.435186 GCCACAAAGCTCCGCCTC 61.435 66.667 0.00 0.00 0.00 4.70
938 998 3.121030 CCACAAAGCTCCGCCTCG 61.121 66.667 0.00 0.00 0.00 4.63
939 999 3.793144 CACAAAGCTCCGCCTCGC 61.793 66.667 0.00 0.00 0.00 5.03
2273 4258 1.000843 GAGTTGGACATTTTGGGCCAC 59.999 52.381 5.23 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.024176 ACCTAGCAATCGCGATGTTT 57.976 45.000 24.47 13.11 45.49 2.83
3 4 3.612860 GGTTATACCTAGCAATCGCGATG 59.387 47.826 24.47 17.21 38.16 3.84
4 5 3.257375 TGGTTATACCTAGCAATCGCGAT 59.743 43.478 17.62 17.62 40.66 4.58
5 6 2.624364 TGGTTATACCTAGCAATCGCGA 59.376 45.455 13.09 13.09 40.66 5.87
6 7 3.021269 TGGTTATACCTAGCAATCGCG 57.979 47.619 0.00 0.00 40.66 5.87
7 8 4.377897 AGTTGGTTATACCTAGCAATCGC 58.622 43.478 0.00 0.00 39.58 4.58
8 9 5.236478 CCAAGTTGGTTATACCTAGCAATCG 59.764 44.000 14.21 0.00 39.58 3.34
9 10 5.531287 CCCAAGTTGGTTATACCTAGCAATC 59.469 44.000 20.54 0.00 39.58 2.67
10 11 5.044402 ACCCAAGTTGGTTATACCTAGCAAT 60.044 40.000 20.54 0.00 39.58 3.56
11 12 4.290196 ACCCAAGTTGGTTATACCTAGCAA 59.710 41.667 20.54 0.00 39.58 3.91
12 13 3.847780 ACCCAAGTTGGTTATACCTAGCA 59.152 43.478 20.54 0.00 39.58 3.49
13 14 4.498894 ACCCAAGTTGGTTATACCTAGC 57.501 45.455 20.54 0.00 39.58 3.42
32 33 2.557056 GGTGAAAGCCTAGGTCAAAACC 59.443 50.000 11.31 9.70 46.87 3.27
33 34 3.917329 GGTGAAAGCCTAGGTCAAAAC 57.083 47.619 11.31 4.19 0.00 2.43
45 46 2.027653 ACTCTAGCTTCAGGGTGAAAGC 60.028 50.000 0.00 0.00 35.73 3.51
46 47 3.674682 CGACTCTAGCTTCAGGGTGAAAG 60.675 52.174 0.00 0.00 35.73 2.62
47 48 2.231478 CGACTCTAGCTTCAGGGTGAAA 59.769 50.000 0.00 0.00 35.73 2.69
48 49 1.819288 CGACTCTAGCTTCAGGGTGAA 59.181 52.381 0.00 0.00 34.79 3.18
49 50 1.464734 CGACTCTAGCTTCAGGGTGA 58.535 55.000 0.00 0.00 0.00 4.02
50 51 0.457851 CCGACTCTAGCTTCAGGGTG 59.542 60.000 0.00 0.00 0.00 4.61
51 52 0.684805 CCCGACTCTAGCTTCAGGGT 60.685 60.000 0.00 0.00 33.00 4.34
52 53 0.684805 ACCCGACTCTAGCTTCAGGG 60.685 60.000 0.00 1.43 42.82 4.45
53 54 0.457851 CACCCGACTCTAGCTTCAGG 59.542 60.000 0.00 0.00 0.00 3.86
54 55 0.179124 GCACCCGACTCTAGCTTCAG 60.179 60.000 0.00 0.00 0.00 3.02
55 56 0.898326 TGCACCCGACTCTAGCTTCA 60.898 55.000 0.00 0.00 0.00 3.02
56 57 0.458716 GTGCACCCGACTCTAGCTTC 60.459 60.000 5.22 0.00 0.00 3.86
57 58 1.592223 GTGCACCCGACTCTAGCTT 59.408 57.895 5.22 0.00 0.00 3.74
58 59 2.701780 CGTGCACCCGACTCTAGCT 61.702 63.158 12.15 0.00 0.00 3.32
59 60 2.202623 CGTGCACCCGACTCTAGC 60.203 66.667 12.15 0.00 0.00 3.42
60 61 1.306642 ACTCGTGCACCCGACTCTAG 61.307 60.000 12.15 0.00 32.57 2.43
61 62 0.036105 TACTCGTGCACCCGACTCTA 60.036 55.000 12.15 0.00 32.57 2.43
62 63 0.892358 TTACTCGTGCACCCGACTCT 60.892 55.000 12.15 0.00 32.57 3.24
63 64 0.172803 ATTACTCGTGCACCCGACTC 59.827 55.000 12.15 0.00 32.57 3.36
64 65 1.133790 GTATTACTCGTGCACCCGACT 59.866 52.381 12.15 0.00 32.57 4.18
65 66 1.553308 GTATTACTCGTGCACCCGAC 58.447 55.000 12.15 0.00 32.57 4.79
66 67 0.457035 GGTATTACTCGTGCACCCGA 59.543 55.000 12.15 5.13 35.22 5.14
67 68 0.173935 TGGTATTACTCGTGCACCCG 59.826 55.000 12.15 4.78 0.00 5.28
68 69 1.648504 GTGGTATTACTCGTGCACCC 58.351 55.000 12.15 4.32 0.00 4.61
69 70 1.066716 TGGTGGTATTACTCGTGCACC 60.067 52.381 12.15 10.54 0.00 5.01
70 71 2.373540 TGGTGGTATTACTCGTGCAC 57.626 50.000 6.82 6.82 0.00 4.57
71 72 2.480587 CGATGGTGGTATTACTCGTGCA 60.481 50.000 0.00 0.00 0.00 4.57
72 73 2.124903 CGATGGTGGTATTACTCGTGC 58.875 52.381 0.00 0.00 0.00 5.34
73 74 3.181494 TGTCGATGGTGGTATTACTCGTG 60.181 47.826 0.00 0.00 0.00 4.35
74 75 3.018856 TGTCGATGGTGGTATTACTCGT 58.981 45.455 0.00 0.00 0.00 4.18
