Multiple sequence alignment - TraesCS6D01G362600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G362600 chr6D 100.000 6517 0 0 1 6517 453009098 453015614 0.000000e+00 12035.0
1 TraesCS6D01G362600 chr6B 91.451 3322 166 58 2418 5710 688299725 688302957 0.000000e+00 4453.0
2 TraesCS6D01G362600 chr6B 92.717 2499 86 53 1 2427 688297204 688299678 0.000000e+00 3518.0
3 TraesCS6D01G362600 chr6B 85.350 157 22 1 5863 6019 661915694 661915539 1.880000e-35 161.0
4 TraesCS6D01G362600 chr6B 82.500 160 8 8 6212 6368 688303453 688303595 8.870000e-24 122.0
5 TraesCS6D01G362600 chr6B 94.667 75 4 0 5756 5830 563489156 563489230 4.130000e-22 117.0
6 TraesCS6D01G362600 chr6B 92.308 39 1 2 6140 6178 688303354 688303390 3.000000e-03 54.7
7 TraesCS6D01G362600 chr6A 89.187 2238 161 50 3558 5752 599049883 599052082 0.000000e+00 2717.0
8 TraesCS6D01G362600 chr6A 86.700 1609 134 43 814 2383 599047176 599048743 0.000000e+00 1712.0
9 TraesCS6D01G362600 chr6A 89.479 1036 64 15 2559 3578 599048870 599049876 0.000000e+00 1267.0
10 TraesCS6D01G362600 chr6A 93.383 665 28 10 1 657 599046191 599046847 0.000000e+00 970.0
11 TraesCS6D01G362600 chr6A 83.636 385 27 16 6132 6510 599052737 599053091 4.870000e-86 329.0
12 TraesCS6D01G362600 chr6A 85.393 89 13 0 6022 6110 23379247 23379159 6.960000e-15 93.5
13 TraesCS6D01G362600 chr1A 88.235 153 11 3 2419 2571 252511712 252511857 6.720000e-40 176.0
14 TraesCS6D01G362600 chr1A 82.803 157 27 0 5863 6019 537067139 537067295 2.450000e-29 141.0
15 TraesCS6D01G362600 chrUn 87.662 154 13 3 2423 2571 318938449 318938601 2.420000e-39 174.0
16 TraesCS6D01G362600 chrUn 93.590 78 4 1 5757 5833 87249005 87248928 1.480000e-21 115.0
17 TraesCS6D01G362600 chr4B 85.714 161 17 3 2419 2574 328114202 328114043 1.450000e-36 165.0
18 TraesCS6D01G362600 chr4B 85.987 157 15 4 2424 2574 40472197 40472352 1.880000e-35 161.0
19 TraesCS6D01G362600 chr4B 89.024 82 9 0 6022 6103 632323272 632323191 1.160000e-17 102.0
20 TraesCS6D01G362600 chr4B 88.750 80 8 1 6022 6101 411519049 411519127 5.380000e-16 97.1
21 TraesCS6D01G362600 chr5D 86.275 153 15 4 2425 2571 128577427 128577579 1.880000e-35 161.0
22 TraesCS6D01G362600 chr5D 93.506 77 3 2 5758 5833 361648072 361647997 5.340000e-21 113.0
23 TraesCS6D01G362600 chr5B 85.350 157 22 1 5863 6019 600115092 600115247 1.880000e-35 161.0
24 TraesCS6D01G362600 chr5B 86.111 144 19 1 5863 6006 608363241 608363383 3.150000e-33 154.0
25 TraesCS6D01G362600 chr2D 86.806 144 19 0 5867 6010 6865026 6864883 1.880000e-35 161.0
26 TraesCS6D01G362600 chr2D 77.985 268 32 13 5861 6103 584259967 584260232 6.810000e-30 143.0
27 TraesCS6D01G362600 chr2D 88.172 93 7 4 5742 5833 284537221 284537310 2.480000e-19 108.0
28 TraesCS6D01G362600 chr2D 87.952 83 8 2 6024 6105 578005598 578005679 5.380000e-16 97.1
29 TraesCS6D01G362600 chr2B 84.906 159 18 3 2418 2571 168865281 168865438 8.750000e-34 156.0
30 TraesCS6D01G362600 chr2B 93.750 80 3 2 5756 5833 122381600 122381521 1.150000e-22 119.0
31 TraesCS6D01G362600 chr2B 88.462 52 6 0 2370 2421 104006205 104006154 5.460000e-06 63.9
32 TraesCS6D01G362600 chr2A 84.906 159 18 3 2418 2571 119341893 119342050 8.750000e-34 156.0
33 TraesCS6D01G362600 chr5A 83.851 161 25 1 5859 6019 444905500 444905341 1.130000e-32 152.0
34 TraesCS6D01G362600 chr5A 89.247 93 7 3 5743 5833 290115390 290115481 5.340000e-21 113.0
35 TraesCS6D01G362600 chr7A 84.076 157 24 1 5863 6019 701052918 701053073 4.070000e-32 150.0
36 TraesCS6D01G362600 chr7A 87.931 58 6 1 2371 2427 412079746 412079689 4.220000e-07 67.6
37 TraesCS6D01G362600 chr3A 83.436 163 26 1 5859 6021 75969319 75969158 4.070000e-32 150.0
38 TraesCS6D01G362600 chr3A 83.553 152 23 2 5859 6010 732636166 732636315 2.450000e-29 141.0
39 TraesCS6D01G362600 chr7B 83.333 162 24 3 2419 2578 505937736 505937576 5.270000e-31 147.0
40 TraesCS6D01G362600 chr7B 93.750 80 3 2 5755 5833 266185909 266185987 1.150000e-22 119.0
41 TraesCS6D01G362600 chr7B 94.737 76 3 1 5759 5833 295083298 295083223 4.130000e-22 117.0
42 TraesCS6D01G362600 chr7B 94.737 76 3 1 5759 5833 705686244 705686319 4.130000e-22 117.0
43 TraesCS6D01G362600 chr7B 100.000 31 0 0 416 446 566837840 566837810 2.540000e-04 58.4
44 TraesCS6D01G362600 chr1D 77.733 247 42 11 5861 6103 203265103 203264866 8.810000e-29 139.0
45 TraesCS6D01G362600 chr1B 87.805 82 10 0 6022 6103 581315287 581315368 5.380000e-16 97.1
46 TraesCS6D01G362600 chr3D 87.805 82 9 1 6022 6103 519714337 519714257 1.930000e-15 95.3
47 TraesCS6D01G362600 chr4A 86.747 83 11 0 6022 6104 708684022 708684104 6.960000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G362600 chr6D 453009098 453015614 6516 False 12035.000 12035 100.000 1 6517 1 chr6D.!!$F1 6516
1 TraesCS6D01G362600 chr6B 688297204 688303595 6391 False 2036.925 4453 89.744 1 6368 4 chr6B.!!$F2 6367
2 TraesCS6D01G362600 chr6A 599046191 599053091 6900 False 1399.000 2717 88.477 1 6510 5 chr6A.!!$F1 6509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 566 0.322816 TTGCAACCTCTGGATCTGCC 60.323 55.0 0.00 0.00 31.92 4.85 F
1214 1434 0.591741 CCAGTAATCTCGTCGGCGTC 60.592 60.0 10.18 0.00 39.49 5.19 F
1896 2145 0.607489 CCTGGTCTGGCAGAAACTGG 60.607 60.0 20.62 21.99 31.21 4.00 F
3026 3376 0.109597 GCAAGCATGACCACTTTCCG 60.110 55.0 0.00 0.00 0.00 4.30 F
3360 3710 0.378257 GCTATTGCACACACGGATGG 59.622 55.0 0.00 0.00 39.41 3.51 F
4948 5330 0.910088 GGTAAGTCTCTGGCCTGGGT 60.910 60.0 9.64 0.00 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1363 1590 0.315886 TACACGGCGCAGAGAAGAAA 59.684 50.000 16.26 0.00 0.00 2.52 R
3008 3358 0.109597 GCGGAAAGTGGTCATGCTTG 60.110 55.000 0.00 0.00 0.00 4.01 R
3662 4039 1.205655 CCGTCCTTGAGCTGATTCTCA 59.794 52.381 0.00 0.00 40.99 3.27 R
4971 5353 0.034059 ATTCTGATTAGGAGGCGGCG 59.966 55.000 0.51 0.51 0.00 6.46 R
5137 5520 0.036164 CCGGGATGAGGTTGAACACA 59.964 55.000 0.00 0.00 0.00 3.72 R
6259 7138 0.032615 GGCAGAGAGGAAGGAGGAGA 60.033 60.000 0.00 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.262915 CTGGAGTGGGCGAGTCAC 59.737 66.667 6.67 0.00 35.51 3.67
67 68 2.125512 GCAAGAGGGTCGCGTGAT 60.126 61.111 5.77 0.00 0.00 3.06
133 134 4.567747 GGCAAGAGGAAATAACAGGAAGGA 60.568 45.833 0.00 0.00 0.00 3.36
171 179 2.667448 CGAACCTGAGAACGAACGATGA 60.667 50.000 0.14 0.00 0.00 2.92
174 182 3.318017 ACCTGAGAACGAACGATGAAAG 58.682 45.455 0.14 0.00 0.00 2.62
361 377 1.469308 TGTTGGTTGTTGTTGTCGTCC 59.531 47.619 0.00 0.00 0.00 4.79
399 422 1.966845 TAGGGCCAAGTCCTAGCTTT 58.033 50.000 6.18 0.00 39.09 3.51
536 566 0.322816 TTGCAACCTCTGGATCTGCC 60.323 55.000 0.00 0.00 31.92 4.85
606 637 9.603921 AATTTGCAATTTCCTTGGTTATAGATG 57.396 29.630 0.00 0.00 35.25 2.90
640 671 2.807392 TGCGGTATCGTGACGTATATGA 59.193 45.455 4.40 0.00 38.89 2.15
642 673 3.601211 GCGGTATCGTGACGTATATGAAC 59.399 47.826 4.40 0.00 38.89 3.18
887 1095 3.599343 ACGGAAGTAAAATAACCCGGTC 58.401 45.455 0.00 0.00 46.88 4.79
889 1097 3.369787 CGGAAGTAAAATAACCCGGTCCT 60.370 47.826 0.00 0.00 33.94 3.85
894 1102 5.005740 AGTAAAATAACCCGGTCCTTGTTC 58.994 41.667 0.00 0.00 0.00 3.18
897 1105 1.829523 TAACCCGGTCCTTGTTCCCG 61.830 60.000 0.00 0.00 41.37 5.14
964 1172 3.304190 CGTTTTCACTTTACCCCCGAAAG 60.304 47.826 0.00 0.00 39.38 2.62
1003 1211 3.443925 CTCCAGCGCTCGAGGACA 61.444 66.667 22.68 0.00 0.00 4.02
1004 1212 3.408501 CTCCAGCGCTCGAGGACAG 62.409 68.421 22.68 5.73 0.00 3.51
1005 1213 4.504916 CCAGCGCTCGAGGACAGG 62.505 72.222 15.58 0.00 0.00 4.00
1006 1214 3.443925 CAGCGCTCGAGGACAGGA 61.444 66.667 15.58 0.00 0.00 3.86
1007 1215 3.137459 AGCGCTCGAGGACAGGAG 61.137 66.667 15.58 0.00 0.00 3.69
1008 1216 4.200283 GCGCTCGAGGACAGGAGG 62.200 72.222 15.58 0.00 0.00 4.30
1009 1217 2.438614 CGCTCGAGGACAGGAGGA 60.439 66.667 15.58 0.00 0.00 3.71
