Multiple sequence alignment - TraesCS6D01G362400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G362400 chr6D 100.000 5556 0 0 1 5556 452950619 452956174 0.000000e+00 10261.0
1 TraesCS6D01G362400 chr6A 91.070 2206 128 38 2365 4525 599033081 599035262 0.000000e+00 2918.0
2 TraesCS6D01G362400 chr6A 89.260 689 45 13 1 671 599030715 599031392 0.000000e+00 835.0
3 TraesCS6D01G362400 chr6A 92.871 505 23 5 1829 2328 599032579 599033075 0.000000e+00 721.0
4 TraesCS6D01G362400 chr6A 91.509 424 19 5 801 1213 599031505 599031922 8.080000e-158 568.0
5 TraesCS6D01G362400 chr6A 79.899 791 57 39 4664 5437 599035476 599036181 2.330000e-133 486.0
6 TraesCS6D01G362400 chr6A 77.400 500 44 37 1391 1823 599031888 599032385 3.350000e-57 233.0
7 TraesCS6D01G362400 chr6A 94.444 72 4 0 5460 5531 549015555 549015626 1.640000e-20 111.0
8 TraesCS6D01G362400 chr6A 100.000 29 0 0 4797 4825 605049451 605049479 3.000000e-03 54.7
9 TraesCS6D01G362400 chr6B 90.673 1426 79 24 1 1378 688202554 688203973 0.000000e+00 1847.0
10 TraesCS6D01G362400 chr6B 90.000 1390 62 17 2365 3729 688204801 688206138 0.000000e+00 1725.0
11 TraesCS6D01G362400 chr6B 87.653 1061 67 36 3725 4731 688206251 688207301 0.000000e+00 1175.0
12 TraesCS6D01G362400 chr6B 81.709 667 51 25 4797 5433 688207310 688207935 1.800000e-134 490.0
13 TraesCS6D01G362400 chr6B 86.364 418 25 8 1914 2331 688204413 688204798 1.430000e-115 427.0
14 TraesCS6D01G362400 chr6B 79.116 249 19 12 1580 1827 688203871 688204087 2.090000e-29 141.0
15 TraesCS6D01G362400 chr4D 82.857 140 16 4 1978 2117 153219530 153219661 9.780000e-23 119.0
16 TraesCS6D01G362400 chr4A 97.143 70 2 0 5460 5529 222555883 222555814 9.780000e-23 119.0
17 TraesCS6D01G362400 chr4A 91.026 78 6 1 5460 5537 635878658 635878734 2.740000e-18 104.0
18 TraesCS6D01G362400 chr1D 95.775 71 3 0 5460 5530 492948061 492948131 1.260000e-21 115.0
19 TraesCS6D01G362400 chr1D 94.203 69 4 0 5460 5528 212378678 212378746 7.610000e-19 106.0
20 TraesCS6D01G362400 chr3D 94.521 73 4 0 5460 5532 239075459 239075387 4.550000e-21 113.0
21 TraesCS6D01G362400 chr7D 82.090 134 16 4 1984 2117 86729979 86729854 2.120000e-19 108.0
22 TraesCS6D01G362400 chr7D 81.720 93 14 3 4797 4886 412012425 412012333 2.150000e-09 75.0
23 TraesCS6D01G362400 chr7B 82.090 134 16 4 1984 2117 423412577 423412452 2.120000e-19 108.0
24 TraesCS6D01G362400 chr7B 94.203 69 4 0 5460 5528 461952842 461952910 7.610000e-19 106.0
25 TraesCS6D01G362400 chr7B 80.645 93 14 4 4797 4886 32464175 32464084 9.990000e-08 69.4
26 TraesCS6D01G362400 chr7B 100.000 30 0 0 908 937 32348391 32348420 7.780000e-04 56.5
27 TraesCS6D01G362400 chr2B 81.429 140 18 4 1978 2117 736926470 736926601 2.120000e-19 108.0
28 TraesCS6D01G362400 chr2B 80.597 134 18 5 1984 2117 553062892 553062767 4.580000e-16 97.1
29 TraesCS6D01G362400 chr3A 94.203 69 4 0 5460 5528 661044312 661044380 7.610000e-19 106.0
30 TraesCS6D01G362400 chr3A 90.000 50 3 2 4797 4844 683533211 683533162 4.650000e-06 63.9
31 TraesCS6D01G362400 chr3A 97.222 36 1 0 4798 4833 747521196 747521161 1.670000e-05 62.1
32 TraesCS6D01G362400 chr2A 89.011 91 3 6 5440 5530 79496687 79496604 7.610000e-19 106.0
33 TraesCS6D01G362400 chr5B 80.597 134 18 4 1984 2117 655979810 655979685 4.580000e-16 97.1
34 TraesCS6D01G362400 chr4B 80.597 134 18 4 1984 2117 609766615 609766490 4.580000e-16 97.1
35 TraesCS6D01G362400 chr3B 100.000 30 0 0 4797 4826 98009455 98009484 7.780000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G362400 chr6D 452950619 452956174 5555 False 10261.000000 10261 100.000000 1 5556 1 chr6D.!!$F1 5555
1 TraesCS6D01G362400 chr6A 599030715 599036181 5466 False 960.166667 2918 87.001500 1 5437 6 chr6A.!!$F3 5436
2 TraesCS6D01G362400 chr6B 688202554 688207935 5381 False 967.500000 1847 85.919167 1 5433 6 chr6B.!!$F1 5432

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 347 0.526662 CACCTCCGTCACCTCTACAC 59.473 60.0 0.0 0.0 0.00 2.90 F
1333 1430 0.107508 CAGGATAGCTGTGTGGTGGG 60.108 60.0 0.0 0.0 0.00 4.61 F
2361 2796 0.037605 GTGGTTCGTGGAGTCGGAAT 60.038 55.0 0.0 0.0 0.00 3.01 F
2362 2797 0.037697 TGGTTCGTGGAGTCGGAATG 60.038 55.0 0.0 0.0 0.00 2.67 F
2363 2798 0.245539 GGTTCGTGGAGTCGGAATGA 59.754 55.0 0.0 0.0 0.00 2.57 F
4086 4706 0.337428 ATGCTTCCTTTCCCAGCCAT 59.663 50.0 0.0 0.0 32.11 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1523 1633 0.036765 TGTAGCACGTTGATGGGGTC 60.037 55.000 0.00 0.0 0.00 4.46 R
3077 3553 0.033796 ACCCCATCAACTGCTCATGG 60.034 55.000 0.00 0.0 37.42 3.66 R
3749 4347 0.105778 TGCACATTGACTCGACACCA 59.894 50.000 0.00 0.0 0.00 4.17 R
4069 4682 1.064389 AGTATGGCTGGGAAAGGAAGC 60.064 52.381 0.00 0.0 36.17 3.86 R
4282 4902 1.554617 TCGGATTTCAGCCATGACTCA 59.445 47.619 0.00 0.0 34.35 3.41 R
4964 5699 0.516877 GAAGCAGCGCACATGTTGTA 59.483 50.000 11.47 0.0 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.141287 CTCAGGGTAAACATTCACCACAA 58.859 43.478 0.00 0.00 36.48 3.33
59 60 5.105392 ACATTCACCACAAAATGACAACACT 60.105 36.000 2.36 0.00 36.57 3.55
104 105 3.459969 GGACCTCCTAGATCCAACCAATT 59.540 47.826 0.00 0.00 24.21 2.32
230 247 6.094193 TCATACTCATCATCACTGTCATCC 57.906 41.667 0.00 0.00 0.00 3.51
246 263 3.900601 GTCATCCTCATACTCCACATCCT 59.099 47.826 0.00 0.00 0.00 3.24
321 338 4.954118 AGGCACCCACCTCCGTCA 62.954 66.667 0.00 0.00 33.62 4.35
330 347 0.526662 CACCTCCGTCACCTCTACAC 59.473 60.000 0.00 0.00 0.00 2.90
351 368 2.481795 CCACCACAAGCAAAAGGAACAG 60.482 50.000 0.00 0.00 0.00 3.16
362 382 4.451435 GCAAAAGGAACAGTCACTACCTAC 59.549 45.833 0.00 0.00 0.00 3.18
367 387 4.652421 AGGAACAGTCACTACCTACACAAA 59.348 41.667 0.00 0.00 0.00 2.83
371 391 5.706916 ACAGTCACTACCTACACAAATACG 58.293 41.667 0.00 0.00 0.00 3.06
372 392 5.242393 ACAGTCACTACCTACACAAATACGT 59.758 40.000 0.00 0.00 0.00 3.57
373 393 6.430925 ACAGTCACTACCTACACAAATACGTA 59.569 38.462 0.00 0.00 0.00 3.57
374 394 6.744537 CAGTCACTACCTACACAAATACGTAC 59.255 42.308 0.00 0.00 0.00 3.67
375 395 6.656693 AGTCACTACCTACACAAATACGTACT 59.343 38.462 0.00 0.00 0.00 2.73
376 396 6.963805 GTCACTACCTACACAAATACGTACTC 59.036 42.308 0.00 0.00 0.00 2.59
377 397 6.881065 TCACTACCTACACAAATACGTACTCT 59.119 38.462 0.00 0.00 0.00 3.24
378 398 8.040727 TCACTACCTACACAAATACGTACTCTA 58.959 37.037 0.00 0.00 0.00 2.43
440 464 2.786495 GCGCGAGATCAAGAGGGGA 61.786 63.158 12.10 0.00 0.00 4.81
770 822 1.732809 GGAGAGAAACTAAAGCGGTGC 59.267 52.381 0.00 0.00 0.00 5.01
776 828 0.949105 AACTAAAGCGGTGCCACTCG 60.949 55.000 0.00 0.00 0.00 4.18
825 898 1.941377 TCTTCCTGGGCTAACGGTTA 58.059 50.000 0.00 0.00 0.00 2.85
1160 1257 2.108362 CGGATCCGGTAAGCACCC 59.892 66.667 26.95 0.00 42.43 4.61
1168 1265 2.267961 GTAAGCACCCGACCCCTG 59.732 66.667 0.00 0.00 0.00 4.45
1182 1279 4.814294 CCTGGCGCCTACCACGAC 62.814 72.222 29.70 0.00 39.63 4.34
1266 1363 2.158827 TGCCTAGCTGCCGAATGATTTA 60.159 45.455 0.00 0.00 0.00 1.40
1288 1385 3.066380 GGCACAAAAATAAACTGGCCTG 58.934 45.455 8.29 8.29 37.22 4.85
1289 1386 3.494223 GGCACAAAAATAAACTGGCCTGT 60.494 43.478 9.88 9.88 37.22 4.00
1290 1387 4.262249 GGCACAAAAATAAACTGGCCTGTA 60.262 41.667 16.48 1.22 37.22 2.74
1291 1388 5.293560 GCACAAAAATAAACTGGCCTGTAA 58.706 37.500 16.48 7.91 0.00 2.41
1292 1389 5.931724 GCACAAAAATAAACTGGCCTGTAAT 59.068 36.000 16.48 9.92 0.00 1.89
1293 1390 6.426633 GCACAAAAATAAACTGGCCTGTAATT 59.573 34.615 16.48 15.02 0.00 1.40
1294 1391 7.041440 GCACAAAAATAAACTGGCCTGTAATTT 60.041 33.333 16.48 19.35 0.00 1.82
1295 1392 8.281893 CACAAAAATAAACTGGCCTGTAATTTG 58.718 33.333 24.44 23.35 0.00 2.32
1296 1393 7.443879 ACAAAAATAAACTGGCCTGTAATTTGG 59.556 33.333 24.44 21.85 0.00 3.28
1297 1394 6.680148 AAATAAACTGGCCTGTAATTTGGT 57.320 33.333 23.71 9.72 0.00 3.67
1298 1395 6.680148 AATAAACTGGCCTGTAATTTGGTT 57.320 33.333 16.48 7.23 0.00 3.67
1299 1396 4.600692 AAACTGGCCTGTAATTTGGTTC 57.399 40.909 16.48 0.00 0.00 3.62
1300 1397 3.525800 ACTGGCCTGTAATTTGGTTCT 57.474 42.857 14.47 0.00 0.00 3.01
1301 1398 3.844640 ACTGGCCTGTAATTTGGTTCTT 58.155 40.909 14.47 0.00 0.00 2.52
1302 1399 3.573967 ACTGGCCTGTAATTTGGTTCTTG 59.426 43.478 14.47 0.00 0.00 3.02
1303 1400 2.298729 TGGCCTGTAATTTGGTTCTTGC 59.701 45.455 3.32 0.00 0.00 4.01
1304 1401 2.353704 GGCCTGTAATTTGGTTCTTGCC 60.354 50.000 0.00 0.00 0.00 4.52
1305 1402 2.562738 GCCTGTAATTTGGTTCTTGCCT 59.437 45.455 0.00 0.00 0.00 4.75