75 76 3.703286 TGTCGATGGTGGTATTACTCG 57.297 47.619 0.00 0.00 0.00 4.18
76 77 4.982916 GTGATGTCGATGGTGGTATTACTC 59.017 45.833 0.00 0.00 0.00 2.59
77 78 4.404394 TGTGATGTCGATGGTGGTATTACT 59.596 41.667 0.00 0.00 0.00 2.24
78 79 4.506654 GTGTGATGTCGATGGTGGTATTAC 59.493 45.833 0.00 0.00 0.00 1.89
79 80 4.160626 TGTGTGATGTCGATGGTGGTATTA 59.839 41.667 0.00 0.00 0.00 0.98
80 81 3.055458 TGTGTGATGTCGATGGTGGTATT 60.055 43.478 0.00 0.00 0.00 1.89
81 82 2.499693 TGTGTGATGTCGATGGTGGTAT 59.500 45.455 0.00 0.00 0.00 2.73
82 83 1.896465 TGTGTGATGTCGATGGTGGTA 59.104 47.619 0.00 0.00 0.00 3.25
83 84 0.684535 TGTGTGATGTCGATGGTGGT 59.315 50.000 0.00 0.00 0.00 4.16
84 85 1.667212 CATGTGTGATGTCGATGGTGG 59.333 52.381 0.00 0.00 0.00 4.61
85 86 2.349590 ACATGTGTGATGTCGATGGTG 58.650 47.619 0.00 0.00 0.00 4.17
86 87 2.768253 ACATGTGTGATGTCGATGGT 57.232 45.000 0.00 0.00 0.00 3.55
95 96 2.618241 GTGGTGACAACACATGTGTGAT 59.382 45.455 31.17 21.79 45.90 3.06
96 97 2.013400 GTGGTGACAACACATGTGTGA 58.987 47.619 31.17 13.36 45.90 3.58
120 121 5.129634 TGTAGCTGTTGGAGTCATGAAAAA 58.870 37.500 0.00 0.00 0.00 1.94
121 122 4.713553 TGTAGCTGTTGGAGTCATGAAAA 58.286 39.130 0.00 0.00 0.00 2.29
122 123 4.350368 TGTAGCTGTTGGAGTCATGAAA 57.650 40.909 0.00 0.00 0.00 2.69
123 124 4.256110 CATGTAGCTGTTGGAGTCATGAA 58.744 43.478 0.00 0.00 33.42 2.57
124 125 3.865446 CATGTAGCTGTTGGAGTCATGA 58.135 45.455 0.00 0.00 33.42 3.07
125 126 2.353889 GCATGTAGCTGTTGGAGTCATG 59.646 50.000 0.00 0.00 41.15 3.07
126 127 2.026915 TGCATGTAGCTGTTGGAGTCAT 60.027 45.455 0.00 0.00 45.94 3.06
127 128 1.347378 TGCATGTAGCTGTTGGAGTCA 59.653 47.619 0.00 0.00 45.94 3.41
128 129 2.099141 TGCATGTAGCTGTTGGAGTC 57.901 50.000 0.00 0.00 45.94 3.36
129 130 2.566833 TTGCATGTAGCTGTTGGAGT 57.433 45.000 0.00 0.00 45.94 3.85
130 131 2.751259 ACATTGCATGTAGCTGTTGGAG 59.249 45.455 0.00 0.00 42.78 3.86
131 132 2.794103 ACATTGCATGTAGCTGTTGGA 58.206 42.857 0.00 0.00 42.78 3.53
141 142 2.016318 CGGTGGACATACATTGCATGT 58.984 47.619 2.07 2.07 46.92 3.21
142 143 1.268692 GCGGTGGACATACATTGCATG 60.269 52.381 0.00 0.00 0.00 4.06
143 144 1.024271 GCGGTGGACATACATTGCAT 58.976 50.000 0.00 0.00 0.00 3.96
144 145 1.029408 GGCGGTGGACATACATTGCA 61.029 55.000 0.00 0.00 0.00 4.08
145 146 1.727467 GGCGGTGGACATACATTGC 59.273 57.895 0.00 0.00 0.00 3.56
146 147 2.013807 CGGCGGTGGACATACATTG 58.986 57.895 0.00 0.00 0.00 2.82
147 148 1.817941 GCGGCGGTGGACATACATT 60.818 57.895 9.78 0.00 0.00 2.71
148 149 2.203015 GCGGCGGTGGACATACAT 60.203 61.111 9.78 0.00 0.00 2.29
149 150 3.387091 AGCGGCGGTGGACATACA 61.387 61.111 12.25 0.00 0.00 2.29
150 151 2.890474 CAGCGGCGGTGGACATAC 60.890 66.667 29.73 0.00 0.00 2.39
151 152 4.830765 GCAGCGGCGGTGGACATA 62.831 66.667 35.90 0.00 0.00 2.29
160 161 4.465512 GATGGTTGTGCAGCGGCG 62.466 66.667 0.51 0.51 45.35 6.46
161 162 4.120331 GGATGGTTGTGCAGCGGC 62.120 66.667 0.31 0.31 41.68 6.53
162 163 3.443045 GGGATGGTTGTGCAGCGG 61.443 66.667 0.00 0.00 0.00 5.52
163 164 2.360350 AGGGATGGTTGTGCAGCG 60.360 61.111 0.00 0.00 0.00 5.18
164 165 0.253044 TAGAGGGATGGTTGTGCAGC 59.747 55.000 0.00 0.00 0.00 5.25
165 166 2.092753 ACATAGAGGGATGGTTGTGCAG 60.093 50.000 0.00 0.00 0.00 4.41
166 167 1.915489 ACATAGAGGGATGGTTGTGCA 59.085 47.619 0.00 0.00 0.00 4.57
167 168 2.092968 TGACATAGAGGGATGGTTGTGC 60.093 50.000 0.00 0.00 0.00 4.57
168 169 3.912496 TGACATAGAGGGATGGTTGTG 57.088 47.619 0.00 0.00 0.00 3.33
169 170 4.567747 GGTTTGACATAGAGGGATGGTTGT 60.568 45.833 0.00 0.00 0.00 3.32
170 171 3.947834 GGTTTGACATAGAGGGATGGTTG 59.052 47.826 0.00 0.00 0.00 3.77
