Multiple sequence alignment - TraesCS6D01G362100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G362100 chr6D 100.000 5190 0 0 1 5190 452838446 452843635 0.000000e+00 9585.0
1 TraesCS6D01G362100 chr6D 82.327 1573 227 27 2626 4193 452931457 452929931 0.000000e+00 1317.0
2 TraesCS6D01G362100 chr6D 83.930 1257 194 6 2941 4193 452907500 452908752 0.000000e+00 1195.0
3 TraesCS6D01G362100 chr6D 78.770 862 145 25 1274 2122 452485797 452484961 1.270000e-150 544.0
4 TraesCS6D01G362100 chr6D 77.131 962 163 38 1156 2082 452906189 452907128 6.000000e-139 505.0
5 TraesCS6D01G362100 chr6D 80.141 569 99 9 1558 2119 452848799 452849360 3.740000e-111 412.0
6 TraesCS6D01G362100 chr6D 81.068 412 75 2 1708 2119 452931905 452931497 5.010000e-85 326.0
7 TraesCS6D01G362100 chr6D 79.814 431 76 9 2179 2607 375311300 375310879 2.350000e-78 303.0
8 TraesCS6D01G362100 chr6D 82.836 134 12 8 4778 4902 100582062 100582193 5.490000e-20 110.0
9 TraesCS6D01G362100 chr6D 81.203 133 14 9 4779 4902 100573750 100573880 4.280000e-16 97.1
10 TraesCS6D01G362100 chr6D 94.340 53 3 0 4853 4905 307887052 307887104 1.200000e-11 82.4
11 TraesCS6D01G362100 chr6A 95.997 2598 102 1 2593 5190 598790587 598793182 0.000000e+00 4220.0
12 TraesCS6D01G362100 chr6A 95.009 1162 35 10 995 2133 598789398 598790559 0.000000e+00 1803.0
13 TraesCS6D01G362100 chr6A 83.623 1264 186 10 2937 4193 598925564 598924315 0.000000e+00 1168.0
14 TraesCS6D01G362100 chr6A 83.320 1253 202 4 2943 4191 598860595 598861844 0.000000e+00 1149.0
15 TraesCS6D01G362100 chr6A 80.957 940 159 15 1164 2092 598926820 598925890 0.000000e+00 726.0
16 TraesCS6D01G362100 chr6A 78.711 869 133 37 1274 2122 598157642 598156806 2.750000e-147 532.0
17 TraesCS6D01G362100 chr6A 77.138 573 106 16 1554 2119 598810401 598810955 5.050000e-80 309.0
18 TraesCS6D01G362100 chr6A 83.436 163 24 3 5027 5188 54939955 54940115 1.160000e-31 148.0
19 TraesCS6D01G362100 chr6A 82.716 162 25 3 5028 5188 54903181 54903340 1.950000e-29 141.0
20 TraesCS6D01G362100 chr6A 81.955 133 13 8 4779 4902 521508147 521508277 9.190000e-18 102.0
21 TraesCS6D01G362100 chr6A 81.343 134 14 8 4778 4902 521516148 521516279 1.190000e-16 99.0
22 TraesCS6D01G362100 chr6B 95.969 1811 73 0 2611 4421 687732623 687734433 0.000000e+00 2940.0
23 TraesCS6D01G362100 chr6B 95.352 839 37 2 1296 2133 687731781 687732618 0.000000e+00 1332.0
24 TraesCS6D01G362100 chr6B 85.088 1254 175 7 2944 4189 688033490 688032241 0.000000e+00 1269.0
25 TraesCS6D01G362100 chr6B 84.349 1214 182 6 2984 4193 687956210 687957419 0.000000e+00 1182.0
26 TraesCS6D01G362100 chr6B 83.612 1257 201 4 2937 4193 688064580 688063329 0.000000e+00 1175.0
27 TraesCS6D01G362100 chr6B 83.797 1259 171 14 2937 4193 688125223 688123996 0.000000e+00 1164.0
28 TraesCS6D01G362100 chr6B 84.672 946 142 3 2943 3886 687876236 687877180 0.000000e+00 941.0
29 TraesCS6D01G362100 chr6B 79.580 999 166 25 1150 2126 687873593 687874575 0.000000e+00 680.0
30 TraesCS6D01G362100 chr6B 79.314 846 143 27 1274 2106 687180441 687179615 9.760000e-157 564.0
31 TraesCS6D01G362100 chr6B 79.778 722 121 11 1150 1851 688080699 688079983 7.760000e-138 501.0
32 TraesCS6D01G362100 chr6B 78.419 658 123 13 1466 2119 688126183 688125541 1.350000e-110 411.0
33 TraesCS6D01G362100 chr6B 80.198 404 66 11 2206 2600 5678826 5679224 1.830000e-74 291.0
34 TraesCS6D01G362100 chr6B 79.529 425 74 10 2181 2598 705488381 705488799 1.830000e-74 291.0
35 TraesCS6D01G362100 chr6B 81.818 319 52 4 1808 2123 687255269 687255584 3.990000e-66 263.0
36 TraesCS6D01G362100 chr6B 95.152 165 8 0 5026 5190 687736339 687736503 1.430000e-65 261.0
37 TraesCS6D01G362100 chr6B 79.675 369 51 15 1 364 641865271 641865620 1.440000e-60 244.0
38 TraesCS6D01G362100 chr6B 92.398 171 10 1 4861 5031 687734433 687734600 1.870000e-59 241.0
39 TraesCS6D01G362100 chr6B 84.545 220 32 2 2627 2845 687179497 687179279 3.150000e-52 217.0
40 TraesCS6D01G362100 chr6B 81.313 198 11 14 1011 1207 687731617 687731789 2.520000e-28 137.0
41 TraesCS6D01G362100 chr3D 90.880 932 75 10 66 992 365523581 365524507 0.000000e+00 1242.0
42 TraesCS6D01G362100 chr3D 89.733 935 84 12 68 996 427208096 427209024 0.000000e+00 1184.0
43 TraesCS6D01G362100 chr3D 83.951 162 23 3 5028 5188 591187108 591186949 9.000000e-33 152.0
44 TraesCS6D01G362100 chr3D 87.288 118 13 2 1 117 24196118 24196002 3.260000e-27 134.0
45 TraesCS6D01G362100 chr3D 82.143 84 13 2 5030 5112 419467026 419467108 2.590000e-08 71.3
46 TraesCS6D01G362100 chr5D 90.374 935 79 9 66 992 255070726 255071657 0.000000e+00 1218.0
47 TraesCS6D01G362100 chr5D 90.799 413 32 5 2181 2590 362192525 362192934 9.830000e-152 547.0
48 TraesCS6D01G362100 chr3B 89.574 940 77 12 67 992 251190662 251189730 0.000000e+00 1173.0
49 TraesCS6D01G362100 chr3B 84.211 114 15 3 5075 5188 17035706 17035816 1.980000e-19 108.0
50 TraesCS6D01G362100 chr4D 89.412 935 86 11 66 992 344880060 344879131 0.000000e+00 1166.0