1306 1403 3.367395 GCCTGTAATTTGGTTCTTGCCTC 60.367 47.826 0.00 0.00 0.00 4.70
1307 1404 3.826157 CCTGTAATTTGGTTCTTGCCTCA 59.174 43.478 0.00 0.00 0.00 3.86
1308 1405 4.280677 CCTGTAATTTGGTTCTTGCCTCAA 59.719 41.667 0.00 0.00 0.00 3.02
1309 1406 5.452078 TGTAATTTGGTTCTTGCCTCAAG 57.548 39.130 0.37 0.37 42.25 3.02
1310 1407 5.136828 TGTAATTTGGTTCTTGCCTCAAGA 58.863 37.500 5.25 5.25 46.93 3.02
1317 1414 2.847327 TCTTGCCTCAAGAAGTCAGG 57.153 50.000 6.78 0.00 45.84 3.86
1318 1415 2.329267 TCTTGCCTCAAGAAGTCAGGA 58.671 47.619 6.78 0.00 45.84 3.86
1319 1416 2.909006 TCTTGCCTCAAGAAGTCAGGAT 59.091 45.455 6.78 0.00 45.84 3.24
1320 1417 4.096681 TCTTGCCTCAAGAAGTCAGGATA 58.903 43.478 6.78 0.00 45.84 2.59
1321 1418 4.161189 TCTTGCCTCAAGAAGTCAGGATAG 59.839 45.833 6.78 0.00 45.84 2.08
1322 1419 2.169352 TGCCTCAAGAAGTCAGGATAGC 59.831 50.000 0.00 0.00 0.00 2.97
1323 1420 2.433970 GCCTCAAGAAGTCAGGATAGCT 59.566 50.000 0.00 0.00 0.00 3.32
1324 1421 3.740764 GCCTCAAGAAGTCAGGATAGCTG 60.741 52.174 0.00 0.00 0.00 4.24
1325 1422 3.450457 CCTCAAGAAGTCAGGATAGCTGT 59.550 47.826 0.00 0.00 0.00 4.40
1326 1423 4.431809 CTCAAGAAGTCAGGATAGCTGTG 58.568 47.826 0.00 0.00 0.00 3.66
1327 1424 3.834813 TCAAGAAGTCAGGATAGCTGTGT 59.165 43.478 0.00 0.00 0.00 3.72
1328 1425 3.883830 AGAAGTCAGGATAGCTGTGTG 57.116 47.619 0.00 0.00 0.00 3.82
1329 1426 2.499289 AGAAGTCAGGATAGCTGTGTGG 59.501 50.000 0.00 0.00 0.00 4.17
1330 1427 1.944177 AGTCAGGATAGCTGTGTGGT 58.056 50.000 0.00 0.00 0.00 4.16
1331 1428 1.552337 AGTCAGGATAGCTGTGTGGTG 59.448 52.381 0.00 0.00 0.00 4.17
1332 1429 0.904649 TCAGGATAGCTGTGTGGTGG 59.095 55.000 0.00 0.00 0.00 4.61
1333 1430 0.107508 CAGGATAGCTGTGTGGTGGG 60.108 60.000 0.00 0.00 0.00 4.61
1334 1431 1.224592 GGATAGCTGTGTGGTGGGG 59.775 63.158 0.00 0.00 0.00 4.96
1335 1432 1.224592 GATAGCTGTGTGGTGGGGG 59.775 63.158 0.00 0.00 0.00 5.40
1349 1446 3.171348 GGGGGTTTCCTGTGCTCT 58.829 61.111 0.00 0.00 35.33 4.09
1350 1447 1.303643 GGGGGTTTCCTGTGCTCTG 60.304 63.158 0.00 0.00 35.33 3.35
1351 1448 1.456287 GGGGTTTCCTGTGCTCTGT 59.544 57.895 0.00 0.00 0.00 3.41
1352 1449 0.606673 GGGGTTTCCTGTGCTCTGTC 60.607 60.000 0.00 0.00 0.00 3.51
1353 1450 0.398318 GGGTTTCCTGTGCTCTGTCT 59.602 55.000 0.00 0.00 0.00 3.41
1354 1451 1.609320 GGGTTTCCTGTGCTCTGTCTC 60.609 57.143 0.00 0.00 0.00 3.36
1355 1452 1.346068 GGTTTCCTGTGCTCTGTCTCT 59.654 52.381 0.00 0.00 0.00 3.10
1356 1453 2.611722 GGTTTCCTGTGCTCTGTCTCTC 60.612 54.545 0.00 0.00 0.00 3.20
1357 1454 2.298729 GTTTCCTGTGCTCTGTCTCTCT 59.701 50.000 0.00 0.00 0.00 3.10
1358 1455 1.543607 TCCTGTGCTCTGTCTCTCTG 58.456 55.000 0.00 0.00 0.00 3.35
1359 1456 1.202989 TCCTGTGCTCTGTCTCTCTGT 60.203 52.381 0.00 0.00 0.00 3.41
1360 1457 1.617850 CCTGTGCTCTGTCTCTCTGTT 59.382 52.381 0.00 0.00 0.00 3.16
1361 1458 2.036992 CCTGTGCTCTGTCTCTCTGTTT 59.963 50.000 0.00 0.00 0.00 2.83
1362 1459 3.494048 CCTGTGCTCTGTCTCTCTGTTTT 60.494 47.826 0.00 0.00 0.00 2.43
1363 1460 3.461061 TGTGCTCTGTCTCTCTGTTTTG 58.539 45.455 0.00 0.00 0.00 2.44
1364 1461 3.132824 TGTGCTCTGTCTCTCTGTTTTGA 59.867 43.478 0.00 0.00 0.00 2.69
1365 1462 4.122776 GTGCTCTGTCTCTCTGTTTTGAA 58.877 43.478 0.00 0.00 0.00 2.69
1366 1463 4.754114 GTGCTCTGTCTCTCTGTTTTGAAT 59.246 41.667 0.00 0.00 0.00 2.57
1367 1464 5.238214 GTGCTCTGTCTCTCTGTTTTGAATT 59.762 40.000 0.00 0.00 0.00 2.17
1368 1465 6.425114 GTGCTCTGTCTCTCTGTTTTGAATTA 59.575 38.462 0.00 0.00 0.00 1.40
1369 1466 6.992123 TGCTCTGTCTCTCTGTTTTGAATTAA 59.008 34.615 0.00 0.00 0.00 1.40
1370 1467 7.498900 TGCTCTGTCTCTCTGTTTTGAATTAAA 59.501 33.333 0.00 0.00 0.00 1.52
1371 1468 8.510505 GCTCTGTCTCTCTGTTTTGAATTAAAT 58.489 33.333 0.00 0.00 0.00 1.40
1372 1469 9.823098 CTCTGTCTCTCTGTTTTGAATTAAATG 57.177 33.333 0.00 0.00 0.00 2.32
1373 1470 9.342308 TCTGTCTCTCTGTTTTGAATTAAATGT 57.658 29.630 0.00 0.00 0.00 2.71
1374 1471 9.956720 CTGTCTCTCTGTTTTGAATTAAATGTT 57.043 29.630 0.00 0.00 0.00 2.71
1375 1472 9.734620 TGTCTCTCTGTTTTGAATTAAATGTTG 57.265 29.630 0.00 0.00 0.00 3.33
1376 1473 8.694394 GTCTCTCTGTTTTGAATTAAATGTTGC 58.306 33.333 0.00 0.00 0.00 4.17
1377 1474 8.632679 TCTCTCTGTTTTGAATTAAATGTTGCT 58.367 29.630 0.00 0.00 0.00 3.91
1378 1475 8.578308 TCTCTGTTTTGAATTAAATGTTGCTG 57.422 30.769 0.00 0.00 0.00 4.41
1379 1476 8.196771 TCTCTGTTTTGAATTAAATGTTGCTGT 58.803 29.630 0.00 0.00 0.00 4.40
1380 1477 8.715191 TCTGTTTTGAATTAAATGTTGCTGTT 57.285 26.923 0.00 0.00 0.00 3.16
1381 1478 9.160496 TCTGTTTTGAATTAAATGTTGCTGTTT 57.840 25.926 0.00 0.00 0.00 2.83
1382 1479 9.771915 CTGTTTTGAATTAAATGTTGCTGTTTT 57.228 25.926 0.00 0.00 0.00 2.43
1383 1480 9.552114 TGTTTTGAATTAAATGTTGCTGTTTTG 57.448 25.926 0.00 0.00 0.00 2.44
1384 1481 9.766277 GTTTTGAATTAAATGTTGCTGTTTTGA 57.234 25.926 0.00 0.00 0.00 2.69
1392 1489 9.907576 TTAAATGTTGCTGTTTTGAATTAAACG 57.092 25.926 0.00 0.00 40.14 3.60
1393 1490 7.763172 AATGTTGCTGTTTTGAATTAAACGA 57.237 28.000 0.00 0.00 40.14 3.85
1394 1491 6.561945 TGTTGCTGTTTTGAATTAAACGAC 57.438 33.333 0.00 0.00 40.14 4.34
1395 1492 5.517054 TGTTGCTGTTTTGAATTAAACGACC 59.483 36.000 0.00 0.00 40.14 4.79
1396 1493 4.612943 TGCTGTTTTGAATTAAACGACCC 58.387 39.130 0.00 0.00 40.14 4.46
1397 1494 3.666797 GCTGTTTTGAATTAAACGACCCG 59.333 43.478 0.00 0.00 40.14 5.28
1398 1495 3.630101 TGTTTTGAATTAAACGACCCGC 58.370 40.909 0.00 0.00 40.14 6.13
1400 1497 1.793258 TTGAATTAAACGACCCGCGA 58.207 45.000 8.23 0.00 44.57 5.87
1401 1498 1.793258 TGAATTAAACGACCCGCGAA 58.207 45.000 8.23 0.00 44.57 4.70
1402 1499 2.141517 TGAATTAAACGACCCGCGAAA 58.858 42.857 8.23 0.00 44.57 3.46
1403 1500 2.743126 TGAATTAAACGACCCGCGAAAT 59.257 40.909 8.23 0.00 44.57 2.17
1404 1501 3.181518 TGAATTAAACGACCCGCGAAATC 60.182 43.478 8.23 0.09 44.57 2.17
1405 1502 2.083167 TTAAACGACCCGCGAAATCT 57.917 45.000 8.23 0.00 44.57 2.40
1406 1503 2.937469 TAAACGACCCGCGAAATCTA 57.063 45.000 8.23 0.00 44.57 1.98
1407 1504 1.353076 AAACGACCCGCGAAATCTAC 58.647 50.000 8.23 0.00 44.57 2.59
1408 1505 0.529378 AACGACCCGCGAAATCTACT 59.471 50.000 8.23 0.00 44.57 2.57
1409 1506 0.529378 ACGACCCGCGAAATCTACTT 59.471 50.000 8.23 0.00 44.57 2.24
1410 1507 1.067354 ACGACCCGCGAAATCTACTTT 60.067 47.619 8.23 0.00 44.57 2.66
1411 1508 1.323534 CGACCCGCGAAATCTACTTTG 59.676 52.381 8.23 0.00 44.57 2.77
1412 1509 1.062148 GACCCGCGAAATCTACTTTGC 59.938 52.381 8.23 0.00 0.00 3.68
1413 1510 1.338769 ACCCGCGAAATCTACTTTGCT 60.339 47.619 8.23 0.00 0.00 3.91
1414 1511 1.062587 CCCGCGAAATCTACTTTGCTG 59.937 52.381 8.23 0.00 0.00 4.41
1415 1512 1.529826 CCGCGAAATCTACTTTGCTGC 60.530 52.381 8.23 0.00 0.00 5.25
1416 1513 1.394917 CGCGAAATCTACTTTGCTGCT 59.605 47.619 0.00 0.00 0.00 4.24
1417 1514 2.778659 GCGAAATCTACTTTGCTGCTG 58.221 47.619 0.00 0.00 0.00 4.41
1418 1515 2.778659 CGAAATCTACTTTGCTGCTGC 58.221 47.619 8.89 8.89 40.20 5.25
1419 1516 2.417933 CGAAATCTACTTTGCTGCTGCT 59.582 45.455 17.00 0.00 40.48 4.24
1420 1517 3.484886 CGAAATCTACTTTGCTGCTGCTC 60.485 47.826 17.00 1.00 40.48 4.26
1421 1518 2.035530 ATCTACTTTGCTGCTGCTCC 57.964 50.000 17.00 0.00 40.48 4.70
1422 1519 0.979665 TCTACTTTGCTGCTGCTCCT 59.020 50.000 17.00 0.00 40.48 3.69
1423 1520 1.085091 CTACTTTGCTGCTGCTCCTG 58.915 55.000 17.00 6.95 40.48 3.86
1424 1521 0.397941 TACTTTGCTGCTGCTCCTGT 59.602 50.000 17.00 11.87 40.48 4.00
1425 1522 1.170919 ACTTTGCTGCTGCTCCTGTG 61.171 55.000 17.00 4.07 40.48 3.66
1437 1534 1.359848 CTCCTGTGCGGTGATTGTAC 58.640 55.000 0.00 0.00 0.00 2.90
1439 1536 0.389296 CCTGTGCGGTGATTGTACGA 60.389 55.000 0.00 0.00 0.00 3.43
1464 1561 3.334054 GGGTCCTTCTGCTGGGCT 61.334 66.667 0.00 0.00 0.00 5.19
1465 1562 2.759795 GGTCCTTCTGCTGGGCTT 59.240 61.111 0.00 0.00 0.00 4.35
1466 1563 1.075659 GGTCCTTCTGCTGGGCTTT 59.924 57.895 0.00 0.00 0.00 3.51
1467 1564 0.962855 GGTCCTTCTGCTGGGCTTTC 60.963 60.000 0.00 0.00 0.00 2.62
1468 1565 0.962855 GTCCTTCTGCTGGGCTTTCC 60.963 60.000 0.00 0.00 0.00 3.13
1469 1566 1.136329 TCCTTCTGCTGGGCTTTCCT 61.136 55.000 0.00 0.00 36.20 3.36
1470 1567 0.620556 CCTTCTGCTGGGCTTTCCTA 59.379 55.000 0.00 0.00 36.20 2.94
1479 1583 0.541863 GGGCTTTCCTACTAGCTGCA 59.458 55.000 1.02 0.00 37.54 4.41
1482 1586 1.946745 CTTTCCTACTAGCTGCAGGC 58.053 55.000 17.12 7.98 42.19 4.85
1503 1613 3.503748 GCTGATTTAGGCACAGAGTGTTT 59.496 43.478 0.00 0.00 35.75 2.83
1509 1619 0.400594 GGCACAGAGTGTTTAGGGGT 59.599 55.000 0.00 0.00 35.75 4.95
1513 1623 2.293399 CACAGAGTGTTTAGGGGTTTGC 59.707 50.000 0.00 0.00 0.00 3.68