171 172 3.370527 CGGTTTGACATAGAGGGATGGTT 60.371 47.826 0.00 0.00 0.00 3.67
172 173 2.170607 CGGTTTGACATAGAGGGATGGT 59.829 50.000 0.00 0.00 0.00 3.55
173 174 2.170607 ACGGTTTGACATAGAGGGATGG 59.829 50.000 0.00 0.00 0.00 3.51
174 175 3.458189 GACGGTTTGACATAGAGGGATG 58.542 50.000 0.00 0.00 0.00 3.51
175 176 2.100916 CGACGGTTTGACATAGAGGGAT 59.899 50.000 0.00 0.00 0.00 3.85
176 177 1.475280 CGACGGTTTGACATAGAGGGA 59.525 52.381 0.00 0.00 0.00 4.20
177 178 1.203994 ACGACGGTTTGACATAGAGGG 59.796 52.381 0.00 0.00 0.00 4.30
178 179 2.527100 GACGACGGTTTGACATAGAGG 58.473 52.381 0.00 0.00 0.00 3.69
179 180 2.094906 TGGACGACGGTTTGACATAGAG 60.095 50.000 0.00 0.00 0.00 2.43
180 181 1.887854 TGGACGACGGTTTGACATAGA 59.112 47.619 0.00 0.00 0.00 1.98
181 182 2.357327 TGGACGACGGTTTGACATAG 57.643 50.000 0.00 0.00 0.00 2.23
182 183 3.444742 ACTATGGACGACGGTTTGACATA 59.555 43.478 0.00 0.00 0.00 2.29
183 184 2.232941 ACTATGGACGACGGTTTGACAT 59.767 45.455 0.00 0.00 0.00 3.06
184 185 1.614903 ACTATGGACGACGGTTTGACA 59.385 47.619 0.00 0.00 0.00 3.58
185 186 2.358939 ACTATGGACGACGGTTTGAC 57.641 50.000 0.00 0.00 0.00 3.18
186 187 3.061322 CAAACTATGGACGACGGTTTGA 58.939 45.455 15.58 0.00 45.18 2.69
187 188 2.412325 GCAAACTATGGACGACGGTTTG 60.412 50.000 16.05 16.05 45.16 2.93
188 189 1.802365 GCAAACTATGGACGACGGTTT 59.198 47.619 0.00 0.00 0.00 3.27
189 190 1.270412 TGCAAACTATGGACGACGGTT 60.270 47.619 0.00 0.00 0.00 4.44
190 191 0.319083 TGCAAACTATGGACGACGGT 59.681 50.000 0.00 0.00 0.00 4.83
191 192 1.593006 GATGCAAACTATGGACGACGG 59.407 52.381 0.00 0.00 29.34 4.79
192 193 2.535984 GAGATGCAAACTATGGACGACG 59.464 50.000 0.00 0.00 29.34 5.12
193 194 3.521560 TGAGATGCAAACTATGGACGAC 58.478 45.455 0.00 0.00 29.34 4.34
194 195 3.195610 ACTGAGATGCAAACTATGGACGA 59.804 43.478 0.00 0.00 29.34 4.20
195 196 3.308053 CACTGAGATGCAAACTATGGACG 59.692 47.826 0.00 0.00 29.34 4.79
196 197 4.256920 ACACTGAGATGCAAACTATGGAC 58.743 43.478 0.00 0.00 29.34 4.02
197 198 4.507710 GACACTGAGATGCAAACTATGGA 58.492 43.478 0.00 0.00 0.00 3.41
198 199 3.308053 CGACACTGAGATGCAAACTATGG 59.692 47.826 0.00 0.00 0.00 2.74
199 200 4.176271 TCGACACTGAGATGCAAACTATG 58.824 43.478 0.00 0.00 0.00 2.23
200 201 4.456280 TCGACACTGAGATGCAAACTAT 57.544 40.909 0.00 0.00 0.00 2.12
201 202 3.934457 TCGACACTGAGATGCAAACTA 57.066 42.857 0.00 0.00 0.00 2.24
202 203 2.820059 TCGACACTGAGATGCAAACT 57.180 45.000 0.00 0.00 0.00 2.66
203 204 2.802816 ACTTCGACACTGAGATGCAAAC 59.197 45.455 0.00 0.00 0.00 2.93
204 205 3.059884 GACTTCGACACTGAGATGCAAA 58.940 45.455 0.00 0.00 0.00 3.68
205 206 2.035832 TGACTTCGACACTGAGATGCAA 59.964 45.455 0.00 0.00 0.00 4.08
206 207 1.613437 TGACTTCGACACTGAGATGCA 59.387 47.619 0.00 0.00 0.00 3.96
207 208 2.354109 TGACTTCGACACTGAGATGC 57.646 50.000 0.00 0.00 0.00 3.91
208 209 2.989840 GGTTGACTTCGACACTGAGATG 59.010 50.000 0.00 0.00 31.82 2.90
209 210 2.628178 TGGTTGACTTCGACACTGAGAT 59.372 45.455 0.00 0.00 31.82 2.75
210 211 2.028876 TGGTTGACTTCGACACTGAGA 58.971 47.619 0.00 0.00 31.82 3.27
211 212 2.128035 GTGGTTGACTTCGACACTGAG 58.872 52.381 0.00 0.00 31.82 3.35
212 213 1.202486 GGTGGTTGACTTCGACACTGA 60.202 52.381 0.00 0.00 31.82 3.41
213 214 1.217882 GGTGGTTGACTTCGACACTG 58.782 55.000 0.00 0.00 31.82 3.66
214 215 0.828022 TGGTGGTTGACTTCGACACT 59.172 50.000 0.00 0.00 31.82 3.55
215 216 1.202486 TCTGGTGGTTGACTTCGACAC 60.202 52.381 0.00 0.00 31.82 3.67
216 217 1.116308 TCTGGTGGTTGACTTCGACA 58.884 50.000 0.00 0.00 31.82 4.35
217 218 2.069273 CATCTGGTGGTTGACTTCGAC 58.931 52.381 0.00 0.00 0.00 4.20
