Multiple sequence alignment - TraesCS6D01G363100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G363100 chr6D 100.000 3959 0 0 1 3959 453653480 453649522 0.000000e+00 7312.0
1 TraesCS6D01G363100 chr6D 94.048 588 14 2 1 567 453732297 453732884 0.000000e+00 872.0
2 TraesCS6D01G363100 chr6D 94.231 52 3 0 134 185 453653425 453653374 3.280000e-11 80.5
3 TraesCS6D01G363100 chr6B 96.263 1231 41 2 2028 3254 688470515 688471744 0.000000e+00 2013.0
4 TraesCS6D01G363100 chr6B 93.002 1229 69 9 2028 3253 689032391 689031177 0.000000e+00 1777.0
5 TraesCS6D01G363100 chr6B 89.478 1302 72 33 626 1891 688469205 688470477 0.000000e+00 1585.0
6 TraesCS6D01G363100 chr6B 89.720 642 35 15 586 1217 689033806 689033186 0.000000e+00 791.0
7 TraesCS6D01G363100 chr6B 94.955 337 17 0 1565 1901 689032842 689032506 2.710000e-146 529.0
8 TraesCS6D01G363100 chr6B 93.891 311 15 1 1262 1568 689033192 689032882 2.150000e-127 466.0
9 TraesCS6D01G363100 chr6B 83.585 463 34 19 134 567 101698623 101699072 2.870000e-106 396.0
10 TraesCS6D01G363100 chr6B 88.618 123 6 1 1 115 101698560 101698682 4.120000e-30 143.0
11 TraesCS6D01G363100 chr6B 100.000 42 0 0 586 627 688468059 688468100 1.180000e-10 78.7
12 TraesCS6D01G363100 chr6A 95.840 1226 42 3 2028 3253 599830979 599829763 0.000000e+00 1973.0
13 TraesCS6D01G363100 chr6A 92.362 707 36 9 882 1572 599832170 599831466 0.000000e+00 990.0
14 TraesCS6D01G363100 chr6A 93.931 346 19 2 1558 1902 599831435 599831091 4.530000e-144 521.0
15 TraesCS6D01G363100 chr6A 93.385 257 15 2 586 841 599832425 599832170 2.890000e-101 379.0
16 TraesCS6D01G363100 chr5D 99.013 709 7 0 3251 3959 499745681 499746389 0.000000e+00 1271.0
17 TraesCS6D01G363100 chr5D 98.440 705 10 1 3255 3959 560418074 560417371 0.000000e+00 1240.0
18 TraesCS6D01G363100 chr5D 98.300 706 10 2 3255 3959 47083319 47084023 0.000000e+00 1236.0
19 TraesCS6D01G363100 chr1D 98.723 705 8 1 3255 3959 391736219 391736922 0.000000e+00 1251.0
20 TraesCS6D01G363100 chr7D 98.451 710 10 1 3251 3959 266019650 266018941 0.000000e+00 1249.0
21 TraesCS6D01G363100 chr7D 98.300 706 10 2 3254 3959 615765409 615764706 0.000000e+00 1236.0
22 TraesCS6D01G363100 chr7D 83.007 459 37 21 137 567 625345945 625345500 1.040000e-100 377.0
23 TraesCS6D01G363100 chr7D 86.179 123 9 1 1 115 625346011 625345889 4.150000e-25 126.0
24 TraesCS6D01G363100 chr2D 98.449 709 11 0 3251 3959 3029590 3028882 0.000000e+00 1249.0