1519 1629 4.223144 AGTGTTTAGGGGTTTGCTTGATT 58.777 39.130 0.00 0.00 0.00 2.57
1523 1633 5.221422 TGTTTAGGGGTTTGCTTGATTTGAG 60.221 40.000 0.00 0.00 0.00 3.02
1524 1634 3.243359 AGGGGTTTGCTTGATTTGAGA 57.757 42.857 0.00 0.00 0.00 3.27
1525 1635 2.893489 AGGGGTTTGCTTGATTTGAGAC 59.107 45.455 0.00 0.00 0.00 3.36
1529 1647 2.627699 GTTTGCTTGATTTGAGACCCCA 59.372 45.455 0.00 0.00 0.00 4.96
1531 1649 2.726821 TGCTTGATTTGAGACCCCATC 58.273 47.619 0.00 0.00 0.00 3.51
1541 1659 0.249398 AGACCCCATCAACGTGCTAC 59.751 55.000 0.00 0.00 0.00 3.58
1557 1675 5.468746 ACGTGCTACATGTTGTTTTATCTGT 59.531 36.000 2.30 0.00 28.11 3.41
1562 1680 8.194104 TGCTACATGTTGTTTTATCTGTGTTTT 58.806 29.630 2.30 0.00 0.00 2.43
1566 1684 9.086336 ACATGTTGTTTTATCTGTGTTTTCTTG 57.914 29.630 0.00 0.00 0.00 3.02
1581 1699 2.038863 TCTTGGGACTGGGCTAGAAA 57.961 50.000 4.33 0.00 0.00 2.52
1582 1700 2.562296 TCTTGGGACTGGGCTAGAAAT 58.438 47.619 4.33 0.00 0.00 2.17
1585 1703 4.538490 TCTTGGGACTGGGCTAGAAATTAA 59.462 41.667 4.33 0.00 0.00 1.40
1586 1704 4.230745 TGGGACTGGGCTAGAAATTAAC 57.769 45.455 4.33 0.00 0.00 2.01
1685 1818 4.074970 TCTCTCTGTTTTGAGGGAAATGC 58.925 43.478 0.00 0.00 40.28 3.56
1705 1838 5.766150 TGCTGCTGTAGTTAAAATGTTGT 57.234 34.783 0.00 0.00 0.00 3.32
1707 1840 4.382754 GCTGCTGTAGTTAAAATGTTGTGC 59.617 41.667 0.00 0.00 0.00 4.57
1708 1841 4.865776 TGCTGTAGTTAAAATGTTGTGCC 58.134 39.130 0.00 0.00 0.00 5.01
1709 1842 4.339530 TGCTGTAGTTAAAATGTTGTGCCA 59.660 37.500 0.00 0.00 0.00 4.92
1710 1843 5.010516 TGCTGTAGTTAAAATGTTGTGCCAT 59.989 36.000 0.00 0.00 0.00 4.40
1711 1844 6.207614 TGCTGTAGTTAAAATGTTGTGCCATA 59.792 34.615 0.00 0.00 0.00 2.74
1763 1923 7.954305 TCATAGTATGAACACAACTGTGAGCAA 60.954 37.037 16.52 0.17 41.43 3.91
1905 2296 9.790344 CCATCTCTGGAATTTCTCATAATAACT 57.210 33.333 0.00 0.00 46.37 2.24
1912 2305 7.560991 TGGAATTTCTCATAATAACTGTGGCAT 59.439 33.333 0.00 0.00 0.00 4.40
1930 2365 2.524034 CATCAGTAGATCGCTATGCCG 58.476 52.381 0.00 0.00 30.20 5.69
1948 2383 0.246360 CGAATTCCAAAAGGGGTGCC 59.754 55.000 0.00 0.00 37.22 5.01
1976 2411 5.791336 AACAGAAGGAAATTCTTTGTCCC 57.209 39.130 0.00 0.00 46.49 4.46
2006 2441 3.878086 AATCTGCAAACACGTGTACAG 57.122 42.857 27.55 27.55 0.00 2.74
2016 2451 3.459145 ACACGTGTACAGTGCATTGTTA 58.541 40.909 21.98 7.48 42.94 2.41
2027 2462 3.885297 AGTGCATTGTTACTGACTTGCTT 59.115 39.130 0.00 0.00 38.27 3.91
2028 2463 5.049474 CAGTGCATTGTTACTGACTTGCTTA 60.049 40.000 14.25 0.00 45.46 3.09
2029 2464 5.530915 AGTGCATTGTTACTGACTTGCTTAA 59.469 36.000 0.00 0.00 38.27 1.85
2030 2465 6.207417 AGTGCATTGTTACTGACTTGCTTAAT 59.793 34.615 0.00 0.00 38.27 1.40
2031 2466 6.863126 GTGCATTGTTACTGACTTGCTTAATT 59.137 34.615 0.00 0.00 38.27 1.40
2032 2467 6.862608 TGCATTGTTACTGACTTGCTTAATTG 59.137 34.615 0.00 0.00 38.27 2.32
2033 2468 6.183360 GCATTGTTACTGACTTGCTTAATTGC 60.183 38.462 0.00 0.00 36.10 3.56
2034 2469 6.384258 TTGTTACTGACTTGCTTAATTGCA 57.616 33.333 0.00 0.00 41.65 4.08
2035 2470 6.573664 TGTTACTGACTTGCTTAATTGCAT 57.426 33.333 0.00 0.00 42.96 3.96
2119 2554 2.057137 TTCAAACTGCAGGCAAGACT 57.943 45.000 19.93 0.00 0.00 3.24
2209 2644 4.439974 GGTTCTGCTTTTCATGACACACAA 60.440 41.667 0.00 0.00 0.00 3.33
2248 2683 2.375509 CCTTTCCTACTTGGGTGGTTCT 59.624 50.000 0.00 0.00 36.20 3.01
2279 2714 5.107453 CGGAATGTCAGTTCAGTTGTAAGTC 60.107 44.000 0.00 0.00 0.00 3.01
2299 2734 4.887655 AGTCCCCTCTTTGTTTACTTGTTG 59.112 41.667 0.00 0.00 0.00 3.33
2334 2769 4.641777 GCTCTTGCTTGGTTGCAC 57.358 55.556 0.00 0.00 43.20 4.57
2335 2770 2.036236 GCTCTTGCTTGGTTGCACT 58.964 52.632 0.00 0.00 43.20 4.40
2336 2771 1.238439 GCTCTTGCTTGGTTGCACTA 58.762 50.000 0.00 0.00 43.20 2.74
2337 2772 1.608590 GCTCTTGCTTGGTTGCACTAA 59.391 47.619 0.00 0.00 43.20 2.24
2338 2773 2.229784 GCTCTTGCTTGGTTGCACTAAT 59.770 45.455 0.00 0.00 43.20 1.73
2339 2774 3.440173 GCTCTTGCTTGGTTGCACTAATA 59.560 43.478 0.00 0.00 43.20 0.98
2340 2775 4.096984 GCTCTTGCTTGGTTGCACTAATAT 59.903 41.667 0.00 0.00 43.20 1.28
2341 2776 5.296780 GCTCTTGCTTGGTTGCACTAATATA 59.703 40.000 0.00 0.00 43.20 0.86
2342 2777 6.512415 GCTCTTGCTTGGTTGCACTAATATAG 60.512 42.308 0.00 0.00 43.20 1.31
2343 2778 6.414732 TCTTGCTTGGTTGCACTAATATAGT 58.585 36.000 0.00 0.00 43.20 2.12
2356 2791 6.388435 ACTAATATAGTGGTTCGTGGAGTC 57.612 41.667 0.00 0.00 37.69 3.36
2357 2792 3.984508 ATATAGTGGTTCGTGGAGTCG 57.015 47.619 0.00 0.00 0.00 4.18
2358 2793 0.815734 ATAGTGGTTCGTGGAGTCGG 59.184 55.000 0.00 0.00 0.00 4.79
2359 2794 0.250858 TAGTGGTTCGTGGAGTCGGA 60.251 55.000 0.00 0.00 0.00 4.55
2360 2795 1.111116 AGTGGTTCGTGGAGTCGGAA 61.111 55.000 0.00 0.00 0.00 4.30
2361 2796 0.037605 GTGGTTCGTGGAGTCGGAAT 60.038 55.000 0.00 0.00 0.00 3.01
2362 2797 0.037697 TGGTTCGTGGAGTCGGAATG 60.038 55.000 0.00 0.00 0.00 2.67
2363 2798 0.245539 GGTTCGTGGAGTCGGAATGA 59.754 55.000 0.00 0.00 0.00 2.57
2373 2808 4.649218 TGGAGTCGGAATGATTCACTATCA 59.351 41.667 7.56 3.13 46.86 2.15
2395 2830 3.980646 TGTTTGCGTAACTGAGCATTT 57.019 38.095 3.59 0.00 43.42 2.32
2396 2831 4.300189 TGTTTGCGTAACTGAGCATTTT 57.700 36.364 3.59 0.00 43.42 1.82
2429 2864 6.423776 TTTCAAATGGCTTTCTCCAGAAAT 57.576 33.333 2.21 0.00 42.44 2.17
2504 2939 3.961477 TTCGTCCATGTTGTTTCAGTG 57.039 42.857 0.00 0.00 0.00 3.66
2508 2943 3.303329 CGTCCATGTTGTTTCAGTGTCTG 60.303 47.826 0.00 0.00 0.00 3.51
2510 2945 3.627123 TCCATGTTGTTTCAGTGTCTGTG 59.373 43.478 0.00 0.00 32.61 3.66
2514 2949 3.627123 TGTTGTTTCAGTGTCTGTGGATG 59.373 43.478 0.00 0.00 32.61 3.51
2520 2955 4.790765 TCAGTGTCTGTGGATGTTCTAG 57.209 45.455 0.00 0.00 32.61 2.43
2532 2967 3.526534 GATGTTCTAGGGTGCTTGACTC 58.473 50.000 0.00 0.00 0.00 3.36
2552 2987 4.872691 ACTCAATATTGTAGCTGCAGTGAC 59.127 41.667 16.64 13.83 0.00 3.67
2649 3108 5.450592 TTGTTGACAGCTCATTTTATGCA 57.549 34.783 0.00 0.00 0.00 3.96
2698 3157 8.836413 GGCTTTGTATCTTACATGCAAGTAATA 58.164 33.333 14.38 8.48 39.00 0.98
2807 3266 9.090692 GCATATGCATATCCCATTATTTGTTTC 57.909 33.333 22.84 0.00 41.59 2.78
3061 3537 8.911918 TGACAGTACATGTAAATACACCTTTT 57.088 30.769 7.25 0.00 44.17 2.27
3323 3799 4.326504 CCAAGTTGGTTGCTTCTTGATT 57.673 40.909 14.21 0.00 39.39 2.57
3466 3947 7.309194 GGTGTAATCTAGTGCAAAGAAAACCAT 60.309 37.037 4.27 0.00 0.00 3.55
3467 3948 7.538678 GTGTAATCTAGTGCAAAGAAAACCATG 59.461 37.037 4.27 0.00 0.00 3.66
3566 4047 3.202906 TGCCACTATTTATGTCTTCGCC 58.797 45.455 0.00 0.00 0.00 5.54
3614 4095 2.681848 CTCACTTCATTGCCCATCAGTC 59.318 50.000 0.00 0.00 0.00 3.51
3749 4347 4.098654 GTGATCCATGCTCGTATATAGCCT 59.901 45.833 7.38 0.00 39.30 4.58
3754 4352 2.594131 TGCTCGTATATAGCCTGGTGT 58.406 47.619 7.38 0.00 39.30 4.16
3802 4400 5.285651 GTCTGTCTCTTAGCTAATTCGCAT 58.714 41.667 6.64 0.00 0.00 4.73
3803 4401 5.751028 GTCTGTCTCTTAGCTAATTCGCATT 59.249 40.000 6.64 0.00 0.00 3.56
3804 4402 5.750547 TCTGTCTCTTAGCTAATTCGCATTG 59.249 40.000 6.64 0.00 0.00 2.82
3805 4403 5.660460 TGTCTCTTAGCTAATTCGCATTGA 58.340 37.500 6.64 0.00 0.00 2.57
3806 4404 5.520288 TGTCTCTTAGCTAATTCGCATTGAC 59.480 40.000 6.64 7.30 0.00 3.18
3808 4406 6.036083 GTCTCTTAGCTAATTCGCATTGACAA 59.964 38.462 6.64 0.00 0.00 3.18
3809 4407 6.593770 TCTCTTAGCTAATTCGCATTGACAAA 59.406 34.615 6.64 0.00 0.00 2.83
3810 4408 6.775088 TCTTAGCTAATTCGCATTGACAAAG 58.225 36.000 6.64 0.00 0.00 2.77
4057 4670 1.550524 AGAATGCGAGCAGGTAACAGA 59.449 47.619 3.58 0.00 41.41 3.41
4069 4682 5.413833 AGCAGGTAACAGATTTCAGTTCATG 59.586 40.000 0.00 0.00 41.41 3.07
4072 4685 6.006449 AGGTAACAGATTTCAGTTCATGCTT 58.994 36.000 0.00 0.00 41.41 3.91
4078 4691 6.091437 CAGATTTCAGTTCATGCTTCCTTTC 58.909 40.000 0.00 0.00 0.00 2.62
4079 4692 4.853924 TTTCAGTTCATGCTTCCTTTCC 57.146 40.909 0.00 0.00 0.00 3.13
4080 4693 2.795329 TCAGTTCATGCTTCCTTTCCC 58.205 47.619 0.00 0.00 0.00 3.97
4081 4694 2.108075 TCAGTTCATGCTTCCTTTCCCA 59.892 45.455 0.00 0.00 0.00 4.37
4082 4695 2.490903 CAGTTCATGCTTCCTTTCCCAG 59.509 50.000 0.00 0.00 0.00 4.45
4086 4706 0.337428 ATGCTTCCTTTCCCAGCCAT 59.663 50.000 0.00 0.00 32.11 4.40
4282 4902 1.300697 GAACCTGCTGTCGGTCGTT 60.301 57.895 0.00 0.00 32.46 3.85
4297 4917 2.143122 GTCGTTGAGTCATGGCTGAAA 58.857 47.619 3.48 0.00 31.85 2.69
4324 4944 1.420138 ACCAAGCTCCCGAAGAAAGAA 59.580 47.619 0.00 0.00 0.00 2.52
4330 4950 2.038837 CCCGAAGAAAGAACCCGCC 61.039 63.158 0.00 0.00 0.00 6.13
4383 5004 4.162690 CGAGCCTCCCCTTTCCGG 62.163 72.222 0.00 0.00 0.00 5.14
