Multiple sequence alignment - TraesCS6D01G362800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G362800 chr6D 100.000 4395 0 0 1 4395 453185640 453190034 0.000000e+00 8117.0
1 TraesCS6D01G362800 chr6D 84.363 761 76 16 2870 3622 453240630 453241355 0.000000e+00 706.0
2 TraesCS6D01G362800 chr6D 86.864 472 38 12 2286 2741 453240137 453240600 1.410000e-139 507.0
3 TraesCS6D01G362800 chr6D 79.161 787 92 38 1995 2738 453346379 453347136 3.070000e-131 479.0
4 TraesCS6D01G362800 chr6D 82.281 570 69 11 2874 3439 453347173 453347714 8.610000e-127 464.0
5 TraesCS6D01G362800 chr6D 86.508 378 30 11 840 1199 453345678 453346052 3.190000e-106 396.0
6 TraesCS6D01G362800 chr6D 85.675 363 46 6 3641 4002 453241341 453241698 1.150000e-100 377.0
7 TraesCS6D01G362800 chr6D 76.456 824 76 56 87 811 453344803 453345607 5.440000e-89 339.0
8 TraesCS6D01G362800 chr6A 91.623 1540 94 7 2863 4395 599261093 599262604 0.000000e+00 2097.0
9 TraesCS6D01G362800 chr6A 87.935 1293 74 32 1 1268 599258577 599259812 0.000000e+00 1448.0
10 TraesCS6D01G362800 chr6A 85.098 973 102 28 1840 2789 599260152 599261104 0.000000e+00 953.0
11 TraesCS6D01G362800 chr6A 88.475 590 57 4 2860 3440 599622324 599622911 0.000000e+00 702.0
12 TraesCS6D01G362800 chr6A 82.329 747 87 24 3658 4395 599623308 599624018 1.350000e-169 606.0
13 TraesCS6D01G362800 chr6A 84.906 583 65 13 2862 3439 599716707 599717271 6.380000e-158 568.0
14 TraesCS6D01G362800 chr6A 85.439 467 42 12 2285 2733 599716223 599716681 3.100000e-126 462.0
15 TraesCS6D01G362800 chr6A 90.801 337 27 3 2454 2790 599622007 599622339 8.670000e-122 448.0
16 TraesCS6D01G362800 chr6A 86.413 368 38 6 840 1197 599715271 599715636 4.120000e-105 392.0
17 TraesCS6D01G362800 chr6A 76.289 776 68 59 77 757 599714381 599715135 1.540000e-79 307.0
18 TraesCS6D01G362800 chr6A 86.628 172 23 0 3225 3396 599215473 599215644 1.610000e-44 191.0
19 TraesCS6D01G362800 chr6A 98.077 104 2 0 1288 1391 9654643 9654746 9.710000e-42 182.0
20 TraesCS6D01G362800 chr6A 77.606 259 53 3 2863 3120 599215221 599215475 7.610000e-33 152.0
21 TraesCS6D01G362800 chr6A 93.878 49 3 0 752 800 599715148 599715196 1.700000e-09 75.0
22 TraesCS6D01G362800 chr6B 88.785 1284 75 30 1 1271 688759382 688758155 0.000000e+00 1509.0
23 TraesCS6D01G362800 chr6B 81.604 1272 140 50 1537 2763 688758076 688756854 0.000000e+00 966.0
24 TraesCS6D01G362800 chr6B 89.218 742 74 3 3656 4395 688755953 688755216 0.000000e+00 922.0
25 TraesCS6D01G362800 chr6B 87.755 784 62 11 2863 3645 688756745 688755995 0.000000e+00 885.0
26 TraesCS6D01G362800 chr6B 84.670 561 72 10 2883 3439 688606208 688605658 8.310000e-152 547.0
27 TraesCS6D01G362800 chr6B 87.583 451 33 8 2296 2733 688606700 688606260 6.560000e-138 501.0
28 TraesCS6D01G362800 chr6B 85.535 477 41 15 2285 2741 688665271 688664803 1.430000e-129 473.0
29 TraesCS6D01G362800 chr6B 77.716 902 77 66 392 1192 688608259 688607381 5.220000e-119 438.0
30 TraesCS6D01G362800 chr6B 83.573 347 37 10 872 1199 688666425 688666080 1.540000e-79 307.0
31 TraesCS6D01G362800 chr6B 85.567 194 14 10 77 257 688667092 688666900 1.610000e-44 191.0
32 TraesCS6D01G362800 chr6B 98.095 105 1 1 1392 1496 450074790 450074687 9.710000e-42 182.0
33 TraesCS6D01G362800 chr6B 90.698 43 3 1 1497 1539 64858865 64858906 6.140000e-04 56.5
34 TraesCS6D01G362800 chr6B 96.970 33 1 0 1496 1528 182335997 182336029 6.140000e-04 56.5
35 TraesCS6D01G362800 chr5A 98.095 105 2 0 1392 1496 559028323 559028427 2.700000e-42 183.0
36 TraesCS6D01G362800 chr3A 98.095 105 2 0 1392 1496 593310148 593310044 2.700000e-42 183.0
37 TraesCS6D01G362800 chr3A 92.157 51 3 1 1737 1787 556455150 556455101 2.190000e-08 71.3
38 TraesCS6D01G362800 chr2B 98.095 105 2 0 1392 1496 683731068 683730964 2.700000e-42 183.0
39 TraesCS6D01G362800 chrUn 98.077 104 2 0 1288 1391 182447843 182447946 9.710000e-42 182.0
40 TraesCS6D01G362800 chrUn 98.077 104 2 0 1288 1391 396571669 396571772 9.710000e-42 182.0
41 TraesCS6D01G362800 chrUn 98.077 104 2 0 1288 1391 396599018 396598915 9.710000e-42 182.0
42 TraesCS6D01G362800 chrUn 93.388 121 5 3 1288 1406 418631137 418631018 4.520000e-40 176.0
43 TraesCS6D01G362800 chrUn 86.792 53 5 2 1734 1785 154581967 154582018 1.710000e-04 58.4
44 TraesCS6D01G362800 chr7D 98.095 105 1 1 1392 1496 231602841 231602738 9.710000e-42 182.0
45 TraesCS6D01G362800 chr7D 78.000 250 29 14 2462 2710 438368653 438368877 2.760000e-27 134.0
46 TraesCS6D01G362800 chr7D 87.179 117 14 1 2465 2581 382256065 382256180 9.920000e-27 132.0
47 TraesCS6D01G362800 chr7D 88.350 103 12 0 2465 2567 215096285 215096183 1.660000e-24 124.0
48 TraesCS6D01G362800 chr7D 78.723 141 18 11 1751 1882 56997077 56996940 2.820000e-12 84.2
49 TraesCS6D01G362800 chr7D 100.000 33 0 0 1496 1528 88900434 88900466 1.320000e-05 62.1
50 TraesCS6D01G362800 chr7A 98.095 105 1 1 1392 1496 537837789 537837892 9.710000e-42 182.0
51 TraesCS6D01G362800 chr7A 78.400 250 28 14 2462 2710 489163238 489163462 5.930000e-29 139.0
52 TraesCS6D01G362800 chr5D 98.095 105 1 1 1392 1496 6249650 6249753 9.710000e-42 182.0
53 TraesCS6D01G362800 chr5D 98.095 105 1 1 1392 1496 503343067 503342964 9.710000e-42 182.0
54 TraesCS6D01G362800 chr5D 98.095 105 1 1 1392 1496 512404163 512404060 9.710000e-42 182.0
55 TraesCS6D01G362800 chr5D 98.077 104 2 0 1288 1391 562926515 562926412 9.710000e-42 182.0
56 TraesCS6D01G362800 chr4D 98.077 104 2 0 1288 1391 123640194 123640091 9.710000e-42 182.0
57 TraesCS6D01G362800 chr4D 78.992 119 23 2 2446 2563 305141322 305141439 3.640000e-11 80.5
58 TraesCS6D01G362800 chr4D 96.970 33 1 0 1496 1528 428390109 428390141 6.140000e-04 56.5
59 TraesCS6D01G362800 chr1A 98.077 104 2 0 1288 1391 94764266 94764369 9.710000e-42 182.0