25 TraesCS6D01G363100 chr4D 98.440 705 9 2 3255 3959 111582348 111583050 0.000000e+00 1240.0
26 TraesCS6D01G363100 chr3D 98.440 705 10 1 3255 3959 405310317 405311020 0.000000e+00 1240.0
27 TraesCS6D01G363100 chr3D 77.459 905 193 10 2060 2955 307881617 307882519 7.530000e-147 531.0
28 TraesCS6D01G363100 chr3D 84.954 545 46 15 1 535 1144965 1144447 1.630000e-143 520.0
29 TraesCS6D01G363100 chr3D 76.721 915 179 27 2055 2950 610805045 610804146 2.770000e-131 479.0
30 TraesCS6D01G363100 chr3D 76.413 814 160 25 1099 1895 307880108 307880906 1.020000e-110 411.0
31 TraesCS6D01G363100 chr3D 79.286 420 83 3 1105 1522 307796095 307795678 1.390000e-74 291.0
32 TraesCS6D01G363100 chr4A 92.120 533 21 2 56 567 613683853 613683321 0.000000e+00 732.0
33 TraesCS6D01G363100 chr4A 97.778 90 2 0 1 90 613683933 613683844 5.300000e-34 156.0
34 TraesCS6D01G363100 chr4A 98.361 61 1 0 125 185 613683862 613683802 1.500000e-19 108.0
35 TraesCS6D01G363100 chr4A 80.870 115 18 3 2287 2399 602270396 602270284 1.960000e-13 87.9
36 TraesCS6D01G363100 chr1A 87.609 573 37 15 1 565 565122727 565122181 5.580000e-178 634.0
37 TraesCS6D01G363100 chr1A 82.571 459 38 21 137 566 16309439 16308994 2.250000e-97 366.0
38 TraesCS6D01G363100 chr2B 85.839 572 44 17 1 566 705670619 705670079 1.230000e-159 573.0
39 TraesCS6D01G363100 chr2B 77.143 910 193 14 2062 2960 222143176 222144081 7.590000e-142 514.0
40 TraesCS6D01G363100 chr2B 93.902 82 4 1 56 136 705670494 705670413 5.370000e-24 122.0
41 TraesCS6D01G363100 chr2B 91.011 89 8 0 44 132 26524615 26524527 1.930000e-23 121.0
42 TraesCS6D01G363100 chr2B 91.358 81 7 0 52 132 26513026 26512946 1.160000e-20 111.0
43 TraesCS6D01G363100 chr2B 100.000 54 0 0 132 185 705670574 705670521 2.520000e-17 100.0
44 TraesCS6D01G363100 chr2B 98.077 52 1 0 134 185 26524603 26524552 1.520000e-14 91.6
45 TraesCS6D01G363100 chr3A 93.803 355 13 3 212 566 742893413 742893068 3.500000e-145 525.0
46 TraesCS6D01G363100 chr3A 76.380 906 201 12 2060 2955 427193143 427194045 3.580000e-130 475.0
47 TraesCS6D01G363100 chr3A 77.206 816 147 29 1099 1895 427191638 427192433 1.310000e-119 440.0
48 TraesCS6D01G363100 chr3A 79.762 420 81 3 1105 1522 427092735 427092318 6.430000e-78 302.0
49 TraesCS6D01G363100 chr3B 76.810 815 158 27 1099 1897 413865901 413865102 2.830000e-116 429.0
50 TraesCS6D01G363100 chr3B 79.097 421 88 0 1099 1519 413969662 413970082 1.390000e-74 291.0