4417 5038 1.961394 TGGCCTACTACCGATGATGAC 59.039 52.381 3.32 0.00 0.00 3.06
4432 5053 3.659786 TGATGACCGTGTAAAACCTCTG 58.340 45.455 0.00 0.00 0.00 3.35
4451 5072 2.044053 ACCCATTCCGGTGCCATG 60.044 61.111 0.00 0.00 33.77 3.66
4473 5094 4.081972 TGCAACTCTGGAGTCTGTATCTTC 60.082 45.833 3.60 0.00 41.58 2.87
4522 5143 7.284716 CCCTGTATACGGCAATGTATCTATCTA 59.715 40.741 6.15 0.00 36.48 1.98
4523 5144 8.683615 CCTGTATACGGCAATGTATCTATCTAA 58.316 37.037 6.15 0.00 36.48 2.10
4548 5169 9.916397 AAATCTAAATAATAAACAAGTCGAGCG 57.084 29.630 0.00 0.00 0.00 5.03
4549 5170 8.644318 ATCTAAATAATAAACAAGTCGAGCGT 57.356 30.769 0.00 0.00 0.00 5.07
4550 5171 7.891782 TCTAAATAATAAACAAGTCGAGCGTG 58.108 34.615 0.00 0.00 0.00 5.34
4551 5172 2.875080 AATAAACAAGTCGAGCGTGC 57.125 45.000 0.00 0.00 0.00 5.34
4552 5173 0.713883 ATAAACAAGTCGAGCGTGCG 59.286 50.000 0.00 0.00 0.00 5.34
4557 5178 0.023732 CAAGTCGAGCGTGCGTAATG 59.976 55.000 0.00 0.00 0.00 1.90
4563 5184 0.855349 GAGCGTGCGTAATGATCCTG 59.145 55.000 0.00 0.00 0.00 3.86
4573 5194 4.645535 CGTAATGATCCTGTTCCCATCAT 58.354 43.478 0.00 0.00 38.63 2.45
4574 5195 5.065914 CGTAATGATCCTGTTCCCATCATT 58.934 41.667 10.38 10.38 45.21 2.57
4575 5196 5.049198 CGTAATGATCCTGTTCCCATCATTG 60.049 44.000 14.01 0.00 43.78 2.82
4579 5233 4.079615 TGATCCTGTTCCCATCATTGTGAT 60.080 41.667 0.00 0.00 37.65 3.06
4620 5274 6.536582 ACAGATTACACAGTGCTACATGAATC 59.463 38.462 0.00 0.00 0.00 2.52
4652 5314 1.694150 TCAGTCCCTGTCTTTCTGTGG 59.306 52.381 0.00 0.00 32.61 4.17
4663 5325 0.685097 TTTCTGTGGGGAAGTCTCCG 59.315 55.000 0.00 0.00 43.51 4.63
4680 5388 1.005569 TCCGTGTACCTGTCTCCTCAT 59.994 52.381 0.00 0.00 0.00 2.90
4687 5395 3.127791 ACCTGTCTCCTCATCCTCATT 57.872 47.619 0.00 0.00 0.00 2.57
4731 5439 7.900782 ACATTGTTAAATCTACTTACAGCGT 57.099 32.000 0.00 0.00 0.00 5.07
4734 5442 6.699895 TGTTAAATCTACTTACAGCGTGTG 57.300 37.500 1.58 0.00 0.00 3.82
4740 5448 5.006153 TCTACTTACAGCGTGTGCATATT 57.994 39.130 0.00 0.00 46.23 1.28
4745 5453 5.815222 ACTTACAGCGTGTGCATATTATCAA 59.185 36.000 0.00 0.00 46.23 2.57
4751 5459 4.555313 GCGTGTGCATATTATCAACATGCT 60.555 41.667 17.49 0.00 44.27 3.79
4756 5464 6.207025 TGTGCATATTATCAACATGCTATGCA 59.793 34.615 10.12 10.12 45.32 3.96
4757 5465 6.745907 GTGCATATTATCAACATGCTATGCAG 59.254 38.462 13.55 0.00 46.97 4.41
4758 5466 6.431852 TGCATATTATCAACATGCTATGCAGT 59.568 34.615 10.12 0.00 43.69 4.40
4759 5467 6.745907 GCATATTATCAACATGCTATGCAGTG 59.254 38.462 7.31 0.00 43.65 3.66
4760 5468 7.361457 GCATATTATCAACATGCTATGCAGTGA 60.361 37.037 0.00 2.71 43.65 3.41
4761 5469 5.739752 TTATCAACATGCTATGCAGTGAC 57.260 39.130 0.00 0.00 43.65 3.67
4762 5470 2.358957 TCAACATGCTATGCAGTGACC 58.641 47.619 0.00 0.00 43.65 4.02
4763 5471 1.402968 CAACATGCTATGCAGTGACCC 59.597 52.381 0.00 0.00 43.65 4.46
4764 5472 0.914644 ACATGCTATGCAGTGACCCT 59.085 50.000 0.00 0.00 43.65 4.34
4765 5473 2.118679 ACATGCTATGCAGTGACCCTA 58.881 47.619 0.00 0.00 43.65 3.53
4766 5474 2.505407 ACATGCTATGCAGTGACCCTAA 59.495 45.455 0.00 0.00 43.65 2.69
4767 5475 2.988010 TGCTATGCAGTGACCCTAAG 57.012 50.000 0.00 0.00 33.32 2.18
4768 5476 2.466846 TGCTATGCAGTGACCCTAAGA 58.533 47.619 0.00 0.00 33.32 2.10
4769 5477 2.837591 TGCTATGCAGTGACCCTAAGAA 59.162 45.455 0.00 0.00 33.32 2.52
4770 5478 3.263170 TGCTATGCAGTGACCCTAAGAAA 59.737 43.478 0.00 0.00 33.32 2.52
4771 5479 4.261801 GCTATGCAGTGACCCTAAGAAAA 58.738 43.478 0.00 0.00 0.00 2.29
4772 5480 4.700213 GCTATGCAGTGACCCTAAGAAAAA 59.300 41.667 0.00 0.00 0.00 1.94
4773 5481 5.392057 GCTATGCAGTGACCCTAAGAAAAAC 60.392 44.000 0.00 0.00 0.00 2.43
4774 5482 2.875933 TGCAGTGACCCTAAGAAAAACG 59.124 45.455 0.00 0.00 0.00 3.60
4775 5483 2.876550 GCAGTGACCCTAAGAAAAACGT 59.123 45.455 0.00 0.00 0.00 3.99
4776 5484 3.303791 GCAGTGACCCTAAGAAAAACGTG 60.304 47.826 0.00 0.00 0.00 4.49
4777 5485 3.875134 CAGTGACCCTAAGAAAAACGTGT 59.125 43.478 0.00 0.00 0.00 4.49
4778 5486 4.334481 CAGTGACCCTAAGAAAAACGTGTT 59.666 41.667 0.00 0.00 0.00 3.32
4779 5487 5.524646 CAGTGACCCTAAGAAAAACGTGTTA 59.475 40.000 0.00 0.00 0.00 2.41
4780 5488 6.204108 CAGTGACCCTAAGAAAAACGTGTTAT 59.796 38.462 0.00 0.00 0.00 1.89
4781 5489 6.204108 AGTGACCCTAAGAAAAACGTGTTATG 59.796 38.462 0.00 0.00 0.00 1.90
4782 5490 5.049267 TGACCCTAAGAAAAACGTGTTATGC 60.049 40.000 0.00 0.00 0.00 3.14
4783 5491 4.822896 ACCCTAAGAAAAACGTGTTATGCA 59.177 37.500 0.00 0.00 0.00 3.96
4790 5498 6.427150 AGAAAAACGTGTTATGCAGTGTAAG 58.573 36.000 0.00 0.00 0.00 2.34
4791 5499 4.742438 AAACGTGTTATGCAGTGTAAGG 57.258 40.909 0.00 0.00 0.00 2.69
4827 5535 5.617529 CGTCCGGTTTTCTGTTAATTAACCC 60.618 44.000 22.47 14.85 35.87 4.11
4840 5548 1.350071 TTAACCCGGCAACCACTCTA 58.650 50.000 0.00 0.00 0.00 2.43
4858 5566 0.742505 TACCTAGTCAACGCGATGGG 59.257 55.000 15.93 10.68 0.00 4.00
4881 5593 3.749609 GCAAAGCTTTTACCTCCGTCTAA 59.250 43.478 9.53 0.00 0.00 2.10
4882 5594 4.214758 GCAAAGCTTTTACCTCCGTCTAAA 59.785 41.667 9.53 0.00 0.00 1.85
4883 5595 5.278120 GCAAAGCTTTTACCTCCGTCTAAAA 60.278 40.000 9.53 0.00 0.00 1.52
4905 5617 5.705609 AAACATGAAAATCCTGCGTAAGT 57.294 34.783 0.00 0.00 41.68 2.24
4917 5629 6.598753 TCCTGCGTAAGTAAAGCAATTATC 57.401 37.500 0.00 0.00 40.63 1.75
4918 5630 5.526111 TCCTGCGTAAGTAAAGCAATTATCC 59.474 40.000 0.00 0.00 40.63 2.59
4919 5631 5.527582 CCTGCGTAAGTAAAGCAATTATCCT 59.472 40.000 0.00 0.00 40.63 3.24
4964 5699 1.822990 CTCCTTGATTGCCTTGCATGT 59.177 47.619 0.00 0.00 38.76 3.21
4971 5706 3.510753 TGATTGCCTTGCATGTACAACAT 59.489 39.130 0.00 0.00 39.91 2.71
4985 5720 0.728129 CAACATGTGCGCTGCTTCAG 60.728 55.000 9.73 0.00 34.12 3.02
5115 5851 0.178973 GCACACCACCCTTAACCCTT 60.179 55.000 0.00 0.00 0.00 3.95
5116 5852 1.905637 CACACCACCCTTAACCCTTC 58.094 55.000 0.00 0.00 0.00 3.46
5117 5853 1.423921 CACACCACCCTTAACCCTTCT 59.576 52.381 0.00 0.00 0.00 2.85
5118 5854 2.141067 ACACCACCCTTAACCCTTCTT 58.859 47.619 0.00 0.00 0.00 2.52
5119 5855 2.107726 ACACCACCCTTAACCCTTCTTC 59.892 50.000 0.00 0.00 0.00 2.87
5120 5856 1.709115 ACCACCCTTAACCCTTCTTCC 59.291 52.381 0.00 0.00 0.00 3.46
5121 5857 1.005569 CCACCCTTAACCCTTCTTCCC 59.994 57.143 0.00 0.00 0.00 3.97
5122 5858 1.005569 CACCCTTAACCCTTCTTCCCC 59.994 57.143 0.00 0.00 0.00 4.81
5123 5859 1.378732 CCCTTAACCCTTCTTCCCCA 58.621 55.000 0.00 0.00 0.00 4.96
5124 5860 1.930204 CCCTTAACCCTTCTTCCCCAT 59.070 52.381 0.00 0.00 0.00 4.00
5125 5861 2.314852 CCCTTAACCCTTCTTCCCCATT 59.685 50.000 0.00 0.00 0.00 3.16
5126 5862 3.627492 CCCTTAACCCTTCTTCCCCATTC 60.627 52.174 0.00 0.00 0.00 2.67
5127 5863 3.627492 CCTTAACCCTTCTTCCCCATTCC 60.627 52.174 0.00 0.00 0.00 3.01
5128 5864 0.710588 AACCCTTCTTCCCCATTCCC 59.289 55.000 0.00 0.00 0.00 3.97
5131 5881 1.342374 CCCTTCTTCCCCATTCCCTTG 60.342 57.143 0.00 0.00 0.00 3.61
5190 5941 3.119388 CCTAACTTAATCCGACCGTGACA 60.119 47.826 0.00 0.00 0.00 3.58
5224 5975 3.470567 CGAAGCGAGTCGGTGTGC 61.471 66.667 19.25 9.93 37.73 4.57
5225 5976 2.355837 GAAGCGAGTCGGTGTGCA 60.356 61.111 19.25 0.00 37.73 4.57
5226 5977 2.356313 AAGCGAGTCGGTGTGCAG 60.356 61.111 19.25 0.00 37.73 4.41
5227 5978 2.749110 GAAGCGAGTCGGTGTGCAGA 62.749 60.000 19.25 0.00 37.73 4.26
5228 5979 3.106407 GCGAGTCGGTGTGCAGAC 61.106 66.667 15.52 5.20 39.57 3.51
5229 5980 2.801162 CGAGTCGGTGTGCAGACG 60.801 66.667 8.03 3.02 43.11 4.18
5230 5981 3.106407 GAGTCGGTGTGCAGACGC 61.106 66.667 8.03 0.00 43.11 5.19
5258 6009 1.502640 GACGGTCTCTGTCTGTCGG 59.497 63.158 0.00 0.00 32.68 4.79
5279 6030 2.860735 GCATGATTATATCGCCGTCCTC 59.139 50.000 0.00 0.00 0.00 3.71
5280 6031 3.676049 GCATGATTATATCGCCGTCCTCA 60.676 47.826 0.00 0.00 0.00 3.86
5383 6142 1.601419 CTCCTCGGAACCAACGGCTA 61.601 60.000 0.00 0.00 0.00 3.93
5397 6156 1.227674 GGCTAGCGGATGGTTCCAG 60.228 63.158 9.00 0.00 42.74 3.86
5400 6159 0.249657 CTAGCGGATGGTTCCAGCTC 60.250 60.000 12.36 0.38 44.88 4.09
5429 6188 2.096013 GGCCAGCACTAGAAAAATCGTC 59.904 50.000 0.00 0.00 0.00 4.20
5437 6196 5.578727 GCACTAGAAAAATCGTCTCTGTCAT 59.421 40.000 0.00 0.00 0.00 3.06
5438 6197 6.454848 GCACTAGAAAAATCGTCTCTGTCATG 60.455 42.308 0.00 0.00 0.00 3.07
5439 6198 4.935885 AGAAAAATCGTCTCTGTCATGC 57.064 40.909 0.00 0.00 0.00 4.06
5440 6199 4.573900 AGAAAAATCGTCTCTGTCATGCT 58.426 39.130 0.00 0.00 0.00 3.79
5441 6200 4.629200 AGAAAAATCGTCTCTGTCATGCTC 59.371 41.667 0.00 0.00 0.00 4.26
5442 6201 2.593346 AATCGTCTCTGTCATGCTCC 57.407 50.000 0.00 0.00 0.00 4.70