60 TraesCS6D01G362800 chr1A 81.905 105 13 5 2465 2566 343675135 343675236 2.820000e-12 84.2
61 TraesCS6D01G362800 chr7B 93.333 120 5 3 1288 1405 139592291 139592409 1.620000e-39 174.0
62 TraesCS6D01G362800 chr7B 88.073 109 13 0 2465 2573 376431587 376431695 3.570000e-26 130.0
63 TraesCS6D01G362800 chr7B 77.328 247 30 14 2465 2710 455272015 455271794 5.970000e-24 122.0
64 TraesCS6D01G362800 chr7B 96.970 33 1 0 1496 1528 450586480 450586512 6.140000e-04 56.5
65 TraesCS6D01G362800 chr2A 79.412 272 32 13 2438 2709 625957781 625958028 2.100000e-38 171.0
66 TraesCS6D01G362800 chr3B 85.567 97 5 7 1742 1830 158239913 158240008 4.680000e-15 93.5
67 TraesCS6D01G362800 chr4A 84.270 89 14 0 2622 2710 691151061 691151149 2.180000e-13 87.9
68 TraesCS6D01G362800 chr4A 81.818 88 16 0 2622 2709 691469683 691469596 1.700000e-09 75.0
69 TraesCS6D01G362800 chr4B 79.412 102 21 0 2462 2563 381374119 381374220 6.100000e-09 73.1
70 TraesCS6D01G362800 chr1D 100.000 33 0 0 1496 1528 471286109 471286077 1.320000e-05 62.1
71 TraesCS6D01G362800 chr1D 96.970 33 1 0 1496 1528 104427181 104427213 6.140000e-04 56.5
72 TraesCS6D01G362800 chr5B 96.970 33 1 0 1496 1528 696588026 696588058 6.140000e-04 56.5
73 TraesCS6D01G362800 chr1B 96.970 33 1 0 1496 1528 611132952 611132984 6.140000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G362800 chr6D 453185640 453190034 4394 False 8117.000000 8117 100.000000 1 4395 1 chr6D.!!$F1 4394
1 TraesCS6D01G362800 chr6D 453240137 453241698 1561 False 530.000000 706 85.634000 2286 4002 3 chr6D.!!$F2 1716
2 TraesCS6D01G362800 chr6D 453344803 453347714 2911 False 419.500000 479 81.101500 87 3439 4 chr6D.!!$F3 3352
3 TraesCS6D01G362800 chr6A 599258577 599262604 4027 False 1499.333333 2097 88.218667 1 4395 3 chr6A.!!$F3 4394
4 TraesCS6D01G362800 chr6A 599622007 599624018 2011 False 585.333333 702 87.201667 2454 4395 3 chr6A.!!$F4 1941
5 TraesCS6D01G362800 chr6A 599714381 599717271 2890 False 360.800000 568 85.385000 77 3439 5 chr6A.!!$F5 3362
6 TraesCS6D01G362800 chr6B 688755216 688759382 4166 True 1070.500000 1509 86.840500 1 4395 4 chr6B.!!$R4 4394
7 TraesCS6D01G362800 chr6B 688605658 688608259 2601 True 495.333333 547 83.323000 392 3439 3 chr6B.!!$R2 3047
8 TraesCS6D01G362800 chr6B 688664803 688667092 2289 True 323.666667 473 84.891667 77 2741 3 chr6B.!!$R3 2664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
306 400 0.043334 CCCTCTTCTCCCTTCCTCCA 59.957 60.0 0.0 0.0 0.00 3.86 F
1726 2009 0.178929 AGTTCTCCCTCCGTCCAGTT 60.179 55.0 0.0 0.0 0.00 3.16 F
2370 3038 0.094046 CGTAACATCCCGTTTGCGTC 59.906 55.0 0.0 0.0 39.14 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2159 2722 0.040499 GGGGGTGGAAAATGCTGGTA 59.960 55.0 0.0 0.0 0.0 3.25 R
2794 3577 0.175989 GGTGAGAGCCCGGTTAGAAG 59.824 60.0 0.0 0.0 0.0 2.85 R
3491 4288 0.970937 CACCTTGTCTAGCTCCCCGA 60.971 60.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.755461 GTTAATCCTCTGTACGATCACATG 57.245 41.667 0.00 0.00 0.00 3.21
58 61 5.275067 AGCAAAATTAACAAGCCAGACAA 57.725 34.783 0.00 0.00 0.00 3.18
62 65 6.699642 GCAAAATTAACAAGCCAGACAAGTAA 59.300 34.615 0.00 0.00 0.00 2.24
74 81 5.591099 CCAGACAAGTAAGCACACAAAAAT 58.409 37.500 0.00 0.00 0.00 1.82
75 82 6.042143 CCAGACAAGTAAGCACACAAAAATT 58.958 36.000 0.00 0.00 0.00 1.82
85 92 4.518211 AGCACACAAAAATTGAGAGGAGAG 59.482 41.667 0.00 0.00 0.00 3.20
87 94 5.334724 GCACACAAAAATTGAGAGGAGAGAG 60.335 44.000 0.00 0.00 0.00 3.20
91 98 6.933521 CACAAAAATTGAGAGGAGAGAGAGAA 59.066 38.462 0.00 0.00 0.00 2.87
109 116 6.614906 AGAGAGAAAGAGAGAGAGAGAGAGAT 59.385 42.308 0.00 0.00 0.00 2.75
126 133 6.955364 AGAGAGATAGAGAGAGAGATGATGG 58.045 44.000 0.00 0.00 0.00 3.51
145 180 5.754890 TGATGGTGATGATGTAACGATGAAG 59.245 40.000 0.00 0.00 0.00 3.02
162 199 5.795939 CGATGAAGAACGCTACCTATATGTC 59.204 44.000 0.00 0.00 0.00 3.06
257 327 1.302511 GCGAACATCACTGTGGGGT 60.303 57.895 8.11 3.78 35.22 4.95
306 400 0.043334 CCCTCTTCTCCCTTCCTCCA 59.957 60.000 0.00 0.00 0.00 3.86
369 464 2.677573 ATCGTCGCGCCGATTGATCA 62.678 55.000 20.39 0.00 44.72 2.92
402 520 1.406065 CGAGCATGTCCTCTCCCCAT 61.406 60.000 0.00 0.00 0.00 4.00
419 538 0.818296 CATCTCCTCCGTCTCCGTTT 59.182 55.000 0.00 0.00 0.00 3.60
583 721 0.250814 CCGGTCGAGCTAGAGGGTAT 60.251 60.000 13.48 0.00 0.00 2.73
602 740 4.163649 GGTATACAGGCCTTTGTAGGAGTT 59.836 45.833 0.00 0.00 45.05 3.01
604 742 1.168714 CAGGCCTTTGTAGGAGTTGC 58.831 55.000 0.00 0.00 45.05 4.17
650 790 0.614979 TGCTCCCCTACGCTTCTTCT 60.615 55.000 0.00 0.00 0.00 2.85
665 805 4.383118 GCTTCTTCTTCCTGGCTACATACA 60.383 45.833 0.00 0.00 0.00 2.29
859 1084 0.729116 CTAGCTCAATTGGTGCCGTG 59.271 55.000 16.72 7.27 36.68 4.94
909 1148 6.959366 TCATCCATATCTATCCATACACACCA 59.041 38.462 0.00 0.00 0.00 4.17
1135 1390 3.399181 GAGCCACCGGGACCATGA 61.399 66.667 6.32 0.00 35.59 3.07
1187 1442 0.957888 GAGCTGCCAGGTCAGTTTCC 60.958 60.000 18.56 0.00 42.03 3.13
1196 1451 5.128827 TGCCAGGTCAGTTTCCTACTATTAG 59.871 44.000 0.00 0.00 34.56 1.73
1198 1453 6.351966 GCCAGGTCAGTTTCCTACTATTAGTT 60.352 42.308 0.85 0.00 34.56 2.24
1224 1483 1.843206 AGATCAAAAGGCTCCTCTCCC 59.157 52.381 0.00 0.00 0.00 4.30
1229 1488 0.912006 AAAGGCTCCTCTCCCCTGTC 60.912 60.000 0.00 0.00 0.00 3.51
1231 1490 2.366570 GCTCCTCTCCCCTGTCCT 59.633 66.667 0.00 0.00 0.00 3.85
1249 1512 8.487028 CCCTGTCCTATTCACTTTTCTTACTAT 58.513 37.037 0.00 0.00 0.00 2.12
1282 1545 7.901029 ACCAAAGTTAGTTAGTTACTACTCCC 58.099 38.462 0.00 0.00 39.05 4.30
1284 1547 8.249638 CCAAAGTTAGTTAGTTACTACTCCCTC 58.750 40.741 0.00 0.00 39.05 4.30
1286 1549 6.118852 AGTTAGTTAGTTACTACTCCCTCCG 58.881 44.000 0.00 0.00 39.05 4.63
1287 1550 3.286353 AGTTAGTTACTACTCCCTCCGC 58.714 50.000 0.00 0.00 34.56 5.54