1010 1218 1.826054 CGCTCGAGGACAGGAGGAT 60.826 63.158 15.58 0.00 0.00 3.24
1017 1225 1.825474 GAGGACAGGAGGATTTGACGA 59.175 52.381 0.00 0.00 0.00 4.20
1039 1247 3.075884 AGTGACGACTCTCTGACTAACC 58.924 50.000 0.00 0.00 0.00 2.85
1040 1248 2.162008 GTGACGACTCTCTGACTAACCC 59.838 54.545 0.00 0.00 0.00 4.11
1041 1249 2.040012 TGACGACTCTCTGACTAACCCT 59.960 50.000 0.00 0.00 0.00 4.34
1042 1250 3.262660 TGACGACTCTCTGACTAACCCTA 59.737 47.826 0.00 0.00 0.00 3.53
1043 1251 3.872771 GACGACTCTCTGACTAACCCTAG 59.127 52.174 0.00 0.00 0.00 3.02
1214 1434 0.591741 CCAGTAATCTCGTCGGCGTC 60.592 60.000 10.18 0.00 39.49 5.19
1392 1619 3.437395 TCTGCGCCGTGTAATTTATTTGT 59.563 39.130 4.18 0.00 0.00 2.83
1514 1755 0.663153 GCGGATCCACAAGGCAATAC 59.337 55.000 13.41 0.00 33.74 1.89
1528 1769 2.420547 GGCAATACATCTGTCCTCAGCA 60.421 50.000 0.00 0.00 41.10 4.41
1556 1802 2.632996 TCCCCCGAATGTTATAGCTCTG 59.367 50.000 0.00 0.00 0.00 3.35
1559 1805 4.039973 CCCCCGAATGTTATAGCTCTGTTA 59.960 45.833 0.00 0.00 0.00 2.41
1582 1828 5.248640 AGGATGAATTTGATGTGACTTCGT 58.751 37.500 0.00 0.00 0.00 3.85
1634 1880 6.701340 TCATGCTCTCAAATACAGTGTTACT 58.299 36.000 0.00 0.00 0.00 2.24
1643 1889 3.143675 CAGTGTTACTGCTGGCGAT 57.856 52.632 0.00 0.00 39.62 4.58
1691 1937 2.517450 CGAGGTGAAGCGGCGAATC 61.517 63.158 12.98 8.40 0.00 2.52
1837 2083 5.171476 TCTGCTTCTCGAAGAAATGGTAAG 58.829 41.667 10.68 0.00 40.79 2.34
1860 2109 5.893824 AGATGGGAGTTCAGTTTTTCTGTTT 59.106 36.000 0.00 0.00 43.97 2.83
1868 2117 8.110860 AGTTCAGTTTTTCTGTTTCTCTTTCA 57.889 30.769 0.00 0.00 43.97 2.69
1896 2145 0.607489 CCTGGTCTGGCAGAAACTGG 60.607 60.000 20.62 21.99 31.21 4.00
1920 2170 2.845967 GCTCACGTTGTCACTTTTGTTG 59.154 45.455 0.00 0.00 0.00 3.33
2290 2567 3.531538 TCAATGAGCGAGTATGGTTTCC 58.468 45.455 0.00 0.00 0.00 3.13
2291 2568 2.225068 ATGAGCGAGTATGGTTTCCG 57.775 50.000 0.00 0.00 0.00 4.30
2542 2877 7.719633 AGGTTTGACTTGAGACAAAAGCTAATA 59.280 33.333 9.53 0.00 40.22 0.98
2582 2917 5.933617 ACGGAGGGAGTAAAACTTAGTTTT 58.066 37.500 23.78 23.78 45.80 2.43
2609 2944 6.252599 AGCTCTTGGTTGTATGATGGATTA 57.747 37.500 0.00 0.00 0.00 1.75
2748 3098 7.182026 TGGGAGTCTCCTGTAATGAAAGAAATA 59.818 37.037 18.58 0.00 36.57 1.40
2757 3107 7.148018 CCTGTAATGAAAGAAATATGCCACAGT 60.148 37.037 0.00 0.00 0.00 3.55
2775 3125 3.817647 ACAGTTTTGTTCCTCTCTGCATC 59.182 43.478 0.00 0.00 32.28 3.91
2819 3169 3.888323 TGTAAATGCTGGTCTTTTGCTCA 59.112 39.130 0.00 0.00 0.00 4.26
2959 3309 3.743396 GTGTAAGTTTGAGGAGCTGACTG 59.257 47.826 0.00 0.00 0.00 3.51
2962 3312 3.845781 AGTTTGAGGAGCTGACTGAAA 57.154 42.857 0.00 0.00 0.00 2.69
3008 3358 6.106673 TGTTTTAGAATGCTAGGTAGACTGC 58.893 40.000 0.00 0.00 0.00 4.40
3011 3361 4.399004 AGAATGCTAGGTAGACTGCAAG 57.601 45.455 0.00 0.00 37.00 4.01
3026 3376 0.109597 GCAAGCATGACCACTTTCCG 60.110 55.000 0.00 0.00 0.00 4.30
3094 3444 4.858935 TGTTGAGTTTTCTTATGCACAGC 58.141 39.130 0.00 0.00 0.00 4.40
3226 3576 2.751259 TGCTGATTCCATTGCTTCAGTC 59.249 45.455 0.00 0.00 38.26 3.51
3323 3673 4.256920 TGCTGAAGAGAATTCTAGTTGCC 58.743 43.478 8.25 0.00 31.96 4.52
3355 3705 1.372582 ATGGAGCTATTGCACACACG 58.627 50.000 1.12 0.00 42.74 4.49
3360 3710 0.378257 GCTATTGCACACACGGATGG 59.622 55.000 0.00 0.00 39.41 3.51
3366 3716 1.862602 GCACACACGGATGGGGAAAC 61.863 60.000 0.00 0.00 31.22 2.78
3510 3860 1.611673 GCAAGGTGCATACTCCTGTGT 60.612 52.381 0.00 0.00 44.26 3.72
3563 3940 3.441241 CTCCGCCTGGTAGGAGTAT 57.559 57.895 23.44 0.00 46.68 2.12
3616 3993 7.402054 TGGACACTCACTTACAATTCCATTAT 58.598 34.615 0.00 0.00 0.00 1.28
3662 4039 7.807977 TCTAGTCAAAGTTTTGAGCAGAATT 57.192 32.000 7.51 0.00 46.80 2.17
3705 4082 3.323691 AGGGTTAAGTTGGGCAAATGTTC 59.676 43.478 0.00 0.00 0.00 3.18
3806 4183 1.995376 AATGTCACCTTGGTGTTCCC 58.005 50.000 18.05 7.01 0.00 3.97
3959 4336 1.410004 TCGGACCTTATAGCCAGGTG 58.590 55.000 0.00 0.00 45.30 4.00
4059 4436 3.926058 AGGTGCCGGTATATTCAGTTT 57.074 42.857 1.90 0.00 0.00 2.66
4474 4855 6.743575 TTTCTTCTACTTTATCAGCAAGGC 57.256 37.500 0.00 0.00 0.00 4.35
4480 4861 2.170166 CTTTATCAGCAAGGCAACCCA 58.830 47.619 0.00 0.00 37.17 4.51
4485 4866 1.607467 AGCAAGGCAACCCATGTCC 60.607 57.895 0.00 0.00 32.58 4.02
4487 4868 1.187567 GCAAGGCAACCCATGTCCTT 61.188 55.000 0.00 0.00 42.54 3.36
4528 4909 2.814280 GCCATGGCACGTACTACTAT 57.186 50.000 32.08 0.00 41.49 2.12
4529 4910 3.107642 GCCATGGCACGTACTACTATT 57.892 47.619 32.08 0.00 41.49 1.73
4530 4911 3.057734 GCCATGGCACGTACTACTATTC 58.942 50.000 32.08 0.00 41.49 1.75
4531 4912 3.243771 GCCATGGCACGTACTACTATTCT 60.244 47.826 32.08 0.00 41.49 2.40
4532 4913 4.299155 CCATGGCACGTACTACTATTCTG 58.701 47.826 0.00 0.00 0.00 3.02
4533 4914 4.299155 CATGGCACGTACTACTATTCTGG 58.701 47.826 0.00 0.00 0.00 3.86
4537 4918 5.221130 GGCACGTACTACTATTCTGGATTC 58.779 45.833 0.00 0.00 0.00 2.52
4540 4921 6.363626 GCACGTACTACTATTCTGGATTCATG 59.636 42.308 0.00 0.00 0.00 3.07
4556 4938 8.010733 TGGATTCATGAGAATTATTTGTTCCC 57.989 34.615 0.00 0.00 44.30 3.97
4557 4939 7.141363 GGATTCATGAGAATTATTTGTTCCCG 58.859 38.462 0.00 0.00 44.30 5.14
4692 5074 1.407299 CCATCATCGAGCAAAGTCCCA 60.407 52.381 0.00 0.00 0.00 4.37
4707 5089 3.114616 CCAAGTGAGTGGAGCGCG 61.115 66.667 0.00 0.00 41.65 6.86
4742 5124 3.200593 CGACTCATGCTGCCTGGC 61.201 66.667 12.87 12.87 0.00 4.85
4794 5176 3.738982 TGTGGTTTCAGTCACGAATGAT 58.261 40.909 0.00 0.00 37.14 2.45
4800 5182 2.650608 TCAGTCACGAATGATATCGCG 58.349 47.619 0.00 0.00 46.51 5.87
4827 5209 1.003355 CTGTCCCAGCACCGAACAT 60.003 57.895 0.00 0.00 0.00 2.71
4861 5243 5.245751 TCAAAGGAGCATTTGAAAGCCATAA 59.754 36.000 7.73 0.00 44.14 1.90
4906 5288 2.917933 CAAAGACCCTGACAGACAACA 58.082 47.619 3.32 0.00 0.00 3.33
4946 5328 1.258445 ACGGTAAGTCTCTGGCCTGG 61.258 60.000 10.07 0.00 0.00 4.45
4948 5330 0.910088 GGTAAGTCTCTGGCCTGGGT 60.910 60.000 9.64 0.00 0.00 4.51
4950 5332 1.066071 GTAAGTCTCTGGCCTGGGTTC 60.066 57.143 9.64 4.56 0.00 3.62
4988 5371 3.129300 CGCCGCCTCCTAATCAGA 58.871 61.111 0.00 0.00 0.00 3.27
5032 5415 3.131223 TGCAGATGCTGAGGTTCTACTAC 59.869 47.826 6.35 0.00 42.66 2.73
5038 5421 3.054875 TGCTGAGGTTCTACTACTCGGTA 60.055 47.826 0.00 0.00 39.30 4.02
5039 5422 3.560896 GCTGAGGTTCTACTACTCGGTAG 59.439 52.174 8.87 8.87 41.43 3.18
5049 5432 4.180946 CTCGGTAGAGCGCGCAGT 62.181 66.667 35.10 22.06 37.73 4.40
5063 5446 3.129502 CAGTGGCAGCGGATGTGG 61.130 66.667 0.00 0.00 0.00 4.17
5124 5507 1.743772 CGCCGATGGTTCCTTGAGAAT 60.744 52.381 0.00 0.00 36.69 2.40
5127 5510 2.159099 CCGATGGTTCCTTGAGAATCGA 60.159 50.000 4.56 0.00 38.56 3.59
5161 5544 0.976073 TCAACCTCATCCCGGTCTCC 60.976 60.000 0.00 0.00 32.46 3.71
5194 5577 1.202687 TCCGCTTCCATGGATGATGTC 60.203 52.381 27.35 11.26 0.00 3.06
5197 5580 1.600957 GCTTCCATGGATGATGTCGTG 59.399 52.381 27.35 6.79 0.00 4.35
5209 5592 3.461982 GTCGTGACGTGCGAGCTG 61.462 66.667 4.40 0.00 39.14 4.24
5254 5640 1.603455 GCACCTTGGCCTGCACTTA 60.603 57.895 9.69 0.00 33.31 2.24
5255 5641 1.589716 GCACCTTGGCCTGCACTTAG 61.590 60.000 9.69 0.00 33.31 2.18
5257 5643 0.250901 ACCTTGGCCTGCACTTAGTG 60.251 55.000 8.18 8.18 36.51 2.74
5289 5676 0.752658 AAAGTCAAAACCTGGCCTGC 59.247 50.000 3.32 0.00 0.00 4.85
5291 5678 1.109323 AGTCAAAACCTGGCCTGCAC 61.109 55.000 3.32 0.00 0.00 4.57
5292 5679 1.076412 TCAAAACCTGGCCTGCACA 60.076 52.632 3.32 0.00 0.00 4.57
5305 5700 4.423022 GCACATGCACATGCGCCA 62.423 61.111 11.63 0.00 45.83 5.69
5323 5718 0.599466 CATGGTCGATCATGCTCGCT 60.599 55.000 24.78 0.00 38.16 4.93
5342 5741 1.402968 CTGGAATGCATCTTCCGTTGG 59.597 52.381 13.18 2.06 46.47 3.77
5362 5761 1.471684 GAAGATTGGAGGCAAGCAGTG 59.528 52.381 0.00 0.00 0.00 3.66
5370 5769 1.675641 GGCAAGCAGTGGGACGATT 60.676 57.895 0.00 0.00 0.00 3.34
5372 5771 0.955428 GCAAGCAGTGGGACGATTGA 60.955 55.000 0.00 0.00 0.00 2.57