218 219 1.691976 ACATCTGGTGGTTGACTTCGA 59.308 47.619 0.00 0.00 0.00 3.71
219 220 1.800586 CACATCTGGTGGTTGACTTCG 59.199 52.381 0.00 0.00 44.04 3.79
230 231 2.183679 GTCTCTCCCTTCACATCTGGT 58.816 52.381 0.00 0.00 0.00 4.00
231 232 1.484240 GGTCTCTCCCTTCACATCTGG 59.516 57.143 0.00 0.00 0.00 3.86
232 233 2.977772 GGTCTCTCCCTTCACATCTG 57.022 55.000 0.00 0.00 0.00 2.90
243 244 0.812549 GTCTTCGTGAGGGTCTCTCC 59.187 60.000 0.00 0.00 41.76 3.71
244 245 0.812549 GGTCTTCGTGAGGGTCTCTC 59.187 60.000 0.00 0.00 42.74 3.20
245 246 0.406361 AGGTCTTCGTGAGGGTCTCT 59.594 55.000 0.00 0.00 0.00 3.10
246 247 1.258676 AAGGTCTTCGTGAGGGTCTC 58.741 55.000 0.00 0.00 0.00 3.36
247 248 1.619332 GAAAGGTCTTCGTGAGGGTCT 59.381 52.381 0.00 0.00 0.00 3.85
248 249 1.343465 TGAAAGGTCTTCGTGAGGGTC 59.657 52.381 0.00 0.00 0.00 4.46
249 250 1.344763 CTGAAAGGTCTTCGTGAGGGT 59.655 52.381 0.00 0.00 0.00 4.34
250 251 1.344763 ACTGAAAGGTCTTCGTGAGGG 59.655 52.381 0.00 0.00 39.30 4.30
251 252 2.408050 CACTGAAAGGTCTTCGTGAGG 58.592 52.381 0.00 0.00 39.30 3.86
252 253 2.035961 TCCACTGAAAGGTCTTCGTGAG 59.964 50.000 9.47 0.00 39.30 3.51
253 254 2.036387 TCCACTGAAAGGTCTTCGTGA 58.964 47.619 9.47 0.00 39.30 4.35
254 255 2.526304 TCCACTGAAAGGTCTTCGTG 57.474 50.000 0.00 0.00 39.30 4.35
255 256 2.368875 ACATCCACTGAAAGGTCTTCGT 59.631 45.455 0.00 0.00 39.30 3.85
256 257 3.045601 ACATCCACTGAAAGGTCTTCG 57.954 47.619 0.00 0.00 39.30 3.79
257 258 4.254492 GGTACATCCACTGAAAGGTCTTC 58.746 47.826 0.00 0.00 39.30 2.87
258 259 3.650942 TGGTACATCCACTGAAAGGTCTT 59.349 43.478 0.00 0.00 41.93 3.01
259 260 3.248024 TGGTACATCCACTGAAAGGTCT 58.752 45.455 0.00 0.00 41.93 3.85
260 261 3.695830 TGGTACATCCACTGAAAGGTC 57.304 47.619 0.00 0.00 41.93 3.85
270 271 0.461163 CGTGCGGATTGGTACATCCA 60.461 55.000 11.63 0.00 45.60 3.41
271 272 0.461339 ACGTGCGGATTGGTACATCC 60.461 55.000 2.70 2.70 39.30 3.51
272 273 2.124903 CTACGTGCGGATTGGTACATC 58.875 52.381 0.00 0.00 39.30 3.06
273 274 1.805120 GCTACGTGCGGATTGGTACAT 60.805 52.381 0.00 0.00 39.30 2.29
274 275 0.458889 GCTACGTGCGGATTGGTACA 60.459 55.000 0.00 0.00 0.00 2.90
275 276 1.149964 GGCTACGTGCGGATTGGTAC 61.150 60.000 0.00 0.00 44.05 3.34
276 277 1.142314 GGCTACGTGCGGATTGGTA 59.858 57.895 0.00 0.00 44.05 3.25
277 278 2.125269 GGCTACGTGCGGATTGGT 60.125 61.111 0.00 0.00 44.05 3.67
278 279 3.261951 CGGCTACGTGCGGATTGG 61.262 66.667 0.00 0.00 43.58 3.16
279 280 3.925238 GCGGCTACGTGCGGATTG 61.925 66.667 17.20 2.76 43.58 2.67
285 286 3.188786 CTTGAGGCGGCTACGTGC 61.189 66.667 13.24 0.00 43.45 5.34
286 287 1.080093 TTCTTGAGGCGGCTACGTG 60.080 57.895 13.24 2.75 43.45 4.49
287 288 1.080025 GTTCTTGAGGCGGCTACGT 60.080 57.895 13.24 0.00 43.45 3.57
288 289 1.080093 TGTTCTTGAGGCGGCTACG 60.080 57.895 13.24 3.09 44.63 3.51
289 290 1.019805 GGTGTTCTTGAGGCGGCTAC 61.020 60.000 13.24 6.69 0.00 3.58
290 291 1.295423 GGTGTTCTTGAGGCGGCTA 59.705 57.895 13.24 0.00 0.00 3.93
291 292 2.032681 GGTGTTCTTGAGGCGGCT 59.967 61.111 13.09 13.09 0.00 5.52
292 293 1.244019 ATTGGTGTTCTTGAGGCGGC 61.244 55.000 0.00 0.00 0.00 6.53
293 294 0.523072 CATTGGTGTTCTTGAGGCGG 59.477 55.000 0.00 0.00 0.00 6.13
294 295 1.522668 TCATTGGTGTTCTTGAGGCG 58.477 50.000 0.00 0.00 0.00 5.52
295 296 5.450965 CCAATATCATTGGTGTTCTTGAGGC 60.451 44.000 9.36 0.00 34.92 4.70
296 297 5.450965 GCCAATATCATTGGTGTTCTTGAGG 60.451 44.000 17.03 0.00 41.53 3.86
297 298 5.585390 GCCAATATCATTGGTGTTCTTGAG 58.415 41.667 17.03 0.00 41.53 3.02
298 299 4.096231 CGCCAATATCATTGGTGTTCTTGA 59.904 41.667 18.94 0.00 43.21 3.02
299 300 4.353737 CGCCAATATCATTGGTGTTCTTG 58.646 43.478 18.94 0.98 43.21 3.02