1291 1554 1.381928 TTACTACTCCCTCCGCAGCG 61.382 60.000 8.18 8.18 0.00 5.18
1292 1555 2.547640 TACTACTCCCTCCGCAGCGT 62.548 60.000 15.05 0.00 0.00 5.07
1293 1556 1.822613 CTACTCCCTCCGCAGCGTA 60.823 63.158 15.05 0.00 0.00 4.42
1296 1559 2.441348 TCCCTCCGCAGCGTATCA 60.441 61.111 15.05 0.00 0.00 2.15
1298 1561 2.659897 CCTCCGCAGCGTATCAGC 60.660 66.667 15.05 0.00 37.41 4.26
1303 1566 3.780693 GCAGCGTATCAGCGACAA 58.219 55.556 0.00 0.00 43.00 3.18
1311 1574 3.050619 CGTATCAGCGACAACCCTATTC 58.949 50.000 0.00 0.00 0.00 1.75
1314 1577 3.695830 TCAGCGACAACCCTATTCTTT 57.304 42.857 0.00 0.00 0.00 2.52
1319 1582 4.695928 AGCGACAACCCTATTCTTTCTTTC 59.304 41.667 0.00 0.00 0.00 2.62
1321 1584 5.246307 CGACAACCCTATTCTTTCTTTCCT 58.754 41.667 0.00 0.00 0.00 3.36
1322 1585 5.705905 CGACAACCCTATTCTTTCTTTCCTT 59.294 40.000 0.00 0.00 0.00 3.36
1323 1586 6.128254 CGACAACCCTATTCTTTCTTTCCTTC 60.128 42.308 0.00 0.00 0.00 3.46
1324 1587 6.010850 ACAACCCTATTCTTTCTTTCCTTCC 58.989 40.000 0.00 0.00 0.00 3.46
1325 1588 6.183361 ACAACCCTATTCTTTCTTTCCTTCCT 60.183 38.462 0.00 0.00 0.00 3.36
1330 1593 7.178573 CCTATTCTTTCTTTCCTTCCTTCCTT 58.821 38.462 0.00 0.00 0.00 3.36
1331 1594 8.329502 CCTATTCTTTCTTTCCTTCCTTCCTTA 58.670 37.037 0.00 0.00 0.00 2.69
1394 1657 9.566432 AAAGTAGTTTGAAGTTCTCTCATGATT 57.434 29.630 4.17 0.00 0.00 2.57
1395 1658 9.566432 AAGTAGTTTGAAGTTCTCTCATGATTT 57.434 29.630 4.17 0.00 0.00 2.17
1396 1659 9.566432 AGTAGTTTGAAGTTCTCTCATGATTTT 57.434 29.630 4.17 0.00 0.00 1.82
1420 1683 9.952030 TTTTTGATTTCCTAAAAGAGTTTTGGT 57.048 25.926 0.00 0.00 39.70 3.67
1421 1684 9.594478 TTTTGATTTCCTAAAAGAGTTTTGGTC 57.406 29.630 0.00 0.00 39.70 4.02
1422 1685 8.533569 TTGATTTCCTAAAAGAGTTTTGGTCT 57.466 30.769 0.00 0.00 39.70 3.85
1423 1686 9.635404 TTGATTTCCTAAAAGAGTTTTGGTCTA 57.365 29.630 0.00 0.00 39.70 2.59
1424 1687 9.635404 TGATTTCCTAAAAGAGTTTTGGTCTAA 57.365 29.630 0.00 0.00 39.70 2.10
1425 1688 9.894783 GATTTCCTAAAAGAGTTTTGGTCTAAC 57.105 33.333 0.00 0.00 39.70 2.34
1426 1689 8.810990 TTTCCTAAAAGAGTTTTGGTCTAACA 57.189 30.769 0.00 0.00 39.70 2.41
1427 1690 8.446599 TTCCTAAAAGAGTTTTGGTCTAACAG 57.553 34.615 0.00 0.00 39.70 3.16
1428 1691 7.571025 TCCTAAAAGAGTTTTGGTCTAACAGT 58.429 34.615 0.00 0.00 39.70 3.55
1429 1692 8.050930 TCCTAAAAGAGTTTTGGTCTAACAGTT 58.949 33.333 0.00 0.00 39.70 3.16
1430 1693 8.683615 CCTAAAAGAGTTTTGGTCTAACAGTTT 58.316 33.333 0.00 0.00 35.58 2.66
1487 1750 9.827411 AAGACTAAAATATGAAAGAAAAGCGTC 57.173 29.630 0.00 0.00 0.00 5.19
1488 1751 8.451748 AGACTAAAATATGAAAGAAAAGCGTCC 58.548 33.333 0.00 0.00 0.00 4.79
1489 1752 8.106247 ACTAAAATATGAAAGAAAAGCGTCCA 57.894 30.769 0.00 0.00 0.00 4.02
1490 1753 8.739972 ACTAAAATATGAAAGAAAAGCGTCCAT 58.260 29.630 0.00 0.00 0.00 3.41
1491 1754 9.573133 CTAAAATATGAAAGAAAAGCGTCCATT 57.427 29.630 0.00 0.00 0.00 3.16
1492 1755 7.816945 AAATATGAAAGAAAAGCGTCCATTG 57.183 32.000 0.00 0.00 0.00 2.82
1493 1756 4.853924 ATGAAAGAAAAGCGTCCATTGT 57.146 36.364 0.00 0.00 0.00 2.71
1494 1757 4.223320 TGAAAGAAAAGCGTCCATTGTC 57.777 40.909 0.00 0.00 0.00 3.18
1495 1758 3.882888 TGAAAGAAAAGCGTCCATTGTCT 59.117 39.130 0.00 0.00 0.00 3.41
1496 1759 4.024048 TGAAAGAAAAGCGTCCATTGTCTC 60.024 41.667 0.00 0.00 0.00 3.36
1497 1760 2.427506 AGAAAAGCGTCCATTGTCTCC 58.572 47.619 0.00 0.00 0.00 3.71
1498 1761 1.468914 GAAAAGCGTCCATTGTCTCCC 59.531 52.381 0.00 0.00 0.00 4.30
1499 1762 0.400213 AAAGCGTCCATTGTCTCCCA 59.600 50.000 0.00 0.00 0.00 4.37
1500 1763 0.620556 AAGCGTCCATTGTCTCCCAT 59.379 50.000 0.00 0.00 0.00 4.00
1501 1764 1.496060 AGCGTCCATTGTCTCCCATA 58.504 50.000 0.00 0.00 0.00 2.74
1502 1765 1.837439 AGCGTCCATTGTCTCCCATAA 59.163 47.619 0.00 0.00 0.00 1.90
1503 1766 2.439507 AGCGTCCATTGTCTCCCATAAT 59.560 45.455 0.00 0.00 0.00 1.28
1504 1767 2.549754 GCGTCCATTGTCTCCCATAATG 59.450 50.000 0.00 0.00 34.20 1.90
1505 1768 3.808728 CGTCCATTGTCTCCCATAATGT 58.191 45.455 0.00 0.00 32.88 2.71
1506 1769 4.742440 GCGTCCATTGTCTCCCATAATGTA 60.742 45.833 0.00 0.00 32.88 2.29
1507 1770 5.364778 CGTCCATTGTCTCCCATAATGTAA 58.635 41.667 0.00 0.00 32.88 2.41
1508 1771 5.466728 CGTCCATTGTCTCCCATAATGTAAG 59.533 44.000 0.00 0.00 32.88 2.34
1509 1772 6.591935 GTCCATTGTCTCCCATAATGTAAGA 58.408 40.000 0.00 0.00 32.88 2.10
1510 1773 6.483640 GTCCATTGTCTCCCATAATGTAAGAC 59.516 42.308 0.00 0.00 37.47 3.01
1511 1774 5.466728 CCATTGTCTCCCATAATGTAAGACG 59.533 44.000 0.00 0.00 39.33 4.18
1512 1775 5.670792 TTGTCTCCCATAATGTAAGACGT 57.329 39.130 0.00 0.00 39.33 4.34
1513 1776 5.670792 TGTCTCCCATAATGTAAGACGTT 57.329 39.130 0.00 0.00 39.33 3.99
1514 1777 6.045072 TGTCTCCCATAATGTAAGACGTTT 57.955 37.500 0.00 0.00 39.33 3.60
1515 1778 6.469410 TGTCTCCCATAATGTAAGACGTTTT 58.531 36.000 0.00 0.00 39.33 2.43
1516 1779 6.938030 TGTCTCCCATAATGTAAGACGTTTTT 59.062 34.615 0.00 0.00 39.33 1.94
1530 1793 3.926003 TTTTTGGCACTGCACGGA 58.074 50.000 2.82 0.00 0.00 4.69
1531 1794 1.732917 TTTTTGGCACTGCACGGAG 59.267 52.632 2.82 0.00 0.00 4.63
1532 1795 1.733402 TTTTTGGCACTGCACGGAGG 61.733 55.000 2.82 0.00 0.00 4.30
1533 1796 4.641645 TTGGCACTGCACGGAGGG 62.642 66.667 2.82 0.00 0.00 4.30
1535 1798 4.767255 GGCACTGCACGGAGGGAG 62.767 72.222 2.82 0.00 0.00 4.30
1576 1853 3.046390 CGATCTTGATCGAGTAGGTTGC 58.954 50.000 23.64 0.00 46.12 4.17
1583 1860 2.502142 TCGAGTAGGTTGCTAGTCCA 57.498 50.000 0.00 0.00 0.00 4.02
1591 1870 3.571590 AGGTTGCTAGTCCATCTCTAGG 58.428 50.000 0.00 0.00 36.40 3.02
1606 1885 6.321181 CCATCTCTAGGAAGCTACATATCTCC 59.679 46.154 0.00 0.00 0.00 3.71
1609 1888 6.736179 TCTCTAGGAAGCTACATATCTCCCTA 59.264 42.308 0.00 0.00 0.00 3.53
1610 1889 7.239984 TCTCTAGGAAGCTACATATCTCCCTAA 59.760 40.741 0.00 0.00 0.00 2.69