5373 5772 1.742761 CAAGCAGTGGGACGATTGAT 58.257 50.000 0.00 0.00 0.00 2.57
5432 5841 1.812324 CGACCAGGTGCCTTGTTGTTA 60.812 52.381 0.00 0.00 0.00 2.41
5440 5849 1.515521 GCCTTGTTGTTAGCGGCAGT 61.516 55.000 1.45 0.00 40.41 4.40
5443 5852 2.604614 CCTTGTTGTTAGCGGCAGTTTC 60.605 50.000 1.45 0.00 0.00 2.78
5454 5863 1.802069 GGCAGTTTCCTCTCTGTGAC 58.198 55.000 0.00 0.00 34.57 3.67
5570 5980 0.602905 GGCTGTGGCTTGTAACGACT 60.603 55.000 0.00 0.00 38.73 4.18
5583 5993 1.842052 AACGACTTTGGTTGGTTGGT 58.158 45.000 0.00 0.00 0.00 3.67
5640 6058 3.177600 AGCACGCACGGCTTATTG 58.822 55.556 0.00 0.00 38.81 1.90
5754 6186 7.012044 GGCAAACCTTTTGATATACTCATACGT 59.988 37.037 2.80 0.00 32.72 3.57
5774 6436 4.343239 ACGTAACAATATACCCCCTCTGTC 59.657 45.833 0.00 0.00 0.00 3.51
5777 6439 2.021441 ACAATATACCCCCTCTGTCCCA 60.021 50.000 0.00 0.00 0.00 4.37
5782 6444 1.167033 ACCCCCTCTGTCCCAAAATT 58.833 50.000 0.00 0.00 0.00 1.82
5785 6447 2.225369 CCCCCTCTGTCCCAAAATTCTT 60.225 50.000 0.00 0.00 0.00 2.52
5786 6448 2.827921 CCCCTCTGTCCCAAAATTCTTG 59.172 50.000 0.00 0.00 0.00 3.02
5787 6449 3.500343 CCCTCTGTCCCAAAATTCTTGT 58.500 45.455 0.00 0.00 0.00 3.16
5788 6450 3.507622 CCCTCTGTCCCAAAATTCTTGTC 59.492 47.826 0.00 0.00 0.00 3.18
5789 6451 4.401925 CCTCTGTCCCAAAATTCTTGTCT 58.598 43.478 0.00 0.00 0.00 3.41
5791 6453 6.003950 CCTCTGTCCCAAAATTCTTGTCTTA 58.996 40.000 0.00 0.00 0.00 2.10
5792 6454 6.150140 CCTCTGTCCCAAAATTCTTGTCTTAG 59.850 42.308 0.00 0.00 0.00 2.18
5793 6455 6.837312 TCTGTCCCAAAATTCTTGTCTTAGA 58.163 36.000 0.00 0.00 0.00 2.10
5795 6457 7.944554 TCTGTCCCAAAATTCTTGTCTTAGATT 59.055 33.333 0.00 0.00 0.00 2.40
5796 6458 8.110860 TGTCCCAAAATTCTTGTCTTAGATTC 57.889 34.615 0.00 0.00 0.00 2.52
5797 6459 7.094805 TGTCCCAAAATTCTTGTCTTAGATTCG 60.095 37.037 0.00 0.00 0.00 3.34
5799 6461 7.119262 TCCCAAAATTCTTGTCTTAGATTCGTC 59.881 37.037 0.00 0.00 0.00 4.20
5813 6496 9.276590 TCTTAGATTCGTCTAAATACGGATGTA 57.723 33.333 0.00 0.00 41.14 2.29
5816 6499 8.107399 AGATTCGTCTAAATACGGATGTATCA 57.893 34.615 0.00 0.00 41.14 2.15
5819 6502 7.268199 TCGTCTAAATACGGATGTATCAAGT 57.732 36.000 0.00 0.00 40.42 3.16
5822 6505 7.113124 CGTCTAAATACGGATGTATCAAGTCAC 59.887 40.741 0.00 0.00 40.42 3.67
5823 6506 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
5831 6514 6.475727 CGGATGTATCAAGTCACGTTTTAGAT 59.524 38.462 0.00 0.00 0.00 1.98
5833 6516 8.665685 GGATGTATCAAGTCACGTTTTAGATTT 58.334 33.333 0.00 0.00 0.00 2.17
5834 6517 9.478019 GATGTATCAAGTCACGTTTTAGATTTG 57.522 33.333 3.39 3.39 34.11 2.32
5835 6518 8.373048 TGTATCAAGTCACGTTTTAGATTTGT 57.627 30.769 8.16 1.47 34.36 2.83
5837 6520 6.671614 TCAAGTCACGTTTTAGATTTGTGT 57.328 33.333 8.16 0.00 34.36 3.72
5867 6676 6.702897 AGAAAAGAAATACTAACATACGCGC 58.297 36.000 5.73 0.00 0.00 6.86
5870 6679 7.703298 AAAGAAATACTAACATACGCGCATA 57.297 32.000 5.73 0.00 0.00 3.14
5873 6682 8.390854 AGAAATACTAACATACGCGCATATAC 57.609 34.615 5.73 0.00 0.00 1.47
5875 6684 8.752766 AAATACTAACATACGCGCATATACTT 57.247 30.769 5.73 0.00 0.00 2.24
5876 6685 9.844790 AAATACTAACATACGCGCATATACTTA 57.155 29.630 5.73 0.59 0.00 2.24
5877 6686 8.832487 ATACTAACATACGCGCATATACTTAC 57.168 34.615 5.73 0.00 0.00 2.34
5878 6687 6.906659 ACTAACATACGCGCATATACTTACT 58.093 36.000 5.73 0.00 0.00 2.24
5879 6688 7.020010 ACTAACATACGCGCATATACTTACTC 58.980 38.462 5.73 0.00 0.00 2.59
5880 6689 4.730657 ACATACGCGCATATACTTACTCC 58.269 43.478 5.73 0.00 0.00 3.85
5881 6690 4.458295 ACATACGCGCATATACTTACTCCT 59.542 41.667 5.73 0.00 0.00 3.69
5884 6693 7.496920 ACATACGCGCATATACTTACTCCTATA 59.503 37.037 5.73 0.00 0.00 1.31
5885 6694 6.748333 ACGCGCATATACTTACTCCTATAA 57.252 37.500 5.73 0.00 0.00 0.98
5886 6695 7.149569 ACGCGCATATACTTACTCCTATAAA 57.850 36.000 5.73 0.00 0.00 1.40
5887 6696 7.025963 ACGCGCATATACTTACTCCTATAAAC 58.974 38.462 5.73 0.00 0.00 2.01
5889 6698 6.020837 GCGCATATACTTACTCCTATAAACGC 60.021 42.308 0.30 0.00 31.66 4.84
5890 6699 7.025365 CGCATATACTTACTCCTATAAACGCA 58.975 38.462 0.00 0.00 0.00 5.24
5891 6700 7.008086 CGCATATACTTACTCCTATAAACGCAC 59.992 40.741 0.00 0.00 0.00 5.34
5894 6703 5.395682 ACTTACTCCTATAAACGCACACA 57.604 39.130 0.00 0.00 0.00 3.72
5895 6704 5.974108 ACTTACTCCTATAAACGCACACAT 58.026 37.500 0.00 0.00 0.00 3.21
5896 6705 5.810587 ACTTACTCCTATAAACGCACACATG 59.189 40.000 0.00 0.00 0.00 3.21
5907 6716 2.555123 CACACATGCACACCCTACC 58.445 57.895 0.00 0.00 0.00 3.18
5909 6718 0.324943 ACACATGCACACCCTACCTC 59.675 55.000 0.00 0.00 0.00 3.85
5911 6720 1.831106 CACATGCACACCCTACCTCTA 59.169 52.381 0.00 0.00 0.00 2.43
5912 6721 2.435805 CACATGCACACCCTACCTCTAT 59.564 50.000 0.00 0.00 0.00 1.98
5913 6722 2.435805 ACATGCACACCCTACCTCTATG 59.564 50.000 0.00 0.00 0.00 2.23
5914 6723 1.496060 TGCACACCCTACCTCTATGG 58.504 55.000 0.00 0.00 42.93 2.74
5915 6724 0.759346 GCACACCCTACCTCTATGGG 59.241 60.000 0.00 0.00 46.07 4.00
5916 6725 0.759346 CACACCCTACCTCTATGGGC 59.241 60.000 0.00 0.00 44.56 5.36
5917 6726 0.341961 ACACCCTACCTCTATGGGCA 59.658 55.000 0.00 0.00 44.56 5.36
5918 6727 0.759346 CACCCTACCTCTATGGGCAC 59.241 60.000 0.00 0.00 44.56 5.01
5939 6748 1.378119 TCGAGAGACTAAGCCGGCA 60.378 57.895 31.54 7.98 33.31 5.69
5941 6750 0.952280 CGAGAGACTAAGCCGGCATA 59.048 55.000 31.54 21.29 0.00 3.14
5942 6751 1.542030 CGAGAGACTAAGCCGGCATAT 59.458 52.381 31.54 17.05 0.00 1.78
5943 6752 2.414824 CGAGAGACTAAGCCGGCATATC 60.415 54.545 31.54 19.70 0.00 1.63
5945 6754 3.169099 AGAGACTAAGCCGGCATATCAT 58.831 45.455 31.54 10.36 0.00 2.45
5946 6755 3.194542 AGAGACTAAGCCGGCATATCATC 59.805 47.826 31.54 18.93 0.00 2.92
5947 6756 3.169099 AGACTAAGCCGGCATATCATCT 58.831 45.455 31.54 19.69 0.00 2.90
5948 6757 3.580458 AGACTAAGCCGGCATATCATCTT 59.420 43.478 31.54 14.07 0.00 2.40
5949 6758 4.772624 AGACTAAGCCGGCATATCATCTTA 59.227 41.667 31.54 14.48 0.00 2.10
5950 6759 5.246203 AGACTAAGCCGGCATATCATCTTAA 59.754 40.000 31.54 0.00 0.00 1.85
5951 6760 5.482908 ACTAAGCCGGCATATCATCTTAAG 58.517 41.667 31.54 10.08 0.00 1.85
5952 6761 3.340814 AGCCGGCATATCATCTTAAGG 57.659 47.619 31.54 0.00 0.00 2.69
5953 6762 2.639839 AGCCGGCATATCATCTTAAGGT 59.360 45.455 31.54 0.00 0.00 3.50
5954 6763 3.073062 AGCCGGCATATCATCTTAAGGTT 59.927 43.478 31.54 0.00 0.00 3.50
5955 6764 3.821033 GCCGGCATATCATCTTAAGGTTT 59.179 43.478 24.80 0.00 0.00 3.27
5956 6765 4.278419 GCCGGCATATCATCTTAAGGTTTT 59.722 41.667 24.80 0.00 0.00 2.43
5957 6766 5.472137 GCCGGCATATCATCTTAAGGTTTTA 59.528 40.000 24.80 0.00 0.00 1.52
5958 6767 6.567891 GCCGGCATATCATCTTAAGGTTTTAC 60.568 42.308 24.80 0.00 0.00 2.01
5961 6770 7.042321 CGGCATATCATCTTAAGGTTTTACGAA 60.042 37.037 1.85 0.00 0.00 3.85
5962 6771 8.283291 GGCATATCATCTTAAGGTTTTACGAAG 58.717 37.037 1.85 0.00 0.00 3.79
5966 6775 7.647907 TCATCTTAAGGTTTTACGAAGTCAC 57.352 36.000 1.85 0.00 43.93 3.67
5967 6776 6.647895 TCATCTTAAGGTTTTACGAAGTCACC 59.352 38.462 1.85 0.00 43.93 4.02
5968 6777 4.984161 TCTTAAGGTTTTACGAAGTCACCG 59.016 41.667 1.85 0.00 43.93 4.94
5969 6778 2.896745 AGGTTTTACGAAGTCACCGT 57.103 45.000 0.00 0.00 43.93 4.83
5970 6779 4.320608 AAGGTTTTACGAAGTCACCGTA 57.679 40.909 0.00 0.00 43.93 4.02
5971 6780 4.320608 AGGTTTTACGAAGTCACCGTAA 57.679 40.909 0.00 0.00 46.58 3.18
5975 6784 2.336554 TACGAAGTCACCGTAAGTGC 57.663 50.000 0.00 0.00 46.81 4.40
5976 6785 0.319297 ACGAAGTCACCGTAAGTGCC 60.319 55.000 0.00 0.00 46.81 5.01
5977 6786 0.038526 CGAAGTCACCGTAAGTGCCT 60.039 55.000 0.00 0.00 46.81 4.75
5978 6787 1.604693 CGAAGTCACCGTAAGTGCCTT 60.605 52.381 0.00 0.00 46.98 4.35
5979 6788 1.798813 GAAGTCACCGTAAGTGCCTTG 59.201 52.381 0.00 0.00 44.45 3.61
5980 6789 0.756903 AGTCACCGTAAGTGCCTTGT 59.243 50.000 0.00 0.00 46.81 3.16
5981 6790 1.965643 AGTCACCGTAAGTGCCTTGTA 59.034 47.619 0.00 0.00 46.81 2.41
5983 6792 1.965643 TCACCGTAAGTGCCTTGTAGT 59.034 47.619 0.00 0.00 46.81 2.73