5443 6202 0.749649 ATCGTCTCTGTCATGCTCCC 59.250 55.000 0.00 0.00 0.00 4.30
5444 6203 0.323816 TCGTCTCTGTCATGCTCCCT 60.324 55.000 0.00 0.00 0.00 4.20
5445 6204 0.102120 CGTCTCTGTCATGCTCCCTC 59.898 60.000 0.00 0.00 0.00 4.30
5446 6205 0.463620 GTCTCTGTCATGCTCCCTCC 59.536 60.000 0.00 0.00 0.00 4.30
5447 6206 1.039785 TCTCTGTCATGCTCCCTCCG 61.040 60.000 0.00 0.00 0.00 4.63
5448 6207 1.305297 TCTGTCATGCTCCCTCCGT 60.305 57.895 0.00 0.00 0.00 4.69
5449 6208 1.142748 CTGTCATGCTCCCTCCGTC 59.857 63.158 0.00 0.00 0.00 4.79
5450 6209 2.303549 CTGTCATGCTCCCTCCGTCC 62.304 65.000 0.00 0.00 0.00 4.79
5451 6210 2.060980 GTCATGCTCCCTCCGTCCT 61.061 63.158 0.00 0.00 0.00 3.85
5452 6211 0.755698 GTCATGCTCCCTCCGTCCTA 60.756 60.000 0.00 0.00 0.00 2.94
5453 6212 0.032515 TCATGCTCCCTCCGTCCTAA 60.033 55.000 0.00 0.00 0.00 2.69
5454 6213 0.830648 CATGCTCCCTCCGTCCTAAA 59.169 55.000 0.00 0.00 0.00 1.85
5455 6214 1.209504 CATGCTCCCTCCGTCCTAAAA 59.790 52.381 0.00 0.00 0.00 1.52
5456 6215 1.580059 TGCTCCCTCCGTCCTAAAAT 58.420 50.000 0.00 0.00 0.00 1.82
5457 6216 2.754465 TGCTCCCTCCGTCCTAAAATA 58.246 47.619 0.00 0.00 0.00 1.40
5458 6217 3.314693 TGCTCCCTCCGTCCTAAAATAT 58.685 45.455 0.00 0.00 0.00 1.28
5459 6218 4.485875 TGCTCCCTCCGTCCTAAAATATA 58.514 43.478 0.00 0.00 0.00 0.86
5460 6219 4.903049 TGCTCCCTCCGTCCTAAAATATAA 59.097 41.667 0.00 0.00 0.00 0.98
5461 6220 5.367352 TGCTCCCTCCGTCCTAAAATATAAA 59.633 40.000 0.00 0.00 0.00 1.40
5462 6221 6.043938 TGCTCCCTCCGTCCTAAAATATAAAT 59.956 38.462 0.00 0.00 0.00 1.40
5463 6222 7.236019 TGCTCCCTCCGTCCTAAAATATAAATA 59.764 37.037 0.00 0.00 0.00 1.40
5464 6223 8.265764 GCTCCCTCCGTCCTAAAATATAAATAT 58.734 37.037 0.00 0.00 0.00 1.28
5500 6259 8.942669 TTAACACTAGCATAATGTCAAAAACG 57.057 30.769 0.00 0.00 0.00 3.60
5501 6260 6.554334 ACACTAGCATAATGTCAAAAACGT 57.446 33.333 0.00 0.00 0.00 3.99
5502 6261 6.966021 ACACTAGCATAATGTCAAAAACGTT 58.034 32.000 0.00 0.00 40.28 3.99
5503 6262 7.422399 ACACTAGCATAATGTCAAAAACGTTT 58.578 30.769 7.96 7.96 38.14 3.60
5504 6263 7.918562 ACACTAGCATAATGTCAAAAACGTTTT 59.081 29.630 20.26 20.26 38.14 2.43
5505 6264 8.751335 CACTAGCATAATGTCAAAAACGTTTTT 58.249 29.630 28.62 28.62 40.75 1.94
5506 6265 9.953697 ACTAGCATAATGTCAAAAACGTTTTTA 57.046 25.926 32.12 20.75 38.23 1.52
5515 6274 8.804688 TGTCAAAAACGTTTTTATATTCTGGG 57.195 30.769 32.12 19.25 38.23 4.45
5516 6275 8.630917 TGTCAAAAACGTTTTTATATTCTGGGA 58.369 29.630 32.12 20.87 38.23 4.37
5517 6276 9.634163 GTCAAAAACGTTTTTATATTCTGGGAT 57.366 29.630 32.12 8.97 38.23 3.85
5522 6281 8.904099 AACGTTTTTATATTCTGGGATAGAGG 57.096 34.615 0.00 0.00 36.61 3.69
5523 6282 7.450903 ACGTTTTTATATTCTGGGATAGAGGG 58.549 38.462 0.00 0.00 36.61 4.30
5524 6283 7.291651 ACGTTTTTATATTCTGGGATAGAGGGA 59.708 37.037 0.00 0.00 36.61 4.20
5525 6284 7.819900 CGTTTTTATATTCTGGGATAGAGGGAG 59.180 40.741 0.00 0.00 36.61 4.30
5526 6285 8.661345 GTTTTTATATTCTGGGATAGAGGGAGT 58.339 37.037 0.00 0.00 36.61 3.85
5527 6286 9.907819 TTTTTATATTCTGGGATAGAGGGAGTA 57.092 33.333 0.00 0.00 36.61 2.59
5528 6287 9.548631 TTTTATATTCTGGGATAGAGGGAGTAG 57.451 37.037 0.00 0.00 36.61 2.57
5529 6288 6.744802 ATATTCTGGGATAGAGGGAGTAGT 57.255 41.667 0.00 0.00 36.61 2.73
5530 6289 4.901785 TTCTGGGATAGAGGGAGTAGTT 57.098 45.455 0.00 0.00 36.61 2.24
5531 6290 4.901785 TCTGGGATAGAGGGAGTAGTTT 57.098 45.455 0.00 0.00 0.00 2.66
5532 6291 5.222278 TCTGGGATAGAGGGAGTAGTTTT 57.778 43.478 0.00 0.00 0.00 2.43
5533 6292 5.600749 TCTGGGATAGAGGGAGTAGTTTTT 58.399 41.667 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.065510 GTGAGTCGCTGATAGCTGTTAGA 59.934 47.826 6.43 0.00 39.60 2.10
13 14 0.613292 ACCCTGAGTGAGTCGCTGAT 60.613 55.000 11.81 0.00 0.00 2.90
28 29 5.600484 TCATTTTGTGGTGAATGTTTACCCT 59.400 36.000 4.49 0.00 36.10 4.34
76 77 2.524440 TGGATCTAGGAGGTCCTTGGAT 59.476 50.000 3.25 8.59 46.09 3.41
104 105 0.391130 GGCGTGTCAGGTATGCTTCA 60.391 55.000 0.00 0.00 0.00 3.02
230 247 2.366916 GGGTGAGGATGTGGAGTATGAG 59.633 54.545 0.00 0.00 0.00 2.90
246 263 0.036388 GAGCCGTTTGATCAGGGTGA 60.036 55.000 8.76 0.00 35.70 4.02
321 338 0.396811 GCTTGTGGTGGTGTAGAGGT 59.603 55.000 0.00 0.00 0.00 3.85
330 347 1.480137 TGTTCCTTTTGCTTGTGGTGG 59.520 47.619 0.00 0.00 0.00 4.61
351 368 6.846350 AGTACGTATTTGTGTAGGTAGTGAC 58.154 40.000 0.00 0.00 31.16 3.67
428 452 4.319177 CGGTATTGAATCCCCTCTTGATC 58.681 47.826 0.00 0.00 0.00 2.92
440 464 3.873910 CACCAGTTCTCCGGTATTGAAT 58.126 45.455 0.00 0.00 32.98 2.57
490 517 2.585153 GAAGAAGGTCTCCGGGGC 59.415 66.667 0.00 0.00 0.00 5.80
543 570 4.802051 TCCGGGGACTACGACGGG 62.802 72.222 0.00 0.00 45.97 5.28
643 670 1.100510 TACACGAGGCACGAGCTATT 58.899 50.000 12.15 0.00 45.77 1.73
644 671 0.381089 GTACACGAGGCACGAGCTAT 59.619 55.000 12.15 0.00 45.77 2.97
645 672 1.651240 GGTACACGAGGCACGAGCTA 61.651 60.000 12.15 0.00 45.77 3.32
770 822 3.402709 ACCAATTAGGCCCACGAGTGG 62.403 57.143 14.99 14.99 45.22 4.00
776 828 2.119029 GCCGACCAATTAGGCCCAC 61.119 63.158 0.00 0.00 44.80 4.61
850 923 1.522355 CAGCCCACGATGCGAATCT 60.522 57.895 0.96 0.00 0.00 2.40
1182 1279 2.250188 CAGCAAAGTAAATTTCGCGGG 58.750 47.619 6.13 0.00 33.12 6.13
1266 1363 2.972021 AGGCCAGTTTATTTTTGTGCCT 59.028 40.909 5.01 0.00 42.87 4.75
1278 1375 4.223144 AGAACCAAATTACAGGCCAGTTT 58.777 39.130 5.94 0.00 0.00 2.66
1288 1385 5.705609 TCTTGAGGCAAGAACCAAATTAC 57.294 39.130 7.36 0.00 45.84 1.89
1298 1395 2.329267 TCCTGACTTCTTGAGGCAAGA 58.671 47.619 5.81 5.81 44.69 3.02
1299 1396 2.847327 TCCTGACTTCTTGAGGCAAG 57.153 50.000 0.84 0.84 44.69 4.01
1300 1397 3.369892 GCTATCCTGACTTCTTGAGGCAA 60.370 47.826 0.00 0.00 44.69 4.52
1301 1398 2.169352 GCTATCCTGACTTCTTGAGGCA 59.831 50.000 0.00 0.00 42.61 4.75
1302 1399 2.433970 AGCTATCCTGACTTCTTGAGGC 59.566 50.000 0.00 0.00 0.00 4.70
1303 1400 3.450457 ACAGCTATCCTGACTTCTTGAGG 59.550 47.826 0.00 0.00 44.64 3.86
1304 1401 4.081752 ACACAGCTATCCTGACTTCTTGAG 60.082 45.833 0.00 0.00 44.64 3.02
1305 1402 3.834813 ACACAGCTATCCTGACTTCTTGA 59.165 43.478 0.00 0.00 44.64 3.02
1306 1403 3.931468 CACACAGCTATCCTGACTTCTTG 59.069 47.826 0.00 0.00 44.64 3.02
1307 1404 3.055530 CCACACAGCTATCCTGACTTCTT 60.056 47.826 0.00 0.00 44.64 2.52
1308 1405 2.499289 CCACACAGCTATCCTGACTTCT 59.501 50.000 0.00 0.00 44.64 2.85
1309 1406 2.234908 ACCACACAGCTATCCTGACTTC 59.765 50.000 0.00 0.00 44.64 3.01
1310 1407 2.027745 CACCACACAGCTATCCTGACTT 60.028 50.000 0.00 0.00 44.64 3.01
1311 1408 1.552337 CACCACACAGCTATCCTGACT 59.448 52.381 0.00 0.00 44.64 3.41
1312 1409 1.406069 CCACCACACAGCTATCCTGAC 60.406 57.143 0.00 0.00 44.64 3.51
1313 1410 0.904649 CCACCACACAGCTATCCTGA 59.095 55.000 0.00 0.00 44.64 3.86
1315 1412 1.274703 CCCCACCACACAGCTATCCT 61.275 60.000 0.00 0.00 0.00 3.24
1316 1413 1.224592 CCCCACCACACAGCTATCC 59.775 63.158 0.00 0.00 0.00 2.59
1317 1414 1.224592 CCCCCACCACACAGCTATC 59.775 63.158 0.00 0.00 0.00 2.08
1318 1415 3.415186 CCCCCACCACACAGCTAT 58.585 61.111 0.00 0.00 0.00 2.97
1332 1429 1.303643 CAGAGCACAGGAAACCCCC 60.304 63.158 0.00 0.00 34.66 5.40
1333 1430 0.606673 GACAGAGCACAGGAAACCCC 60.607 60.000 0.00 0.00 0.00 4.95
1334 1431 0.398318 AGACAGAGCACAGGAAACCC 59.602 55.000 0.00 0.00 0.00 4.11
1335 1432 1.346068 AGAGACAGAGCACAGGAAACC 59.654 52.381 0.00 0.00 0.00 3.27
1336 1433 2.298729 AGAGAGACAGAGCACAGGAAAC 59.701 50.000 0.00 0.00 0.00 2.78
1337 1434 2.298446 CAGAGAGACAGAGCACAGGAAA 59.702 50.000 0.00 0.00 0.00 3.13
1338 1435 1.891811 CAGAGAGACAGAGCACAGGAA 59.108 52.381 0.00 0.00 0.00 3.36
1339 1436 1.202989 ACAGAGAGACAGAGCACAGGA 60.203 52.381 0.00 0.00 0.00 3.86
1340 1437 1.255882 ACAGAGAGACAGAGCACAGG 58.744 55.000 0.00 0.00 0.00 4.00
1341 1438 3.383620 AAACAGAGAGACAGAGCACAG 57.616 47.619 0.00 0.00 0.00 3.66
1342 1439 3.132824 TCAAAACAGAGAGACAGAGCACA 59.867 43.478 0.00 0.00 0.00 4.57
1343 1440 3.722147 TCAAAACAGAGAGACAGAGCAC 58.278 45.455 0.00 0.00 0.00 4.40
1344 1441 4.406648 TTCAAAACAGAGAGACAGAGCA 57.593 40.909 0.00 0.00 0.00 4.26
1345 1442 5.938438 AATTCAAAACAGAGAGACAGAGC 57.062 39.130 0.00 0.00 0.00 4.09
1346 1443 9.823098 CATTTAATTCAAAACAGAGAGACAGAG 57.177 33.333 0.00 0.00 0.00 3.35
1347 1444 9.342308 ACATTTAATTCAAAACAGAGAGACAGA 57.658 29.630 0.00 0.00 0.00 3.41
1348 1445 9.956720 AACATTTAATTCAAAACAGAGAGACAG 57.043 29.630 0.00 0.00 0.00 3.51
1349 1446 9.734620 CAACATTTAATTCAAAACAGAGAGACA 57.265 29.630 0.00 0.00 0.00 3.41