1611 1890 7.176490 TCTAGGAAGCTACATATCTCCCTAAC 58.824 42.308 0.00 0.00 0.00 2.34
1612 1891 4.767928 AGGAAGCTACATATCTCCCTAACG 59.232 45.833 0.00 0.00 0.00 3.18
1674 1953 1.056869 GCAACCGTGTTTTATTGGCG 58.943 50.000 0.00 0.00 0.00 5.69
1682 1961 4.407818 CGTGTTTTATTGGCGCTAATTCA 58.592 39.130 24.47 14.77 0.00 2.57
1710 1993 9.686683 ACTTGTCCTTGCTATTATTGATTAGTT 57.313 29.630 0.00 0.00 0.00 2.24
1715 1998 8.157476 TCCTTGCTATTATTGATTAGTTCTCCC 58.843 37.037 0.00 0.00 0.00 4.30
1716 1999 8.160106 CCTTGCTATTATTGATTAGTTCTCCCT 58.840 37.037 0.00 0.00 0.00 4.20
1717 2000 9.213799 CTTGCTATTATTGATTAGTTCTCCCTC 57.786 37.037 0.00 0.00 0.00 4.30
1718 2001 7.680730 TGCTATTATTGATTAGTTCTCCCTCC 58.319 38.462 0.00 0.00 0.00 4.30
1719 2002 6.814146 GCTATTATTGATTAGTTCTCCCTCCG 59.186 42.308 0.00 0.00 0.00 4.63
1720 2003 6.749036 ATTATTGATTAGTTCTCCCTCCGT 57.251 37.500 0.00 0.00 0.00 4.69
1721 2004 4.674281 ATTGATTAGTTCTCCCTCCGTC 57.326 45.455 0.00 0.00 0.00 4.79
1722 2005 2.385803 TGATTAGTTCTCCCTCCGTCC 58.614 52.381 0.00 0.00 0.00 4.79
1726 2009 0.178929 AGTTCTCCCTCCGTCCAGTT 60.179 55.000 0.00 0.00 0.00 3.16
1728 2011 1.897802 GTTCTCCCTCCGTCCAGTTTA 59.102 52.381 0.00 0.00 0.00 2.01
1729 2012 2.500504 GTTCTCCCTCCGTCCAGTTTAT 59.499 50.000 0.00 0.00 0.00 1.40
1730 2013 2.108168 TCTCCCTCCGTCCAGTTTATG 58.892 52.381 0.00 0.00 0.00 1.90
1749 2049 6.613153 TTATGGGGTTCCTTTGTATTTTGG 57.387 37.500 0.00 0.00 0.00 3.28
1836 2140 8.166422 AGATTTGTATTGAAACGAGGTTTTCT 57.834 30.769 0.00 0.00 35.77 2.52
1837 2141 8.076178 AGATTTGTATTGAAACGAGGTTTTCTG 58.924 33.333 0.00 0.00 35.77 3.02
1840 2144 7.972832 TGTATTGAAACGAGGTTTTCTGTAT 57.027 32.000 0.00 0.00 35.77 2.29
1841 2145 9.491675 TTGTATTGAAACGAGGTTTTCTGTATA 57.508 29.630 0.00 0.00 35.77 1.47
1842 2146 9.661563 TGTATTGAAACGAGGTTTTCTGTATAT 57.338 29.630 0.00 0.00 35.77 0.86
1910 2217 8.017418 TGGACAAACTTCAATCCAAAATAAGT 57.983 30.769 0.00 0.00 38.30 2.24
1911 2218 8.482128 TGGACAAACTTCAATCCAAAATAAGTT 58.518 29.630 0.00 0.00 40.98 2.66
1916 2223 6.691508 ACTTCAATCCAAAATAAGTTGAGGC 58.308 36.000 0.00 0.00 31.49 4.70
1925 2232 8.745590 TCCAAAATAAGTTGAGGCCTAATAAAC 58.254 33.333 4.42 8.65 0.00 2.01
1926 2233 7.979537 CCAAAATAAGTTGAGGCCTAATAAACC 59.020 37.037 4.42 0.00 0.00 3.27
1928 2235 4.948062 AAGTTGAGGCCTAATAAACCCT 57.052 40.909 4.42 0.00 0.00 4.34
1975 2282 6.000891 TCATCAACTTGTCATACTGTTTGC 57.999 37.500 0.00 0.00 0.00 3.68
1976 2283 5.530543 TCATCAACTTGTCATACTGTTTGCA 59.469 36.000 0.00 0.00 0.00 4.08
1996 2353 9.203421 GTTTGCACACTATATACATGCATACTA 57.797 33.333 16.33 0.00 45.13 1.82
1999 2356 8.028938 TGCACACTATATACATGCATACTACAG 58.971 37.037 0.00 0.00 41.18 2.74
2003 2360 8.739972 CACTATATACATGCATACTACAGGTGA 58.260 37.037 0.00 0.00 33.51 4.02
2077 2444 4.024556 CCGCAAGCATGAACTTCCTATAAG 60.025 45.833 0.00 0.00 0.00 1.73
2093 2460 9.959749 CTTCCTATAAGTAATCTGTCAAGTCTC 57.040 37.037 0.00 0.00 0.00 3.36
2094 2461 9.475620 TTCCTATAAGTAATCTGTCAAGTCTCA 57.524 33.333 0.00 0.00 0.00 3.27
2095 2462 9.475620 TCCTATAAGTAATCTGTCAAGTCTCAA 57.524 33.333 0.00 0.00 0.00 3.02
2096 2463 9.743057 CCTATAAGTAATCTGTCAAGTCTCAAG 57.257 37.037 0.00 0.00 0.00 3.02
2164 2727 2.787601 GCATGTGGCATTCATACCAG 57.212 50.000 0.00 0.00 43.97 4.00
2165 2728 1.269413 GCATGTGGCATTCATACCAGC 60.269 52.381 0.00 0.00 43.97 4.85
2166 2729 2.025898 CATGTGGCATTCATACCAGCA 58.974 47.619 0.00 0.00 36.38 4.41
2167 2730 2.440517 TGTGGCATTCATACCAGCAT 57.559 45.000 0.00 0.00 36.38 3.79
2189 2754 1.538876 CCACCCCCTCACTCCTTGA 60.539 63.158 0.00 0.00 0.00 3.02
2215 2853 4.911514 TTTGCCTACTTCAACCAAGAAC 57.088 40.909 0.00 0.00 35.82 3.01
2217 2858 4.164843 TGCCTACTTCAACCAAGAACTT 57.835 40.909 0.00 0.00 35.82 2.66
2305 2964 8.912988 CATATATACTTTCTTTTGCCCCTCAAA 58.087 33.333 0.00 0.00 42.50 2.69
2353 3020 9.909644 GTACAACCTGATATGATCTAATTACGT 57.090 33.333 0.00 0.00 0.00 3.57
2370 3038 0.094046 CGTAACATCCCGTTTGCGTC 59.906 55.000 0.00 0.00 39.14 5.19
2392 3078 3.032017 ACACTTTCGACATCCACTGAG 57.968 47.619 0.00 0.00 0.00 3.35
2411 3097 6.003950 ACTGAGGCTTCTGTTGCTAATTTTA 58.996 36.000 2.34 0.00 32.25 1.52
2412 3098 6.660949 ACTGAGGCTTCTGTTGCTAATTTTAT 59.339 34.615 2.34 0.00 32.25 1.40
2415 3101 6.624423 AGGCTTCTGTTGCTAATTTTATGTG 58.376 36.000 0.00 0.00 0.00 3.21
2425 3111 5.163530 TGCTAATTTTATGTGTGGCTCCATG 60.164 40.000 0.00 0.00 0.00 3.66
2430 3119 1.672854 ATGTGTGGCTCCATGCATGC 61.673 55.000 21.69 11.82 45.15 4.06
2592 3281 2.345760 TAGCCCAAGGTCGTCGTCC 61.346 63.158 0.00 0.00 0.00 4.79
2593 3282 2.776370 TAGCCCAAGGTCGTCGTCCT 62.776 60.000 5.11 5.11 36.81 3.85
2594 3283 2.572284 CCCAAGGTCGTCGTCCTC 59.428 66.667 11.53 0.00 33.76 3.71
2599 3288 0.611062 AAGGTCGTCGTCCTCATCCA 60.611 55.000 11.53 0.00 33.76 3.41
2655 3344 2.408022 CTCGTCTTCTACCGCGGG 59.592 66.667 31.76 13.23 0.00 6.13
2749 3438 0.827368 GGTGGGTTCAAAGTGCCAAA 59.173 50.000 0.00 0.00 0.00 3.28
2765 3548 6.624423 AGTGCCAAACTCTTGCAATATAAAG 58.376 36.000 0.00 0.00 31.64 1.85
2766 3549 6.209391 AGTGCCAAACTCTTGCAATATAAAGT 59.791 34.615 0.00 0.00 31.64 2.66
2806 3589 9.079833 GTTTTTAATTATTTCTTCTAACCGGGC 57.920 33.333 6.32 0.00 0.00 6.13
2807 3590 8.584063 TTTTAATTATTTCTTCTAACCGGGCT 57.416 30.769 6.32 0.00 0.00 5.19
2808 3591 7.797038 TTAATTATTTCTTCTAACCGGGCTC 57.203 36.000 6.32 0.00 0.00 4.70
2809 3592 5.632034 ATTATTTCTTCTAACCGGGCTCT 57.368 39.130 6.32 0.00 0.00 4.09
2810 3593 3.545366 ATTTCTTCTAACCGGGCTCTC 57.455 47.619 6.32 0.00 0.00 3.20
2811 3594 1.933021 TTCTTCTAACCGGGCTCTCA 58.067 50.000 6.32 0.00 0.00 3.27
2812 3595 1.183549 TCTTCTAACCGGGCTCTCAC 58.816 55.000 6.32 0.00 0.00 3.51
2813 3596 0.175989 CTTCTAACCGGGCTCTCACC 59.824 60.000 6.32 0.00 0.00 4.02
2820 3603 4.432741 GGGCTCTCACCCCTTGCC 62.433 72.222 0.00 0.00 45.00 4.52