300 301 4.637483 CGCCAATATCATTGGTGTTCTT 57.363 40.909 18.94 0.00 43.21 2.52
306 307 0.944386 GTCGCGCCAATATCATTGGT 59.056 50.000 17.03 0.00 41.53 3.67
307 308 0.943673 TGTCGCGCCAATATCATTGG 59.056 50.000 12.63 12.63 42.37 3.16
308 309 1.334059 GGTGTCGCGCCAATATCATTG 60.334 52.381 0.00 0.00 33.65 2.82
309 310 0.944386 GGTGTCGCGCCAATATCATT 59.056 50.000 0.00 0.00 33.65 2.57
310 311 0.179059 TGGTGTCGCGCCAATATCAT 60.179 50.000 0.00 0.00 41.39 2.45
311 312 1.219393 TGGTGTCGCGCCAATATCA 59.781 52.632 0.00 0.00 41.39 2.15
312 313 4.118480 TGGTGTCGCGCCAATATC 57.882 55.556 0.00 0.00 41.39 1.63
319 320 4.389576 CAAGGCTTGGTGTCGCGC 62.390 66.667 19.55 0.00 0.00 6.86
320 321 4.389576 GCAAGGCTTGGTGTCGCG 62.390 66.667 27.25 0.00 0.00 5.87
321 322 1.639298 CTAGCAAGGCTTGGTGTCGC 61.639 60.000 35.06 17.94 42.14 5.19
322 323 0.037326 TCTAGCAAGGCTTGGTGTCG 60.037 55.000 35.06 24.00 42.14 4.35
323 324 2.409948 ATCTAGCAAGGCTTGGTGTC 57.590 50.000 35.06 16.73 42.14 3.67
324 325 2.040278 TCAATCTAGCAAGGCTTGGTGT 59.960 45.455 35.06 20.88 42.14 4.16
325 326 2.715046 TCAATCTAGCAAGGCTTGGTG 58.285 47.619 35.06 25.28 42.14 4.17
326 327 3.549794 GATCAATCTAGCAAGGCTTGGT 58.450 45.455 31.65 31.65 44.64 3.67
327 328 2.547211 CGATCAATCTAGCAAGGCTTGG 59.453 50.000 27.25 12.03 40.44 3.61
328 329 3.461061 TCGATCAATCTAGCAAGGCTTG 58.539 45.455 22.75 22.75 40.44 4.01
329 330 3.827008 TCGATCAATCTAGCAAGGCTT 57.173 42.857 0.00 0.00 40.44 4.35
330 331 3.306641 GGATCGATCAATCTAGCAAGGCT 60.307 47.826 25.93 0.00 43.41 4.58
331 332 2.999355 GGATCGATCAATCTAGCAAGGC 59.001 50.000 25.93 0.96 0.00 4.35
332 333 3.594134 GGGATCGATCAATCTAGCAAGG 58.406 50.000 25.93 0.00 0.00 3.61
333 334 3.007290 TGGGGATCGATCAATCTAGCAAG 59.993 47.826 25.93 0.00 0.00 4.01
334 335 2.972021 TGGGGATCGATCAATCTAGCAA 59.028 45.455 25.93 0.00 0.00 3.91
335 336 2.608623 TGGGGATCGATCAATCTAGCA 58.391 47.619 25.93 6.81 0.00 3.49
336 337 3.007398 AGTTGGGGATCGATCAATCTAGC 59.993 47.826 25.93 14.12 0.00 3.42
337 338 4.322349 GGAGTTGGGGATCGATCAATCTAG 60.322 50.000 25.93 0.00 0.00 2.43
338 339 3.578716 GGAGTTGGGGATCGATCAATCTA 59.421 47.826 25.93 10.54 0.00 1.98
339 340 2.370189 GGAGTTGGGGATCGATCAATCT 59.630 50.000 25.93 15.40 0.00 2.40
340 341 2.551071 GGGAGTTGGGGATCGATCAATC 60.551 54.545 25.93 13.89 0.00 2.67
341 342 1.421646 GGGAGTTGGGGATCGATCAAT 59.578 52.381 25.93 5.43 0.00 2.57
342 343 0.837272 GGGAGTTGGGGATCGATCAA 59.163 55.000 25.93 10.58 0.00 2.57
343 344 1.054406 GGGGAGTTGGGGATCGATCA 61.054 60.000 25.93 4.39 0.00 2.92
344 345 1.054406 TGGGGAGTTGGGGATCGATC 61.054 60.000 17.36 17.36 0.00 3.69
345 346 0.401979 ATGGGGAGTTGGGGATCGAT 60.402 55.000 0.00 0.00 0.00 3.59
346 347 1.004230 ATGGGGAGTTGGGGATCGA 59.996 57.895 0.00 0.00 0.00 3.59
347 348 1.149174 CATGGGGAGTTGGGGATCG 59.851 63.158 0.00 0.00 0.00 3.69
348 349 1.152673 GCATGGGGAGTTGGGGATC 60.153 63.158 0.00 0.00 0.00 3.36
349 350 2.704424 GGCATGGGGAGTTGGGGAT 61.704 63.158 0.00 0.00 0.00 3.85
350 351 3.346734 GGCATGGGGAGTTGGGGA 61.347 66.667 0.00 0.00 0.00 4.81
351 352 3.350163 AGGCATGGGGAGTTGGGG 61.350 66.667 0.00 0.00 0.00 4.96
352 353 2.276740 GAGGCATGGGGAGTTGGG 59.723 66.667 0.00 0.00 0.00 4.12
353 354 2.124570 CGAGGCATGGGGAGTTGG 60.125 66.667 0.00 0.00 0.00 3.77
354 355 2.825836 GCGAGGCATGGGGAGTTG 60.826 66.667 0.00 0.00 0.00 3.16
355 356 4.115199 GGCGAGGCATGGGGAGTT 62.115 66.667 0.00 0.00 0.00 3.01
360 361 4.569180 AATCCGGCGAGGCATGGG 62.569 66.667 9.30 0.00 40.77 4.00
361 362 3.282157 CAATCCGGCGAGGCATGG 61.282 66.667 9.30 0.00 40.77 3.66