1350 1447 8.694394 GCAACATTTAATTCAAAACAGAGAGAC 58.306 33.333 0.00 0.00 0.00 3.36
1351 1448 8.632679 AGCAACATTTAATTCAAAACAGAGAGA 58.367 29.630 0.00 0.00 0.00 3.10
1352 1449 8.697067 CAGCAACATTTAATTCAAAACAGAGAG 58.303 33.333 0.00 0.00 0.00 3.20
1353 1450 8.196771 ACAGCAACATTTAATTCAAAACAGAGA 58.803 29.630 0.00 0.00 0.00 3.10
1354 1451 8.356533 ACAGCAACATTTAATTCAAAACAGAG 57.643 30.769 0.00 0.00 0.00 3.35
1355 1452 8.715191 AACAGCAACATTTAATTCAAAACAGA 57.285 26.923 0.00 0.00 0.00 3.41
1356 1453 9.771915 AAAACAGCAACATTTAATTCAAAACAG 57.228 25.926 0.00 0.00 0.00 3.16
1357 1454 9.552114 CAAAACAGCAACATTTAATTCAAAACA 57.448 25.926 0.00 0.00 0.00 2.83
1358 1455 9.766277 TCAAAACAGCAACATTTAATTCAAAAC 57.234 25.926 0.00 0.00 0.00 2.43
1366 1463 9.907576 CGTTTAATTCAAAACAGCAACATTTAA 57.092 25.926 5.04 0.00 38.93 1.52
1367 1464 9.302345 TCGTTTAATTCAAAACAGCAACATTTA 57.698 25.926 5.04 0.00 38.93 1.40
1368 1465 8.113675 GTCGTTTAATTCAAAACAGCAACATTT 58.886 29.630 5.04 0.00 38.93 2.32
1369 1466 7.254286 GGTCGTTTAATTCAAAACAGCAACATT 60.254 33.333 5.04 0.00 38.93 2.71
1370 1467 6.200097 GGTCGTTTAATTCAAAACAGCAACAT 59.800 34.615 5.04 0.00 38.93 2.71
1371 1468 5.517054 GGTCGTTTAATTCAAAACAGCAACA 59.483 36.000 5.04 0.00 38.93 3.33
1372 1469 5.051307 GGGTCGTTTAATTCAAAACAGCAAC 60.051 40.000 5.04 0.00 38.93 4.17
1373 1470 5.044558 GGGTCGTTTAATTCAAAACAGCAA 58.955 37.500 5.04 0.00 38.93 3.91
1374 1471 4.612943 GGGTCGTTTAATTCAAAACAGCA 58.387 39.130 5.04 0.00 38.93 4.41
1375 1472 3.666797 CGGGTCGTTTAATTCAAAACAGC 59.333 43.478 5.04 2.57 38.93 4.40
1376 1473 3.666797 GCGGGTCGTTTAATTCAAAACAG 59.333 43.478 5.04 0.00 38.93 3.16
1377 1474 3.630101 GCGGGTCGTTTAATTCAAAACA 58.370 40.909 5.04 0.00 38.93 2.83
1378 1475 2.653113 CGCGGGTCGTTTAATTCAAAAC 59.347 45.455 0.00 0.00 36.26 2.43
1379 1476 2.547211 TCGCGGGTCGTTTAATTCAAAA 59.453 40.909 6.13 0.00 39.67 2.44
1380 1477 2.141517 TCGCGGGTCGTTTAATTCAAA 58.858 42.857 6.13 0.00 39.67 2.69
1381 1478 1.793258 TCGCGGGTCGTTTAATTCAA 58.207 45.000 6.13 0.00 39.67 2.69
1382 1479 1.793258 TTCGCGGGTCGTTTAATTCA 58.207 45.000 6.13 0.00 39.67 2.57
1383 1480 2.878906 TTTCGCGGGTCGTTTAATTC 57.121 45.000 6.13 0.00 39.67 2.17
1384 1481 3.004862 AGATTTCGCGGGTCGTTTAATT 58.995 40.909 6.13 0.00 39.67 1.40
1385 1482 2.624636 AGATTTCGCGGGTCGTTTAAT 58.375 42.857 6.13 0.00 39.67 1.40
1386 1483 2.083167 AGATTTCGCGGGTCGTTTAA 57.917 45.000 6.13 0.00 39.67 1.52
1387 1484 2.164219 AGTAGATTTCGCGGGTCGTTTA 59.836 45.455 6.13 0.00 39.67 2.01
1388 1485 1.067354 AGTAGATTTCGCGGGTCGTTT 60.067 47.619 6.13 0.00 39.67 3.60
1389 1486 0.529378 AGTAGATTTCGCGGGTCGTT 59.471 50.000 6.13 0.00 39.67 3.85
1390 1487 0.529378 AAGTAGATTTCGCGGGTCGT 59.471 50.000 6.13 0.00 39.67 4.34
1391 1488 1.323534 CAAAGTAGATTTCGCGGGTCG 59.676 52.381 6.13 0.00 40.15 4.79
1392 1489 1.062148 GCAAAGTAGATTTCGCGGGTC 59.938 52.381 6.13 1.86 0.00 4.46
1393 1490 1.084289 GCAAAGTAGATTTCGCGGGT 58.916 50.000 6.13 0.00 0.00 5.28
1394 1491 1.062587 CAGCAAAGTAGATTTCGCGGG 59.937 52.381 6.13 0.00 33.12 6.13
1395 1492 1.529826 GCAGCAAAGTAGATTTCGCGG 60.530 52.381 6.13 0.00 33.12 6.46
1396 1493 1.394917 AGCAGCAAAGTAGATTTCGCG 59.605 47.619 0.00 0.00 33.12 5.87
1397 1494 2.778659 CAGCAGCAAAGTAGATTTCGC 58.221 47.619 0.00 0.00 0.00 4.70
1398 1495 2.417933 AGCAGCAGCAAAGTAGATTTCG 59.582 45.455 3.17 0.00 45.49 3.46
1399 1496 3.181502 GGAGCAGCAGCAAAGTAGATTTC 60.182 47.826 3.17 0.00 45.49 2.17
1400 1497 2.751806 GGAGCAGCAGCAAAGTAGATTT 59.248 45.455 3.17 0.00 45.49 2.17
1401 1498 2.026449 AGGAGCAGCAGCAAAGTAGATT 60.026 45.455 3.17 0.00 45.49 2.40
1402 1499 1.558756 AGGAGCAGCAGCAAAGTAGAT 59.441 47.619 3.17 0.00 45.49 1.98
1403 1500 0.979665 AGGAGCAGCAGCAAAGTAGA 59.020 50.000 3.17 0.00 45.49 2.59
1404 1501 1.085091 CAGGAGCAGCAGCAAAGTAG 58.915 55.000 3.17 0.00 45.49 2.57
1405 1502 0.397941 ACAGGAGCAGCAGCAAAGTA 59.602 50.000 3.17 0.00 45.49 2.24
1406 1503 1.150081 ACAGGAGCAGCAGCAAAGT 59.850 52.632 3.17 0.00 45.49 2.66
1407 1504 1.579932 CACAGGAGCAGCAGCAAAG 59.420 57.895 3.17 0.00 45.49 2.77
1408 1505 2.558286 GCACAGGAGCAGCAGCAAA 61.558 57.895 3.17 0.00 45.49 3.68
1409 1506 2.981909 GCACAGGAGCAGCAGCAA 60.982 61.111 3.17 0.00 45.49 3.91
1412 1509 4.694233 ACCGCACAGGAGCAGCAG 62.694 66.667 0.00 0.00 45.00 4.24
1413 1510 4.994471 CACCGCACAGGAGCAGCA 62.994 66.667 0.00 0.00 45.00 4.41
1414 1511 3.965539 ATCACCGCACAGGAGCAGC 62.966 63.158 0.00 0.00 45.00 5.25
1415 1512 1.376424 AATCACCGCACAGGAGCAG 60.376 57.895 0.00 0.00 45.00 4.24
1416 1513 1.672030 CAATCACCGCACAGGAGCA 60.672 57.895 0.00 0.00 45.00 4.26
1417 1514 0.391130 TACAATCACCGCACAGGAGC 60.391 55.000 0.00 0.00 45.00 4.70
1418 1515 1.359848 GTACAATCACCGCACAGGAG 58.640 55.000 0.00 0.00 45.00 3.69
1419 1516 0.389296 CGTACAATCACCGCACAGGA 60.389 55.000 0.00 0.00 45.00 3.86
1421 1518 1.640428 ATCGTACAATCACCGCACAG 58.360 50.000 0.00 0.00 0.00 3.66
1422 1519 1.996898 GAATCGTACAATCACCGCACA 59.003 47.619 0.00 0.00 0.00 4.57
1423 1520 1.006391 CGAATCGTACAATCACCGCAC 60.006 52.381 0.00 0.00 0.00 5.34
1424 1521 1.273688 CGAATCGTACAATCACCGCA 58.726 50.000 0.00 0.00 0.00 5.69
1425 1522 0.575390 CCGAATCGTACAATCACCGC 59.425 55.000 0.82 0.00 0.00 5.68
1479 1583 1.912043 ACTCTGTGCCTAAATCAGCCT 59.088 47.619 0.00 0.00 0.00 4.58
1482 1586 5.352569 CCTAAACACTCTGTGCCTAAATCAG 59.647 44.000 0.00 0.00 36.98 2.90
1495 1599 3.117663 TCAAGCAAACCCCTAAACACTCT 60.118 43.478 0.00 0.00 0.00 3.24
1496 1600 3.219281 TCAAGCAAACCCCTAAACACTC 58.781 45.455 0.00 0.00 0.00 3.51
1498 1602 4.600692 AATCAAGCAAACCCCTAAACAC 57.399 40.909 0.00 0.00 0.00 3.32
1499 1603 4.651503 TCAAATCAAGCAAACCCCTAAACA 59.348 37.500 0.00 0.00 0.00 2.83
1500 1604 5.010617 TCTCAAATCAAGCAAACCCCTAAAC 59.989 40.000 0.00 0.00 0.00 2.01
1503 1613 4.079253 GTCTCAAATCAAGCAAACCCCTA 58.921 43.478 0.00 0.00 0.00 3.53
1509 1619 2.956132 TGGGGTCTCAAATCAAGCAAA 58.044 42.857 0.00 0.00 0.00 3.68
1513 1623 3.127548 CGTTGATGGGGTCTCAAATCAAG 59.872 47.826 1.32 0.00 39.14 3.02
1519 1629 0.605319 GCACGTTGATGGGGTCTCAA 60.605 55.000 0.00 0.00 0.00 3.02
1523 1633 0.036765 TGTAGCACGTTGATGGGGTC 60.037 55.000 0.00 0.00 0.00 4.46
1524 1634 0.618458 ATGTAGCACGTTGATGGGGT 59.382 50.000 0.00 0.00 0.00 4.95
1525 1635 1.016627 CATGTAGCACGTTGATGGGG 58.983 55.000 0.00 0.00 0.00 4.96
1529 1647 4.829064 AAACAACATGTAGCACGTTGAT 57.171 36.364 13.72 0.69 42.03 2.57
1531 1649 6.303022 CAGATAAAACAACATGTAGCACGTTG 59.697 38.462 0.00 6.54 44.38 4.10
1541 1659 8.542132 CCAAGAAAACACAGATAAAACAACATG 58.458 33.333 0.00 0.00 0.00 3.21
1550 1668 5.070001 CCAGTCCCAAGAAAACACAGATAA 58.930 41.667 0.00 0.00 0.00 1.75
1552 1670 3.490348 CCAGTCCCAAGAAAACACAGAT 58.510 45.455 0.00 0.00 0.00 2.90
1557 1675 0.555769 AGCCCAGTCCCAAGAAAACA 59.444 50.000 0.00 0.00 0.00 2.83
1562 1680 2.038863 TTTCTAGCCCAGTCCCAAGA 57.961 50.000 0.00 0.00 0.00 3.02
1565 1683 3.850173 AGTTAATTTCTAGCCCAGTCCCA 59.150 43.478 0.00 0.00 0.00 4.37
1566 1684 4.200092 CAGTTAATTTCTAGCCCAGTCCC 58.800 47.826 0.00 0.00 0.00 4.46
1581 1699 7.833285 ACAACCAAATTACAGACCAGTTAAT 57.167 32.000 0.00 0.00 0.00 1.40
1582 1700 7.484975 CAACAACCAAATTACAGACCAGTTAA 58.515 34.615 0.00 0.00 0.00 2.01
1585 1703 4.202111 GCAACAACCAAATTACAGACCAGT 60.202 41.667 0.00 0.00 0.00 4.00
1586 1704 4.298332 GCAACAACCAAATTACAGACCAG 58.702 43.478 0.00 0.00 0.00 4.00
1649 1770 1.203523 AGAGAGATGAGCACACGAACC 59.796 52.381 0.00 0.00 0.00 3.62
1650 1771 2.257894 CAGAGAGATGAGCACACGAAC 58.742 52.381 0.00 0.00 0.00 3.95
1662 1783 4.704057 GCATTTCCCTCAAAACAGAGAGAT 59.296 41.667 0.00 0.00 37.87 2.75
1685 1818 4.917415 GGCACAACATTTTAACTACAGCAG 59.083 41.667 0.00 0.00 0.00 4.24
1705 1838 3.156293 ACTCAAGCACAAATGTATGGCA 58.844 40.909 0.00 0.00 0.00 4.92
1707 1840 4.218200 TCCAACTCAAGCACAAATGTATGG 59.782 41.667 0.00 0.00 0.00 2.74
1708 1841 5.375417 TCCAACTCAAGCACAAATGTATG 57.625 39.130 0.00 0.00 0.00 2.39
1709 1842 5.536161 AGTTCCAACTCAAGCACAAATGTAT 59.464 36.000 0.00 0.00 32.86 2.29
1710 1843 4.887071 AGTTCCAACTCAAGCACAAATGTA 59.113 37.500 0.00 0.00 32.86 2.29
1711 1844 3.701040 AGTTCCAACTCAAGCACAAATGT 59.299 39.130 0.00 0.00 32.86 2.71
1783 1943 4.044191 AGTGCCCTTTTTATCACCCTTAGT 59.956 41.667 0.00 0.00 0.00 2.24
1784 1944 4.399303 CAGTGCCCTTTTTATCACCCTTAG 59.601 45.833 0.00 0.00 0.00 2.18
1785 1945 4.340617 CAGTGCCCTTTTTATCACCCTTA 58.659 43.478 0.00 0.00 0.00 2.69
1786 1946 3.165071 CAGTGCCCTTTTTATCACCCTT 58.835 45.455 0.00 0.00 0.00 3.95