5984 6793 2.029649 TCACCGTAAGTGCCTTGTAGTC 60.030 50.000 0.00 0.00 46.81 2.59
5985 6794 1.068055 ACCGTAAGTGCCTTGTAGTCG 60.068 52.381 0.00 0.00 0.00 4.18
5986 6795 1.200716 CCGTAAGTGCCTTGTAGTCGA 59.799 52.381 0.00 0.00 0.00 4.20
5989 6798 1.726853 AAGTGCCTTGTAGTCGATGC 58.273 50.000 0.00 0.00 0.00 3.91
5990 6799 0.458543 AGTGCCTTGTAGTCGATGCG 60.459 55.000 0.00 0.00 0.00 4.73
5991 6800 0.457853 GTGCCTTGTAGTCGATGCGA 60.458 55.000 0.00 0.00 0.00 5.10
5993 6802 0.645868 GCCTTGTAGTCGATGCGAAC 59.354 55.000 0.00 0.00 37.72 3.95
5994 6803 0.914551 CCTTGTAGTCGATGCGAACG 59.085 55.000 0.00 0.00 37.72 3.95
5995 6804 0.294887 CTTGTAGTCGATGCGAACGC 59.705 55.000 12.33 12.33 37.72 4.84
5997 6806 1.226603 GTAGTCGATGCGAACGCCT 60.227 57.895 16.27 6.71 37.72 5.52
5998 6807 1.063649 TAGTCGATGCGAACGCCTC 59.936 57.895 16.27 14.38 37.72 4.70
5999 6808 2.332362 TAGTCGATGCGAACGCCTCC 62.332 60.000 16.27 4.99 37.72 4.30
6001 6810 2.956964 CGATGCGAACGCCTCCTC 60.957 66.667 16.27 7.26 41.09 3.71
6003 6812 4.162690 ATGCGAACGCCTCCTCCC 62.163 66.667 16.27 0.00 41.09 4.30
6006 6815 4.452733 CGAACGCCTCCTCCCACC 62.453 72.222 0.00 0.00 0.00 4.61
6007 6816 4.452733 GAACGCCTCCTCCCACCG 62.453 72.222 0.00 0.00 0.00 4.94
6010 6819 4.452733 CGCCTCCTCCCACCGAAC 62.453 72.222 0.00 0.00 0.00 3.95
6011 6820 4.452733 GCCTCCTCCCACCGAACG 62.453 72.222 0.00 0.00 0.00 3.95
6012 6821 2.995574 CCTCCTCCCACCGAACGT 60.996 66.667 0.00 0.00 0.00 3.99
6013 6822 2.261671 CTCCTCCCACCGAACGTG 59.738 66.667 0.00 0.00 42.62 4.49
6014 6823 3.934391 CTCCTCCCACCGAACGTGC 62.934 68.421 0.00 0.00 41.53 5.34
6015 6824 4.308458 CCTCCCACCGAACGTGCA 62.308 66.667 0.00 0.00 41.53 4.57
6016 6825 2.047274 CTCCCACCGAACGTGCAT 60.047 61.111 0.00 0.00 41.53 3.96
6017 6826 2.047655 TCCCACCGAACGTGCATC 60.048 61.111 0.00 0.00 41.53 3.91
6018 6827 3.487202 CCCACCGAACGTGCATCG 61.487 66.667 1.17 1.17 41.53 3.84
6031 6840 3.717712 GCATCGTCTAAATGCGAGC 57.282 52.632 0.00 0.00 40.05 5.03
6032 6841 0.930310 GCATCGTCTAAATGCGAGCA 59.070 50.000 0.00 0.00 40.05 4.26
6033 6842 1.332377 GCATCGTCTAAATGCGAGCAC 60.332 52.381 0.00 0.00 40.05 4.40
6034 6843 1.071894 CATCGTCTAAATGCGAGCACG 60.072 52.381 0.00 0.00 40.56 5.34
6035 6844 0.169451 TCGTCTAAATGCGAGCACGA 59.831 50.000 8.01 0.81 42.66 4.35
6036 6845 0.567968 CGTCTAAATGCGAGCACGAG 59.432 55.000 8.01 0.00 42.66 4.18
6037 6846 0.924090 GTCTAAATGCGAGCACGAGG 59.076 55.000 8.01 0.00 42.66 4.63
6038 6847 0.815095 TCTAAATGCGAGCACGAGGA 59.185 50.000 8.01 0.00 42.66 3.71
6039 6848 0.924090 CTAAATGCGAGCACGAGGAC 59.076 55.000 8.01 0.00 42.66 3.85
6040 6849 0.530744 TAAATGCGAGCACGAGGACT 59.469 50.000 8.01 0.00 42.66 3.85
6041 6850 0.320771 AAATGCGAGCACGAGGACTT 60.321 50.000 8.01 0.00 42.66 3.01
6042 6851 0.530744 AATGCGAGCACGAGGACTTA 59.469 50.000 8.01 0.00 42.66 2.24
6043 6852 0.530744 ATGCGAGCACGAGGACTTAA 59.469 50.000 8.01 0.00 42.66 1.85
6044 6853 0.315886 TGCGAGCACGAGGACTTAAA 59.684 50.000 8.01 0.00 42.66 1.52
6045 6854 0.714439 GCGAGCACGAGGACTTAAAC 59.286 55.000 8.01 0.00 42.66 2.01
6046 6855 1.669211 GCGAGCACGAGGACTTAAACT 60.669 52.381 8.01 0.00 42.66 2.66
6047 6856 2.251893 CGAGCACGAGGACTTAAACTC 58.748 52.381 0.00 0.00 42.66 3.01
6048 6857 2.095161 CGAGCACGAGGACTTAAACTCT 60.095 50.000 0.00 0.00 42.66 3.24
6049 6858 3.246619 GAGCACGAGGACTTAAACTCTG 58.753 50.000 0.00 0.00 0.00 3.35
6050 6859 2.028930 AGCACGAGGACTTAAACTCTGG 60.029 50.000 0.00 0.00 0.00 3.86
6051 6860 2.288886 GCACGAGGACTTAAACTCTGGT 60.289 50.000 0.00 0.00 0.00 4.00
6052 6861 3.318017 CACGAGGACTTAAACTCTGGTG 58.682 50.000 0.00 0.00 31.75 4.17
6053 6862 2.299297 ACGAGGACTTAAACTCTGGTGG 59.701 50.000 0.00 0.00 0.00 4.61
6054 6863 2.353803 CGAGGACTTAAACTCTGGTGGG 60.354 54.545 0.00 0.00 0.00 4.61
6055 6864 2.904434 GAGGACTTAAACTCTGGTGGGA 59.096 50.000 0.00 0.00 0.00 4.37
6056 6865 2.638363 AGGACTTAAACTCTGGTGGGAC 59.362 50.000 0.00 0.00 0.00 4.46
6057 6866 2.612221 GGACTTAAACTCTGGTGGGACG 60.612 54.545 0.00 0.00 0.00 4.79
6058 6867 1.346722 ACTTAAACTCTGGTGGGACGG 59.653 52.381 0.00 0.00 0.00 4.79
6059 6868 1.621814 CTTAAACTCTGGTGGGACGGA 59.378 52.381 0.00 0.00 0.00 4.69
6060 6869 1.263356 TAAACTCTGGTGGGACGGAG 58.737 55.000 0.00 0.00 46.86 4.63
6061 6870 0.471211 AAACTCTGGTGGGACGGAGA 60.471 55.000 8.87 0.00 44.83 3.71
6062 6871 0.252284 AACTCTGGTGGGACGGAGAT 60.252 55.000 8.87 0.00 44.83 2.75
6063 6872 0.629596 ACTCTGGTGGGACGGAGATA 59.370 55.000 8.87 0.00 44.83 1.98
6064 6873 1.033574 CTCTGGTGGGACGGAGATAC 58.966 60.000 0.00 0.00 44.83 2.24
6065 6874 0.396695 TCTGGTGGGACGGAGATACC 60.397 60.000 0.00 0.00 0.00 2.73
6066 6875 0.686441 CTGGTGGGACGGAGATACCA 60.686 60.000 0.00 0.00 38.98 3.25
6068 6877 1.821258 GTGGGACGGAGATACCACC 59.179 63.158 0.00 0.00 45.85 4.61
6073 6882 3.929002 CGGAGATACCACCGTCCA 58.071 61.111 0.00 0.00 43.53 4.02
6074 6883 1.436336 CGGAGATACCACCGTCCAC 59.564 63.158 0.00 0.00 43.53 4.02
6075 6884 1.821258 GGAGATACCACCGTCCACC 59.179 63.158 0.00 0.00 38.79 4.61
6076 6885 0.686769 GGAGATACCACCGTCCACCT 60.687 60.000 0.00 0.00 38.79 4.00
6077 6886 1.410648 GGAGATACCACCGTCCACCTA 60.411 57.143 0.00 0.00 38.79 3.08
6078 6887 2.381911 GAGATACCACCGTCCACCTAA 58.618 52.381 0.00 0.00 0.00 2.69
6079 6888 2.100418 GAGATACCACCGTCCACCTAAC 59.900 54.545 0.00 0.00 0.00 2.34
6080 6889 1.137675 GATACCACCGTCCACCTAACC 59.862 57.143 0.00 0.00 0.00 2.85
6081 6890 0.178938 TACCACCGTCCACCTAACCA 60.179 55.000 0.00 0.00 0.00 3.67
6082 6891 0.838987 ACCACCGTCCACCTAACCAT 60.839 55.000 0.00 0.00 0.00 3.55
6083 6892 0.107848 CCACCGTCCACCTAACCATC 60.108 60.000 0.00 0.00 0.00 3.51
6084 6893 0.107848 CACCGTCCACCTAACCATCC 60.108 60.000 0.00 0.00 0.00 3.51
6085 6894 0.545787 ACCGTCCACCTAACCATCCA 60.546 55.000 0.00 0.00 0.00 3.41
6086 6895 0.616371 CCGTCCACCTAACCATCCAA 59.384 55.000 0.00 0.00 0.00 3.53
6087 6896 1.211949 CCGTCCACCTAACCATCCAAT 59.788 52.381 0.00 0.00 0.00 3.16
6088 6897 2.561569 CGTCCACCTAACCATCCAATC 58.438 52.381 0.00 0.00 0.00 2.67
6089 6898 2.093181 CGTCCACCTAACCATCCAATCA 60.093 50.000 0.00 0.00 0.00 2.57
6090 6899 3.279434 GTCCACCTAACCATCCAATCAC 58.721 50.000 0.00 0.00 0.00 3.06
6091 6900 2.916269 TCCACCTAACCATCCAATCACA 59.084 45.455 0.00 0.00 0.00 3.58
6092 6901 3.054434 TCCACCTAACCATCCAATCACAG 60.054 47.826 0.00 0.00 0.00 3.66
6093 6902 3.282021 CACCTAACCATCCAATCACAGG 58.718 50.000 0.00 0.00 0.00 4.00
6094 6903 2.919602 ACCTAACCATCCAATCACAGGT 59.080 45.455 0.00 0.00 0.00 4.00
6095 6904 3.333680 ACCTAACCATCCAATCACAGGTT 59.666 43.478 0.00 0.00 44.23 3.50
6096 6905 3.696051 CCTAACCATCCAATCACAGGTTG 59.304 47.826 0.00 0.00 42.19 3.77
6097 6906 2.220653 ACCATCCAATCACAGGTTGG 57.779 50.000 2.61 2.61 46.76 3.77
6098 6907 2.220653 CCATCCAATCACAGGTTGGT 57.779 50.000 8.75 0.00 45.05 3.67
6099 6908 2.528564 CCATCCAATCACAGGTTGGTT 58.471 47.619 8.75 0.00 45.05 3.67
6100 6909 2.493278 CCATCCAATCACAGGTTGGTTC 59.507 50.000 8.75 0.00 45.05 3.62
6101 6910 1.890876 TCCAATCACAGGTTGGTTCG 58.109 50.000 8.75 0.00 45.05 3.95
6102 6911 0.240945 CCAATCACAGGTTGGTTCGC 59.759 55.000 0.85 0.00 40.94 4.70
6103 6912 0.110238 CAATCACAGGTTGGTTCGCG 60.110 55.000 0.00 0.00 0.00 5.87
6104 6913 0.250124 AATCACAGGTTGGTTCGCGA 60.250 50.000 3.71 3.71 0.00 5.87
6105 6914 0.670546 ATCACAGGTTGGTTCGCGAG 60.671 55.000 9.59 0.00 0.00 5.03
6106 6915 2.030562 ACAGGTTGGTTCGCGAGG 59.969 61.111 9.59 0.00 0.00 4.63
6107 6916 2.342279 CAGGTTGGTTCGCGAGGA 59.658 61.111 9.59 0.00 0.00 3.71
6108 6917 2.027625 CAGGTTGGTTCGCGAGGAC 61.028 63.158 9.59 5.51 39.54 3.85
6109 6918 2.029964 GGTTGGTTCGCGAGGACA 59.970 61.111 9.59 7.16 43.15 4.02
6110 6919 2.315386 GGTTGGTTCGCGAGGACAC 61.315 63.158 9.59 4.21 43.15 3.67
6111 6920 2.355363 TTGGTTCGCGAGGACACG 60.355 61.111 9.59 0.00 43.15 4.49