362 363 1.572085 GATCAATCCGGCGAGGCATG 61.572 60.000 9.30 0.00 40.77 4.06
363 364 1.302033 GATCAATCCGGCGAGGCAT 60.302 57.895 9.30 0.00 40.77 4.40
364 365 2.108976 GATCAATCCGGCGAGGCA 59.891 61.111 9.30 0.00 40.77 4.75
365 366 2.771763 ATCGATCAATCCGGCGAGGC 62.772 60.000 9.30 0.00 40.77 4.70
366 367 0.734253 GATCGATCAATCCGGCGAGG 60.734 60.000 20.52 0.00 42.97 4.63
367 368 0.734253 GGATCGATCAATCCGGCGAG 60.734 60.000 25.93 0.00 36.14 5.03
368 369 1.289066 GGATCGATCAATCCGGCGA 59.711 57.895 25.93 0.00 36.14 5.54
369 370 1.738099 GGGATCGATCAATCCGGCG 60.738 63.158 25.93 0.00 45.32 6.46
370 371 1.376037 GGGGATCGATCAATCCGGC 60.376 63.158 25.93 7.33 45.32 6.13
371 372 0.396435 TTGGGGATCGATCAATCCGG 59.604 55.000 25.93 0.00 45.32 5.14
372 373 1.070758 AGTTGGGGATCGATCAATCCG 59.929 52.381 25.93 0.00 45.32 4.18
373 374 2.370189 AGAGTTGGGGATCGATCAATCC 59.630 50.000 25.93 21.81 43.90 3.01
374 375 3.556004 GGAGAGTTGGGGATCGATCAATC 60.556 52.174 25.93 14.10 0.00 2.67
375 376 2.370189 GGAGAGTTGGGGATCGATCAAT 59.630 50.000 25.93 5.43 0.00 2.57
376 377 1.762957 GGAGAGTTGGGGATCGATCAA 59.237 52.381 25.93 10.58 0.00 2.57
377 378 1.342975 TGGAGAGTTGGGGATCGATCA 60.343 52.381 25.93 4.39 0.00 2.92
378 379 1.414158 TGGAGAGTTGGGGATCGATC 58.586 55.000 17.36 17.36 0.00 3.69
379 380 1.765314 CTTGGAGAGTTGGGGATCGAT 59.235 52.381 0.00 0.00 0.00 3.59
380 381 1.195115 CTTGGAGAGTTGGGGATCGA 58.805 55.000 0.00 0.00 0.00 3.59
381 382 0.905357 ACTTGGAGAGTTGGGGATCG 59.095 55.000 0.00 0.00 33.92 3.69
382 383 1.909302 TCACTTGGAGAGTTGGGGATC 59.091 52.381 0.00 0.00 36.10 3.36
383 384 2.044793 TCACTTGGAGAGTTGGGGAT 57.955 50.000 0.00 0.00 36.10 3.85
384 385 1.814429 TTCACTTGGAGAGTTGGGGA 58.186 50.000 0.00 0.00 36.10 4.81
385 386 2.106511 TCTTTCACTTGGAGAGTTGGGG 59.893 50.000 0.00 0.00 36.10 4.96
386 387 3.406764 CTCTTTCACTTGGAGAGTTGGG 58.593 50.000 0.00 0.00 36.10 4.12
387 388 3.406764 CCTCTTTCACTTGGAGAGTTGG 58.593 50.000 0.00 0.00 36.10 3.77
388 389 3.071602 TCCCTCTTTCACTTGGAGAGTTG 59.928 47.826 0.00 0.00 36.10 3.16
389 390 3.318313 TCCCTCTTTCACTTGGAGAGTT 58.682 45.455 0.00 0.00 36.10 3.01
390 391 2.903135 CTCCCTCTTTCACTTGGAGAGT 59.097 50.000 0.00 0.00 44.34 3.24
391 392 3.169099 TCTCCCTCTTTCACTTGGAGAG 58.831 50.000 2.53 0.00 45.00 3.20
393 394 4.357918 TTTCTCCCTCTTTCACTTGGAG 57.642 45.455 0.00 0.00 43.21 3.86
394 395 5.316987 GAATTTCTCCCTCTTTCACTTGGA 58.683 41.667 0.00 0.00 0.00 3.53
395 396 4.460731 GGAATTTCTCCCTCTTTCACTTGG 59.539 45.833 0.00 0.00 38.44 3.61
396 397 5.635417 GGAATTTCTCCCTCTTTCACTTG 57.365 43.478 0.00 0.00 38.44 3.16
408 409 1.604278 GCACGCTATGGGAATTTCTCC 59.396 52.381 0.00 0.00 44.54 3.71
409 410 1.604278 GGCACGCTATGGGAATTTCTC 59.396 52.381 0.00 0.00 0.00 2.87
410 411 1.680338 GGCACGCTATGGGAATTTCT 58.320 50.000 0.00 0.00 0.00 2.52
428 429 4.954970 ACACAAGGCAGCCACCGG 62.955 66.667 15.80 0.00 33.69 5.28
429 430 3.663176 CACACAAGGCAGCCACCG 61.663 66.667 15.80 3.46 33.69 4.94
430 431 3.982241 GCACACAAGGCAGCCACC 61.982 66.667 15.80 0.00 0.00 4.61
431 432 3.982241 GGCACACAAGGCAGCCAC 61.982 66.667 15.80 0.00 46.26 5.01
434 435 4.353437 GCAGGCACACAAGGCAGC 62.353 66.667 0.00 0.00 39.21 5.25
435 436 3.677648 GGCAGGCACACAAGGCAG 61.678 66.667 0.00 0.00 36.37 4.85
438 439 3.892104 ATGGGGCAGGCACACAAGG 62.892 63.158 0.00 0.00 0.00 3.61
439 440 2.283388 ATGGGGCAGGCACACAAG 60.283 61.111 0.00 0.00 0.00 3.16
440 441 2.283101 GATGGGGCAGGCACACAA 60.283 61.111 0.00 0.00 0.00 3.33
441 442 4.365111 GGATGGGGCAGGCACACA 62.365 66.667 0.00 0.00 0.00 3.72
448 449 4.864334 GTGAGGCGGATGGGGCAG 62.864 72.222 0.00 0.00 34.40 4.85