2821 3604 3.650950 GGCTCTCACCCCTTGCCA 61.651 66.667 0.00 0.00 42.79 4.92
2822 3605 2.679716 GCTCTCACCCCTTGCCAT 59.320 61.111 0.00 0.00 0.00 4.40
2823 3606 1.000396 GCTCTCACCCCTTGCCATT 60.000 57.895 0.00 0.00 0.00 3.16
2824 3607 0.255890 GCTCTCACCCCTTGCCATTA 59.744 55.000 0.00 0.00 0.00 1.90
2825 3608 1.340991 GCTCTCACCCCTTGCCATTAA 60.341 52.381 0.00 0.00 0.00 1.40
2826 3609 2.687914 GCTCTCACCCCTTGCCATTAAT 60.688 50.000 0.00 0.00 0.00 1.40
2827 3610 3.217626 CTCTCACCCCTTGCCATTAATC 58.782 50.000 0.00 0.00 0.00 1.75
2828 3611 2.580322 TCTCACCCCTTGCCATTAATCA 59.420 45.455 0.00 0.00 0.00 2.57
2829 3612 2.689983 CTCACCCCTTGCCATTAATCAC 59.310 50.000 0.00 0.00 0.00 3.06
2830 3613 2.311542 TCACCCCTTGCCATTAATCACT 59.688 45.455 0.00 0.00 0.00 3.41
2831 3614 3.099141 CACCCCTTGCCATTAATCACTT 58.901 45.455 0.00 0.00 0.00 3.16
2832 3615 4.017958 TCACCCCTTGCCATTAATCACTTA 60.018 41.667 0.00 0.00 0.00 2.24
2833 3616 4.709397 CACCCCTTGCCATTAATCACTTAA 59.291 41.667 0.00 0.00 0.00 1.85
2834 3617 5.186797 CACCCCTTGCCATTAATCACTTAAA 59.813 40.000 0.00 0.00 30.88 1.52
2835 3618 5.186992 ACCCCTTGCCATTAATCACTTAAAC 59.813 40.000 0.00 0.00 30.88 2.01
2836 3619 5.186797 CCCCTTGCCATTAATCACTTAAACA 59.813 40.000 0.00 0.00 30.88 2.83
2837 3620 6.332630 CCCTTGCCATTAATCACTTAAACAG 58.667 40.000 0.00 0.00 30.88 3.16
2838 3621 6.152661 CCCTTGCCATTAATCACTTAAACAGA 59.847 38.462 0.00 0.00 30.88 3.41
2839 3622 7.309744 CCCTTGCCATTAATCACTTAAACAGAA 60.310 37.037 0.00 0.00 30.88 3.02
2840 3623 8.087750 CCTTGCCATTAATCACTTAAACAGAAA 58.912 33.333 0.00 0.00 30.88 2.52
2841 3624 9.643693 CTTGCCATTAATCACTTAAACAGAAAT 57.356 29.630 0.00 0.00 30.88 2.17
2858 3641 8.779354 AACAGAAATATTCAGTACAAGTCTCC 57.221 34.615 0.00 0.00 0.00 3.71
2859 3642 7.907389 ACAGAAATATTCAGTACAAGTCTCCA 58.093 34.615 0.00 0.00 0.00 3.86
2860 3643 8.543774 ACAGAAATATTCAGTACAAGTCTCCAT 58.456 33.333 0.00 0.00 0.00 3.41
2861 3644 9.388506 CAGAAATATTCAGTACAAGTCTCCATT 57.611 33.333 0.00 0.00 0.00 3.16
2951 3736 0.040958 GGTGCTGTGCAGAGTTTTCG 60.041 55.000 13.05 0.00 40.08 3.46
3273 4061 0.036022 GACTTCAGCCAGCAACTCCT 59.964 55.000 0.00 0.00 0.00 3.69
3440 4237 1.572085 GGTGCTGCATGCCGCTATAG 61.572 60.000 30.24 14.84 43.06 1.31
3508 4305 0.676736 GATCGGGGAGCTAGACAAGG 59.323 60.000 0.00 0.00 0.00 3.61
3528 4329 0.756070 TGACCACTCACCGGTACACA 60.756 55.000 6.87 0.00 36.69 3.72
3640 4449 7.965107 ACTTCATCATCTTTCTCGCAAAAATAC 59.035 33.333 0.00 0.00 0.00 1.89
3649 4458 9.749490 TCTTTCTCGCAAAAATACTTATAAACG 57.251 29.630 0.00 0.00 0.00 3.60
3652 4669 7.385650 TCTCGCAAAAATACTTATAAACGTCG 58.614 34.615 0.00 0.00 0.00 5.12
3654 4671 6.949327 TCGCAAAAATACTTATAAACGTCGTG 59.051 34.615 0.00 0.00 0.00 4.35
3741 4778 6.990341 ACTATACCCACGTTCCAAAATAAC 57.010 37.500 0.00 0.00 0.00 1.89
3779 4816 8.135529 GCTTGTCCAAAGTAGAACTTGTTTAAT 58.864 33.333 0.00 0.00 38.66 1.40
3939 4977 7.219917 TCAAAGATAAACAAGTTTGACTTTGCG 59.780 33.333 28.70 19.09 44.40 4.85
3975 5013 4.020543 TGAATTATTTTGGAACGGAGGGG 58.979 43.478 0.00 0.00 0.00 4.79
4040 5082 9.495572 AGTAATGTAGAAAGTTCTTCTTCAAGG 57.504 33.333 0.00 0.00 38.70 3.61
4068 5112 1.972660 GCGTCTACCCCATGAAGCCT 61.973 60.000 0.00 0.00 32.94 4.58
4104 5148 3.003378 CAGCCAAGATGACATATGCTGTG 59.997 47.826 12.09 0.00 38.54 3.66
4237 5281 6.206829 CCCTTAAAGTTTACAACTAGCAAGCT 59.793 38.462 0.00 0.00 41.91 3.74
4291 5335 3.429822 GGTTCGATACATGGTCGGAAGAA 60.430 47.826 18.61 6.69 45.01 2.52
4307 5351 4.209080 CGGAAGAAACCAAAACAAGCAATC 59.791 41.667 0.00 0.00 0.00 2.67
4353 5397 0.802494 GACAAAACGATGCCCACGAT 59.198 50.000 0.00 0.00 34.70 3.73
4355 5399 1.086696 CAAAACGATGCCCACGATCT 58.913 50.000 0.00 0.00 34.70 2.75
4369 5413 1.517832 GATCTGCCCAGTAGCACGT 59.482 57.895 0.00 0.00 38.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.019156 TGTTAATTTTGCTTGCAAGTAAGTGC 60.019 34.615 25.63 13.63 45.15 4.40
58 61 5.827797 TCCTCTCAATTTTTGTGTGCTTACT 59.172 36.000 0.00 0.00 0.00 2.24
62 65 4.464008 TCTCCTCTCAATTTTTGTGTGCT 58.536 39.130 0.00 0.00 0.00 4.40
74 81 5.250543 TCTCTCTTTCTCTCTCTCCTCTCAA 59.749 44.000 0.00 0.00 0.00 3.02
75 82 4.782691 TCTCTCTTTCTCTCTCTCCTCTCA 59.217 45.833 0.00 0.00 0.00 3.27
85 92 6.227298 TCTCTCTCTCTCTCTCTTTCTCTC 57.773 45.833 0.00 0.00 0.00 3.20
87 94 7.957002 TCTATCTCTCTCTCTCTCTCTTTCTC 58.043 42.308 0.00 0.00 0.00 2.87
91 98 7.301420 TCTCTCTATCTCTCTCTCTCTCTCTT 58.699 42.308 0.00 0.00 0.00 2.85
109 116 6.198237 TCATCACCATCATCTCTCTCTCTA 57.802 41.667 0.00 0.00 0.00 2.43
126 133 5.718246 CGTTCTTCATCGTTACATCATCAC 58.282 41.667 0.00 0.00 0.00 3.06
145 180 3.973135 CACACGACATATAGGTAGCGTTC 59.027 47.826 2.01 0.00 0.00 3.95
162 199 7.482654 AATTATTAGTCCATCATCACACACG 57.517 36.000 0.00 0.00 0.00 4.49
257 327 0.889186 GACCCAAGCTCGCAAGGAAA 60.889 55.000 0.00 0.00 38.47 3.13
306 400 1.553690 ATGTGGCTAGGTCGCTGGTT 61.554 55.000 0.00 0.00 0.00 3.67
419 538 3.015383 GCAGGGGCTGGGGAAATA 58.985 61.111 0.00 0.00 36.96 1.40
439 560 9.750783 AGTACTCTGTACTCTATTAACTTCCAA 57.249 33.333 4.72 0.00 0.00 3.53
524 650 3.740397 CCTGCATGTGCCGTGTGG 61.740 66.667 2.07 0.00 41.18 4.17
536 662 0.547471 TCTCCATCAACCTCCCTGCA 60.547 55.000 0.00 0.00 0.00 4.41
583 721 2.290071 GCAACTCCTACAAAGGCCTGTA 60.290 50.000 5.69 5.17 43.31 2.74
602 740 0.393267 GCCGGGGTTATACTTGTGCA 60.393 55.000 2.18 0.00 0.00 4.57
604 742 0.544697 AGGCCGGGGTTATACTTGTG 59.455 55.000 2.18 0.00 0.00 3.33
650 790 7.582719 AGGAATAATTTGTATGTAGCCAGGAA 58.417 34.615 0.00 0.00 0.00 3.36
994 1243 2.679642 CCGCAGCCCCATGGAAAA 60.680 61.111 15.22 0.00 0.00 2.29
1261 1524 6.601217 CGGAGGGAGTAGTAACTAACTAACTT 59.399 42.308 0.00 0.00 42.37 2.66
1278 1541 2.336809 GATACGCTGCGGAGGGAG 59.663 66.667 27.27 0.00 36.04 4.30