51 TraesCS6D01G363100 chr3B 86.047 86 12 0 2314 2399 413993198 413993283 4.210000e-15 93.5
52 TraesCS6D01G363100 chr7B 83.772 456 35 21 134 566 41060994 41061433 2.870000e-106 396.0
53 TraesCS6D01G363100 chr7B 80.149 403 41 24 79 450 710733275 710732881 8.440000e-67 265.0
54 TraesCS6D01G363100 chr7B 86.992 123 8 1 1 115 41060931 41061053 8.930000e-27 132.0
55 TraesCS6D01G363100 chr1B 83.369 463 35 22 134 567 287826143 287826592 1.330000e-104 390.0
56 TraesCS6D01G363100 chr1B 86.992 123 8 1 1 115 287826080 287826202 8.930000e-27 132.0
57 TraesCS6D01G363100 chr7A 87.805 123 7 1 1 115 668785616 668785494 1.920000e-28 137.0
58 TraesCS6D01G363100 chr2A 93.827 81 5 0 52 132 16835104 16835024 5.370000e-24 122.0
59 TraesCS6D01G363100 chr2A 100.000 54 0 0 132 185 16835102 16835049 2.520000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G363100 chr6D 453649522 453653480 3958 True 3696.250000 7312 97.115500 1 3959 2 chr6D.!!$R1 3958
1 TraesCS6D01G363100 chr6D 453732297 453732884 587 False 872.000000 872 94.048000 1 567 1 chr6D.!!$F1 566
2 TraesCS6D01G363100 chr6B 688468059 688471744 3685 False 1225.566667 2013 95.247000 586 3254 3 chr6B.!!$F2 2668
3 TraesCS6D01G363100 chr6B 689031177 689033806 2629 True 890.750000 1777 92.892000 586 3253 4 chr6B.!!$R1 2667
4 TraesCS6D01G363100 chr6B 101698560 101699072 512 False 269.500000 396 86.101500 1 567 2 chr6B.!!$F1 566
5 TraesCS6D01G363100 chr6A 599829763 599832425 2662 True 965.750000 1973 93.879500 586 3253 4 chr6A.!!$R1 2667
6 TraesCS6D01G363100 chr5D 499745681 499746389 708 False 1271.000000 1271 99.013000 3251 3959 1 chr5D.!!$F2 708
7 TraesCS6D01G363100 chr5D 560417371 560418074 703 True 1240.000000 1240 98.440000 3255 3959 1 chr5D.!!$R1 704
8 TraesCS6D01G363100 chr5D 47083319 47084023 704 False 1236.000000 1236 98.300000 3255 3959 1 chr5D.!!$F1 704
9 TraesCS6D01G363100 chr1D 391736219 391736922 703 False 1251.000000 1251 98.723000 3255 3959 1 chr1D.!!$F1 704
10 TraesCS6D01G363100 chr7D 266018941 266019650 709 True 1249.000000 1249 98.451000 3251 3959 1 chr7D.!!$R1 708
11 TraesCS6D01G363100 chr7D 615764706 615765409 703 True 1236.000000 1236 98.300000 3254 3959 1 chr7D.!!$R2 705
12 TraesCS6D01G363100 chr7D 625345500 625346011 511 True 251.500000 377 84.593000 1 567 2 chr7D.!!$R3 566
13 TraesCS6D01G363100 chr2D 3028882 3029590 708 True 1249.000000 1249 98.449000 3251 3959 1 chr2D.!!$R1 708
14 TraesCS6D01G363100 chr4D 111582348 111583050 702 False 1240.000000 1240 98.440000 3255 3959 1 chr4D.!!$F1 704