6112 6921 2.847754 TTGGTTCGCGAGGACACGA 61.848 57.895 9.59 0.00 43.15 4.35
6119 6928 1.066114 CGCGAGGACACGAGAAAGTC 61.066 60.000 0.00 0.00 35.31 3.01
6137 6946 2.480555 GTCGCCACGCCTTGATTG 59.519 61.111 0.00 0.00 0.00 2.67
6140 6949 0.886938 TCGCCACGCCTTGATTGAAA 60.887 50.000 0.00 0.00 0.00 2.69
6142 6951 1.402720 CGCCACGCCTTGATTGAAAAT 60.403 47.619 0.00 0.00 0.00 1.82
6178 7026 5.796935 CAGCTGTGCTTGATGTTGTAATAAC 59.203 40.000 5.25 0.00 36.40 1.89
6179 7027 5.473162 AGCTGTGCTTGATGTTGTAATAACA 59.527 36.000 0.00 0.00 33.89 2.41
6230 7109 3.933048 ATCCAGCAGCTGTGTGCCC 62.933 63.158 21.26 0.00 45.20 5.36
6247 7126 1.261238 CCCGTGCTTCTTCTCTCCCT 61.261 60.000 0.00 0.00 0.00 4.20
6248 7127 0.174617 CCGTGCTTCTTCTCTCCCTC 59.825 60.000 0.00 0.00 0.00 4.30
6249 7128 0.179150 CGTGCTTCTTCTCTCCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
6259 7138 2.515991 CTCCCTCGCTCTCGCTCT 60.516 66.667 0.00 0.00 35.26 4.09
6276 7155 2.936202 CTCTCTCCTCCTTCCTCTCTG 58.064 57.143 0.00 0.00 0.00 3.35
6277 7156 1.064017 TCTCTCCTCCTTCCTCTCTGC 60.064 57.143 0.00 0.00 0.00 4.26
6279 7158 1.002274 TCCTCCTTCCTCTCTGCCC 59.998 63.158 0.00 0.00 0.00 5.36
6281 7160 2.041265 TCCTTCCTCTCTGCCCCC 59.959 66.667 0.00 0.00 0.00 5.40
6282 7161 3.474570 CCTTCCTCTCTGCCCCCG 61.475 72.222 0.00 0.00 0.00 5.73
6283 7162 2.364317 CTTCCTCTCTGCCCCCGA 60.364 66.667 0.00 0.00 0.00 5.14
6285 7164 3.239627 TTCCTCTCTGCCCCCGACT 62.240 63.158 0.00 0.00 0.00 4.18
6286 7165 3.151022 CCTCTCTGCCCCCGACTC 61.151 72.222 0.00 0.00 0.00 3.36
6288 7167 4.779733 TCTCTGCCCCCGACTCCC 62.780 72.222 0.00 0.00 0.00 4.30
6338 7225 1.846439 CTCTGACCTCTCTCCCTCTCT 59.154 57.143 0.00 0.00 0.00 3.10
6339 7226 1.843851 TCTGACCTCTCTCCCTCTCTC 59.156 57.143 0.00 0.00 0.00 3.20
6340 7227 0.923358 TGACCTCTCTCCCTCTCTCC 59.077 60.000 0.00 0.00 0.00 3.71
6390 7285 1.821753 AGCATCTCGATCCTTATCCGG 59.178 52.381 0.00 0.00 0.00 5.14
6392 7287 0.811915 ATCTCGATCCTTATCCGGCG 59.188 55.000 0.00 0.00 0.00 6.46
6393 7288 0.250597 TCTCGATCCTTATCCGGCGA 60.251 55.000 9.30 0.00 0.00 5.54
6394 7289 0.811915 CTCGATCCTTATCCGGCGAT 59.188 55.000 9.30 2.42 0.00 4.58
6397 7292 0.809385 GATCCTTATCCGGCGATCGA 59.191 55.000 21.57 0.00 42.43 3.59
6398 7293 0.526662 ATCCTTATCCGGCGATCGAC 59.473 55.000 21.57 17.00 42.43 4.20
6399 7294 1.080705 CCTTATCCGGCGATCGACC 60.081 63.158 21.57 18.09 42.43 4.79
6400 7295 1.080705 CTTATCCGGCGATCGACCC 60.081 63.158 21.57 10.69 42.43 4.46
6401 7296 1.524863 CTTATCCGGCGATCGACCCT 61.525 60.000 21.57 4.40 42.43 4.34
6402 7297 1.521450 TTATCCGGCGATCGACCCTC 61.521 60.000 21.57 0.00 42.43 4.30
6412 7307 1.749334 ATCGACCCTCCGGCAATCTC 61.749 60.000 0.00 0.00 0.00 2.75
6422 7317 3.654020 GCAATCTCCATCCGCCGC 61.654 66.667 0.00 0.00 0.00 6.53
6472 7367 3.980136 GATCGATCGATCCTCGTCC 57.020 57.895 36.97 18.31 43.71 4.79
6473 7368 0.448593 GATCGATCGATCCTCGTCCC 59.551 60.000 36.97 17.65 43.71 4.46
6474 7369 0.961358 ATCGATCGATCCTCGTCCCC 60.961 60.000 24.60 0.00 41.35 4.81
6510 7405 2.427575 CGGCGTCTGGATCGATCG 60.428 66.667 18.81 9.36 0.00 3.69
6511 7406 2.893449 CGGCGTCTGGATCGATCGA 61.893 63.158 21.86 21.86 0.00 3.59
6512 7407 1.581954 GGCGTCTGGATCGATCGAT 59.418 57.895 29.76 29.76 37.59 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 2.534533 GGGTTCCCTTGTCCCCCT 60.535 66.667 0.00 0.00 35.52 4.79
156 164 3.987868 CCTTCTTTCATCGTTCGTTCTCA 59.012 43.478 0.00 0.00 0.00 3.27
171 179 3.946907 CGGCGTCGTTCCTTCTTT 58.053 55.556 0.00 0.00 0.00 2.52
377 400 0.909623 GCTAGGACTTGGCCCTAACA 59.090 55.000 0.00 0.00 35.98 2.41
399 422 6.134535 ACCACCTCTAAATTAATCACCACA 57.865 37.500 0.00 0.00 0.00 4.17
581 612 8.761689 ACATCTATAACCAAGGAAATTGCAAAT 58.238 29.630 1.71 0.00 37.60 2.32
583 614 7.716799 ACATCTATAACCAAGGAAATTGCAA 57.283 32.000 0.00 0.00 37.60 4.08
584 615 7.615365 AGAACATCTATAACCAAGGAAATTGCA 59.385 33.333 0.00 0.00 37.60 4.08
585 616 8.000780 AGAACATCTATAACCAAGGAAATTGC 57.999 34.615 0.00 0.00 37.60 3.56
588 619 7.615365 TGCAAGAACATCTATAACCAAGGAAAT 59.385 33.333 0.00 0.00 0.00 2.17
590 621 6.480763 TGCAAGAACATCTATAACCAAGGAA 58.519 36.000 0.00 0.00 0.00 3.36
606 637 0.521291 TACCGCAGCAATGCAAGAAC 59.479 50.000 8.35 0.00 34.41 3.01
640 671 4.202111 GGCCATTTCTTGTACAACACAGTT 60.202 41.667 3.59 0.00 38.72 3.16
642 673 3.569701 AGGCCATTTCTTGTACAACACAG 59.430 43.478 5.01 0.00 38.72 3.66
701 760 1.153706 GCCGCAGCAATTGAGCATT 60.154 52.632 19.14 0.00 39.53 3.56
702 761 2.050350 AGCCGCAGCAATTGAGCAT 61.050 52.632 19.14 5.78 43.56 3.79
712 771 0.168128 ATCGTTTTAACAGCCGCAGC 59.832 50.000 0.00 0.00 40.32 5.25
902 1110 2.997315 TCCCTCCTGCCAGTGACG 60.997 66.667 0.00 0.00 0.00 4.35
915 1123 4.101448 GCTGACATGCCGGTCCCT 62.101 66.667 1.90 0.00 36.97 4.20
964 1172 2.415491 GCCAGGCGTGATTTTTACTTCC 60.415 50.000 8.24 0.00 0.00 3.46
1002 1210 2.996621 GTCACTTCGTCAAATCCTCCTG 59.003 50.000 0.00 0.00 0.00 3.86
1003 1211 2.352814 CGTCACTTCGTCAAATCCTCCT 60.353 50.000 0.00 0.00 0.00 3.69
1004 1212 1.993370 CGTCACTTCGTCAAATCCTCC 59.007 52.381 0.00 0.00 0.00 4.30
1005 1213 2.662156 GTCGTCACTTCGTCAAATCCTC 59.338 50.000 0.00 0.00 0.00 3.71
1006 1214 2.296471 AGTCGTCACTTCGTCAAATCCT 59.704 45.455 0.00 0.00 0.00 3.24
1007 1215 2.662156 GAGTCGTCACTTCGTCAAATCC 59.338 50.000 0.00 0.00 30.63 3.01
1008 1216 3.566523 AGAGTCGTCACTTCGTCAAATC 58.433 45.455 0.00 0.00 30.63 2.17
1009 1217 3.253677 AGAGAGTCGTCACTTCGTCAAAT 59.746 43.478 0.00 0.00 30.63 2.32
1010 1218 2.617308 AGAGAGTCGTCACTTCGTCAAA 59.383 45.455 0.00 0.00 30.63 2.69
1017 1225 3.502979 GGTTAGTCAGAGAGTCGTCACTT 59.497 47.826 0.00 0.00 30.63 3.16
1194 1402 1.310933 ACGCCGACGAGATTACTGGT 61.311 55.000 0.00 0.00 43.93 4.00
1214 1434 1.736032 CGAGGTTTAGCAAGGACGGAG 60.736 57.143 0.00 0.00 0.00 4.63
1363 1590 0.315886 TACACGGCGCAGAGAAGAAA 59.684 50.000 16.26 0.00 0.00 2.52
1367 1594 1.803334 AAATTACACGGCGCAGAGAA 58.197 45.000 16.26 5.28 0.00 2.87
1392 1619 0.669619 CACAGCCACACAGCAATCAA 59.330 50.000 0.00 0.00 34.23 2.57
1514 1755 4.380233 GGAACAAAATGCTGAGGACAGATG 60.380 45.833 0.00 0.00 46.03 2.90
1528 1769 5.068591 GCTATAACATTCGGGGGAACAAAAT 59.931 40.000 0.00 0.00 0.00 1.82
1556 1802 7.148407 ACGAAGTCACATCAAATTCATCCTAAC 60.148 37.037 0.00 0.00 29.74 2.34
1559 1805 5.248640 ACGAAGTCACATCAAATTCATCCT 58.751 37.500 0.00 0.00 29.74 3.24
1634 1880 3.002583 TCCACCTCATCGCCAGCA 61.003 61.111 0.00 0.00 0.00 4.41
1637 1883 2.038813 TCCTCCACCTCATCGCCA 59.961 61.111 0.00 0.00 0.00 5.69
1640 1886 0.826715 ACATGTCCTCCACCTCATCG 59.173 55.000 0.00 0.00 0.00 3.84
1643 1889 1.545428 GCAAACATGTCCTCCACCTCA 60.545 52.381 0.00 0.00 0.00 3.86
1860 2109 2.617276 CCAGGCAATCTGCTGAAAGAGA 60.617 50.000 0.00 0.00 44.28 3.10
1868 2117 1.302285 CCAGACCAGGCAATCTGCT 59.698 57.895 7.04 0.00 44.28 4.24
1896 2145 2.825086 AAAGTGACAACGTGAGCAAC 57.175 45.000 0.00 0.00 0.00 4.17
1920 2170 9.921637 CTTCTTATCTGTAGGGATAAAGATCAC 57.078 37.037 0.00 0.00 37.61 3.06
2130 2403 5.978322 GGAGTTAGGAACGTACTCATTCATC 59.022 44.000 15.35 0.00 42.49 2.92
2290 2567 2.863740 TGCAATAGCGATGTACTTTCCG 59.136 45.455 0.00 0.00 46.23 4.30
2291 2568 3.871594 ACTGCAATAGCGATGTACTTTCC 59.128 43.478 0.00 0.00 46.23 3.13
2542 2877 5.357032 CCCTCCGTTTTTATTTACTCTGCAT 59.643 40.000 0.00 0.00 0.00 3.96
2560 2895 6.709397 AGAAAAACTAAGTTTTACTCCCTCCG 59.291 38.462 0.00 0.00 43.67 4.63
2582 2917 5.425217 TCCATCATACAACCAAGAGCTAGAA 59.575 40.000 0.00 0.00 0.00 2.10
2708 3058 5.454045 GGAGACTCCCATTTCTATTCCTGAC 60.454 48.000 10.74 0.00 0.00 3.51
2748 3098 2.887152 GAGAGGAACAAAACTGTGGCAT 59.113 45.455 0.00 0.00 0.00 4.40
2757 3107 4.630644 AGAGATGCAGAGAGGAACAAAA 57.369 40.909 0.00 0.00 0.00 2.44
2959 3309 6.963796 AGTGTCATGATGTTTTCAGACTTTC 58.036 36.000 0.00 0.00 37.89 2.62
2962 3312 5.824624 ACAAGTGTCATGATGTTTTCAGACT 59.175 36.000 0.00 0.00 37.89 3.24