450 451 4.864334 CTGTGAGGCGGATGGGGC 62.864 72.222 0.00 0.00 0.00 5.80
451 452 3.083349 TCTGTGAGGCGGATGGGG 61.083 66.667 0.00 0.00 0.00 4.96
452 453 2.060383 TCTCTGTGAGGCGGATGGG 61.060 63.158 0.00 0.00 0.00 4.00
453 454 1.142748 GTCTCTGTGAGGCGGATGG 59.857 63.158 0.00 0.00 0.00 3.51
454 455 0.247460 TTGTCTCTGTGAGGCGGATG 59.753 55.000 0.00 0.00 37.04 3.51
455 456 0.247736 GTTGTCTCTGTGAGGCGGAT 59.752 55.000 0.00 0.00 37.04 4.18
456 457 1.666011 GTTGTCTCTGTGAGGCGGA 59.334 57.895 0.00 0.00 37.04 5.54
457 458 1.734477 CGTTGTCTCTGTGAGGCGG 60.734 63.158 0.00 0.00 37.04 6.13
458 459 2.375766 GCGTTGTCTCTGTGAGGCG 61.376 63.158 0.00 0.00 37.04 5.52
459 460 2.375766 CGCGTTGTCTCTGTGAGGC 61.376 63.158 0.00 0.00 34.49 4.70
460 461 1.007271 ACGCGTTGTCTCTGTGAGG 60.007 57.895 5.58 0.00 0.00 3.86
461 462 1.278172 CCACGCGTTGTCTCTGTGAG 61.278 60.000 10.22 0.00 32.39 3.51
462 463 1.299850 CCACGCGTTGTCTCTGTGA 60.300 57.895 10.22 0.00 32.39 3.58
463 464 2.310233 CCCACGCGTTGTCTCTGTG 61.310 63.158 10.22 0.00 0.00 3.66
464 465 2.029073 CCCACGCGTTGTCTCTGT 59.971 61.111 10.22 0.00 0.00 3.41
465 466 3.414700 GCCCACGCGTTGTCTCTG 61.415 66.667 10.22 0.00 0.00 3.35
466 467 3.240134 ATGCCCACGCGTTGTCTCT 62.240 57.895 10.22 0.00 38.08 3.10
467 468 2.742372 ATGCCCACGCGTTGTCTC 60.742 61.111 10.22 0.00 38.08 3.36
468 469 2.803155 ATCATGCCCACGCGTTGTCT 62.803 55.000 10.22 0.00 38.08 3.41
469 470 1.922135 AATCATGCCCACGCGTTGTC 61.922 55.000 10.22 0.00 38.08 3.18
470 471 1.523154 AAATCATGCCCACGCGTTGT 61.523 50.000 10.22 0.00 38.08 3.32
471 472 0.388391 AAAATCATGCCCACGCGTTG 60.388 50.000 10.22 6.05 38.08 4.10
472 473 0.388391 CAAAATCATGCCCACGCGTT 60.388 50.000 10.22 0.00 38.08 4.84
473 474 1.212490 CAAAATCATGCCCACGCGT 59.788 52.632 5.58 5.58 38.08 6.01
474 475 0.388391 AACAAAATCATGCCCACGCG 60.388 50.000 3.53 3.53 38.08 6.01
475 476 1.726248 GAAACAAAATCATGCCCACGC 59.274 47.619 0.00 0.00 0.00 5.34
476 477 3.302365 AGAAACAAAATCATGCCCACG 57.698 42.857 0.00 0.00 0.00 4.94
477 478 4.462483 TCCTAGAAACAAAATCATGCCCAC 59.538 41.667 0.00 0.00 0.00 4.61
478 479 4.462483 GTCCTAGAAACAAAATCATGCCCA 59.538 41.667 0.00 0.00 0.00 5.36
479 480 4.462483 TGTCCTAGAAACAAAATCATGCCC 59.538 41.667 0.00 0.00 0.00 5.36
480 481 5.643379 TGTCCTAGAAACAAAATCATGCC 57.357 39.130 0.00 0.00 0.00 4.40
481 482 5.098211 GCTGTCCTAGAAACAAAATCATGC 58.902 41.667 0.00 0.00 0.00 4.06
482 483 5.122239 TCGCTGTCCTAGAAACAAAATCATG 59.878 40.000 0.00 0.00 0.00 3.07
483 484 5.245531 TCGCTGTCCTAGAAACAAAATCAT 58.754 37.500 0.00 0.00 0.00 2.45
484 485 4.637276 TCGCTGTCCTAGAAACAAAATCA 58.363 39.130 0.00 0.00 0.00 2.57
485 486 5.607119 TTCGCTGTCCTAGAAACAAAATC 57.393 39.130 0.00 0.00 0.00 2.17
486 487 6.385649 TTTTCGCTGTCCTAGAAACAAAAT 57.614 33.333 0.00 0.00 34.14 1.82
487 488 5.821516 TTTTCGCTGTCCTAGAAACAAAA 57.178 34.783 0.00 0.00 34.14 2.44
488 489 5.220970 CCTTTTTCGCTGTCCTAGAAACAAA 60.221 40.000 0.00 0.00 34.14 2.83
489 490 4.274950 CCTTTTTCGCTGTCCTAGAAACAA 59.725 41.667 0.00 0.00 34.14 2.83
490 491 3.813166 CCTTTTTCGCTGTCCTAGAAACA 59.187 43.478 0.00 0.00 34.14 2.83
491 492 3.365064 GCCTTTTTCGCTGTCCTAGAAAC 60.365 47.826 0.00 0.00 34.14 2.78
492 493 2.812011 GCCTTTTTCGCTGTCCTAGAAA 59.188 45.455 0.00 0.00 32.76 2.52
493 494 2.423577 GCCTTTTTCGCTGTCCTAGAA 58.576 47.619 0.00 0.00 0.00 2.10
494 495 1.338769 GGCCTTTTTCGCTGTCCTAGA 60.339 52.381 0.00 0.00 0.00 2.43
495 496 1.087501 GGCCTTTTTCGCTGTCCTAG 58.912 55.000 0.00 0.00 0.00 3.02
496 497 0.672401 CGGCCTTTTTCGCTGTCCTA 60.672 55.000 0.00 0.00 0.00 2.94
497 498 1.966451 CGGCCTTTTTCGCTGTCCT 60.966 57.895 0.00 0.00 0.00 3.85