15 TraesCS6D01G363100 chr3D 405310317 405311020 703 False 1240.000000 1240 98.440000 3255 3959 1 chr3D.!!$F1 704
16 TraesCS6D01G363100 chr3D 1144447 1144965 518 True 520.000000 520 84.954000 1 535 1 chr3D.!!$R1 534
17 TraesCS6D01G363100 chr3D 610804146 610805045 899 True 479.000000 479 76.721000 2055 2950 1 chr3D.!!$R3 895
18 TraesCS6D01G363100 chr3D 307880108 307882519 2411 False 471.000000 531 76.936000 1099 2955 2 chr3D.!!$F2 1856
19 TraesCS6D01G363100 chr4A 613683321 613683933 612 True 332.000000 732 96.086333 1 567 3 chr4A.!!$R2 566
20 TraesCS6D01G363100 chr1A 565122181 565122727 546 True 634.000000 634 87.609000 1 565 1 chr1A.!!$R2 564
21 TraesCS6D01G363100 chr2B 222143176 222144081 905 False 514.000000 514 77.143000 2062 2960 1 chr2B.!!$F1 898
22 TraesCS6D01G363100 chr2B 705670079 705670619 540 True 265.000000 573 93.247000 1 566 3 chr2B.!!$R3 565
23 TraesCS6D01G363100 chr3A 427191638 427194045 2407 False 457.500000 475 76.793000 1099 2955 2 chr3A.!!$F1 1856
24 TraesCS6D01G363100 chr3B 413865102 413865901 799 True 429.000000 429 76.810000 1099 1897 1 chr3B.!!$R1 798
25 TraesCS6D01G363100 chr7B 41060931 41061433 502 False 264.000000 396 85.382000 1 566 2 chr7B.!!$F1 565
26 TraesCS6D01G363100 chr1B 287826080 287826592 512 False 261.000000 390 85.180500 1 567 2 chr1B.!!$F1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 2181 0.111061 TGGAATTCTGTGGCACTGCT 59.889 50.000 19.83 6.41 0.00 4.24 F
1786 3189 1.137872 CAGCAGCTACCTCGAAGGAAT 59.862 52.381 0.00 0.00 37.67 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1820 3223 0.320858 TAACTTCGGCCACAATGCGA 60.321 50.0 2.24 0.00 0.00 5.10 R
3179 5231 0.721718 GCGACATCTTAACAAGCGCT 59.278 50.0 2.64 2.64 39.84 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
329 472 4.318332 TGATGACGAACAAGCTGAAGATT 58.682 39.130 0.00 0.00 0.00 2.40
342 485 6.414408 AGCTGAAGATTAACATCAAGAACG 57.586 37.500 0.00 0.00 0.00 3.95
567 734 2.475685 GCCCGCGATCTTAAACTTTGAC 60.476 50.000 8.23 0.00 0.00 3.18
568 735 3.000727 CCCGCGATCTTAAACTTTGACT 58.999 45.455 8.23 0.00 0.00 3.41
569 736 4.178540 CCCGCGATCTTAAACTTTGACTA 58.821 43.478 8.23 0.00 0.00 2.59
570 737 4.628333 CCCGCGATCTTAAACTTTGACTAA 59.372 41.667 8.23 0.00 0.00 2.24
571 738 5.121142 CCCGCGATCTTAAACTTTGACTAAA 59.879 40.000 8.23 0.00 0.00 1.85
572 739 6.347888 CCCGCGATCTTAAACTTTGACTAAAA 60.348 38.462 8.23 0.00 0.00 1.52