2964 3314 6.698008 AACAAGTGTCATGATGTTTTCAGA 57.302 33.333 6.60 0.00 37.89 3.27
3008 3358 0.109597 GCGGAAAGTGGTCATGCTTG 60.110 55.000 0.00 0.00 0.00 4.01
3011 3361 2.480555 CGCGGAAAGTGGTCATGC 59.519 61.111 0.00 0.00 0.00 4.06
3094 3444 3.820467 TGTTTGCTGGTAGGAGAACATTG 59.180 43.478 0.00 0.00 0.00 2.82
3323 3673 6.292381 GCAATAGCTCCATTTACTTCGTACAG 60.292 42.308 0.00 0.00 37.91 2.74
3355 3705 1.893137 GTCTGTTTGGTTTCCCCATCC 59.107 52.381 0.00 0.00 44.74 3.51
3360 3710 2.661718 TCAAGGTCTGTTTGGTTTCCC 58.338 47.619 0.00 0.00 0.00 3.97
3366 3716 3.636300 TGTTGGATTCAAGGTCTGTTTGG 59.364 43.478 0.00 0.00 32.92 3.28
3548 3898 3.827302 ACATAAGATACTCCTACCAGGCG 59.173 47.826 0.00 0.00 34.61 5.52
3616 3993 2.239402 TCTGCCTTCATGCCTATTGACA 59.761 45.455 0.00 0.00 0.00 3.58
3662 4039 1.205655 CCGTCCTTGAGCTGATTCTCA 59.794 52.381 0.00 0.00 40.99 3.27
3705 4082 8.768955 GCTTGAAATGTAGAGGTGAACATATAG 58.231 37.037 0.00 0.00 35.30 1.31
3806 4183 3.389687 AATTCAATTGTACTGCGCGAG 57.610 42.857 12.10 7.21 0.00 5.03
3852 4229 5.104360 ACACTAGAACCTCCACATATGCATT 60.104 40.000 3.54 0.00 0.00 3.56
3959 4336 5.357878 TGGCATTATCATGGAGTGTTCTTTC 59.642 40.000 0.00 0.00 0.00 2.62
4028 4405 1.815421 CGGCACCTAATCTGCGCTT 60.815 57.895 9.73 0.00 35.31 4.68
4037 4414 5.120399 CAAACTGAATATACCGGCACCTAA 58.880 41.667 0.00 0.00 0.00 2.69
4041 4418 2.680841 TGCAAACTGAATATACCGGCAC 59.319 45.455 0.00 0.00 0.00 5.01
4059 4436 6.822667 AATCATATGTGAACACTCTTTGCA 57.177 33.333 1.90 0.00 38.01 4.08
4218 4595 4.424626 CTTCACTATTTCGCAGTGCTAGA 58.575 43.478 14.33 0.43 42.58 2.43
4460 4837 2.170166 TGGGTTGCCTTGCTGATAAAG 58.830 47.619 0.00 0.00 0.00 1.85
4473 4854 3.050089 TCCAAAGGACATGGGTTGC 57.950 52.632 0.00 0.00 38.54 4.17
4485 4866 5.766150 TCACCAACTATGTTTGTCCAAAG 57.234 39.130 0.00 0.00 0.00 2.77
4487 4868 4.022416 GCATCACCAACTATGTTTGTCCAA 60.022 41.667 0.00 0.00 0.00 3.53
4515 4896 5.828747 TGAATCCAGAATAGTAGTACGTGC 58.171 41.667 0.00 0.00 0.00 5.34
4516 4897 7.649057 TCATGAATCCAGAATAGTAGTACGTG 58.351 38.462 0.00 0.00 0.00 4.49
4517 4898 7.720074 TCTCATGAATCCAGAATAGTAGTACGT 59.280 37.037 0.00 0.00 0.00 3.57
4518 4899 8.100508 TCTCATGAATCCAGAATAGTAGTACG 57.899 38.462 0.00 0.00 0.00 3.67
4529 4910 8.906867 GGAACAAATAATTCTCATGAATCCAGA 58.093 33.333 0.00 0.00 41.62 3.86
4530 4911 8.139989 GGGAACAAATAATTCTCATGAATCCAG 58.860 37.037 0.00 0.00 41.62 3.86
4531 4912 7.201812 CGGGAACAAATAATTCTCATGAATCCA 60.202 37.037 0.00 0.00 41.62 3.41
4532 4913 7.141363 CGGGAACAAATAATTCTCATGAATCC 58.859 38.462 0.00 0.00 41.62 3.01
4533 4914 7.707104 ACGGGAACAAATAATTCTCATGAATC 58.293 34.615 0.00 0.00 41.62 2.52
4537 4918 8.532977 AAAAACGGGAACAAATAATTCTCATG 57.467 30.769 0.00 0.00 0.00 3.07
4540 4921 8.079809 TCTGAAAAACGGGAACAAATAATTCTC 58.920 33.333 0.00 0.00 0.00 2.87
4545 4926 5.067936 TGCTCTGAAAAACGGGAACAAATAA 59.932 36.000 0.00 0.00 0.00 1.40
4556 4938 2.290367 TCCACACATGCTCTGAAAAACG 59.710 45.455 0.00 0.00 0.00 3.60
4557 4939 3.565482 TCTCCACACATGCTCTGAAAAAC 59.435 43.478 0.00 0.00 0.00 2.43
4692 5074 3.693128 TATTGCGCGCTCCACTCACTT 62.693 52.381 33.29 6.81 0.00 3.16
4794 5176 2.223735 GGGACAGATCTTTGACGCGATA 60.224 50.000 15.93 0.00 0.00 2.92
4827 5209 1.276622 GCTCCTTTGAGGGGTGTAGA 58.723 55.000 0.00 0.00 38.44 2.59
4861 5243 1.756538 CTGGAAAGCACAAAACCTGGT 59.243 47.619 0.00 0.00 0.00 4.00
4906 5288 2.932234 CGTCGTCCCAGGTGAAGCT 61.932 63.158 0.00 0.00 0.00 3.74
4948 5330 3.361977 GCGGCTGCGAAAAGGGAA 61.362 61.111 0.00 0.00 0.00 3.97
4971 5353 0.034059 ATTCTGATTAGGAGGCGGCG 59.966 55.000 0.51 0.51 0.00 6.46
4972 5354 2.262423 AATTCTGATTAGGAGGCGGC 57.738 50.000 0.00 0.00 0.00 6.53
5032 5415 4.180946 ACTGCGCGCTCTACCGAG 62.181 66.667 33.29 21.11 40.35 4.63
5047 5430 3.640407 ACCACATCCGCTGCCACT 61.640 61.111 0.00 0.00 0.00 4.00
5049 5432 3.899981 GACACCACATCCGCTGCCA 62.900 63.158 0.00 0.00 0.00 4.92
5059 5442 4.164087 AACGCACGGGACACCACA 62.164 61.111 0.00 0.00 36.13 4.17
5061 5444 3.509137 GAGAACGCACGGGACACCA 62.509 63.158 0.00 0.00 36.13 4.17
5063 5446 2.737376 GGAGAACGCACGGGACAC 60.737 66.667 0.00 0.00 0.00 3.67
5103 5486 1.815421 CTCAAGGAACCATCGGCGG 60.815 63.158 7.21 0.00 0.00 6.13
5104 5487 0.391130 TTCTCAAGGAACCATCGGCG 60.391 55.000 0.00 0.00 0.00 6.46
5116 5499 1.878522 CGCCCCGTCGATTCTCAAG 60.879 63.158 0.00 0.00 0.00 3.02
5137 5520 0.036164 CCGGGATGAGGTTGAACACA 59.964 55.000 0.00 0.00 0.00 3.72
5140 5523 0.613777 AGACCGGGATGAGGTTGAAC 59.386 55.000 6.32 0.00 43.01 3.18
5179 5562 2.738321 CGTCACGACATCATCCATGGAA 60.738 50.000 20.67 2.92 36.72 3.53
5182 5565 1.589779 CACGTCACGACATCATCCATG 59.410 52.381 2.91 0.00 38.64 3.66
5194 5577 3.946305 TAGCAGCTCGCACGTCACG 62.946 63.158 0.00 0.00 46.13 4.35
5197 5580 3.251043 GCTAGCAGCTCGCACGTC 61.251 66.667 13.93 0.00 46.13 4.34
5209 5592 1.673400 GCTTAAGCCTTGGAAGCTAGC 59.327 52.381 17.00 6.62 41.89 3.42
5237 5620 0.250901 ACTAAGTGCAGGCCAAGGTG 60.251 55.000 5.01 0.00 0.00 4.00
5254 5640 1.425448 ACTTTAGCTTTGGAGGCCACT 59.575 47.619 5.01 0.00 30.78 4.00
5255 5641 1.813178 GACTTTAGCTTTGGAGGCCAC 59.187 52.381 5.01 0.00 30.78 5.01
5257 5643 2.200373 TGACTTTAGCTTTGGAGGCC 57.800 50.000 0.00 0.00 0.00 5.19
5260 5646 5.507985 CCAGGTTTTGACTTTAGCTTTGGAG 60.508 44.000 0.00 0.00 0.00 3.86
5291 5678 2.279186 CCATGGCGCATGTGCATG 60.279 61.111 30.73 27.02 39.94 4.06
5292 5679 2.756691 ACCATGGCGCATGTGCAT 60.757 55.556 30.73 19.24 39.94 3.96
5302 5697 1.563435 CGAGCATGATCGACCATGGC 61.563 60.000 28.37 13.11 45.56 4.40
5305 5700 0.599466 CAGCGAGCATGATCGACCAT 60.599 55.000 35.26 15.26 45.56 3.55
5342 5741 1.471684 CACTGCTTGCCTCCAATCTTC 59.528 52.381 0.00 0.00 0.00 2.87
5362 5761 1.439679 GGCGGATAATCAATCGTCCC 58.560 55.000 0.00 0.00 35.21 4.46
5370 5769 3.923864 AGCGCCGGCGGATAATCA 61.924 61.111 45.81 0.00 46.35 2.57
5410 5819 4.643387 ACAAGGCACCTGGTCGGC 62.643 66.667 12.62 12.62 35.61 5.54
5412 5821 1.101049 AACAACAAGGCACCTGGTCG 61.101 55.000 0.00 0.00 28.36 4.79
5432 5841 1.294780 CAGAGAGGAAACTGCCGCT 59.705 57.895 0.00 0.00 44.43 5.52
5440 5849 1.699730 TCACCGTCACAGAGAGGAAA 58.300 50.000 0.00 0.00 34.03 3.13
5443 5852 2.751166 AAATCACCGTCACAGAGAGG 57.249 50.000 0.00 0.00 0.00 3.69
5506 5915 8.029782 TGTGCTTTGTGGTATAGTAGGAATAT 57.970 34.615 0.00 0.00 0.00 1.28
5508 5917 6.308015 TGTGCTTTGTGGTATAGTAGGAAT 57.692 37.500 0.00 0.00 0.00 3.01
5509 5918 5.748670 TGTGCTTTGTGGTATAGTAGGAA 57.251 39.130 0.00 0.00 0.00 3.36
5510 5919 5.950544 ATGTGCTTTGTGGTATAGTAGGA 57.049 39.130 0.00 0.00 0.00 2.94
5511 5920 5.296780 CCAATGTGCTTTGTGGTATAGTAGG 59.703 44.000 0.00 0.00 0.00 3.18
5512 5921 6.112734 TCCAATGTGCTTTGTGGTATAGTAG 58.887 40.000 0.00 0.00 32.68 2.57
5516 5925 5.589855 CAGATCCAATGTGCTTTGTGGTATA 59.410 40.000 0.00 0.00 32.68 1.47
5517 5926 4.400251 CAGATCCAATGTGCTTTGTGGTAT 59.600 41.667 0.00 0.00 32.68 2.73
5528 5937 0.819582 GGCCAACCAGATCCAATGTG 59.180 55.000 0.00 0.00 35.26 3.21
5570 5980 0.827368 GAGCCAACCAACCAACCAAA 59.173 50.000 0.00 0.00 0.00 3.28
5583 5993 1.614051 CCATGCCACTAACTGAGCCAA 60.614 52.381 0.00 0.00 0.00 4.52
5661 6079 8.921789 AGGCGCTCCAGATTTTGTATAACAAAA 61.922 37.037 17.44 17.44 46.46 2.44
5662 6080 5.392595 GGCGCTCCAGATTTTGTATAACAAA 60.393 40.000 7.64 1.21 45.37 2.83
5663 6081 4.095782 GGCGCTCCAGATTTTGTATAACAA 59.904 41.667 7.64 0.00 36.11 2.83
5666 6084 4.150897 AGGCGCTCCAGATTTTGTATAA 57.849 40.909 7.64 0.00 33.74 0.98
5667 6085 3.838244 AGGCGCTCCAGATTTTGTATA 57.162 42.857 7.64 0.00 33.74 1.47
5669 6087 2.419574 GGTAGGCGCTCCAGATTTTGTA 60.420 50.000 7.64 0.00 33.74 2.41
5712 6144 4.500716 GGTTTGCCTTCTCCATTTCGAAAA 60.501 41.667 15.66 0.00 0.00 2.29
5716 6148 2.162681 AGGTTTGCCTTCTCCATTTCG 58.837 47.619 0.00 0.00 44.18 3.46
5745 6177 6.080009 AGGGGGTATATTGTTACGTATGAGT 58.920 40.000 0.00 0.00 0.00 3.41