1280 1543 2.028190 CTGATACGCTGCGGAGGG 59.972 66.667 26.95 19.42 38.14 4.30
1286 1549 1.345176 GTTGTCGCTGATACGCTGC 59.655 57.895 0.00 0.00 38.02 5.25
1287 1550 1.421410 GGGTTGTCGCTGATACGCTG 61.421 60.000 0.00 0.00 0.00 5.18
1291 1554 4.323553 AGAATAGGGTTGTCGCTGATAC 57.676 45.455 0.00 0.00 37.93 2.24
1292 1555 5.128827 AGAAAGAATAGGGTTGTCGCTGATA 59.871 40.000 0.00 0.00 37.93 2.15
1293 1556 3.914426 AAGAATAGGGTTGTCGCTGAT 57.086 42.857 0.00 0.00 37.93 2.90
1296 1559 3.983044 AGAAAGAATAGGGTTGTCGCT 57.017 42.857 0.00 0.00 40.03 4.93
1298 1561 5.246307 AGGAAAGAAAGAATAGGGTTGTCG 58.754 41.667 0.00 0.00 0.00 4.35
1300 1563 6.010850 GGAAGGAAAGAAAGAATAGGGTTGT 58.989 40.000 0.00 0.00 0.00 3.32
1301 1564 6.249192 AGGAAGGAAAGAAAGAATAGGGTTG 58.751 40.000 0.00 0.00 0.00 3.77
1302 1565 6.470456 AGGAAGGAAAGAAAGAATAGGGTT 57.530 37.500 0.00 0.00 0.00 4.11
1303 1566 6.470456 AAGGAAGGAAAGAAAGAATAGGGT 57.530 37.500 0.00 0.00 0.00 4.34
1335 1598 6.095860 TGCAACAGCAAGCTGAATAATAGAAT 59.904 34.615 27.17 0.00 46.30 2.40
1336 1599 5.415389 TGCAACAGCAAGCTGAATAATAGAA 59.585 36.000 27.17 2.18 46.30 2.10
1340 1603 4.524316 TTGCAACAGCAAGCTGAATAAT 57.476 36.364 27.17 2.65 46.30 1.28
1351 1614 9.757227 AAACTACTTTATTTATTTGCAACAGCA 57.243 25.926 0.00 0.00 36.26 4.41
1368 1631 9.566432 AATCATGAGAGAACTTCAAACTACTTT 57.434 29.630 0.09 0.00 0.00 2.66
1369 1632 9.566432 AAATCATGAGAGAACTTCAAACTACTT 57.434 29.630 0.09 0.00 0.00 2.24
1370 1633 9.566432 AAAATCATGAGAGAACTTCAAACTACT 57.434 29.630 0.09 0.00 0.00 2.57
1394 1657 9.952030 ACCAAAACTCTTTTAGGAAATCAAAAA 57.048 25.926 0.00 0.00 0.00 1.94
1395 1658 9.594478 GACCAAAACTCTTTTAGGAAATCAAAA 57.406 29.630 0.00 0.00 0.00 2.44
1396 1659 8.977412 AGACCAAAACTCTTTTAGGAAATCAAA 58.023 29.630 0.00 0.00 0.00 2.69
1397 1660 8.533569 AGACCAAAACTCTTTTAGGAAATCAA 57.466 30.769 0.00 0.00 0.00 2.57
1398 1661 9.635404 TTAGACCAAAACTCTTTTAGGAAATCA 57.365 29.630 0.00 0.00 0.00 2.57
1399 1662 9.894783 GTTAGACCAAAACTCTTTTAGGAAATC 57.105 33.333 0.00 0.00 0.00 2.17
1400 1663 9.416284 TGTTAGACCAAAACTCTTTTAGGAAAT 57.584 29.630 0.00 0.00 0.00 2.17
1401 1664 8.810990 TGTTAGACCAAAACTCTTTTAGGAAA 57.189 30.769 0.00 0.00 0.00 3.13
1402 1665 8.050930 ACTGTTAGACCAAAACTCTTTTAGGAA 58.949 33.333 0.00 0.00 0.00 3.36
1403 1666 7.571025 ACTGTTAGACCAAAACTCTTTTAGGA 58.429 34.615 0.00 0.00 0.00 2.94
1404 1667 7.803279 ACTGTTAGACCAAAACTCTTTTAGG 57.197 36.000 0.00 0.00 0.00 2.69
1461 1724 9.827411 GACGCTTTTCTTTCATATTTTAGTCTT 57.173 29.630 0.00 0.00 0.00 3.01
1462 1725 8.451748 GGACGCTTTTCTTTCATATTTTAGTCT 58.548 33.333 0.00 0.00 0.00 3.24
1463 1726 8.234546 TGGACGCTTTTCTTTCATATTTTAGTC 58.765 33.333 0.00 0.00 0.00 2.59
1464 1727 8.106247 TGGACGCTTTTCTTTCATATTTTAGT 57.894 30.769 0.00 0.00 0.00 2.24
1465 1728 9.573133 AATGGACGCTTTTCTTTCATATTTTAG 57.427 29.630 0.00 0.00 0.00 1.85
1466 1729 9.352784 CAATGGACGCTTTTCTTTCATATTTTA 57.647 29.630 0.00 0.00 0.00 1.52
1467 1730 7.872483 ACAATGGACGCTTTTCTTTCATATTTT 59.128 29.630 0.00 0.00 0.00 1.82
1468 1731 7.378181 ACAATGGACGCTTTTCTTTCATATTT 58.622 30.769 0.00 0.00 0.00 1.40
1469 1732 6.924111 ACAATGGACGCTTTTCTTTCATATT 58.076 32.000 0.00 0.00 0.00 1.28
1470 1733 6.375455 AGACAATGGACGCTTTTCTTTCATAT 59.625 34.615 0.00 0.00 0.00 1.78
1471 1734 5.705441 AGACAATGGACGCTTTTCTTTCATA 59.295 36.000 0.00 0.00 0.00 2.15
1472 1735 4.520492 AGACAATGGACGCTTTTCTTTCAT 59.480 37.500 0.00 0.00 0.00 2.57
1473 1736 3.882888 AGACAATGGACGCTTTTCTTTCA 59.117 39.130 0.00 0.00 0.00 2.69
1474 1737 4.467735 GAGACAATGGACGCTTTTCTTTC 58.532 43.478 0.00 0.00 0.00 2.62
1475 1738 3.253432 GGAGACAATGGACGCTTTTCTTT 59.747 43.478 0.00 0.00 0.00 2.52
1476 1739 2.814336 GGAGACAATGGACGCTTTTCTT 59.186 45.455 0.00 0.00 0.00 2.52
1477 1740 2.427506 GGAGACAATGGACGCTTTTCT 58.572 47.619 0.00 0.00 0.00 2.52
1478 1741 1.468914 GGGAGACAATGGACGCTTTTC 59.531 52.381 0.00 0.00 0.00 2.29
1479 1742 1.202879 TGGGAGACAATGGACGCTTTT 60.203 47.619 0.00 0.00 0.00 2.27
1480 1743 0.400213 TGGGAGACAATGGACGCTTT 59.600 50.000 0.00 0.00 0.00 3.51
1481 1744 0.620556 ATGGGAGACAATGGACGCTT 59.379 50.000 0.00 0.00 0.00 4.68
1482 1745 1.496060 TATGGGAGACAATGGACGCT 58.504 50.000 0.00 0.00 0.00 5.07
1483 1746 2.325583 TTATGGGAGACAATGGACGC 57.674 50.000 0.00 0.00 0.00 5.19
1484 1747 3.808728 ACATTATGGGAGACAATGGACG 58.191 45.455 0.00 0.00 34.63 4.79
1485 1748 6.483640 GTCTTACATTATGGGAGACAATGGAC 59.516 42.308 18.58 0.00 35.16 4.02
1486 1749 6.591935 GTCTTACATTATGGGAGACAATGGA 58.408 40.000 18.58 0.00 35.16 3.41
1487 1750 5.466728 CGTCTTACATTATGGGAGACAATGG 59.533 44.000 21.27 8.58 34.92 3.16
1488 1751 6.049149 ACGTCTTACATTATGGGAGACAATG 58.951 40.000 21.27 12.59 34.92 2.82
1489 1752 6.235231 ACGTCTTACATTATGGGAGACAAT 57.765 37.500 21.27 11.58 34.92 2.71
1490 1753 5.670792 ACGTCTTACATTATGGGAGACAA 57.329 39.130 21.27 0.00 34.92 3.18
1491 1754 5.670792 AACGTCTTACATTATGGGAGACA 57.329 39.130 21.27 0.00 34.92 3.41
1492 1755 6.980051 AAAACGTCTTACATTATGGGAGAC 57.020 37.500 15.49 15.49 33.19 3.36
1513 1776 1.732917 CTCCGTGCAGTGCCAAAAA 59.267 52.632 13.72 0.00 0.00 1.94
1514 1777 2.192861 CCTCCGTGCAGTGCCAAAA 61.193 57.895 13.72 0.00 0.00 2.44
1515 1778 2.594303 CCTCCGTGCAGTGCCAAA 60.594 61.111 13.72 0.00 0.00 3.28
1516 1779 4.641645 CCCTCCGTGCAGTGCCAA 62.642 66.667 13.72 0.00 0.00 4.52
1518 1781 4.767255 CTCCCTCCGTGCAGTGCC 62.767 72.222 13.72 2.92 0.00 5.01
1519 1782 2.646175 TACTCCCTCCGTGCAGTGC 61.646 63.158 8.58 8.58 0.00 4.40
1520 1783 1.215647 GTACTCCCTCCGTGCAGTG 59.784 63.158 0.00 0.00 0.00 3.66
1521 1784 0.542232 AAGTACTCCCTCCGTGCAGT 60.542 55.000 0.00 0.00 0.00 4.40
1522 1785 1.134560 GTAAGTACTCCCTCCGTGCAG 59.865 57.143 0.00 0.00 0.00 4.41
1523 1786 1.180029 GTAAGTACTCCCTCCGTGCA 58.820 55.000 0.00 0.00 0.00 4.57