573 740 7.073265 CCGCGATCTTAAACTTTGACTAAAAA 58.927 34.615 8.23 0.00 0.00 1.94
574 741 7.749126 CCGCGATCTTAAACTTTGACTAAAAAT 59.251 33.333 8.23 0.00 0.00 1.82
575 742 8.776802 CGCGATCTTAAACTTTGACTAAAAATC 58.223 33.333 0.00 0.00 0.00 2.17
576 743 9.607285 GCGATCTTAAACTTTGACTAAAAATCA 57.393 29.630 0.00 0.00 0.00 2.57
583 750 8.441312 AAACTTTGACTAAAAATCACTACCGA 57.559 30.769 0.00 0.00 0.00 4.69
584 751 8.441312 AACTTTGACTAAAAATCACTACCGAA 57.559 30.769 0.00 0.00 0.00 4.30
636 1909 7.148205 GCACTACGTCCAAAATCCCTATAAAAA 60.148 37.037 0.00 0.00 0.00 1.94
670 1943 1.285280 CTACATCCAACCTCCCCACA 58.715 55.000 0.00 0.00 0.00 4.17
718 1991 2.439507 ACAGGAAGCAGAGAGGAAACAA 59.560 45.455 0.00 0.00 0.00 2.83
814 2087 1.701031 TTCCTTGGGAGCAACGGACA 61.701 55.000 0.00 0.00 31.21 4.02
846 2123 2.698803 CATCGTTGACCAATCTGTCCA 58.301 47.619 0.00 0.00 34.25 4.02
849 2126 3.546724 TCGTTGACCAATCTGTCCAAAA 58.453 40.909 0.00 0.00 34.25 2.44
850 2127 3.563808 TCGTTGACCAATCTGTCCAAAAG 59.436 43.478 0.00 0.00 34.25 2.27
853 2130 3.295093 TGACCAATCTGTCCAAAAGCAA 58.705 40.909 0.00 0.00 34.25 3.91
854 2131 3.318839 TGACCAATCTGTCCAAAAGCAAG 59.681 43.478 0.00 0.00 34.25 4.01
855 2132 3.299503 ACCAATCTGTCCAAAAGCAAGT 58.700 40.909 0.00 0.00 0.00 3.16
856 2133 4.469657 ACCAATCTGTCCAAAAGCAAGTA 58.530 39.130 0.00 0.00 0.00 2.24
857 2134 4.278419 ACCAATCTGTCCAAAAGCAAGTAC 59.722 41.667 0.00 0.00 0.00 2.73
858 2135 4.321230 CCAATCTGTCCAAAAGCAAGTACC 60.321 45.833 0.00 0.00 0.00 3.34
876 2153 7.121315 GCAAGTACCAGAATCCTTAGACAAATT 59.879 37.037 0.00 0.00 0.00 1.82
904 2181 0.111061 TGGAATTCTGTGGCACTGCT 59.889 50.000 19.83 6.41 0.00 4.24
1017 2310 1.615392 GCAATGGTTCTTGGAGTGCTT 59.385 47.619 0.00 0.00 0.00 3.91
1410 2754 1.219393 CGAGAAGCTCCAGTTCCCC 59.781 63.158 0.00 0.00 0.00 4.81
1428 2772 3.699894 ACGCTGACCAGGCTCCTG 61.700 66.667 8.93 8.93 43.26 3.86
1664 3067 2.939103 GTGTTGTGAAGAGCTTGTGAGT 59.061 45.455 0.00 0.00 0.00 3.41
1720 3123 3.758931 GGTGGATGTTTGCCCGGC 61.759 66.667 1.04 1.04 0.00 6.13
1786 3189 1.137872 CAGCAGCTACCTCGAAGGAAT 59.862 52.381 0.00 0.00 37.67 3.01
1820 3223 4.291047 CAGTCTGTGCAAGCCGAT 57.709 55.556 0.00 0.00 0.00 4.18
1914 3705 7.767198 TCACCTTTCTAATAATTCCTGGTTACG 59.233 37.037 0.00 0.00 0.00 3.18
1915 3706 7.767198 CACCTTTCTAATAATTCCTGGTTACGA 59.233 37.037 0.00 0.00 0.00 3.43
1936 3948 0.529992 AGTACCGATTTAGCAGCGCC 60.530 55.000 2.29 0.00 0.00 6.53