51 TraesCS6D01G362100 chr4D 79.630 162 27 5 5020 5180 2828568 2828412 1.530000e-20 111.0
52 TraesCS6D01G362100 chr4D 82.759 116 10 7 4795 4903 380866512 380866624 1.540000e-15 95.3
53 TraesCS6D01G362100 chr7D 89.378 932 82 11 67 992 49633406 49632486 0.000000e+00 1157.0
54 TraesCS6D01G362100 chr7D 91.484 411 23 10 2180 2586 48707155 48707557 5.870000e-154 555.0
55 TraesCS6D01G362100 chr7D 90.998 411 27 9 2180 2586 48625145 48625549 3.530000e-151 545.0
56 TraesCS6D01G362100 chr7D 90.998 411 24 9 2180 2586 48751060 48751461 4.570000e-150 542.0
57 TraesCS6D01G362100 chr7D 91.304 92 6 2 1 90 506520311 506520220 1.960000e-24 124.0
58 TraesCS6D01G362100 chr5A 89.175 933 91 10 66 992 44339548 44338620 0.000000e+00 1155.0
59 TraesCS6D01G362100 chr5A 83.467 375 48 14 2235 2605 69544929 69544565 2.320000e-88 337.0
60 TraesCS6D01G362100 chr2A 89.114 937 85 14 66 992 93925298 93926227 0.000000e+00 1149.0
61 TraesCS6D01G362100 chr2A 91.422 408 28 6 2181 2586 732561151 732561553 2.110000e-153 553.0
62 TraesCS6D01G362100 chr2A 82.885 409 64 5 2180 2586 710649831 710650235 3.820000e-96 363.0
63 TraesCS6D01G362100 chr2A 81.087 423 68 10 2180 2595 61475557 61475974 1.390000e-85 327.0
64 TraesCS6D01G362100 chr2A 79.268 246 25 14 1 244 625794229 625794450 1.160000e-31 148.0
65 TraesCS6D01G362100 chr7B 88.948 941 87 10 66 993 339239828 339240764 0.000000e+00 1146.0
66 TraesCS6D01G362100 chr7B 81.102 381 62 9 2225 2598 481852455 481852078 3.930000e-76 296.0
67 TraesCS6D01G362100 chr7B 81.884 138 14 8 4777 4905 161754681 161754546 7.110000e-19 106.0
68 TraesCS6D01G362100 chr7B 80.822 146 16 9 4769 4905 409856067 409855925 2.560000e-18 104.0
69 TraesCS6D01G362100 chrUn 90.799 413 30 8 2181 2589 71473665 71473257 3.530000e-151 545.0
70 TraesCS6D01G362100 chrUn 90.557 413 30 8 2181 2589 71414603 71414196 5.910000e-149 538.0
71 TraesCS6D01G362100 chrUn 81.481 162 27 3 5028 5188 36124688 36124529 4.220000e-26 130.0
72 TraesCS6D01G362100 chrUn 81.752 137 14 8 4778 4905 362179885 362179751 2.560000e-18 104.0
73 TraesCS6D01G362100 chrUn 81.818 132 13 8 4780 4902 280151336 280151465 3.310000e-17 100.0
74 TraesCS6D01G362100 chrUn 81.481 135 14 8 4780 4905 292902248 292902116 3.310000e-17 100.0
75 TraesCS6D01G362100 chrUn 81.203 133 14 8 4779 4902 284645532 284645662 4.280000e-16 97.1
76 TraesCS6D01G362100 chrUn 81.203 133 14 8 4779 4902 300774557 300774687 4.280000e-16 97.1
77 TraesCS6D01G362100 chr7A 90.557 413 31 7 2181 2589 85029183 85028775 1.640000e-149 540.0
78 TraesCS6D01G362100 chr7A 89.412 85 9 0 1 85 573854152 573854068 1.980000e-19 108.0
79 TraesCS6D01G362100 chr7A 88.172 93 7 3 1 89 694263268 694263176 1.980000e-19 108.0
80 TraesCS6D01G362100 chr2D 90.909 407 29 7 2181 2586 571884743 571885142 1.640000e-149 540.0
81 TraesCS6D01G362100 chr2D 91.765 85 7 0 1 85 555196162 555196078 9.130000e-23 119.0
82 TraesCS6D01G362100 chr1D 81.567 434 69 7 2181 2606 405386693 405387123 1.070000e-91 348.0
83 TraesCS6D01G362100 chr1D 79.720 429 72 13 2176 2595 443191911 443192333 3.930000e-76 296.0
84 TraesCS6D01G362100 chr2B 79.083 545 77 27 1 536 110134950 110134434 1.790000e-89 340.0
85 TraesCS6D01G362100 chr2B 83.333 132 13 7 4779 4903 661428561 661428432 4.250000e-21 113.0
86 TraesCS6D01G362100 chr1A 83.030 165 21 4 5024 5188 99158105 99158262 5.420000e-30 143.0
87 TraesCS6D01G362100 chr1A 82.482 137 11 10 4779 4905 252443637 252443504 1.980000e-19 108.0
88 TraesCS6D01G362100 chr1A 82.707 133 12 8 4779 4902 460485258 460485388 1.980000e-19 108.0
89 TraesCS6D01G362100 chr1A 81.752 137 14 8 4778 4905 25437266 25437132 2.560000e-18 104.0
90 TraesCS6D01G362100 chr1A 82.090 134 13 8 4778 4902 173994765 173994896 2.560000e-18 104.0
91 TraesCS6D01G362100 chr1A 82.090 134 13 8 4778 4902 460497433 460497564 2.560000e-18 104.0
92 TraesCS6D01G362100 chr1A 87.037 54 7 0 3750 3803 547388303 547388250 1.560000e-05 62.1
93 TraesCS6D01G362100 chr5B 82.482 137 13 8 4778 4905 385609822 385609688 5.490000e-20 110.0
94 TraesCS6D01G362100 chr5B 82.482 137 13 8 4778 4905 495236479 495236345 5.490000e-20 110.0
95 TraesCS6D01G362100 chr5B 82.482 137 13 8 4778 4905 557858622 557858488 5.490000e-20 110.0
96 TraesCS6D01G362100 chr4B 81.818 143 14 9 4769 4902 154925834 154925973 5.490000e-20 110.0
97 TraesCS6D01G362100 chr4B 82.482 137 13 8 4778 4905 333479272 333479138 5.490000e-20 110.0
98 TraesCS6D01G362100 chr4B 81.379 145 16 8 4770 4905 29516839 29516697 1.980000e-19 108.0
99 TraesCS6D01G362100 chr1B 82.836 134 12 8 4778 4902 118893090 118893221 5.490000e-20 110.0
100 TraesCS6D01G362100 chr1B 88.889 54 6 0 3750 3803 622703046 622702993 3.350000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G362100 chr6D 452838446 452843635 5189 False 9585.0 9585 100.0000 1 5190 1 chr6D.!!$F4 5189
1 TraesCS6D01G362100 chr6D 452906189 452908752 2563 False 850.0 1195 80.5305 1156 4193 2 chr6D.!!$F6 3037