498 499 2.258726 ACGGCCTTTTTCGCTGTCC 61.259 57.895 0.00 0.00 42.14 4.02
499 500 3.340789 ACGGCCTTTTTCGCTGTC 58.659 55.556 0.00 0.00 42.14 3.51
501 502 1.207593 CAGACGGCCTTTTTCGCTG 59.792 57.895 0.00 0.00 38.63 5.18
502 503 2.617274 GCAGACGGCCTTTTTCGCT 61.617 57.895 0.00 0.00 36.11 4.93
503 504 2.126850 GCAGACGGCCTTTTTCGC 60.127 61.111 0.00 0.00 36.11 4.70
524 525 3.385384 TCTCAGACAGCGGGCCAG 61.385 66.667 4.39 0.00 0.00 4.85
525 526 2.781431 TAGTCTCAGACAGCGGGCCA 62.781 60.000 7.77 0.00 34.60 5.36
526 527 2.010582 CTAGTCTCAGACAGCGGGCC 62.011 65.000 7.77 0.00 34.60 5.80
527 528 1.435515 CTAGTCTCAGACAGCGGGC 59.564 63.158 7.77 0.00 34.60 6.13
528 529 1.315981 TGCTAGTCTCAGACAGCGGG 61.316 60.000 18.53 2.73 38.52 6.13
529 530 0.100325 CTGCTAGTCTCAGACAGCGG 59.900 60.000 18.07 18.07 38.52 5.52
530 531 0.100325 CCTGCTAGTCTCAGACAGCG 59.900 60.000 18.53 14.40 38.52 5.18
531 532 0.179113 GCCTGCTAGTCTCAGACAGC 60.179 60.000 17.55 17.55 37.29 4.40
532 533 0.459489 GGCCTGCTAGTCTCAGACAG 59.541 60.000 7.77 3.83 34.60 3.51
533 534 0.251787 TGGCCTGCTAGTCTCAGACA 60.252 55.000 7.77 0.00 34.60 3.41
534 535 0.174617 GTGGCCTGCTAGTCTCAGAC 59.825 60.000 3.32 0.00 33.54 3.51
535 536 0.972983 GGTGGCCTGCTAGTCTCAGA 60.973 60.000 3.32 0.00 33.54 3.27
536 537 1.519719 GGTGGCCTGCTAGTCTCAG 59.480 63.158 3.32 0.00 0.00 3.35
537 538 2.351244 CGGTGGCCTGCTAGTCTCA 61.351 63.158 3.32 0.00 0.00 3.27
538 539 2.496817 CGGTGGCCTGCTAGTCTC 59.503 66.667 3.32 0.00 0.00 3.36
539 540 3.077556 CCGGTGGCCTGCTAGTCT 61.078 66.667 3.32 0.00 0.00 3.24
540 541 3.075005 TCCGGTGGCCTGCTAGTC 61.075 66.667 3.32 0.00 0.00 2.59
541 542 3.077556 CTCCGGTGGCCTGCTAGT 61.078 66.667 3.32 0.00 0.00 2.57
542 543 3.077556 ACTCCGGTGGCCTGCTAG 61.078 66.667 3.32 0.00 0.00 3.42
543 544 3.075005 GACTCCGGTGGCCTGCTA 61.075 66.667 3.32 0.00 0.00 3.49
546 547 4.394712 GTGGACTCCGGTGGCCTG 62.395 72.222 28.11 3.20 0.00 4.85
547 548 4.954118 TGTGGACTCCGGTGGCCT 62.954 66.667 28.11 0.00 0.00 5.19
548 549 4.699522 GTGTGGACTCCGGTGGCC 62.700 72.222 22.09 22.09 0.00 5.36
566 567 3.134127 GATCTGTTGGGTGGCGGC 61.134 66.667 0.00 0.00 0.00 6.53
567 568 1.746615 CAGATCTGTTGGGTGGCGG 60.747 63.158 14.95 0.00 0.00 6.13
568 569 1.003355 ACAGATCTGTTGGGTGGCG 60.003 57.895 22.89 0.00 41.83 5.69
569 570 0.036732 TCACAGATCTGTTGGGTGGC 59.963 55.000 25.84 0.00 42.83 5.01
570 571 2.362736 CATCACAGATCTGTTGGGTGG 58.637 52.381 25.84 13.41 42.83 4.61
571 572 2.362736 CCATCACAGATCTGTTGGGTG 58.637 52.381 28.39 22.49 42.83 4.61
572 573 2.795231 CCATCACAGATCTGTTGGGT 57.205 50.000 28.39 14.15 42.83 4.51
574 575 1.386533 GCCCATCACAGATCTGTTGG 58.613 55.000 28.84 28.84 42.83 3.77
575 576 1.012086 CGCCCATCACAGATCTGTTG 58.988 55.000 25.84 20.95 42.83 3.33
576 577 0.615331 ACGCCCATCACAGATCTGTT 59.385 50.000 25.84 10.04 42.83 3.16
577 578 0.176680 GACGCCCATCACAGATCTGT 59.823 55.000 22.89 22.89 46.17 3.41
578 579 0.531532 GGACGCCCATCACAGATCTG 60.532 60.000 21.37 21.37 0.00 2.90
579 580 1.690219 GGGACGCCCATCACAGATCT 61.690 60.000 9.72 0.00 44.65 2.75
580 581 1.227674 GGGACGCCCATCACAGATC 60.228 63.158 9.72 0.00 44.65 2.75
581 582 2.911143 GGGACGCCCATCACAGAT 59.089 61.111 9.72 0.00 44.65 2.90
914 974 4.090057 GAGCTTTGTGGCGGCGAC 62.090 66.667 12.98 9.31 37.29 5.19
997 1057 0.899720 TCTTTCCGTTCGCCCATAGT 59.100 50.000 0.00 0.00 0.00 2.12
1034 1124 3.721706 CTCCTCCCACACAGGCCC 61.722 72.222 0.00 0.00 35.39 5.80
2273 4258 3.970610 CGCTGCTTGAATAATTCATTCCG 59.029 43.478 0.00 0.00 42.17 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.