5746 6178 6.436532 AGAGGGGGTATATTGTTACGTATGAG 59.563 42.308 0.00 0.00 0.00 2.90
5752 6184 4.262335 GGACAGAGGGGGTATATTGTTACG 60.262 50.000 0.00 0.00 0.00 3.18
5754 6186 4.237018 GGGACAGAGGGGGTATATTGTTA 58.763 47.826 0.00 0.00 0.00 2.41
5756 6188 2.021441 TGGGACAGAGGGGGTATATTGT 60.021 50.000 0.00 0.00 0.00 2.71
5757 6189 2.701551 TGGGACAGAGGGGGTATATTG 58.298 52.381 0.00 0.00 0.00 1.90
5765 6427 2.827921 CAAGAATTTTGGGACAGAGGGG 59.172 50.000 0.00 0.00 42.39 4.79
5767 6429 4.401925 AGACAAGAATTTTGGGACAGAGG 58.598 43.478 5.68 0.00 42.39 3.69
5774 6436 7.119846 AGACGAATCTAAGACAAGAATTTTGGG 59.880 37.037 0.00 0.00 31.46 4.12
5782 6444 8.127327 CCGTATTTAGACGAATCTAAGACAAGA 58.873 37.037 0.00 0.00 45.93 3.02
5785 6447 7.558161 TCCGTATTTAGACGAATCTAAGACA 57.442 36.000 0.00 0.00 45.93 3.41
5786 6448 8.074972 ACATCCGTATTTAGACGAATCTAAGAC 58.925 37.037 0.00 0.00 45.93 3.01
5787 6449 8.162878 ACATCCGTATTTAGACGAATCTAAGA 57.837 34.615 0.00 0.00 45.93 2.10
5791 6453 8.107399 TGATACATCCGTATTTAGACGAATCT 57.893 34.615 0.00 0.00 45.82 2.40
5792 6454 8.738199 TTGATACATCCGTATTTAGACGAATC 57.262 34.615 0.00 0.00 45.82 2.52
5793 6455 8.358148 ACTTGATACATCCGTATTTAGACGAAT 58.642 33.333 0.00 0.00 45.82 3.34
5795 6457 7.012610 TGACTTGATACATCCGTATTTAGACGA 59.987 37.037 0.00 0.00 45.82 4.20
5796 6458 7.113124 GTGACTTGATACATCCGTATTTAGACG 59.887 40.741 0.00 0.00 38.48 4.18
5797 6459 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
5799 6461 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
5802 6464 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
5813 6496 7.259290 ACACAAATCTAAAACGTGACTTGAT 57.741 32.000 2.37 0.00 0.00 2.57
5815 6498 8.829514 TTTACACAAATCTAAAACGTGACTTG 57.170 30.769 0.00 0.00 0.00 3.16
5816 6499 8.885722 TCTTTACACAAATCTAAAACGTGACTT 58.114 29.630 0.00 0.00 0.00 3.01
5819 6502 9.100554 TCTTCTTTACACAAATCTAAAACGTGA 57.899 29.630 0.00 0.00 0.00 4.35
5855 6664 6.468319 GGAGTAAGTATATGCGCGTATGTTAG 59.532 42.308 28.29 0.00 0.00 2.34
5856 6665 6.149973 AGGAGTAAGTATATGCGCGTATGTTA 59.850 38.462 28.29 21.56 0.00 2.41
5858 6667 4.458295 AGGAGTAAGTATATGCGCGTATGT 59.542 41.667 28.29 15.87 0.00 2.29
5864 6673 6.020837 GCGTTTATAGGAGTAAGTATATGCGC 60.021 42.308 0.00 0.00 32.64 6.09
5865 6674 7.008086 GTGCGTTTATAGGAGTAAGTATATGCG 59.992 40.741 0.00 0.00 0.00 4.73
5867 6676 9.125906 GTGTGCGTTTATAGGAGTAAGTATATG 57.874 37.037 0.00 0.00 0.00 1.78
5870 6679 7.104043 TGTGTGCGTTTATAGGAGTAAGTAT 57.896 36.000 0.00 0.00 0.00 2.12
5873 6682 5.276868 GCATGTGTGCGTTTATAGGAGTAAG 60.277 44.000 0.00 0.00 42.28 2.34
5875 6684 4.116961 GCATGTGTGCGTTTATAGGAGTA 58.883 43.478 0.00 0.00 42.28 2.59
5876 6685 2.936498 GCATGTGTGCGTTTATAGGAGT 59.064 45.455 0.00 0.00 42.28 3.85
5877 6686 3.592381 GCATGTGTGCGTTTATAGGAG 57.408 47.619 0.00 0.00 42.28 3.69
5889 6698 0.036732 AGGTAGGGTGTGCATGTGTG 59.963 55.000 0.00 0.00 0.00 3.82
5890 6699 0.324943 GAGGTAGGGTGTGCATGTGT 59.675 55.000 0.00 0.00 0.00 3.72
5891 6700 0.615331 AGAGGTAGGGTGTGCATGTG 59.385 55.000 0.00 0.00 0.00 3.21
5894 6703 2.050144 CCATAGAGGTAGGGTGTGCAT 58.950 52.381 0.00 0.00 0.00 3.96
5895 6704 1.496060 CCATAGAGGTAGGGTGTGCA 58.504 55.000 0.00 0.00 0.00 4.57
5896 6705 0.759346 CCCATAGAGGTAGGGTGTGC 59.241 60.000 0.00 0.00 37.81 4.57
5897 6706 0.759346 GCCCATAGAGGTAGGGTGTG 59.241 60.000 0.00 0.00 44.69 3.82
5899 6708 0.759346 GTGCCCATAGAGGTAGGGTG 59.241 60.000 0.00 0.00 44.69 4.61
5901 6710 1.472662 CGGTGCCCATAGAGGTAGGG 61.473 65.000 0.00 0.00 45.68 3.53
5902 6711 0.759436 ACGGTGCCCATAGAGGTAGG 60.759 60.000 0.00 0.00 34.66 3.18
5903 6712 0.674534 GACGGTGCCCATAGAGGTAG 59.325 60.000 0.00 0.00 34.66 3.18
5904 6713 1.105167 CGACGGTGCCCATAGAGGTA 61.105 60.000 0.00 0.00 34.66 3.08
5905 6714 2.423898 CGACGGTGCCCATAGAGGT 61.424 63.158 0.00 0.00 34.66 3.85
5906 6715 2.076622 CTCGACGGTGCCCATAGAGG 62.077 65.000 0.00 0.00 37.03 3.69
5907 6716 1.101635 TCTCGACGGTGCCCATAGAG 61.102 60.000 0.00 0.00 0.00 2.43
5909 6718 1.101635 TCTCTCGACGGTGCCCATAG 61.102 60.000 0.00 0.00 0.00 2.23
5911 6720 2.362503 TCTCTCGACGGTGCCCAT 60.363 61.111 0.00 0.00 0.00 4.00
5912 6721 2.473891 TAGTCTCTCGACGGTGCCCA 62.474 60.000 0.00 0.00 44.93 5.36
5913 6722 1.310933 TTAGTCTCTCGACGGTGCCC 61.311 60.000 0.00 0.00 44.93 5.36
5914 6723 0.099082 CTTAGTCTCTCGACGGTGCC 59.901 60.000 0.00 0.00 44.93 5.01
5915 6724 0.523757 GCTTAGTCTCTCGACGGTGC 60.524 60.000 0.00 0.00 44.93 5.01
5916 6725 0.099082 GGCTTAGTCTCTCGACGGTG 59.901 60.000 0.00 0.00 44.93 4.94
5917 6726 1.367599 CGGCTTAGTCTCTCGACGGT 61.368 60.000 0.00 0.00 44.93 4.83
5918 6727 1.352404 CGGCTTAGTCTCTCGACGG 59.648 63.158 0.00 0.00 44.93 4.79
5919 6728 1.352404 CCGGCTTAGTCTCTCGACG 59.648 63.158 0.00 0.00 44.93 5.12
5920 6729 1.064458 GCCGGCTTAGTCTCTCGAC 59.936 63.158 22.15 0.00 40.54 4.20
5921 6730 0.752009 ATGCCGGCTTAGTCTCTCGA 60.752 55.000 29.70 1.81 0.00 4.04
5922 6731 0.952280 TATGCCGGCTTAGTCTCTCG 59.048 55.000 29.70 0.00 0.00 4.04
5924 6733 2.598565 TGATATGCCGGCTTAGTCTCT 58.401 47.619 29.70 10.12 0.00 3.10
5925 6734 3.194542 AGATGATATGCCGGCTTAGTCTC 59.805 47.826 29.70 19.28 0.00 3.36
5927 6736 3.601443 AGATGATATGCCGGCTTAGTC 57.399 47.619 29.70 21.82 0.00 2.59
5928 6737 5.482908 CTTAAGATGATATGCCGGCTTAGT 58.517 41.667 29.70 15.20 0.00 2.24
5929 6738 4.872691 CCTTAAGATGATATGCCGGCTTAG 59.127 45.833 29.70 11.66 0.00 2.18
5930 6739 4.286032 ACCTTAAGATGATATGCCGGCTTA 59.714 41.667 29.70 25.95 0.00 3.09
5931 6740 3.073062 ACCTTAAGATGATATGCCGGCTT 59.927 43.478 29.70 24.47 0.00 4.35
5932 6741 2.639839 ACCTTAAGATGATATGCCGGCT 59.360 45.455 29.70 15.76 0.00 5.52
5933 6742 3.059352 ACCTTAAGATGATATGCCGGC 57.941 47.619 22.73 22.73 0.00 6.13
5934 6743 6.347402 CGTAAAACCTTAAGATGATATGCCGG 60.347 42.308 3.36 0.00 0.00 6.13
5935 6744 6.422701 TCGTAAAACCTTAAGATGATATGCCG 59.577 38.462 3.36 0.00 0.00 5.69
5941 6750 7.333672 GGTGACTTCGTAAAACCTTAAGATGAT 59.666 37.037 3.36 0.00 30.39 2.45
5942 6751 6.647895 GGTGACTTCGTAAAACCTTAAGATGA 59.352 38.462 3.36 0.00 30.39 2.92
5943 6752 6.400727 CGGTGACTTCGTAAAACCTTAAGATG 60.401 42.308 3.36 0.00 31.38 2.90
5945 6754 4.984161 CGGTGACTTCGTAAAACCTTAAGA 59.016 41.667 3.36 0.00 0.00 2.10
5946 6755 4.746611 ACGGTGACTTCGTAAAACCTTAAG 59.253 41.667 0.00 0.00 39.22 1.85
5947 6756 4.692228 ACGGTGACTTCGTAAAACCTTAA 58.308 39.130 0.00 0.00 39.22 1.85
5948 6757 4.320608 ACGGTGACTTCGTAAAACCTTA 57.679 40.909 0.00 0.00 39.22 2.69
5949 6758 3.183793 ACGGTGACTTCGTAAAACCTT 57.816 42.857 0.00 0.00 39.22 3.50
5950 6759 2.896745 ACGGTGACTTCGTAAAACCT 57.103 45.000 0.00 0.00 39.22 3.50
5969 6778 6.400943 TTCGCATCGACTACAAGGCACTTA 62.401 45.833 0.00 0.00 41.14 2.24
5970 6779 5.717507 TTCGCATCGACTACAAGGCACTT 62.718 47.826 0.00 0.00 43.19 3.16
5971 6780 4.290855 TTCGCATCGACTACAAGGCACT 62.291 50.000 0.00 0.00 35.95 4.40
5972 6781 0.457853 TCGCATCGACTACAAGGCAC 60.458 55.000 0.00 0.00 0.00 5.01
5974 6783 0.645868 GTTCGCATCGACTACAAGGC 59.354 55.000 0.00 0.00 34.89 4.35
5975 6784 0.914551 CGTTCGCATCGACTACAAGG 59.085 55.000 0.00 0.00 34.89 3.61
5976 6785 0.294887 GCGTTCGCATCGACTACAAG 59.705 55.000 12.33 0.00 34.89 3.16
5977 6786 1.074319 GGCGTTCGCATCGACTACAA 61.074 55.000 18.46 0.00 34.89 2.41
5978 6787 1.515519 GGCGTTCGCATCGACTACA 60.516 57.895 18.46 0.00 34.89 2.74
5979 6788 1.226603 AGGCGTTCGCATCGACTAC 60.227 57.895 18.46 0.00 45.23 2.73
5980 6789 3.193757 AGGCGTTCGCATCGACTA 58.806 55.556 18.46 0.00 45.23 2.59
5983 6792 3.411418 GAGGAGGCGTTCGCATCGA 62.411 63.158 21.62 0.00 42.04 3.59
5984 6793 2.956964 GAGGAGGCGTTCGCATCG 60.957 66.667 21.62 0.00 42.04 3.84
5985 6794 2.586357 GGAGGAGGCGTTCGCATC 60.586 66.667 20.66 20.66 40.64 3.91
5986 6795 4.162690 GGGAGGAGGCGTTCGCAT 62.163 66.667 18.46 11.93 0.00 4.73