2 TraesCS6D01G362100 chr6D 452929931 452931905 1974 True 821.5 1317 81.6975 1708 4193 2 chr6D.!!$R3 2485
3 TraesCS6D01G362100 chr6D 452484961 452485797 836 True 544.0 544 78.7700 1274 2122 1 chr6D.!!$R2 848
4 TraesCS6D01G362100 chr6D 452848799 452849360 561 False 412.0 412 80.1410 1558 2119 1 chr6D.!!$F5 561
5 TraesCS6D01G362100 chr6A 598789398 598793182 3784 False 3011.5 4220 95.5030 995 5190 2 chr6A.!!$F7 4195
6 TraesCS6D01G362100 chr6A 598860595 598861844 1249 False 1149.0 1149 83.3200 2943 4191 1 chr6A.!!$F6 1248
7 TraesCS6D01G362100 chr6A 598924315 598926820 2505 True 947.0 1168 82.2900 1164 4193 2 chr6A.!!$R2 3029
8 TraesCS6D01G362100 chr6A 598156806 598157642 836 True 532.0 532 78.7110 1274 2122 1 chr6A.!!$R1 848
9 TraesCS6D01G362100 chr6A 598810401 598810955 554 False 309.0 309 77.1380 1554 2119 1 chr6A.!!$F5 565
10 TraesCS6D01G362100 chr6B 688032241 688033490 1249 True 1269.0 1269 85.0880 2944 4189 1 chr6B.!!$R1 1245
11 TraesCS6D01G362100 chr6B 687956210 687957419 1209 False 1182.0 1182 84.3490 2984 4193 1 chr6B.!!$F4 1209
12 TraesCS6D01G362100 chr6B 688063329 688064580 1251 True 1175.0 1175 83.6120 2937 4193 1 chr6B.!!$R2 1256
13 TraesCS6D01G362100 chr6B 687731617 687736503 4886 False 982.2 2940 92.0368 1011 5190 5 chr6B.!!$F6 4179
14 TraesCS6D01G362100 chr6B 687873593 687877180 3587 False 810.5 941 82.1260 1150 3886 2 chr6B.!!$F7 2736
15 TraesCS6D01G362100 chr6B 688123996 688126183 2187 True 787.5 1164 81.1080 1466 4193 2 chr6B.!!$R5 2727
16 TraesCS6D01G362100 chr6B 688079983 688080699 716 True 501.0 501 79.7780 1150 1851 1 chr6B.!!$R3 701
17 TraesCS6D01G362100 chr6B 687179279 687180441 1162 True 390.5 564 81.9295 1274 2845 2 chr6B.!!$R4 1571
18 TraesCS6D01G362100 chr3D 365523581 365524507 926 False 1242.0 1242 90.8800 66 992 1 chr3D.!!$F1 926
19 TraesCS6D01G362100 chr3D 427208096 427209024 928 False 1184.0 1184 89.7330 68 996 1 chr3D.!!$F3 928
20 TraesCS6D01G362100 chr5D 255070726 255071657 931 False 1218.0 1218 90.3740 66 992 1 chr5D.!!$F1 926
21 TraesCS6D01G362100 chr3B 251189730 251190662 932 True 1173.0 1173 89.5740 67 992 1 chr3B.!!$R1 925
22 TraesCS6D01G362100 chr4D 344879131 344880060 929 True 1166.0 1166 89.4120 66 992 1 chr4D.!!$R2 926
23 TraesCS6D01G362100 chr7D 49632486 49633406 920 True 1157.0 1157 89.3780 67 992 1 chr7D.!!$R1 925
24 TraesCS6D01G362100 chr5A 44338620 44339548 928 True 1155.0 1155 89.1750 66 992 1 chr5A.!!$R1 926
25 TraesCS6D01G362100 chr2A 93925298 93926227 929 False 1149.0 1149 89.1140 66 992 1 chr2A.!!$F2 926
26 TraesCS6D01G362100 chr7B 339239828 339240764 936 False 1146.0 1146 88.9480 66 993 1 chr7B.!!$F1 927
27 TraesCS6D01G362100 chr2B 110134434 110134950 516 True 340.0 340 79.0830 1 536 1 chr2B.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 1.153369 CACCGATCGAGCAATGGGT 60.153 57.895 18.66 0.0 38.16 4.51 F
829 858 1.337728 CGCTACCATTGTGACTGTGGA 60.338 52.381 12.51 0.0 36.82 4.02 F
1883 2002 0.179040 GACGGTCAAACCTCCCACAA 60.179 55.000 2.62 0.0 35.66 3.33 F
2195 2327 0.109723 TTCAGGAGGGGAACGTTTGG 59.890 55.000 0.46 0.0 0.00 3.28 F
2197 2329 0.179001 CAGGAGGGGAACGTTTGGTT 60.179 55.000 0.46 0.0 42.96 3.67 F
2863 3129 0.179134 CACGGATCTTGGGTCGTCTC 60.179 60.000 0.00 0.0 33.31 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1182 1245 0.592637 TGCTTGACATGCTTTCCACG 59.407 50.000 13.81 0.0 0.00 4.94 R
2176 2308 0.109723 CCAAACGTTCCCCTCCTGAA 59.890 55.000 0.00 0.0 0.00 3.02 R
3595 5132 0.245266 TGCCGTCGAGCAAGATGTTA 59.755 50.000 6.01 0.0 40.56 2.41 R
4021 5563 0.253044 GCTGGTACCTCCTCAATGCA 59.747 55.000 14.36 0.0 37.07 3.96 R
4071 5613 1.301293 CTTTGCCCCTCCTCCAGAC 59.699 63.158 0.00 0.0 0.00 3.51 R
4766 6321 1.251251 CACTTTCAAGAAGGCCCTGG 58.749 55.000 0.00 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.443407 CCTCCACCGATCGAGCAAT 59.557 57.895 18.66 0.00 0.00 3.56
35 36 1.153369 CACCGATCGAGCAATGGGT 60.153 57.895 18.66 0.00 38.16 4.51
385 391 4.072088 GCGCGTTGACTTCCACGG 62.072 66.667 8.43 0.00 0.00 4.94
453 459 1.366366 CGGTCTTCGTCACCCTGTT 59.634 57.895 0.00 0.00 0.00 3.16
555 580 3.724914 CTCTTCTTCCGCGGCTCCC 62.725 68.421 23.51 0.00 0.00 4.30
736 763 4.796231 GCCACGACTCCGCGATGT 62.796 66.667 8.23 5.50 39.95 3.06
780 809 2.035442 GTCTGTCGGCTTGCCTTCC 61.035 63.158 10.12 0.00 0.00 3.46
826 855 1.668919 CGTCGCTACCATTGTGACTGT 60.669 52.381 0.00 0.00 41.26 3.55
829 858 1.337728 CGCTACCATTGTGACTGTGGA 60.338 52.381 12.51 0.00 36.82 4.02
849 881 6.613679 TGTGGAGGGATGTTGAGTATAATGTA 59.386 38.462 0.00 0.00 0.00 2.29
899 933 7.139392 GGATTTGTTCCTTTCTTGTCTTGTAC 58.861 38.462 0.00 0.00 41.78 2.90
900 934 7.013369 GGATTTGTTCCTTTCTTGTCTTGTACT 59.987 37.037 0.00 0.00 41.78 2.73
901 935 7.696992 TTTGTTCCTTTCTTGTCTTGTACTT 57.303 32.000 0.00 0.00 0.00 2.24
902 936 6.920569 TGTTCCTTTCTTGTCTTGTACTTC 57.079 37.500 0.00 0.00 0.00 3.01
903 937 6.411376 TGTTCCTTTCTTGTCTTGTACTTCA 58.589 36.000 0.00 0.00 0.00 3.02
904 938 6.882140 TGTTCCTTTCTTGTCTTGTACTTCAA 59.118 34.615 0.00 0.00 34.61 2.69