1938 3950 0.108089 TACCGATTTAGCAGCGCCAA 60.108 50.000 2.29 0.00 0.00 4.52
1943 3955 1.134946 GATTTAGCAGCGCCAACCATT 59.865 47.619 2.29 0.00 0.00 3.16
2054 4066 3.660501 TGTACTGATATGCATCGGACC 57.339 47.619 0.19 0.00 39.58 4.46
2057 4069 3.777106 ACTGATATGCATCGGACCAAT 57.223 42.857 0.19 0.00 39.58 3.16
2453 4467 3.380320 ACGGCTTTAGCAAACTCAAAACT 59.620 39.130 3.88 0.00 44.36 2.66
2541 4589 4.954202 CCACTCTACTTGTAGGTGACCATA 59.046 45.833 20.50 0.00 0.00 2.74
2574 4622 0.462789 TTCTCCGTCTTTATCCGCCC 59.537 55.000 0.00 0.00 0.00 6.13
3030 5078 8.179615 GTGTTTAGTAGTTGGCCATGTAATAAC 58.820 37.037 6.09 7.15 0.00 1.89
3179 5231 4.700213 CCTTTTTCGCTATCCTTCCTTCAA 59.300 41.667 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
329 472 4.399618 AGCTAGCTCTCGTTCTTGATGTTA 59.600 41.667 12.68 0.00 0.00 2.41
567 734 9.124807 GGTTCATTTTTCGGTAGTGATTTTTAG 57.875 33.333 0.00 0.00 0.00 1.85
568 735 8.630917 TGGTTCATTTTTCGGTAGTGATTTTTA 58.369 29.630 0.00 0.00 0.00 1.52
569 736 7.493367 TGGTTCATTTTTCGGTAGTGATTTTT 58.507 30.769 0.00 0.00 0.00 1.94
570 737 7.045126 TGGTTCATTTTTCGGTAGTGATTTT 57.955 32.000 0.00 0.00 0.00 1.82
571 738 6.642707 TGGTTCATTTTTCGGTAGTGATTT 57.357 33.333 0.00 0.00 0.00 2.17
572 739 6.642707 TTGGTTCATTTTTCGGTAGTGATT 57.357 33.333 0.00 0.00 0.00 2.57
573 740 6.403200 CGATTGGTTCATTTTTCGGTAGTGAT 60.403 38.462 0.00 0.00 0.00 3.06
574 741 5.106869 CGATTGGTTCATTTTTCGGTAGTGA 60.107 40.000 0.00 0.00 0.00 3.41
575 742 5.086058 CGATTGGTTCATTTTTCGGTAGTG 58.914 41.667 0.00 0.00 0.00 2.74
576 743 4.758165 ACGATTGGTTCATTTTTCGGTAGT 59.242 37.500 0.00 0.00 0.00 2.73
577 744 5.086058 CACGATTGGTTCATTTTTCGGTAG 58.914 41.667 0.00 0.00 0.00 3.18
578 745 4.614078 GCACGATTGGTTCATTTTTCGGTA 60.614 41.667 0.00 0.00 0.00 4.02
579 746 3.855524 GCACGATTGGTTCATTTTTCGGT 60.856 43.478 0.00 0.00 0.00 4.69
580 747 2.661195 GCACGATTGGTTCATTTTTCGG 59.339 45.455 0.00 0.00 0.00 4.30
581 748 2.338228 CGCACGATTGGTTCATTTTTCG 59.662 45.455 0.00 0.00 0.00 3.46
582 749 3.305110 ACGCACGATTGGTTCATTTTTC 58.695 40.909 0.00 0.00 0.00 2.29
583 750 3.363341 ACGCACGATTGGTTCATTTTT 57.637 38.095 0.00 0.00 0.00 1.94
584 751 3.049206 CAACGCACGATTGGTTCATTTT 58.951 40.909 0.00 0.00 0.00 1.82
636 1909 5.016173 TGGATGTAGCACTGCCTTTTAATT 58.984 37.500 0.00 0.00 0.00 1.40
650 1923 0.107165 GTGGGGAGGTTGGATGTAGC 60.107 60.000 0.00 0.00 0.00 3.58
814 2087 0.521291 CAACGATGCCACGTCCATTT 59.479 50.000 5.80 0.00 45.83 2.32