1524 1787 1.472188 AGTAAGTACTCCCTCCGTGC 58.528 55.000 0.00 0.00 0.00 5.34
1525 1788 4.268359 AGTAAGTAAGTACTCCCTCCGTG 58.732 47.826 0.00 0.00 34.99 4.94
1526 1789 4.582973 AGTAAGTAAGTACTCCCTCCGT 57.417 45.455 0.00 0.00 34.99 4.69
1527 1790 5.679601 ACTAGTAAGTAAGTACTCCCTCCG 58.320 45.833 0.00 0.00 35.85 4.63
1528 1791 5.757808 CGACTAGTAAGTAAGTACTCCCTCC 59.242 48.000 0.00 0.00 35.56 4.30
1529 1792 6.578023 TCGACTAGTAAGTAAGTACTCCCTC 58.422 44.000 0.00 0.00 35.56 4.30
1530 1793 6.552445 TCGACTAGTAAGTAAGTACTCCCT 57.448 41.667 0.00 0.00 35.56 4.20
1531 1794 6.145371 CGATCGACTAGTAAGTAAGTACTCCC 59.855 46.154 10.26 0.00 35.56 4.30
1532 1795 6.920758 TCGATCGACTAGTAAGTAAGTACTCC 59.079 42.308 15.15 0.00 35.56 3.85
1533 1796 7.922505 TCGATCGACTAGTAAGTAAGTACTC 57.077 40.000 15.15 0.00 35.56 2.59
1534 1797 8.359642 AGATCGATCGACTAGTAAGTAAGTACT 58.640 37.037 22.06 0.00 35.56 2.73
1535 1798 8.519492 AGATCGATCGACTAGTAAGTAAGTAC 57.481 38.462 22.06 0.00 35.56 2.73
1566 1840 4.211920 AGAGATGGACTAGCAACCTACTC 58.788 47.826 0.00 5.23 33.39 2.59
1571 1848 3.567397 TCCTAGAGATGGACTAGCAACC 58.433 50.000 0.00 0.00 36.85 3.77
1576 1853 5.626142 TGTAGCTTCCTAGAGATGGACTAG 58.374 45.833 0.00 0.00 37.61 2.57
1583 1860 6.219563 AGGGAGATATGTAGCTTCCTAGAGAT 59.780 42.308 3.29 0.00 45.66 2.75
1591 1870 5.708877 ACGTTAGGGAGATATGTAGCTTC 57.291 43.478 0.00 0.00 0.00 3.86
1654 1933 1.424403 GCCAATAAAACACGGTTGCC 58.576 50.000 0.00 0.00 0.00 4.52
1674 1953 4.006319 AGCAAGGACAAGTCTGAATTAGC 58.994 43.478 0.00 0.00 0.00 3.09
1682 1961 9.553064 CTAATCAATAATAGCAAGGACAAGTCT 57.447 33.333 0.00 0.00 0.00 3.24
1710 1993 2.108168 CATAAACTGGACGGAGGGAGA 58.892 52.381 0.00 0.00 0.00 3.71
1721 2004 3.506398 ACAAAGGAACCCCATAAACTGG 58.494 45.455 0.00 0.00 45.51 4.00
1722 2005 6.850752 AATACAAAGGAACCCCATAAACTG 57.149 37.500 0.00 0.00 33.88 3.16
1726 2009 5.485708 CCCAAAATACAAAGGAACCCCATAA 59.514 40.000 0.00 0.00 33.88 1.90
1728 2011 3.843619 CCCAAAATACAAAGGAACCCCAT 59.156 43.478 0.00 0.00 33.88 4.00
1729 2012 3.243724 CCCAAAATACAAAGGAACCCCA 58.756 45.455 0.00 0.00 33.88 4.96
1730 2013 3.244582 ACCCAAAATACAAAGGAACCCC 58.755 45.455 0.00 0.00 0.00 4.95
1731 2014 3.898741 TGACCCAAAATACAAAGGAACCC 59.101 43.478 0.00 0.00 0.00 4.11
1732 2015 5.538849 TTGACCCAAAATACAAAGGAACC 57.461 39.130 0.00 0.00 0.00 3.62
1733 2016 8.445275 AAATTTGACCCAAAATACAAAGGAAC 57.555 30.769 0.00 0.00 36.90 3.62
1734 2017 8.897752 CAAAATTTGACCCAAAATACAAAGGAA 58.102 29.630 0.00 0.00 36.90 3.36
1735 2018 8.267894 TCAAAATTTGACCCAAAATACAAAGGA 58.732 29.630 4.03 0.00 36.90 3.36
1736 2019 8.443953 TCAAAATTTGACCCAAAATACAAAGG 57.556 30.769 4.03 0.00 36.90 3.11
1875 2182 7.545615 GGATTGAAGTTTGTCCATGGATTTAAC 59.454 37.037 19.62 20.13 0.00 2.01
1883 2190 8.830201 TTATTTTGGATTGAAGTTTGTCCATG 57.170 30.769 5.88 0.00 40.22 3.66
1888 2195 9.533253 CTCAACTTATTTTGGATTGAAGTTTGT 57.467 29.630 0.00 0.00 38.06 2.83
1896 2203 5.665916 AGGCCTCAACTTATTTTGGATTG 57.334 39.130 0.00 0.00 0.00 2.67
1910 2217 3.370103 CGTCAGGGTTTATTAGGCCTCAA 60.370 47.826 9.68 2.32 0.00 3.02
1911 2218 2.169769 CGTCAGGGTTTATTAGGCCTCA 59.830 50.000 9.68 0.00 0.00 3.86
1916 2223 4.482952 AACTCCGTCAGGGTTTATTAGG 57.517 45.455 0.00 0.00 38.33 2.69
1925 2232 2.431057 AGTGCTATTAACTCCGTCAGGG 59.569 50.000 0.00 0.00 38.33 4.45
1926 2233 3.802948 AGTGCTATTAACTCCGTCAGG 57.197 47.619 0.00 0.00 39.46 3.86
1928 2235 5.651139 AGAAGTAGTGCTATTAACTCCGTCA 59.349 40.000 0.00 0.00 0.00 4.35
1939 2246 6.940739 ACAAGTTGATGAGAAGTAGTGCTAT 58.059 36.000 10.54 0.00 0.00 2.97
1943 2250 8.031864 AGTATGACAAGTTGATGAGAAGTAGTG 58.968 37.037 10.54 0.00 0.00 2.74
1950 2257 6.073058 GCAAACAGTATGACAAGTTGATGAGA 60.073 38.462 10.54 0.00 39.69 3.27
1975 2282 8.523658 ACCTGTAGTATGCATGTATATAGTGTG 58.476 37.037 10.16 0.00 26.53 3.82
1976 2283 8.523658 CACCTGTAGTATGCATGTATATAGTGT 58.476 37.037 10.16 5.05 27.47 3.55
1996 2353 3.815401 GCTAGAAACAACACATCACCTGT 59.185 43.478 0.00 0.00 39.20 4.00
1999 2356 3.563808 TGTGCTAGAAACAACACATCACC 59.436 43.478 0.00 0.00 38.07 4.02
2003 2360 5.835113 AACTTGTGCTAGAAACAACACAT 57.165 34.783 7.20 0.00 42.20 3.21
2077 2444 4.932200 CCCACTTGAGACTTGACAGATTAC 59.068 45.833 0.00 0.00 0.00 1.89
2091 2458 0.820891 AACTGTGCTGCCCACTTGAG 60.821 55.000 0.00 0.00 44.92 3.02
2093 2460 0.461135 AAAACTGTGCTGCCCACTTG 59.539 50.000 0.00 2.67 44.92 3.16
2094 2461 1.194218 AAAAACTGTGCTGCCCACTT 58.806 45.000 0.00 0.00 44.92 3.16
2095 2462 2.065899 TAAAAACTGTGCTGCCCACT 57.934 45.000 0.00 0.00 44.92 4.00
2096 2463 3.385193 AATAAAAACTGTGCTGCCCAC 57.615 42.857 0.00 0.00 44.90 4.61
2097 2464 4.414337 AAAATAAAAACTGTGCTGCCCA 57.586 36.364 0.00 0.00 0.00 5.36
2125 2679 4.072131 TGCAAGCCAGTTCCTTAACTAAG 58.928 43.478 0.00 0.00 44.28 2.18
2158 2721 1.342975 GGGGGTGGAAAATGCTGGTAT 60.343 52.381 0.00 0.00 0.00 2.73
2159 2722 0.040499 GGGGGTGGAAAATGCTGGTA 59.960 55.000 0.00 0.00 0.00 3.25
2160 2723 1.229177 GGGGGTGGAAAATGCTGGT 60.229 57.895 0.00 0.00 0.00 4.00
2161 2724 0.972471 GAGGGGGTGGAAAATGCTGG 60.972 60.000 0.00 0.00 0.00 4.85
2162 2725 0.251742 TGAGGGGGTGGAAAATGCTG 60.252 55.000 0.00 0.00 0.00 4.41
2163 2726 0.251787 GTGAGGGGGTGGAAAATGCT 60.252 55.000 0.00 0.00 0.00 3.79
2164 2727 0.251787 AGTGAGGGGGTGGAAAATGC 60.252 55.000 0.00 0.00 0.00 3.56
2165 2728 1.616994 GGAGTGAGGGGGTGGAAAATG 60.617 57.143 0.00 0.00 0.00 2.32
2166 2729 0.704664 GGAGTGAGGGGGTGGAAAAT 59.295 55.000 0.00 0.00 0.00 1.82
2167 2730 0.402861 AGGAGTGAGGGGGTGGAAAA 60.403 55.000 0.00 0.00 0.00 2.29
2189 2754 6.303839 TCTTGGTTGAAGTAGGCAAATACTT 58.696 36.000 7.67 7.67 46.23 2.24
2305 2964 5.564550 ACAATTGCACATAGAAAGAGAGGT 58.435 37.500 5.05 0.00 0.00 3.85