905 939 7.556275 TGTTCCTTTCTTGTCTTGTACTTCAAT 59.444 33.333 0.00 0.00 35.35 2.57
906 940 8.406297 GTTCCTTTCTTGTCTTGTACTTCAATT 58.594 33.333 0.00 0.00 35.35 2.32
907 941 8.519799 TCCTTTCTTGTCTTGTACTTCAATTT 57.480 30.769 0.00 0.00 35.35 1.82
908 942 8.405531 TCCTTTCTTGTCTTGTACTTCAATTTG 58.594 33.333 0.00 0.00 35.35 2.32
909 943 7.649306 CCTTTCTTGTCTTGTACTTCAATTTGG 59.351 37.037 0.00 0.00 35.35 3.28
910 944 7.639113 TTCTTGTCTTGTACTTCAATTTGGT 57.361 32.000 0.00 0.00 35.35 3.67
911 945 7.259290 TCTTGTCTTGTACTTCAATTTGGTC 57.741 36.000 0.00 0.00 35.35 4.02
912 946 6.826231 TCTTGTCTTGTACTTCAATTTGGTCA 59.174 34.615 0.00 0.00 35.35 4.02
913 947 7.502226 TCTTGTCTTGTACTTCAATTTGGTCAT 59.498 33.333 0.00 0.00 35.35 3.06
914 948 7.581213 TGTCTTGTACTTCAATTTGGTCATT 57.419 32.000 0.00 0.00 35.35 2.57
915 949 7.424803 TGTCTTGTACTTCAATTTGGTCATTG 58.575 34.615 0.00 0.00 35.35 2.82
916 950 7.068103 TGTCTTGTACTTCAATTTGGTCATTGT 59.932 33.333 0.00 0.00 35.86 2.71
917 951 8.564574 GTCTTGTACTTCAATTTGGTCATTGTA 58.435 33.333 0.00 0.00 35.86 2.41
918 952 8.564574 TCTTGTACTTCAATTTGGTCATTGTAC 58.435 33.333 0.00 0.00 35.86 2.90
919 953 8.458573 TTGTACTTCAATTTGGTCATTGTACT 57.541 30.769 0.00 0.00 35.86 2.73
920 954 8.094798 TGTACTTCAATTTGGTCATTGTACTC 57.905 34.615 0.00 0.00 35.86 2.59
921 955 6.575162 ACTTCAATTTGGTCATTGTACTCC 57.425 37.500 0.00 0.00 35.86 3.85
922 956 6.306987 ACTTCAATTTGGTCATTGTACTCCT 58.693 36.000 0.00 0.00 35.86 3.69
923 957 7.458397 ACTTCAATTTGGTCATTGTACTCCTA 58.542 34.615 0.00 0.00 35.86 2.94
924 958 8.109634 ACTTCAATTTGGTCATTGTACTCCTAT 58.890 33.333 0.00 0.00 35.86 2.57
925 959 9.613428 CTTCAATTTGGTCATTGTACTCCTATA 57.387 33.333 0.00 0.00 35.86 1.31
933 967 8.924303 TGGTCATTGTACTCCTATATATATGCC 58.076 37.037 5.44 0.00 0.00 4.40
934 968 8.082852 GGTCATTGTACTCCTATATATATGCCG 58.917 40.741 5.44 0.00 0.00 5.69
935 969 8.847196 GTCATTGTACTCCTATATATATGCCGA 58.153 37.037 5.44 0.00 0.00 5.54
936 970 8.847196 TCATTGTACTCCTATATATATGCCGAC 58.153 37.037 5.44 0.00 0.00 4.79
937 971 6.856135 TGTACTCCTATATATATGCCGACG 57.144 41.667 5.44 0.00 0.00 5.12
938 972 6.585416 TGTACTCCTATATATATGCCGACGA 58.415 40.000 5.44 0.00 0.00 4.20
939 973 6.704937 TGTACTCCTATATATATGCCGACGAG 59.295 42.308 5.44 4.01 0.00 4.18
940 974 5.064558 ACTCCTATATATATGCCGACGAGG 58.935 45.833 5.44 2.71 44.97 4.63
949 983 4.354155 CCGACGAGGCTCAAACAA 57.646 55.556 15.95 0.00 0.00 2.83
950 984 2.840974 CCGACGAGGCTCAAACAAT 58.159 52.632 15.95 0.00 0.00 2.71
951 985 2.004583 CCGACGAGGCTCAAACAATA 57.995 50.000 15.95 0.00 0.00 1.90
952 986 1.659098 CCGACGAGGCTCAAACAATAC 59.341 52.381 15.95 0.00 0.00 1.89
953 987 2.333926 CGACGAGGCTCAAACAATACA 58.666 47.619 15.95 0.00 0.00 2.29
954 988 2.930040 CGACGAGGCTCAAACAATACAT 59.070 45.455 15.95 0.00 0.00 2.29
955 989 3.000322 CGACGAGGCTCAAACAATACATC 60.000 47.826 15.95 0.00 0.00 3.06
956 990 3.932710 GACGAGGCTCAAACAATACATCA 59.067 43.478 15.95 0.00 0.00 3.07
957 991 4.323417 ACGAGGCTCAAACAATACATCAA 58.677 39.130 15.95 0.00 0.00 2.57
958 992 4.943705 ACGAGGCTCAAACAATACATCAAT 59.056 37.500 15.95 0.00 0.00 2.57
959 993 5.065218 ACGAGGCTCAAACAATACATCAATC 59.935 40.000 15.95 0.00 0.00 2.67
960 994 5.490139 AGGCTCAAACAATACATCAATCG 57.510 39.130 0.00 0.00 0.00 3.34
961 995 5.185454 AGGCTCAAACAATACATCAATCGA 58.815 37.500 0.00 0.00 0.00 3.59
962 996 5.824624 AGGCTCAAACAATACATCAATCGAT 59.175 36.000 0.00 0.00 0.00 3.59
963 997 6.319658 AGGCTCAAACAATACATCAATCGATT 59.680 34.615 4.39 4.39 0.00 3.34
964 998 6.634436 GGCTCAAACAATACATCAATCGATTC 59.366 38.462 7.92 0.00 0.00 2.52
965 999 6.634436 GCTCAAACAATACATCAATCGATTCC 59.366 38.462 7.92 0.00 0.00 3.01
966 1000 7.622893 TCAAACAATACATCAATCGATTCCA 57.377 32.000 7.92 0.00 0.00 3.53
967 1001 8.224389 TCAAACAATACATCAATCGATTCCAT 57.776 30.769 7.92 0.22 0.00 3.41
968 1002 8.344831 TCAAACAATACATCAATCGATTCCATC 58.655 33.333 7.92 0.00 0.00 3.51
969 1003 7.806409 AACAATACATCAATCGATTCCATCA 57.194 32.000 7.92 0.00 0.00 3.07
970 1004 7.806409 ACAATACATCAATCGATTCCATCAA 57.194 32.000 7.92 0.00 0.00 2.57
971 1005 8.224389 ACAATACATCAATCGATTCCATCAAA 57.776 30.769 7.92 0.00 0.00 2.69
972 1006 8.853126 ACAATACATCAATCGATTCCATCAAAT 58.147 29.630 7.92 0.00 0.00 2.32
973 1007 9.338291 CAATACATCAATCGATTCCATCAAATC 57.662 33.333 7.92 0.00 33.22 2.17
974 1008 6.323203 ACATCAATCGATTCCATCAAATCC 57.677 37.500 7.92 0.00 32.99 3.01
975 1009 5.242393 ACATCAATCGATTCCATCAAATCCC 59.758 40.000 7.92 0.00 32.99 3.85
976 1010 5.052693 TCAATCGATTCCATCAAATCCCT 57.947 39.130 7.92 0.00 32.99 4.20
977 1011 5.065914 TCAATCGATTCCATCAAATCCCTC 58.934 41.667 7.92 0.00 32.99 4.30
978 1012 4.989875 ATCGATTCCATCAAATCCCTCT 57.010 40.909 0.00 0.00 32.99 3.69
979 1013 4.342862 TCGATTCCATCAAATCCCTCTC 57.657 45.455 0.00 0.00 32.99 3.20
980 1014 3.969976 TCGATTCCATCAAATCCCTCTCT 59.030 43.478 0.00 0.00 32.99 3.10
981 1015 4.039730 TCGATTCCATCAAATCCCTCTCTC 59.960 45.833 0.00 0.00 32.99 3.20