1787 1947 2.807676 CAGTGCCCTTTTTATCACCCT 58.192 47.619 0.00 0.00 0.00 4.34
1905 2296 1.114627 AGCGATCTACTGATGCCACA 58.885 50.000 0.00 0.00 32.19 4.17
1912 2305 1.892209 TCGGCATAGCGATCTACTGA 58.108 50.000 0.00 0.00 0.00 3.41
1930 2365 0.246360 CGGCACCCCTTTTGGAATTC 59.754 55.000 0.00 0.00 44.07 2.17
1948 2383 5.567138 AAGAATTTCCTTCTGTTATGGCG 57.433 39.130 0.00 0.00 43.60 5.69
1976 2411 7.043458 ACACGTGTTTGCAGATTAATTCAAAAG 60.043 33.333 17.22 9.02 31.29 2.27
2006 2441 3.904136 AGCAAGTCAGTAACAATGCAC 57.096 42.857 0.00 0.00 42.32 4.57
2052 2487 8.200120 TGTAGAAGACATTACTCATCCAAGATG 58.800 37.037 0.00 0.00 31.20 2.90
2090 2525 3.989817 CCTGCAGTTTGAAATAAACAGGC 59.010 43.478 13.81 8.23 35.05 4.85
2119 2554 5.481824 TCCTGCAAGAATCTTCAAGAGAGTA 59.518 40.000 0.00 0.00 34.52 2.59
2209 2644 0.884704 GGTCACCACTGCACACGAAT 60.885 55.000 0.00 0.00 0.00 3.34
2248 2683 2.367241 TGAACTGACATTCCGACTCCAA 59.633 45.455 0.00 0.00 0.00 3.53
2279 2714 6.544564 TCTTACAACAAGTAAACAAAGAGGGG 59.455 38.462 0.00 0.00 41.89 4.79
2333 2768 5.008415 CGACTCCACGAACCACTATATTAGT 59.992 44.000 0.00 0.00 35.88 2.24
2334 2769 5.450171 CGACTCCACGAACCACTATATTAG 58.550 45.833 0.00 0.00 35.09 1.73
2335 2770 4.276678 CCGACTCCACGAACCACTATATTA 59.723 45.833 0.00 0.00 35.09 0.98
2336 2771 3.067742 CCGACTCCACGAACCACTATATT 59.932 47.826 0.00 0.00 35.09 1.28
2337 2772 2.621998 CCGACTCCACGAACCACTATAT 59.378 50.000 0.00 0.00 35.09 0.86
2338 2773 2.019249 CCGACTCCACGAACCACTATA 58.981 52.381 0.00 0.00 35.09 1.31
2339 2774 0.815734 CCGACTCCACGAACCACTAT 59.184 55.000 0.00 0.00 35.09 2.12
2340 2775 0.250858 TCCGACTCCACGAACCACTA 60.251 55.000 0.00 0.00 35.09 2.74
2341 2776 1.111116 TTCCGACTCCACGAACCACT 61.111 55.000 0.00 0.00 35.09 4.00
2342 2777 0.037605 ATTCCGACTCCACGAACCAC 60.038 55.000 0.00 0.00 35.09 4.16
2343 2778 0.037697 CATTCCGACTCCACGAACCA 60.038 55.000 0.00 0.00 35.09 3.67
2344 2779 0.245539 TCATTCCGACTCCACGAACC 59.754 55.000 0.00 0.00 35.09 3.62
2345 2780 2.295253 ATCATTCCGACTCCACGAAC 57.705 50.000 0.00 0.00 35.09 3.95
2346 2781 2.232696 TGAATCATTCCGACTCCACGAA 59.767 45.455 0.00 0.00 35.09 3.85
2347 2782 1.822371 TGAATCATTCCGACTCCACGA 59.178 47.619 0.00 0.00 35.09 4.35
2348 2783 1.927174 GTGAATCATTCCGACTCCACG 59.073 52.381 0.00 0.00 0.00 4.94
2349 2784 3.252974 AGTGAATCATTCCGACTCCAC 57.747 47.619 0.00 0.00 0.00 4.02
2350 2785 4.649218 TGATAGTGAATCATTCCGACTCCA 59.351 41.667 0.00 0.00 39.77 3.86
2351 2786 5.201713 TGATAGTGAATCATTCCGACTCC 57.798 43.478 0.00 0.00 39.77 3.85
2352 2787 6.703607 ACATTGATAGTGAATCATTCCGACTC 59.296 38.462 0.00 0.00 44.13 3.36
2353 2788 6.586344 ACATTGATAGTGAATCATTCCGACT 58.414 36.000 0.00 0.00 44.13 4.18
2354 2789 6.851222 ACATTGATAGTGAATCATTCCGAC 57.149 37.500 0.00 0.00 44.13 4.79
2355 2790 7.679400 GCAAACATTGATAGTGAATCATTCCGA 60.679 37.037 0.00 0.00 44.13 4.55
2356 2791 6.415867 GCAAACATTGATAGTGAATCATTCCG 59.584 38.462 0.00 0.00 44.13 4.30
2357 2792 6.415867 CGCAAACATTGATAGTGAATCATTCC 59.584 38.462 0.00 0.00 44.13 3.01
2358 2793 6.968904 ACGCAAACATTGATAGTGAATCATTC 59.031 34.615 0.00 0.00 44.13 2.67
2359 2794 6.855836 ACGCAAACATTGATAGTGAATCATT 58.144 32.000 0.00 0.00 44.13 2.57
2360 2795 6.441093 ACGCAAACATTGATAGTGAATCAT 57.559 33.333 0.00 0.00 44.13 2.45
2361 2796 5.878332 ACGCAAACATTGATAGTGAATCA 57.122 34.783 0.00 0.00 43.03 2.57
2362 2797 7.426456 CAGTTACGCAAACATTGATAGTGAATC 59.574 37.037 4.30 0.00 40.83 2.52
2363 2798 7.119116 TCAGTTACGCAAACATTGATAGTGAAT 59.881 33.333 4.30 0.00 40.83 2.57
2373 2808 4.503741 AATGCTCAGTTACGCAAACATT 57.496 36.364 4.30 0.00 40.83 2.71
2429 2864 7.905265 TGAATTAAAAATTGCTCCCATGAGAA 58.095 30.769 0.00 0.00 41.42 2.87
2504 2939 2.678190 GCACCCTAGAACATCCACAGAC 60.678 54.545 0.00 0.00 0.00 3.51
2508 2943 2.027192 TCAAGCACCCTAGAACATCCAC 60.027 50.000 0.00 0.00 0.00 4.02
2510 2945 2.237392 AGTCAAGCACCCTAGAACATCC 59.763 50.000 0.00 0.00 0.00 3.51
2514 2949 3.402628 TTGAGTCAAGCACCCTAGAAC 57.597 47.619 0.08 0.00 0.00 3.01
2520 2955 4.035675 GCTACAATATTGAGTCAAGCACCC 59.964 45.833 22.16 0.00 0.00 4.61
2532 2967 5.746307 ATGTCACTGCAGCTACAATATTG 57.254 39.130 21.48 14.01 0.00 1.90
2649 3108 5.336213 CCATTGCTCTGACAAATAAAGCACT 60.336 40.000 0.00 0.00 42.26 4.40
2698 3157 4.118168 AGTGGAACATCACCCTGAAAAT 57.882 40.909 0.00 0.00 44.52 1.82
2807 3266 5.771666 ACACATTATTGCTTCCATCCATAGG 59.228 40.000 0.00 0.00 0.00 2.57
3061 3537 2.445145 TCATGGTTCAGGGTGGAGAAAA 59.555 45.455 0.00 0.00 0.00 2.29
3077 3553 0.033796 ACCCCATCAACTGCTCATGG 60.034 55.000 0.00 0.00 37.42 3.66
3311 3787 9.507329 AGAAACAAGTATCTAATCAAGAAGCAA 57.493 29.630 0.00 0.00 37.89 3.91
3422 3898 2.115427 ACCCAAACAAGGACCCTTTTG 58.885 47.619 0.00 2.81 33.42 2.44
3423 3899 2.115427 CACCCAAACAAGGACCCTTTT 58.885 47.619 0.00 0.00 33.42 2.27
3424 3900 1.007842 ACACCCAAACAAGGACCCTTT 59.992 47.619 0.00 0.00 33.42 3.11
3427 3903 2.368311 TTACACCCAAACAAGGACCC 57.632 50.000 0.00 0.00 0.00 4.46
3430 3906 5.556915 CACTAGATTACACCCAAACAAGGA 58.443 41.667 0.00 0.00 0.00 3.36
3431 3907 4.156008 GCACTAGATTACACCCAAACAAGG 59.844 45.833 0.00 0.00 0.00 3.61
3432 3908 4.759693 TGCACTAGATTACACCCAAACAAG 59.240 41.667 0.00 0.00 0.00 3.16
3466 3947 1.560611 TGATCACTGATCATGTGGCCA 59.439 47.619 16.44 0.00 43.11 5.36
3467 3948 2.336945 TGATCACTGATCATGTGGCC 57.663 50.000 16.44 0.00 43.11 5.36
3566 4047 0.955919 GTTTCTTGGGTCGCTGAGGG 60.956 60.000 0.00 0.00 0.00 4.30
3614 4095 8.383619 CCAATGAAGTTTCTACTATTCTTCACG 58.616 37.037 7.83 3.76 44.20 4.35
3749 4347 0.105778 TGCACATTGACTCGACACCA 59.894 50.000 0.00 0.00 0.00 4.17
3754 4352 1.405933 CCCATCTGCACATTGACTCGA 60.406 52.381 0.00 0.00 0.00 4.04
3787 4385 6.775088 TCTTTGTCAATGCGAATTAGCTAAG 58.225 36.000 12.54 0.00 38.13 2.18
3802 4400 7.891183 TGGGCTATATAAACCTTTCTTTGTCAA 59.109 33.333 4.52 0.00 0.00 3.18
3803 4401 7.406916 TGGGCTATATAAACCTTTCTTTGTCA 58.593 34.615 4.52 0.00 0.00 3.58
3804 4402 7.556635 ACTGGGCTATATAAACCTTTCTTTGTC 59.443 37.037 4.52 0.00 0.00 3.18
3805 4403 7.410991 ACTGGGCTATATAAACCTTTCTTTGT 58.589 34.615 4.52 0.00 0.00 2.83
3806 4404 7.881775 ACTGGGCTATATAAACCTTTCTTTG 57.118 36.000 4.52 0.00 0.00 2.77
3939 4550 5.277974 CCTGTATTGGCATCGGATGTTTTAG 60.278 44.000 18.54 8.61 0.00 1.85
4040 4653 2.698855 AATCTGTTACCTGCTCGCAT 57.301 45.000 0.00 0.00 0.00 4.73
4057 4670 4.221482 GGGAAAGGAAGCATGAACTGAAAT 59.779 41.667 0.00 0.00 0.00 2.17
4069 4682 1.064389 AGTATGGCTGGGAAAGGAAGC 60.064 52.381 0.00 0.00 36.17 3.86
4072 4685 3.333680 AGAAAAGTATGGCTGGGAAAGGA 59.666 43.478 0.00 0.00 0.00 3.36
4078 4691 3.181483 GCAATCAGAAAAGTATGGCTGGG 60.181 47.826 0.00 0.00 0.00 4.45
4079 4692 3.444742 TGCAATCAGAAAAGTATGGCTGG 59.555 43.478 0.00 0.00 0.00 4.85
4080 4693 4.707030 TGCAATCAGAAAAGTATGGCTG 57.293 40.909 0.00 0.00 0.00 4.85
4081 4694 6.377996 TGTTATGCAATCAGAAAAGTATGGCT 59.622 34.615 0.00 0.00 0.00 4.75
4082 4695 6.563422 TGTTATGCAATCAGAAAAGTATGGC 58.437 36.000 0.00 0.00 0.00 4.40
4086 4706 7.936496 TCCATGTTATGCAATCAGAAAAGTA 57.064 32.000 0.00 0.00 0.00 2.24
4282 4902 1.554617 TCGGATTTCAGCCATGACTCA 59.445 47.619 0.00 0.00 34.35 3.41
4297 4917 2.427245 CGGGAGCTTGGTCTCGGAT 61.427 63.158 13.49 0.00 36.74 4.18
4357 4977 3.387947 GGAGGCTCGAACGGGGAA 61.388 66.667 8.69 0.00 0.00 3.97
4417 5038 0.872388 GGTGCAGAGGTTTTACACGG 59.128 55.000 0.00 0.00 32.00 4.94
4447 5068 1.002888 ACAGACTCCAGAGTTGCATGG 59.997 52.381 1.08 0.00 42.66 3.66
4451 5072 4.429108 GAAGATACAGACTCCAGAGTTGC 58.571 47.826 1.08 0.00 42.66 4.17
4481 5102 0.630673 CAGGGATGGATGGGGAACAA 59.369 55.000 0.00 0.00 0.00 2.83
4488 5109 1.066143 GCCGTATACAGGGATGGATGG 60.066 57.143 13.32 0.24 0.00 3.51
4522 5143 9.916397 CGCTCGACTTGTTTATTATTTAGATTT 57.084 29.630 0.00 0.00 0.00 2.17
4523 5144 9.095065 ACGCTCGACTTGTTTATTATTTAGATT 57.905 29.630 0.00 0.00 0.00 2.40
4524 5145 8.540492 CACGCTCGACTTGTTTATTATTTAGAT 58.460 33.333 0.00 0.00 0.00 1.98
4525 5146 7.463648 GCACGCTCGACTTGTTTATTATTTAGA 60.464 37.037 0.00 0.00 0.00 2.10
4526 5147 6.623743 GCACGCTCGACTTGTTTATTATTTAG 59.376 38.462 0.00 0.00 0.00 1.85
4527 5148 6.471839 GCACGCTCGACTTGTTTATTATTTA 58.528 36.000 0.00 0.00 0.00 1.40
4531 5152 2.343246 CGCACGCTCGACTTGTTTATTA 59.657 45.455 0.00 0.00 0.00 0.98
4534 5155 0.595567 ACGCACGCTCGACTTGTTTA 60.596 50.000 3.88 0.00 0.00 2.01
4548 5169 1.940613 GGGAACAGGATCATTACGCAC 59.059 52.381 0.00 0.00 0.00 5.34