2353 3020 2.029200 TGTAGACGCAAACGGGATGTTA 60.029 45.455 0.00 0.00 46.04 2.41
2355 3022 0.319083 TGTAGACGCAAACGGGATGT 59.681 50.000 0.00 0.00 46.04 3.06
2356 3023 0.719465 GTGTAGACGCAAACGGGATG 59.281 55.000 0.00 0.00 46.04 3.51
2360 3027 1.136721 CGAAAGTGTAGACGCAAACGG 60.137 52.381 0.00 0.00 46.04 4.44
2370 3038 4.169508 CTCAGTGGATGTCGAAAGTGTAG 58.830 47.826 0.00 0.00 0.00 2.74
2392 3078 6.308766 CACACATAAAATTAGCAACAGAAGCC 59.691 38.462 0.00 0.00 0.00 4.35
2411 3097 1.672854 GCATGCATGGAGCCACACAT 61.673 55.000 27.34 0.00 44.83 3.21
2412 3098 2.344981 GCATGCATGGAGCCACACA 61.345 57.895 27.34 0.00 44.83 3.72
2415 3101 2.782222 CCAGCATGCATGGAGCCAC 61.782 63.158 27.34 10.03 44.83 5.01
2430 3119 2.167219 CGCCACGTCTGCATACCAG 61.167 63.158 7.31 0.00 43.17 4.00
2463 3152 3.006967 GGAAGCTGAAGAAGTACCACTCA 59.993 47.826 0.00 0.00 0.00 3.41
2592 3281 4.598894 CGGCCGGAGCTGGATGAG 62.599 72.222 20.10 0.00 42.09 2.90
2741 3430 6.209391 ACTTTATATTGCAAGAGTTTGGCACT 59.791 34.615 4.94 0.00 39.07 4.40
2742 3431 6.389906 ACTTTATATTGCAAGAGTTTGGCAC 58.610 36.000 4.94 0.00 34.79 5.01
2781 3564 9.027202 AGCCCGGTTAGAAGAAATAATTAAAAA 57.973 29.630 0.00 0.00 0.00 1.94
2782 3565 8.584063 AGCCCGGTTAGAAGAAATAATTAAAA 57.416 30.769 0.00 0.00 0.00 1.52
2783 3566 8.050930 AGAGCCCGGTTAGAAGAAATAATTAAA 58.949 33.333 0.00 0.00 0.00 1.52
2784 3567 7.571025 AGAGCCCGGTTAGAAGAAATAATTAA 58.429 34.615 0.00 0.00 0.00 1.40
2785 3568 7.133133 AGAGCCCGGTTAGAAGAAATAATTA 57.867 36.000 0.00 0.00 0.00 1.40
2786 3569 6.002653 AGAGCCCGGTTAGAAGAAATAATT 57.997 37.500 0.00 0.00 0.00 1.40
2787 3570 5.130477 TGAGAGCCCGGTTAGAAGAAATAAT 59.870 40.000 0.00 0.00 0.00 1.28
2788 3571 4.468510 TGAGAGCCCGGTTAGAAGAAATAA 59.531 41.667 0.00 0.00 0.00 1.40
2789 3572 4.028131 TGAGAGCCCGGTTAGAAGAAATA 58.972 43.478 0.00 0.00 0.00 1.40
2790 3573 2.838202 TGAGAGCCCGGTTAGAAGAAAT 59.162 45.455 0.00 0.00 0.00 2.17
2791 3574 2.028385 GTGAGAGCCCGGTTAGAAGAAA 60.028 50.000 0.00 0.00 0.00 2.52
2792 3575 1.549170 GTGAGAGCCCGGTTAGAAGAA 59.451 52.381 0.00 0.00 0.00 2.52
2793 3576 1.183549 GTGAGAGCCCGGTTAGAAGA 58.816 55.000 0.00 0.00 0.00 2.87
2794 3577 0.175989 GGTGAGAGCCCGGTTAGAAG 59.824 60.000 0.00 0.00 0.00 2.85
2795 3578 1.262640 GGGTGAGAGCCCGGTTAGAA 61.263 60.000 0.00 0.00 39.17 2.10
2796 3579 1.684734 GGGTGAGAGCCCGGTTAGA 60.685 63.158 0.00 0.00 39.17 2.10
2797 3580 2.901042 GGGTGAGAGCCCGGTTAG 59.099 66.667 0.00 0.00 39.17 2.34
2804 3587 2.505364 AATGGCAAGGGGTGAGAGCC 62.505 60.000 0.00 0.00 45.41 4.70
2805 3588 0.255890 TAATGGCAAGGGGTGAGAGC 59.744 55.000 0.00 0.00 0.00 4.09
2806 3589 2.806945 TTAATGGCAAGGGGTGAGAG 57.193 50.000 0.00 0.00 0.00 3.20
2807 3590 2.580322 TGATTAATGGCAAGGGGTGAGA 59.420 45.455 0.00 0.00 0.00 3.27
2808 3591 2.689983 GTGATTAATGGCAAGGGGTGAG 59.310 50.000 0.00 0.00 0.00 3.51
2809 3592 2.311542 AGTGATTAATGGCAAGGGGTGA 59.688 45.455 0.00 0.00 0.00 4.02
2810 3593 2.738743 AGTGATTAATGGCAAGGGGTG 58.261 47.619 0.00 0.00 0.00 4.61
2811 3594 3.473113 AAGTGATTAATGGCAAGGGGT 57.527 42.857 0.00 0.00 0.00 4.95
2812 3595 5.186797 TGTTTAAGTGATTAATGGCAAGGGG 59.813 40.000 0.00 0.00 0.00 4.79
2813 3596 6.152661 TCTGTTTAAGTGATTAATGGCAAGGG 59.847 38.462 0.00 0.00 0.00 3.95
2814 3597 7.156876 TCTGTTTAAGTGATTAATGGCAAGG 57.843 36.000 0.00 0.00 0.00 3.61
2815 3598 9.643693 ATTTCTGTTTAAGTGATTAATGGCAAG 57.356 29.630 0.00 0.00 0.00 4.01
2832 3615 9.220767 GGAGACTTGTACTGAATATTTCTGTTT 57.779 33.333 5.32 0.00 41.31 2.83
2833 3616 8.375506 TGGAGACTTGTACTGAATATTTCTGTT 58.624 33.333 5.32 0.00 41.31 3.16
2834 3617 7.907389 TGGAGACTTGTACTGAATATTTCTGT 58.093 34.615 0.00 5.34 43.13 3.41
2835 3618 8.954950 ATGGAGACTTGTACTGAATATTTCTG 57.045 34.615 0.00 0.00 35.09 3.02
2836 3619 9.965902 AAATGGAGACTTGTACTGAATATTTCT 57.034 29.630 0.00 0.00 0.00 2.52
2837 3620 9.994432 CAAATGGAGACTTGTACTGAATATTTC 57.006 33.333 0.00 0.00 0.00 2.17
2838 3621 9.739276 TCAAATGGAGACTTGTACTGAATATTT 57.261 29.630 0.00 0.00 0.00 1.40
2856 3639 9.352784 CGCTTATCAATTAAAAACTCAAATGGA 57.647 29.630 0.00 0.00 0.00 3.41
2857 3640 9.352784 TCGCTTATCAATTAAAAACTCAAATGG 57.647 29.630 0.00 0.00 0.00 3.16
2860 3643 8.859156 GCATCGCTTATCAATTAAAAACTCAAA 58.141 29.630 0.00 0.00 0.00 2.69
2861 3644 8.243426 AGCATCGCTTATCAATTAAAAACTCAA 58.757 29.630 0.00 0.00 33.89 3.02
2897 3682 9.125906 CTGAACAAACAAAATTCAAATGCAAAA 57.874 25.926 0.00 0.00 32.19 2.44
2951 3736 1.149148 GTGTCGGCTTTCTTCTGGTC 58.851 55.000 0.00 0.00 0.00 4.02
2981 3766 2.743928 CTCCTGCTTGCCGTCCAC 60.744 66.667 0.00 0.00 0.00 4.02
3084 3869 0.530870 GGAAGGCGAGTGCTGATACC 60.531 60.000 0.00 0.00 42.25 2.73
3440 4237 4.552572 CGTACCGGTTTTTGTCAACTAACC 60.553 45.833 15.04 14.69 37.31 2.85
3491 4288 0.970937 CACCTTGTCTAGCTCCCCGA 60.971 60.000 0.00 0.00 0.00 5.14
3528 4329 2.224066 GGTGTGCGTCTTATCATAGCCT 60.224 50.000 0.00 0.00 0.00 4.58
3681 4718 5.223225 GAGGAAATAAGTTCTTCTTGGCG 57.777 43.478 0.00 0.00 38.87 5.69
3741 4778 1.962807 TGGACAAGCCCAAAACATCAG 59.037 47.619 0.00 0.00 34.97 2.90
4027 5065 4.487019 CCTCTCGTACCTTGAAGAAGAAC 58.513 47.826 0.00 0.00 0.00 3.01
4068 5112 3.513912 TCTTGGCTGAAGAAATCTACCGA 59.486 43.478 0.00 0.00 37.78 4.69
4104 5148 5.431765 TGAGATTATTGAGAAGCCTTGGAC 58.568 41.667 0.00 0.00 0.00 4.02
4191 5235 1.077787 TCAGTTTATGGCGGGGCAG 60.078 57.895 0.45 0.00 0.00 4.85
4237 5281 7.645058 AGTTTCCTTTCAAGACTTCATTTCA 57.355 32.000 0.00 0.00 0.00 2.69
4291 5335 4.338118 TCTCTTCGATTGCTTGTTTTGGTT 59.662 37.500 0.00 0.00 0.00 3.67
4307 5351 7.539712 TGATTAGCTAATTTTGGTCTCTTCG 57.460 36.000 19.77 0.00 0.00 3.79
4353 5397 2.656646 CACGTGCTACTGGGCAGA 59.343 61.111 0.82 0.00 43.25 4.26
4369 5413 3.113514 TTCCTGTCCGGTGCAAGCA 62.114 57.895 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.