982 1016 4.650734 GATTCCATCAAATCCCTCTCTCC 58.349 47.826 0.00 0.00 30.82 3.71
983 1017 3.428063 TCCATCAAATCCCTCTCTCCT 57.572 47.619 0.00 0.00 0.00 3.69
984 1018 3.740780 TCCATCAAATCCCTCTCTCCTT 58.259 45.455 0.00 0.00 0.00 3.36
985 1019 4.114597 TCCATCAAATCCCTCTCTCCTTT 58.885 43.478 0.00 0.00 0.00 3.11
986 1020 4.164988 TCCATCAAATCCCTCTCTCCTTTC 59.835 45.833 0.00 0.00 0.00 2.62
987 1021 4.165758 CCATCAAATCCCTCTCTCCTTTCT 59.834 45.833 0.00 0.00 0.00 2.52
988 1022 5.367937 CCATCAAATCCCTCTCTCCTTTCTA 59.632 44.000 0.00 0.00 0.00 2.10
989 1023 6.126652 CCATCAAATCCCTCTCTCCTTTCTAA 60.127 42.308 0.00 0.00 0.00 2.10
990 1024 6.301169 TCAAATCCCTCTCTCCTTTCTAAC 57.699 41.667 0.00 0.00 0.00 2.34
991 1025 5.785423 TCAAATCCCTCTCTCCTTTCTAACA 59.215 40.000 0.00 0.00 0.00 2.41
992 1026 6.272324 TCAAATCCCTCTCTCCTTTCTAACAA 59.728 38.462 0.00 0.00 0.00 2.83
993 1027 6.704056 AATCCCTCTCTCCTTTCTAACAAA 57.296 37.500 0.00 0.00 0.00 2.83
1095 1144 5.389520 CTTCCTTCCTTCCTTCCTTCTTTT 58.610 41.667 0.00 0.00 0.00 2.27
1097 1146 4.415512 TCCTTCCTTCCTTCCTTCTTTTCA 59.584 41.667 0.00 0.00 0.00 2.69
1148 1205 1.416030 TCACACCCACCCATCATATCG 59.584 52.381 0.00 0.00 0.00 2.92
1182 1245 1.973812 GGAGCAGAGCAACCAACCC 60.974 63.158 0.00 0.00 0.00 4.11
1390 1479 1.740380 GCTTCCAGCTCGACTGCAATA 60.740 52.381 8.85 0.00 45.78 1.90
1883 2002 0.179040 GACGGTCAAACCTCCCACAA 60.179 55.000 2.62 0.00 35.66 3.33
1900 2019 0.309302 CAATTTCGTCAACCGCACCA 59.691 50.000 0.00 0.00 36.19 4.17
2082 2201 1.004200 CGACGGCAACCCTTACCTT 60.004 57.895 0.00 0.00 0.00 3.50
2133 2265 1.652563 CTGACACGGTCGAGTCACA 59.347 57.895 16.93 1.90 39.92 3.58
2134 2266 0.660595 CTGACACGGTCGAGTCACAC 60.661 60.000 16.93 0.00 39.92 3.82
2135 2267 1.724929 GACACGGTCGAGTCACACG 60.725 63.158 14.15 0.00 36.11 4.49
2136 2268 2.109538 GACACGGTCGAGTCACACGA 62.110 60.000 14.15 0.00 36.11 4.35
2155 2287 6.913132 CACACGACACCAACATTTTATTGTAA 59.087 34.615 0.00 0.00 0.00 2.41
2156 2288 7.432545 CACACGACACCAACATTTTATTGTAAA 59.567 33.333 0.00 0.00 0.00 2.01
2158 2290 8.423973 CACGACACCAACATTTTATTGTAAATG 58.576 33.333 7.36 7.36 46.20 2.32
2180 2312 8.961294 AATGTAGTAGTGTTACGTTACTTCAG 57.039 34.615 6.24 0.00 34.88 3.02
2181 2313 6.902341 TGTAGTAGTGTTACGTTACTTCAGG 58.098 40.000 6.24 0.00 34.88 3.86
2182 2314 6.710295 TGTAGTAGTGTTACGTTACTTCAGGA 59.290 38.462 6.24 0.00 34.88 3.86
2183 2315 6.251655 AGTAGTGTTACGTTACTTCAGGAG 57.748 41.667 6.24 0.00 34.88 3.69
2184 2316 4.516365 AGTGTTACGTTACTTCAGGAGG 57.484 45.455 6.24 0.00 0.00 4.30
2185 2317 3.257624 AGTGTTACGTTACTTCAGGAGGG 59.742 47.826 6.24 0.00 0.00 4.30
2186 2318 2.564062 TGTTACGTTACTTCAGGAGGGG 59.436 50.000 6.24 0.00 0.00 4.79
2187 2319 2.827921 GTTACGTTACTTCAGGAGGGGA 59.172 50.000 0.00 0.00 0.00 4.81
2188 2320 2.019807 ACGTTACTTCAGGAGGGGAA 57.980 50.000 0.00 0.00 0.00 3.97
2189 2321 1.622312 ACGTTACTTCAGGAGGGGAAC 59.378 52.381 0.00 0.00 0.00 3.62
2190 2322 1.403780 CGTTACTTCAGGAGGGGAACG 60.404 57.143 7.19 7.19 35.36 3.95
2191 2323 1.622312 GTTACTTCAGGAGGGGAACGT 59.378 52.381 0.00 0.00 0.00 3.99
2192 2324 2.019807 TACTTCAGGAGGGGAACGTT 57.980 50.000 0.00 0.00 0.00 3.99
2193 2325 1.137697 ACTTCAGGAGGGGAACGTTT 58.862 50.000 0.46 0.00 0.00 3.60
2194 2326 1.202770 ACTTCAGGAGGGGAACGTTTG 60.203 52.381 0.46 0.00 0.00 2.93
2195 2327 0.109723 TTCAGGAGGGGAACGTTTGG 59.890 55.000 0.46 0.00 0.00 3.28
2196 2328 1.057851 TCAGGAGGGGAACGTTTGGT 61.058 55.000 0.46 0.00 0.00 3.67
2197 2329 0.179001 CAGGAGGGGAACGTTTGGTT 60.179 55.000 0.46 0.00 42.96 3.67
2207 2339 3.495434 AACGTTTGGTTCCTGGATACA 57.505 42.857 0.00 0.00 38.54 2.29
2208 2340 4.028993 AACGTTTGGTTCCTGGATACAT 57.971 40.909 0.00 0.00 39.96 2.29
2209 2341 5.168647 AACGTTTGGTTCCTGGATACATA 57.831 39.130 0.00 0.00 39.96 2.29
2210 2342 5.751586 AACGTTTGGTTCCTGGATACATAT 58.248 37.500 0.00 0.00 39.96 1.78
2211 2343 5.588648 AACGTTTGGTTCCTGGATACATATG 59.411 40.000 0.00 0.00 39.96 1.78
2212 2344 6.802416 AACGTTTGGTTCCTGGATACATATGT 60.802 38.462 13.93 13.93 39.96 2.29
2213 2345 7.581853 AACGTTTGGTTCCTGGATACATATGTA 60.582 37.037 17.65 17.65 39.96 2.29
2225 2357 8.058667 TGGATACATATGTACCTTGTATACGG 57.941 38.462 17.69 0.00 46.17 4.02
2226 2358 7.889600 TGGATACATATGTACCTTGTATACGGA 59.110 37.037 17.69 0.00 46.17 4.69
2227 2359 8.742777 GGATACATATGTACCTTGTATACGGAA 58.257 37.037 17.69 0.00 36.85 4.30
2231 2363 9.841295 ACATATGTACCTTGTATACGGAAAAAT 57.159 29.630 6.56 0.00 0.00 1.82
2239 2371 9.398538 ACCTTGTATACGGAAAAATAATTAGCA 57.601 29.630 4.03 0.00 0.00 3.49
2248 2380 9.482627 ACGGAAAAATAATTAGCAATTCAACAA 57.517 25.926 0.00 0.00 32.38 2.83
2262 2394 9.911138 AGCAATTCAACAAAAAGTCAAAATTTT 57.089 22.222 0.00 0.00 0.00 1.82
2307 2439 7.730364 AACTTGACCTTTCATTGTACTAGTG 57.270 36.000 5.39 0.00 0.00 2.74
2308 2440 7.062749 ACTTGACCTTTCATTGTACTAGTGA 57.937 36.000 5.39 0.00 0.00 3.41
2309 2441 7.155328 ACTTGACCTTTCATTGTACTAGTGAG 58.845 38.462 5.39 0.00 0.00 3.51
2310 2442 6.911250 TGACCTTTCATTGTACTAGTGAGA 57.089 37.500 5.39 0.00 0.00 3.27