4549 5170 1.557371 TGGGAACAGGATCATTACGCA 59.443 47.619 0.00 0.00 35.01 5.24
4550 5171 2.325583 TGGGAACAGGATCATTACGC 57.674 50.000 0.00 0.00 35.01 4.42
4603 5257 4.637091 TGAATGGATTCATGTAGCACTGTG 59.363 41.667 2.76 2.76 41.51 3.66
4620 5274 3.641434 AGGGACTGACTGAATGAATGG 57.359 47.619 0.00 0.00 37.18 3.16
4652 5314 0.531200 CAGGTACACGGAGACTTCCC 59.469 60.000 0.00 0.00 40.67 3.97
4663 5325 2.691011 GAGGATGAGGAGACAGGTACAC 59.309 54.545 0.00 0.00 0.00 2.90
4680 5388 1.980765 AGTGAAGTGGCTGAATGAGGA 59.019 47.619 0.00 0.00 0.00 3.71
4687 5395 3.070878 TGTTCATACAGTGAAGTGGCTGA 59.929 43.478 0.00 0.00 46.99 4.26
4740 5448 4.129380 GGTCACTGCATAGCATGTTGATA 58.871 43.478 0.00 0.00 38.13 2.15
4745 5453 0.914644 AGGGTCACTGCATAGCATGT 59.085 50.000 0.00 0.00 38.13 3.21
4751 5459 4.693566 CGTTTTTCTTAGGGTCACTGCATA 59.306 41.667 0.00 0.00 0.00 3.14
4756 5464 4.146745 ACACGTTTTTCTTAGGGTCACT 57.853 40.909 0.00 0.00 0.00 3.41
4757 5465 4.888038 AACACGTTTTTCTTAGGGTCAC 57.112 40.909 0.00 0.00 0.00 3.67
4758 5466 5.049267 GCATAACACGTTTTTCTTAGGGTCA 60.049 40.000 0.00 0.00 0.00 4.02
4759 5467 5.049267 TGCATAACACGTTTTTCTTAGGGTC 60.049 40.000 0.00 0.00 0.00 4.46
4760 5468 4.822896 TGCATAACACGTTTTTCTTAGGGT 59.177 37.500 0.00 0.00 0.00 4.34
4761 5469 5.048991 ACTGCATAACACGTTTTTCTTAGGG 60.049 40.000 0.00 0.00 0.00 3.53
4762 5470 5.851177 CACTGCATAACACGTTTTTCTTAGG 59.149 40.000 0.00 0.00 0.00 2.69
4763 5471 6.427150 ACACTGCATAACACGTTTTTCTTAG 58.573 36.000 0.00 0.00 0.00 2.18
4764 5472 6.366315 ACACTGCATAACACGTTTTTCTTA 57.634 33.333 0.00 0.00 0.00 2.10
4765 5473 5.243426 ACACTGCATAACACGTTTTTCTT 57.757 34.783 0.00 0.00 0.00 2.52
4766 5474 4.893424 ACACTGCATAACACGTTTTTCT 57.107 36.364 0.00 0.00 0.00 2.52
4767 5475 5.623673 CCTTACACTGCATAACACGTTTTTC 59.376 40.000 0.00 0.00 0.00 2.29
4768 5476 5.297278 TCCTTACACTGCATAACACGTTTTT 59.703 36.000 0.00 0.00 0.00 1.94
4769 5477 4.817464 TCCTTACACTGCATAACACGTTTT 59.183 37.500 0.00 0.00 0.00 2.43
4770 5478 4.212636 GTCCTTACACTGCATAACACGTTT 59.787 41.667 0.00 0.00 0.00 3.60
4771 5479 3.744426 GTCCTTACACTGCATAACACGTT 59.256 43.478 0.00 0.00 0.00 3.99
4772 5480 3.323243 GTCCTTACACTGCATAACACGT 58.677 45.455 0.00 0.00 0.00 4.49
4773 5481 2.344441 CGTCCTTACACTGCATAACACG 59.656 50.000 0.00 0.00 0.00 4.49
4774 5482 2.671396 CCGTCCTTACACTGCATAACAC 59.329 50.000 0.00 0.00 0.00 3.32
4775 5483 2.933492 GCCGTCCTTACACTGCATAACA 60.933 50.000 0.00 0.00 0.00 2.41
4776 5484 1.664151 GCCGTCCTTACACTGCATAAC 59.336 52.381 0.00 0.00 0.00 1.89
4777 5485 1.737696 CGCCGTCCTTACACTGCATAA 60.738 52.381 0.00 0.00 0.00 1.90
4778 5486 0.179121 CGCCGTCCTTACACTGCATA 60.179 55.000 0.00 0.00 0.00 3.14
4779 5487 1.447838 CGCCGTCCTTACACTGCAT 60.448 57.895 0.00 0.00 0.00 3.96
4780 5488 2.048597 CGCCGTCCTTACACTGCA 60.049 61.111 0.00 0.00 0.00 4.41
4781 5489 2.813908 CCGCCGTCCTTACACTGC 60.814 66.667 0.00 0.00 0.00 4.40
4782 5490 0.601841 AAACCGCCGTCCTTACACTG 60.602 55.000 0.00 0.00 0.00 3.66
4783 5491 0.107268 AAAACCGCCGTCCTTACACT 59.893 50.000 0.00 0.00 0.00 3.55
4827 5535 1.134560 GACTAGGTAGAGTGGTTGCCG 59.865 57.143 0.00 0.00 0.00 5.69
4840 5548 1.515954 CCCATCGCGTTGACTAGGT 59.484 57.895 18.44 0.00 0.00 3.08
4858 5566 1.199327 GACGGAGGTAAAAGCTTTGCC 59.801 52.381 13.54 17.38 0.00 4.52
4881 5593 6.512297 ACTTACGCAGGATTTTCATGTTTTT 58.488 32.000 0.00 0.00 29.72 1.94
4882 5594 6.084326 ACTTACGCAGGATTTTCATGTTTT 57.916 33.333 0.00 0.00 29.72 2.43
4883 5595 5.705609 ACTTACGCAGGATTTTCATGTTT 57.294 34.783 0.00 0.00 29.72 2.83
4917 5629 2.999355 GAGTGCTCAGAGTAAAAGCAGG 59.001 50.000 0.00 0.00 45.99 4.85
4918 5630 3.679025 CAGAGTGCTCAGAGTAAAAGCAG 59.321 47.826 0.00 0.00 45.99 4.24
4919 5631 3.321968 TCAGAGTGCTCAGAGTAAAAGCA 59.678 43.478 0.00 0.00 43.40 3.91
4925 5640 4.165180 AGGAGTATCAGAGTGCTCAGAGTA 59.835 45.833 0.00 0.00 36.25 2.59
4964 5699 0.516877 GAAGCAGCGCACATGTTGTA 59.483 50.000 11.47 0.00 0.00 2.41
5115 5851 3.265489 AGTTACAAGGGAATGGGGAAGA 58.735 45.455 0.00 0.00 0.00 2.87
5116 5852 3.739401 AGTTACAAGGGAATGGGGAAG 57.261 47.619 0.00 0.00 0.00 3.46
5117 5853 4.264038 GGTTAGTTACAAGGGAATGGGGAA 60.264 45.833 0.00 0.00 0.00 3.97
5118 5854 3.267551 GGTTAGTTACAAGGGAATGGGGA 59.732 47.826 0.00 0.00 0.00 4.81
5119 5855 3.626475 GGGTTAGTTACAAGGGAATGGGG 60.626 52.174 0.00 0.00 0.00 4.96
5120 5856 3.010808 TGGGTTAGTTACAAGGGAATGGG 59.989 47.826 0.00 0.00 0.00 4.00
5121 5857 4.270008 CTGGGTTAGTTACAAGGGAATGG 58.730 47.826 0.00 0.00 0.00 3.16
5122 5858 3.694566 GCTGGGTTAGTTACAAGGGAATG 59.305 47.826 0.00 0.00 0.00 2.67
5123 5859 3.308904 GGCTGGGTTAGTTACAAGGGAAT 60.309 47.826 0.00 0.00 0.00 3.01
5124 5860 2.040679 GGCTGGGTTAGTTACAAGGGAA 59.959 50.000 0.00 0.00 0.00 3.97
5125 5861 1.631898 GGCTGGGTTAGTTACAAGGGA 59.368 52.381 0.00 0.00 0.00 4.20
5126 5862 1.633945 AGGCTGGGTTAGTTACAAGGG 59.366 52.381 0.00 0.00 0.00 3.95
5127 5863 2.677037 CGAGGCTGGGTTAGTTACAAGG 60.677 54.545 0.00 0.00 0.00 3.61
5128 5864 2.028385 ACGAGGCTGGGTTAGTTACAAG 60.028 50.000 0.51 0.00 0.00 3.16
5131 5881 1.134877 GGACGAGGCTGGGTTAGTTAC 60.135 57.143 0.51 0.00 0.00 2.50
5190 5941 1.452651 CGCTTCCCATGTGGAGCAT 60.453 57.895 9.29 0.00 46.24 3.79
5210 5961 3.295273 TCTGCACACCGACTCGCT 61.295 61.111 0.00 0.00 0.00 4.93
5211 5962 3.106407 GTCTGCACACCGACTCGC 61.106 66.667 0.00 0.00 0.00 5.03
5213 5964 3.106407 GCGTCTGCACACCGACTC 61.106 66.667 2.77 0.00 42.15 3.36
5233 5984 4.135153 CAGAGACCGTCCCTGCCG 62.135 72.222 0.00 0.00 0.00 5.69
5234 5985 2.997897 ACAGAGACCGTCCCTGCC 60.998 66.667 9.81 0.00 0.00 4.85
5258 6009 2.860735 GAGGACGGCGATATAATCATGC 59.139 50.000 16.62 0.00 0.00 4.06
5279 6030 5.349817 GTGATTAGTGAGGTCAATGTCAGTG 59.650 44.000 0.00 0.00 0.00 3.66
5280 6031 5.482908 GTGATTAGTGAGGTCAATGTCAGT 58.517 41.667 0.00 0.00 0.00 3.41
5357 6116 1.348064 TGGTTCCGAGGAGAACACAT 58.652 50.000 6.73 0.00 46.52 3.21
5415 6174 5.578727 GCATGACAGAGACGATTTTTCTAGT 59.421 40.000 0.00 0.00 0.00 2.57
5429 6188 1.326213 ACGGAGGGAGCATGACAGAG 61.326 60.000 0.00 0.00 0.00 3.35
5437 6196 1.580059 ATTTTAGGACGGAGGGAGCA 58.420 50.000 0.00 0.00 0.00 4.26
5438 6197 5.479124 TTATATTTTAGGACGGAGGGAGC 57.521 43.478 0.00 0.00 0.00 4.70
5474 6233 9.388346 CGTTTTTGACATTATGCTAGTGTTAAA 57.612 29.630 0.00 0.00 34.01 1.52
5475 6234 8.561212 ACGTTTTTGACATTATGCTAGTGTTAA 58.439 29.630 0.00 0.00 0.00 2.01
5476 6235 8.090250 ACGTTTTTGACATTATGCTAGTGTTA 57.910 30.769 0.00 0.00 0.00 2.41
5477 6236 6.966021 ACGTTTTTGACATTATGCTAGTGTT 58.034 32.000 0.00 0.00 0.00 3.32
5478 6237 6.554334 ACGTTTTTGACATTATGCTAGTGT 57.446 33.333 0.00 0.00 0.00 3.55
5479 6238 7.851822 AAACGTTTTTGACATTATGCTAGTG 57.148 32.000 7.96 0.00 0.00 2.74
5480 6239 8.865590 AAAAACGTTTTTGACATTATGCTAGT 57.134 26.923 32.14 7.76 38.81 2.57
5489 6248 9.418045 CCCAGAATATAAAAACGTTTTTGACAT 57.582 29.630 36.92 27.57 40.33 3.06
5490 6249 8.630917 TCCCAGAATATAAAAACGTTTTTGACA 58.369 29.630 36.92 25.32 40.33 3.58
5491 6250 9.634163 ATCCCAGAATATAAAAACGTTTTTGAC 57.366 29.630 36.92 24.82 40.33 3.18
5496 6255 9.338622 CCTCTATCCCAGAATATAAAAACGTTT 57.661 33.333 7.96 7.96 31.12 3.60
5497 6256 7.937394 CCCTCTATCCCAGAATATAAAAACGTT 59.063 37.037 0.00 0.00 31.12 3.99
5498 6257 7.291651 TCCCTCTATCCCAGAATATAAAAACGT 59.708 37.037 0.00 0.00 31.12 3.99
5499 6258 7.676947 TCCCTCTATCCCAGAATATAAAAACG 58.323 38.462 0.00 0.00 31.12 3.60
5500 6259 8.661345 ACTCCCTCTATCCCAGAATATAAAAAC 58.339 37.037 0.00 0.00 31.12 2.43
5501 6260 8.814448 ACTCCCTCTATCCCAGAATATAAAAA 57.186 34.615 0.00 0.00 31.12 1.94
5502 6261 9.548631 CTACTCCCTCTATCCCAGAATATAAAA 57.451 37.037 0.00 0.00 31.12 1.52
5503 6262 8.689054 ACTACTCCCTCTATCCCAGAATATAAA 58.311 37.037 0.00 0.00 31.12 1.40
5504 6263 8.245929 ACTACTCCCTCTATCCCAGAATATAA 57.754 38.462 0.00 0.00 31.12 0.98
5505 6264 7.848821 ACTACTCCCTCTATCCCAGAATATA 57.151 40.000 0.00 0.00 31.12 0.86
5506 6265 6.744802 ACTACTCCCTCTATCCCAGAATAT 57.255 41.667 0.00 0.00 31.12 1.28
5507 6266 6.547396 AACTACTCCCTCTATCCCAGAATA 57.453 41.667 0.00 0.00 31.12 1.75
5508 6267 5.426325 AACTACTCCCTCTATCCCAGAAT 57.574 43.478 0.00 0.00 31.12 2.40
5509 6268 4.901785 AACTACTCCCTCTATCCCAGAA 57.098 45.455 0.00 0.00 31.12 3.02
5510 6269 4.901785 AAACTACTCCCTCTATCCCAGA 57.098 45.455 0.00 0.00 0.00 3.86
5511 6270 5.959583 AAAAACTACTCCCTCTATCCCAG 57.040 43.478 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.