846 2123 6.655425 GTCTAAGGATTCTGGTACTTGCTTTT 59.345 38.462 0.00 0.00 0.00 2.27
849 2126 4.777896 TGTCTAAGGATTCTGGTACTTGCT 59.222 41.667 0.00 0.00 0.00 3.91
850 2127 5.086104 TGTCTAAGGATTCTGGTACTTGC 57.914 43.478 0.00 0.00 0.00 4.01
853 2130 7.112779 CCAATTTGTCTAAGGATTCTGGTACT 58.887 38.462 0.00 0.00 0.00 2.73
854 2131 6.183360 GCCAATTTGTCTAAGGATTCTGGTAC 60.183 42.308 0.00 0.00 0.00 3.34
855 2132 5.885912 GCCAATTTGTCTAAGGATTCTGGTA 59.114 40.000 0.00 0.00 0.00 3.25
856 2133 4.706962 GCCAATTTGTCTAAGGATTCTGGT 59.293 41.667 0.00 0.00 0.00 4.00
857 2134 4.706476 TGCCAATTTGTCTAAGGATTCTGG 59.294 41.667 0.00 0.00 0.00 3.86
858 2135 5.393461 GGTGCCAATTTGTCTAAGGATTCTG 60.393 44.000 0.00 0.00 0.00 3.02
876 2153 1.894466 CACAGAATTCCAATGGTGCCA 59.106 47.619 0.65 0.00 0.00 4.92
904 2181 5.232463 GTTCGGCCACGGAATATATAGAAA 58.768 41.667 2.24 0.00 41.39 2.52
1017 2310 3.249189 GTGGCTGGGGGACTCACA 61.249 66.667 0.00 0.00 0.00 3.58
1092 2385 4.992511 GGCCGCCACCACGTGTAA 62.993 66.667 15.65 0.00 0.00 2.41
1410 2754 3.699894 AGGAGCCTGGTCAGCGTG 61.700 66.667 0.00 0.00 34.64 5.34
1542 2890 8.522542 AGTACAGTAGTCTGGTAAGGAATTAG 57.477 38.462 0.00 0.00 45.14 1.73
1720 3123 2.261671 CGGTGAGGGTCTGGAACG 59.738 66.667 0.00 0.00 0.00 3.95
1786 3189 3.055819 AGACTGCAGCTCGAAAATCCTTA 60.056 43.478 15.27 0.00 0.00 2.69
1820 3223 0.320858 TAACTTCGGCCACAATGCGA 60.321 50.000 2.24 0.00 0.00 5.10
1903 3308 2.086869 CGGTACTCTCGTAACCAGGAA 58.913 52.381 0.00 0.00 29.18 3.36
1906 3311 4.367386 AAATCGGTACTCTCGTAACCAG 57.633 45.455 0.00 0.00 29.18 4.00
1908 3313 4.201950 TGCTAAATCGGTACTCTCGTAACC 60.202 45.833 0.00 0.00 29.18 2.85
1914 3705 2.386249 CGCTGCTAAATCGGTACTCTC 58.614 52.381 0.00 0.00 0.00 3.20
1915 3706 1.536284 GCGCTGCTAAATCGGTACTCT 60.536 52.381 0.00 0.00 0.00 3.24
1922 3713 1.062525 GGTTGGCGCTGCTAAATCG 59.937 57.895 7.64 0.00 29.49 3.34
1943 3955 8.988064 ATACATTTTACACACACACACAAAAA 57.012 26.923 0.00 0.00 0.00 1.94
2453 4467 7.686438 AGTGCAATATCAAAATGTACTCACA 57.314 32.000 0.00 0.00 35.51 3.58
2541 4589 4.220163 AGACGGAGAACCTCGTAAAGAATT 59.780 41.667 0.00 0.00 39.88 2.17
2839 4887 5.657474 GAAATGTTGAAGGATCATGCACAT 58.343 37.500 0.00 0.00 36.54 3.21
3013 5061 5.329399 TGAAAGGTTATTACATGGCCAACT 58.671 37.500 10.96 0.00 0.00 3.16
3030 5078 7.921786 TTCAAACATCTGTAGGTATGAAAGG 57.078 36.000 0.00 0.00 0.00 3.11
3179 5231 0.721718 GCGACATCTTAACAAGCGCT 59.278 50.000 2.64 2.64 39.84 5.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.