2311 2443 7.297936 TGACCTTTCATTGTACTAGTGAGAA 57.702 36.000 5.39 0.00 0.00 2.87
2312 2444 7.732025 TGACCTTTCATTGTACTAGTGAGAAA 58.268 34.615 5.39 7.55 0.00 2.52
2313 2445 8.208224 TGACCTTTCATTGTACTAGTGAGAAAA 58.792 33.333 5.39 0.00 0.00 2.29
2314 2446 8.608844 ACCTTTCATTGTACTAGTGAGAAAAG 57.391 34.615 5.39 7.74 0.00 2.27
2315 2447 8.211629 ACCTTTCATTGTACTAGTGAGAAAAGT 58.788 33.333 5.39 5.87 0.00 2.66
2316 2448 9.057089 CCTTTCATTGTACTAGTGAGAAAAGTT 57.943 33.333 5.39 0.00 0.00 2.66
2319 2451 9.607988 TTCATTGTACTAGTGAGAAAAGTTTCA 57.392 29.630 5.39 0.00 39.61 2.69
2320 2452 9.778741 TCATTGTACTAGTGAGAAAAGTTTCAT 57.221 29.630 5.39 0.00 39.61 2.57
2379 2511 8.911247 AAAGACAAATTATCGGTCAAAATAGC 57.089 30.769 0.00 0.00 34.04 2.97
2380 2512 7.624360 AGACAAATTATCGGTCAAAATAGCA 57.376 32.000 0.00 0.00 34.04 3.49
2381 2513 8.225603 AGACAAATTATCGGTCAAAATAGCAT 57.774 30.769 0.00 0.00 34.04 3.79
2382 2514 8.131100 AGACAAATTATCGGTCAAAATAGCATG 58.869 33.333 0.00 0.00 34.04 4.06
2383 2515 7.995289 ACAAATTATCGGTCAAAATAGCATGA 58.005 30.769 0.00 0.00 0.00 3.07
2384 2516 8.465999 ACAAATTATCGGTCAAAATAGCATGAA 58.534 29.630 0.00 0.00 0.00 2.57
2385 2517 9.467258 CAAATTATCGGTCAAAATAGCATGAAT 57.533 29.630 0.00 0.00 0.00 2.57
2388 2520 8.902540 TTATCGGTCAAAATAGCATGAATAGT 57.097 30.769 0.00 0.00 0.00 2.12
2389 2521 6.603237 TCGGTCAAAATAGCATGAATAGTG 57.397 37.500 0.00 0.00 0.00 2.74
2390 2522 6.345298 TCGGTCAAAATAGCATGAATAGTGA 58.655 36.000 0.00 0.00 0.00 3.41
2391 2523 6.257849 TCGGTCAAAATAGCATGAATAGTGAC 59.742 38.462 0.00 6.44 33.70 3.67
2392 2524 6.511767 CGGTCAAAATAGCATGAATAGTGACC 60.512 42.308 20.37 20.37 45.82 4.02
2393 2525 6.543831 GGTCAAAATAGCATGAATAGTGACCT 59.456 38.462 21.62 3.79 45.82 3.85
2394 2526 7.715249 GGTCAAAATAGCATGAATAGTGACCTA 59.285 37.037 21.62 5.38 45.82 3.08
2395 2527 9.277783 GTCAAAATAGCATGAATAGTGACCTAT 57.722 33.333 0.00 0.00 35.33 2.57
2402 2534 8.138928 AGCATGAATAGTGACCTATAATAGCA 57.861 34.615 0.00 0.00 32.57 3.49
2403 2535 8.597167 AGCATGAATAGTGACCTATAATAGCAA 58.403 33.333 0.00 0.00 32.57 3.91
2404 2536 9.219603 GCATGAATAGTGACCTATAATAGCAAA 57.780 33.333 0.00 0.00 32.57 3.68
2425 2557 9.701355 AGCAAATAAATTTTGTCTTTTTCGTTG 57.299 25.926 0.00 0.00 0.00 4.10
2426 2558 9.484326 GCAAATAAATTTTGTCTTTTTCGTTGT 57.516 25.926 0.00 0.00 0.00 3.32
2431 2563 7.883229 AATTTTGTCTTTTTCGTTGTGAAGT 57.117 28.000 0.00 0.00 37.99 3.01
2442 2574 4.133820 TCGTTGTGAAGTCAACATTGGAT 58.866 39.130 9.60 0.00 45.28 3.41
2444 2576 5.067153 TCGTTGTGAAGTCAACATTGGATTT 59.933 36.000 9.60 0.00 45.28 2.17
2446 2578 6.255453 CGTTGTGAAGTCAACATTGGATTTTT 59.745 34.615 9.60 0.00 45.28 1.94
2473 2605 9.710979 TTTGTGAAAATTTATATACTAGTGCGC 57.289 29.630 5.39 0.00 0.00 6.09
2474 2606 8.426881 TGTGAAAATTTATATACTAGTGCGCA 57.573 30.769 5.66 5.66 0.00 6.09
2475 2607 8.884726 TGTGAAAATTTATATACTAGTGCGCAA 58.115 29.630 14.00 0.00 0.00 4.85
2476 2608 9.370126 GTGAAAATTTATATACTAGTGCGCAAG 57.630 33.333 14.00 10.16 43.44 4.01
2477 2609 9.104965 TGAAAATTTATATACTAGTGCGCAAGT 57.895 29.630 14.00 16.58 41.68 3.16
2481 2613 9.760077 AATTTATATACTAGTGCGCAAGTAAGT 57.240 29.630 22.10 19.00 41.68 2.24
2482 2614 8.792831 TTTATATACTAGTGCGCAAGTAAGTC 57.207 34.615 22.10 5.00 41.68 3.01
2483 2615 4.713824 ATACTAGTGCGCAAGTAAGTCA 57.286 40.909 22.10 5.27 41.68 3.41
2484 2616 3.380479 ACTAGTGCGCAAGTAAGTCAA 57.620 42.857 14.00 0.00 41.68 3.18
2485 2617 3.318017 ACTAGTGCGCAAGTAAGTCAAG 58.682 45.455 14.00 1.66 41.68 3.02
2486 2618 2.240493 AGTGCGCAAGTAAGTCAAGT 57.760 45.000 14.00 0.00 41.68 3.16
2487 2619 2.561569 AGTGCGCAAGTAAGTCAAGTT 58.438 42.857 14.00 0.00 41.68 2.66
2488 2620 2.943033 AGTGCGCAAGTAAGTCAAGTTT 59.057 40.909 14.00 0.00 41.68 2.66
2489 2621 4.124238 AGTGCGCAAGTAAGTCAAGTTTA 58.876 39.130 14.00 0.00 41.68 2.01
2490 2622 4.573201 AGTGCGCAAGTAAGTCAAGTTTAA 59.427 37.500 14.00 0.00 41.68 1.52
2491 2623 5.238650 AGTGCGCAAGTAAGTCAAGTTTAAT 59.761 36.000 14.00 0.00 41.68 1.40
2492 2624 5.564127 GTGCGCAAGTAAGTCAAGTTTAATC 59.436 40.000 14.00 0.00 41.68 1.75
2496 2628 8.013378 GCGCAAGTAAGTCAAGTTTAATCTAAA 58.987 33.333 0.30 0.00 41.68 1.85
2570 2702 8.134202 TCCATATAGGATGTATATAATGCGGG 57.866 38.462 0.00 0.00 43.07 6.13
2571 2703 7.953493 TCCATATAGGATGTATATAATGCGGGA 59.047 37.037 0.00 0.00 43.07 5.14
2572 2704 8.253810 CCATATAGGATGTATATAATGCGGGAG 58.746 40.741 0.00 0.00 41.22 4.30
2829 3025 4.218312 AGTTCACCTTGGCTCTCAAAATT 58.782 39.130 0.00 0.00 34.56 1.82
2863 3129 0.179134 CACGGATCTTGGGTCGTCTC 60.179 60.000 0.00 0.00 33.31 3.36
2865 3131 1.654954 CGGATCTTGGGTCGTCTCGT 61.655 60.000 0.00 0.00 0.00 4.18
2866 3132 0.179134 GGATCTTGGGTCGTCTCGTG 60.179 60.000 0.00 0.00 0.00 4.35
3004 4520 0.320160 GAGTTAGCGTCGGGGTGTTT 60.320 55.000 0.00 0.00 0.00 2.83
3073 4589 1.624336 AGCTCATCAAGGCAAAGCAA 58.376 45.000 0.00 0.00 35.42 3.91
3186 4713 6.240894 AGATATACTCAGAAGAGGAGCTCAG 58.759 44.000 17.19 3.88 46.44 3.35
3559 5094 1.886542 TCGTATATGCACTCATCGGCT 59.113 47.619 0.00 0.00 34.22 5.52