5989 6798 4.452733 GGTGGGAGGAGGCGTTCG 62.453 72.222 0.00 0.00 0.00 3.95
5990 6799 4.452733 CGGTGGGAGGAGGCGTTC 62.453 72.222 0.00 0.00 0.00 3.95
5993 6802 4.452733 GTTCGGTGGGAGGAGGCG 62.453 72.222 0.00 0.00 0.00 5.52
5994 6803 4.452733 CGTTCGGTGGGAGGAGGC 62.453 72.222 0.00 0.00 0.00 4.70
5995 6804 2.995574 ACGTTCGGTGGGAGGAGG 60.996 66.667 0.00 0.00 0.00 4.30
6013 6822 0.930310 TGCTCGCATTTAGACGATGC 59.070 50.000 0.00 0.00 44.90 3.91
6014 6823 1.071894 CGTGCTCGCATTTAGACGATG 60.072 52.381 0.00 0.00 37.72 3.84
6015 6824 1.200483 CGTGCTCGCATTTAGACGAT 58.800 50.000 0.00 0.00 37.72 3.73
6016 6825 0.169451 TCGTGCTCGCATTTAGACGA 59.831 50.000 2.69 0.00 36.96 4.20
6017 6826 0.567968 CTCGTGCTCGCATTTAGACG 59.432 55.000 2.69 0.00 36.96 4.18
6018 6827 0.924090 CCTCGTGCTCGCATTTAGAC 59.076 55.000 2.69 0.00 36.96 2.59
6019 6828 0.815095 TCCTCGTGCTCGCATTTAGA 59.185 50.000 2.69 0.00 36.96 2.10
6020 6829 0.924090 GTCCTCGTGCTCGCATTTAG 59.076 55.000 2.69 0.00 36.96 1.85
6021 6830 0.530744 AGTCCTCGTGCTCGCATTTA 59.469 50.000 2.69 0.00 36.96 1.40
6022 6831 0.320771 AAGTCCTCGTGCTCGCATTT 60.321 50.000 2.69 0.00 36.96 2.32
6023 6832 0.530744 TAAGTCCTCGTGCTCGCATT 59.469 50.000 2.69 0.00 36.96 3.56
6024 6833 0.530744 TTAAGTCCTCGTGCTCGCAT 59.469 50.000 2.69 0.00 36.96 4.73
6025 6834 0.315886 TTTAAGTCCTCGTGCTCGCA 59.684 50.000 2.69 0.00 36.96 5.10
6026 6835 0.714439 GTTTAAGTCCTCGTGCTCGC 59.286 55.000 2.69 0.00 36.96 5.03
6027 6836 2.095161 AGAGTTTAAGTCCTCGTGCTCG 60.095 50.000 0.81 0.81 38.55 5.03
6028 6837 3.246619 CAGAGTTTAAGTCCTCGTGCTC 58.753 50.000 0.00 0.00 32.88 4.26
6029 6838 2.028930 CCAGAGTTTAAGTCCTCGTGCT 60.029 50.000 0.00 0.00 32.88 4.40
6030 6839 2.288886 ACCAGAGTTTAAGTCCTCGTGC 60.289 50.000 0.00 0.00 32.88 5.34
6031 6840 3.318017 CACCAGAGTTTAAGTCCTCGTG 58.682 50.000 0.00 0.00 32.88 4.35
6032 6841 2.299297 CCACCAGAGTTTAAGTCCTCGT 59.701 50.000 0.00 0.00 32.88 4.18
6033 6842 2.353803 CCCACCAGAGTTTAAGTCCTCG 60.354 54.545 0.00 0.00 32.88 4.63
6034 6843 2.904434 TCCCACCAGAGTTTAAGTCCTC 59.096 50.000 0.00 0.00 0.00 3.71
6035 6844 2.638363 GTCCCACCAGAGTTTAAGTCCT 59.362 50.000 0.00 0.00 0.00 3.85
6036 6845 2.612221 CGTCCCACCAGAGTTTAAGTCC 60.612 54.545 0.00 0.00 0.00 3.85
6037 6846 2.612221 CCGTCCCACCAGAGTTTAAGTC 60.612 54.545 0.00 0.00 0.00 3.01
6038 6847 1.346722 CCGTCCCACCAGAGTTTAAGT 59.653 52.381 0.00 0.00 0.00 2.24
6039 6848 1.621814 TCCGTCCCACCAGAGTTTAAG 59.378 52.381 0.00 0.00 0.00 1.85
6040 6849 1.621814 CTCCGTCCCACCAGAGTTTAA 59.378 52.381 0.00 0.00 0.00 1.52
6041 6850 1.203087 TCTCCGTCCCACCAGAGTTTA 60.203 52.381 0.00 0.00 0.00 2.01
6042 6851 0.471211 TCTCCGTCCCACCAGAGTTT 60.471 55.000 0.00 0.00 0.00 2.66
6043 6852 0.252284 ATCTCCGTCCCACCAGAGTT 60.252 55.000 0.00 0.00 0.00 3.01
6044 6853 0.629596 TATCTCCGTCCCACCAGAGT 59.370 55.000 0.00 0.00 0.00 3.24
6045 6854 1.033574 GTATCTCCGTCCCACCAGAG 58.966 60.000 0.00 0.00 0.00 3.35
6046 6855 0.396695 GGTATCTCCGTCCCACCAGA 60.397 60.000 0.00 0.00 0.00 3.86
6047 6856 0.686441 TGGTATCTCCGTCCCACCAG 60.686 60.000 0.00 0.00 39.52 4.00
6048 6857 0.974010 GTGGTATCTCCGTCCCACCA 60.974 60.000 0.00 0.00 41.20 4.17
6049 6858 1.821258 GTGGTATCTCCGTCCCACC 59.179 63.158 0.00 0.00 41.20 4.61
6050 6859 1.821258 GGTGGTATCTCCGTCCCAC 59.179 63.158 0.00 0.00 45.29 4.61
6051 6860 1.755395 CGGTGGTATCTCCGTCCCA 60.755 63.158 8.34 0.00 42.94 4.37
6052 6861 3.126528 CGGTGGTATCTCCGTCCC 58.873 66.667 8.34 0.00 42.94 4.46
6057 6866 0.686769 AGGTGGACGGTGGTATCTCC 60.687 60.000 0.00 0.00 0.00 3.71
6058 6867 2.062971 TAGGTGGACGGTGGTATCTC 57.937 55.000 0.00 0.00 0.00 2.75
6059 6868 2.105766 GTTAGGTGGACGGTGGTATCT 58.894 52.381 0.00 0.00 0.00 1.98
6060 6869 1.137675 GGTTAGGTGGACGGTGGTATC 59.862 57.143 0.00 0.00 0.00 2.24
6061 6870 1.197812 GGTTAGGTGGACGGTGGTAT 58.802 55.000 0.00 0.00 0.00 2.73
6062 6871 0.178938 TGGTTAGGTGGACGGTGGTA 60.179 55.000 0.00 0.00 0.00 3.25
6063 6872 0.838987 ATGGTTAGGTGGACGGTGGT 60.839 55.000 0.00 0.00 0.00 4.16
6064 6873 0.107848 GATGGTTAGGTGGACGGTGG 60.108 60.000 0.00 0.00 0.00 4.61
6065 6874 0.107848 GGATGGTTAGGTGGACGGTG 60.108 60.000 0.00 0.00 0.00 4.94
6066 6875 0.545787 TGGATGGTTAGGTGGACGGT 60.546 55.000 0.00 0.00 0.00 4.83
6067 6876 0.616371 TTGGATGGTTAGGTGGACGG 59.384 55.000 0.00 0.00 0.00 4.79
6068 6877 2.093181 TGATTGGATGGTTAGGTGGACG 60.093 50.000 0.00 0.00 0.00 4.79
6069 6878 3.279434 GTGATTGGATGGTTAGGTGGAC 58.721 50.000 0.00 0.00 0.00 4.02
6070 6879 2.916269 TGTGATTGGATGGTTAGGTGGA 59.084 45.455 0.00 0.00 0.00 4.02
6071 6880 3.282021 CTGTGATTGGATGGTTAGGTGG 58.718 50.000 0.00 0.00 0.00 4.61
6072 6881 3.282021 CCTGTGATTGGATGGTTAGGTG 58.718 50.000 0.00 0.00 0.00 4.00
6073 6882 2.919602 ACCTGTGATTGGATGGTTAGGT 59.080 45.455 0.00 0.00 32.74 3.08
6074 6883 3.652057 ACCTGTGATTGGATGGTTAGG 57.348 47.619 0.00 0.00 0.00 2.69
6075 6884 4.970662 CAACCTGTGATTGGATGGTTAG 57.029 45.455 0.00 0.00 38.76 2.34
6084 6893 0.110238 CGCGAACCAACCTGTGATTG 60.110 55.000 0.00 0.00 0.00 2.67
6085 6894 0.250124 TCGCGAACCAACCTGTGATT 60.250 50.000 6.20 0.00 0.00 2.57
6086 6895 0.670546 CTCGCGAACCAACCTGTGAT 60.671 55.000 11.33 0.00 0.00 3.06
6087 6896 1.300620 CTCGCGAACCAACCTGTGA 60.301 57.895 11.33 0.00 0.00 3.58
6088 6897 2.317609 CCTCGCGAACCAACCTGTG 61.318 63.158 11.33 0.00 0.00 3.66
6089 6898 2.030562 CCTCGCGAACCAACCTGT 59.969 61.111 11.33 0.00 0.00 4.00
6090 6899 2.027625 GTCCTCGCGAACCAACCTG 61.028 63.158 11.33 0.00 0.00 4.00
6091 6900 2.342648 GTCCTCGCGAACCAACCT 59.657 61.111 11.33 0.00 0.00 3.50
6092 6901 2.029964 TGTCCTCGCGAACCAACC 59.970 61.111 11.33 0.00 0.00 3.77
6093 6902 3.241177 GTGTCCTCGCGAACCAAC 58.759 61.111 11.33 6.57 0.00 3.77
6101 6910 1.066114 CGACTTTCTCGTGTCCTCGC 61.066 60.000 0.00 0.00 37.64 5.03
6102 6911 3.002990 CGACTTTCTCGTGTCCTCG 57.997 57.895 0.00 0.00 37.64 4.63
6124 6933 8.472683 TTTATTTATTTTCAATCAAGGCGTGG 57.527 30.769 0.00 0.00 0.00 4.94
6187 7040 9.671279 ATGCCTTTTCCTTTTCCTTTATTATTG 57.329 29.630 0.00 0.00 0.00 1.90
6193 7046 5.151454 TGGATGCCTTTTCCTTTTCCTTTA 58.849 37.500 0.00 0.00 34.17 1.85
6194 7047 3.973305 TGGATGCCTTTTCCTTTTCCTTT 59.027 39.130 0.00 0.00 34.17 3.11
6197 7050 2.354103 GCTGGATGCCTTTTCCTTTTCC 60.354 50.000 0.00 0.00 34.17 3.13
6203 7056 0.969409 AGCTGCTGGATGCCTTTTCC 60.969 55.000 0.00 0.00 42.00 3.13
6230 7109 0.179150 CGAGGGAGAGAAGAAGCACG 60.179 60.000 0.00 0.00 0.00 5.34
6259 7138 0.032615 GGCAGAGAGGAAGGAGGAGA 60.033 60.000 0.00 0.00 0.00 3.71
6282 7161 2.198304 ATTTGGCTGGGTCGGGAGTC 62.198 60.000 0.00 0.00 0.00 3.36
6283 7162 1.789576 AATTTGGCTGGGTCGGGAGT 61.790 55.000 0.00 0.00 0.00 3.85
6285 7164 0.699399 TAAATTTGGCTGGGTCGGGA 59.301 50.000 0.00 0.00 0.00 5.14
6286 7165 1.102978 CTAAATTTGGCTGGGTCGGG 58.897 55.000 0.00 0.00 0.00 5.14
6288 7167 0.455815 GGCTAAATTTGGCTGGGTCG 59.544 55.000 23.54 0.00 34.79 4.79
6294 7181 2.490509 GGTGTAACGGCTAAATTTGGCT 59.509 45.455 23.54 8.93 38.12 4.75
6338 7225 0.037232 TGTGTGACGTGTGTTGTGGA 60.037 50.000 0.00 0.00 0.00 4.02
6339 7226 0.373370 CTGTGTGACGTGTGTTGTGG 59.627 55.000 0.00 0.00 0.00 4.17
6340 7227 1.060553 GTCTGTGTGACGTGTGTTGTG 59.939 52.381 0.00 0.00 35.81 3.33
6400 7295 1.301244 CGGATGGAGATTGCCGGAG 60.301 63.158 5.05 0.00 40.08 4.63
6401 7296 2.821685 CGGATGGAGATTGCCGGA 59.178 61.111 5.05 0.00 40.08 5.14
6402 7297 2.974698 GCGGATGGAGATTGCCGG 60.975 66.667 0.00 0.00 43.73 6.13
6403 7298 2.974698 GGCGGATGGAGATTGCCG 60.975 66.667 0.00 0.00 46.14 5.69
6404 7299 2.974698 CGGCGGATGGAGATTGCC 60.975 66.667 0.00 0.00 42.29 4.52
6405 7300 3.654020 GCGGCGGATGGAGATTGC 61.654 66.667 9.78 0.00 0.00 3.56
6406 7301 2.974698 GGCGGCGGATGGAGATTG 60.975 66.667 9.78 0.00 0.00 2.67
6407 7302 4.256180 GGGCGGCGGATGGAGATT 62.256 66.667 9.78 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.