3595 5132 2.125512 GGCGATGTCAAGACGGCT 60.126 61.111 13.54 0.00 46.12 5.52
3923 5465 0.985490 GGTGAGGAAGGAGATGGGCT 60.985 60.000 0.00 0.00 0.00 5.19
4138 5692 9.745880 CGTGATGTGACTTATAAGTTTATACCT 57.254 33.333 18.96 9.31 39.88 3.08
4184 5739 4.080582 AGGGCAGTACATACACATTTAGCA 60.081 41.667 0.00 0.00 0.00 3.49
4316 5871 6.265422 CACCCCAGATCCTTAATAACATTTCC 59.735 42.308 0.00 0.00 0.00 3.13
4423 5978 4.743151 GTGTTGACGAGTGTCTTGATACAA 59.257 41.667 0.00 0.00 45.70 2.41
4439 5994 8.664798 TCTTGATACAAAAATATGTTGAGACCG 58.335 33.333 6.44 0.00 34.75 4.79
4469 6024 1.731098 CGGGGACTTTATTTGTTGCGC 60.731 52.381 0.00 0.00 0.00 6.09
4478 6033 2.036556 ATTTGTTGCGCTCTGAAACG 57.963 45.000 9.73 0.00 0.00 3.60
4520 6075 2.363306 AGTGCACCTCATCCAAACAA 57.637 45.000 14.63 0.00 0.00 2.83
4576 6131 7.125204 TGGCGCCTATATACATACCTTTCTATT 59.875 37.037 29.70 0.00 0.00 1.73
4617 6172 6.806668 ATAAAAATGGGAACTTATGGGGTG 57.193 37.500 0.00 0.00 0.00 4.61
4622 6177 1.340697 GGGAACTTATGGGGTGGACAC 60.341 57.143 0.00 0.00 0.00 3.67
4628 6183 3.008704 ACTTATGGGGTGGACACTTACAC 59.991 47.826 2.13 0.00 36.89 2.90
4639 6194 6.196571 GTGGACACTTACACATTTTGTACAC 58.803 40.000 0.00 0.00 43.03 2.90
4656 6211 3.806949 ACACAGGTGTTACCATTGGAT 57.193 42.857 10.37 0.00 41.83 3.41
4657 6212 4.112634 ACACAGGTGTTACCATTGGATT 57.887 40.909 10.37 0.00 41.83 3.01
4659 6214 5.826643 ACACAGGTGTTACCATTGGATTAT 58.173 37.500 10.37 0.00 41.83 1.28
4703 6258 3.226777 TGTTGGTTTGAGTGGGGTATTG 58.773 45.455 0.00 0.00 0.00 1.90
4705 6260 3.603965 TGGTTTGAGTGGGGTATTGTT 57.396 42.857 0.00 0.00 0.00 2.83
4718 6273 7.998964 AGTGGGGTATTGTTTTTCTATAGATGG 59.001 37.037 2.58 0.00 0.00 3.51
4740 6295 9.841880 GATGGAAAAGAGGTATAAGAAAACAAC 57.158 33.333 0.00 0.00 0.00 3.32
4766 6321 6.608610 ACGCAAGATGTACTTCCATAAAAAC 58.391 36.000 5.19 0.00 43.62 2.43
4774 6329 2.111792 ACTTCCATAAAAACCAGGGCCT 59.888 45.455 0.00 0.00 0.00 5.19
4784 6339 0.853530 ACCAGGGCCTTCTTGAAAGT 59.146 50.000 1.32 0.00 0.00 2.66
4911 6466 4.359971 TTGGATGAATTGATGCAAGTCG 57.640 40.909 7.71 0.00 40.66 4.18
5152 8451 3.197265 GTTGACACAAAATTGCTGCCTT 58.803 40.909 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
453 459 3.491964 CGAAGTAGGCGATAATGAACCCA 60.492 47.826 0.00 0.00 0.00 4.51
736 763 1.398041 CCACAGTCGTAACGGTCGATA 59.602 52.381 0.00 0.00 39.45 2.92
780 809 2.478709 CGGTGAGACTGGAGAAGAATCG 60.479 54.545 0.00 0.00 0.00 3.34
826 855 7.872061 ATACATTATACTCAACATCCCTCCA 57.128 36.000 0.00 0.00 0.00 3.86
885 919 8.062065 ACCAAATTGAAGTACAAGACAAGAAA 57.938 30.769 0.00 0.00 42.02 2.52
886 920 7.338196 TGACCAAATTGAAGTACAAGACAAGAA 59.662 33.333 0.00 0.00 42.02 2.52
887 921 6.826231 TGACCAAATTGAAGTACAAGACAAGA 59.174 34.615 0.00 0.00 42.02 3.02
899 933 6.824305 AGGAGTACAATGACCAAATTGAAG 57.176 37.500 4.04 0.00 39.46 3.02
907 941 8.924303 GGCATATATATAGGAGTACAATGACCA 58.076 37.037 8.56 0.00 0.00 4.02
908 942 8.082852 CGGCATATATATAGGAGTACAATGACC 58.917 40.741 8.56 0.92 0.00 4.02
909 943 8.847196 TCGGCATATATATAGGAGTACAATGAC 58.153 37.037 8.56 0.00 0.00 3.06
910 944 8.847196 GTCGGCATATATATAGGAGTACAATGA 58.153 37.037 8.56 0.00 0.00 2.57
911 945 7.803659 CGTCGGCATATATATAGGAGTACAATG 59.196 40.741 8.56 0.00 0.00 2.82
912 946 7.718314 TCGTCGGCATATATATAGGAGTACAAT 59.282 37.037 8.56 0.00 0.00 2.71
913 947 7.049754 TCGTCGGCATATATATAGGAGTACAA 58.950 38.462 8.56 0.00 0.00 2.41
914 948 6.585416 TCGTCGGCATATATATAGGAGTACA 58.415 40.000 8.56 0.00 0.00 2.90
915 949 6.147492 CCTCGTCGGCATATATATAGGAGTAC 59.853 46.154 8.56 2.01 0.00 2.73
916 950 6.228995 CCTCGTCGGCATATATATAGGAGTA 58.771 44.000 8.56 0.00 0.00 2.59
917 951 5.064558 CCTCGTCGGCATATATATAGGAGT 58.935 45.833 8.56 0.00 0.00 3.85
918 952 5.614923 CCTCGTCGGCATATATATAGGAG 57.385 47.826 8.56 1.89 0.00 3.69
932 966 1.659098 GTATTGTTTGAGCCTCGTCGG 59.341 52.381 0.00 0.00 0.00 4.79
933 967 2.333926 TGTATTGTTTGAGCCTCGTCG 58.666 47.619 0.00 0.00 0.00 5.12
934 968 3.932710 TGATGTATTGTTTGAGCCTCGTC 59.067 43.478 0.00 0.00 0.00 4.20
935 969 3.937814 TGATGTATTGTTTGAGCCTCGT 58.062 40.909 0.00 0.00 0.00 4.18
936 970 4.944962 TTGATGTATTGTTTGAGCCTCG 57.055 40.909 0.00 0.00 0.00 4.63
937 971 5.294306 TCGATTGATGTATTGTTTGAGCCTC 59.706 40.000 0.00 0.00 0.00 4.70
938 972 5.185454 TCGATTGATGTATTGTTTGAGCCT 58.815 37.500 0.00 0.00 0.00 4.58
939 973 5.484173 TCGATTGATGTATTGTTTGAGCC 57.516 39.130 0.00 0.00 0.00 4.70
940 974 6.634436 GGAATCGATTGATGTATTGTTTGAGC 59.366 38.462 16.96 0.00 34.24 4.26
941 975 7.696755 TGGAATCGATTGATGTATTGTTTGAG 58.303 34.615 16.96 0.00 34.24 3.02
942 976 7.622893 TGGAATCGATTGATGTATTGTTTGA 57.377 32.000 16.96 0.00 34.24 2.69
943 977 8.498192 GATGGAATCGATTGATGTATTGTTTG 57.502 34.615 16.96 0.00 34.24 2.93
960 994 4.350520 AGGAGAGAGGGATTTGATGGAATC 59.649 45.833 0.00 0.00 45.83 2.52
961 995 4.314238 AGGAGAGAGGGATTTGATGGAAT 58.686 43.478 0.00 0.00 0.00 3.01
962 996 3.740780 AGGAGAGAGGGATTTGATGGAA 58.259 45.455 0.00 0.00 0.00 3.53
963 997 3.428063 AGGAGAGAGGGATTTGATGGA 57.572 47.619 0.00 0.00 0.00 3.41
964 998 4.165758 AGAAAGGAGAGAGGGATTTGATGG 59.834 45.833 0.00 0.00 0.00 3.51
965 999 5.370875 AGAAAGGAGAGAGGGATTTGATG 57.629 43.478 0.00 0.00 0.00 3.07
966 1000 6.445139 TGTTAGAAAGGAGAGAGGGATTTGAT 59.555 38.462 0.00 0.00 0.00 2.57
967 1001 5.785423 TGTTAGAAAGGAGAGAGGGATTTGA 59.215 40.000 0.00 0.00 0.00 2.69
968 1002 6.054860 TGTTAGAAAGGAGAGAGGGATTTG 57.945 41.667 0.00 0.00 0.00 2.32
969 1003 6.704056 TTGTTAGAAAGGAGAGAGGGATTT 57.296 37.500 0.00 0.00 0.00 2.17
970 1004 6.704056 TTTGTTAGAAAGGAGAGAGGGATT 57.296 37.500 0.00 0.00 0.00 3.01
971 1005 6.704056 TTTTGTTAGAAAGGAGAGAGGGAT 57.296 37.500 0.00 0.00 0.00 3.85
972 1006 6.509523 TTTTTGTTAGAAAGGAGAGAGGGA 57.490 37.500 0.00 0.00 0.00 4.20
1002 1036 0.666374 CCAACTTGTCAAACGGGTCC 59.334 55.000 0.00 0.00 0.00 4.46
1005 1039 1.107945 AACCCAACTTGTCAAACGGG 58.892 50.000 10.67 10.67 39.72 5.28
1009 1043 0.827368 GCCCAACCCAACTTGTCAAA 59.173 50.000 0.00 0.00 0.00 2.69
1120 1169 1.656818 GGGTGGGTGTGAATGCGATG 61.657 60.000 0.00 0.00 0.00 3.84
1148 1205 4.275196 TCTGCTCCGATATATACATACGCC 59.725 45.833 0.00 0.00 0.00 5.68
1182 1245 0.592637 TGCTTGACATGCTTTCCACG 59.407 50.000 13.81 0.00 0.00 4.94
1383 1472 1.823899 GGGGCCGGAGTTATTGCAG 60.824 63.158 5.05 0.00 0.00 4.41
1734 1847 4.823419 TCGGCGCCGTTGGGTATG 62.823 66.667 44.16 17.22 40.74 2.39
2133 2265 8.514136 CATTTACAATAAAATGTTGGTGTCGT 57.486 30.769 1.98 0.00 40.44 4.34
2155 2287 8.025445 CCTGAAGTAACGTAACACTACTACATT 58.975 37.037 0.00 0.00 0.00 2.71
2156 2288 7.391554 TCCTGAAGTAACGTAACACTACTACAT 59.608 37.037 0.00 0.00 0.00 2.29
2158 2290 7.133891 TCCTGAAGTAACGTAACACTACTAC 57.866 40.000 0.00 0.00 0.00 2.73
2159 2291 6.372659 CCTCCTGAAGTAACGTAACACTACTA 59.627 42.308 0.00 0.00 0.00 1.82
2160 2292 5.182760 CCTCCTGAAGTAACGTAACACTACT 59.817 44.000 0.00 0.00 0.00 2.57
2167 2299 3.173953 TCCCCTCCTGAAGTAACGTAA 57.826 47.619 0.00 0.00 0.00 3.18
2168 2300 2.827921 GTTCCCCTCCTGAAGTAACGTA 59.172 50.000 0.00 0.00 0.00 3.57
2169 2301 1.622312 GTTCCCCTCCTGAAGTAACGT 59.378 52.381 0.00 0.00 0.00 3.99
2170 2302 1.403780 CGTTCCCCTCCTGAAGTAACG 60.404 57.143 0.00 0.00 31.67 3.18
2171 2303 1.622312 ACGTTCCCCTCCTGAAGTAAC 59.378 52.381 0.00 0.00 0.00 2.50
2172 2304 2.019807 ACGTTCCCCTCCTGAAGTAA 57.980 50.000 0.00 0.00 0.00 2.24
2173 2305 2.019807 AACGTTCCCCTCCTGAAGTA 57.980 50.000 0.00 0.00 0.00 2.24
2174 2306 1.137697 AAACGTTCCCCTCCTGAAGT 58.862 50.000 0.00 0.00 0.00 3.01
2175 2307 1.523758 CAAACGTTCCCCTCCTGAAG 58.476 55.000 0.00 0.00 0.00 3.02
2176 2308 0.109723 CCAAACGTTCCCCTCCTGAA 59.890 55.000 0.00 0.00 0.00 3.02
2177 2309 1.057851 ACCAAACGTTCCCCTCCTGA 61.058 55.000 0.00 0.00 0.00 3.86
2178 2310 0.179001 AACCAAACGTTCCCCTCCTG 60.179 55.000 0.00 0.00 0.00 3.86
2179 2311 0.109913 GAACCAAACGTTCCCCTCCT 59.890 55.000 0.00 0.00 44.46 3.69
2180 2312 2.637521 GAACCAAACGTTCCCCTCC 58.362 57.895 0.00 0.00 44.46 4.30
2187 2319 3.495434 TGTATCCAGGAACCAAACGTT 57.505 42.857 0.00 0.00 37.41 3.99
2188 2320 3.713826 ATGTATCCAGGAACCAAACGT 57.286 42.857 0.00 0.00 0.00 3.99
2189 2321 5.123227 ACATATGTATCCAGGAACCAAACG 58.877 41.667 6.56 0.00 0.00 3.60
2190 2322 6.485648 GGTACATATGTATCCAGGAACCAAAC 59.514 42.308 18.27 3.29 32.54 2.93
2191 2323 6.388689 AGGTACATATGTATCCAGGAACCAAA 59.611 38.462 20.28 0.00 32.14 3.28
2192 2324 5.908831 AGGTACATATGTATCCAGGAACCAA 59.091 40.000 20.28 0.00 32.14 3.67
2193 2325 5.473273 AGGTACATATGTATCCAGGAACCA 58.527 41.667 20.28 0.00 32.14 3.67
2194 2326 6.183361 ACAAGGTACATATGTATCCAGGAACC 60.183 42.308 20.28 15.30 32.14 3.62
2195 2327 6.827727 ACAAGGTACATATGTATCCAGGAAC 58.172 40.000 20.28 7.43 32.14 3.62
2196 2328 8.736097 ATACAAGGTACATATGTATCCAGGAA 57.264 34.615 20.28 8.28 35.87 3.36
2197 2329 9.251440 GTATACAAGGTACATATGTATCCAGGA 57.749 37.037 20.28 11.64 39.99 3.86
2198 2330 8.188799 CGTATACAAGGTACATATGTATCCAGG 58.811 40.741 20.28 17.34 39.99 4.45
2199 2331 8.188799 CCGTATACAAGGTACATATGTATCCAG 58.811 40.741 20.28 15.63 39.99 3.86
2200 2332 7.889600 TCCGTATACAAGGTACATATGTATCCA 59.110 37.037 20.28 6.24 39.99 3.41
2201 2333 8.284945 TCCGTATACAAGGTACATATGTATCC 57.715 38.462 20.28 19.56 39.99 2.59
2205 2337 9.841295 ATTTTTCCGTATACAAGGTACATATGT 57.159 29.630 13.93 13.93 0.00 2.29
2213 2345 9.398538 TGCTAATTATTTTTCCGTATACAAGGT 57.601 29.630 3.32 0.00 0.00 3.50
2222 2354 9.482627 TTGTTGAATTGCTAATTATTTTTCCGT 57.517 25.926 0.00 0.00 0.00 4.69
2236 2368 9.911138 AAAATTTTGACTTTTTGTTGAATTGCT 57.089 22.222 1.75 0.00 0.00 3.91
2281 2413 9.268268 CACTAGTACAATGAAAGGTCAAGTTTA 57.732 33.333 0.00 0.00 37.30 2.01
2282 2414 7.990886 TCACTAGTACAATGAAAGGTCAAGTTT 59.009 33.333 0.00 0.00 37.30 2.66
2283 2415 7.506114 TCACTAGTACAATGAAAGGTCAAGTT 58.494 34.615 0.00 0.00 37.30 2.66
2284 2416 7.015292 TCTCACTAGTACAATGAAAGGTCAAGT 59.985 37.037 0.00 0.00 37.30 3.16
2285 2417 7.378966 TCTCACTAGTACAATGAAAGGTCAAG 58.621 38.462 0.00 0.00 37.30 3.02
2286 2418 7.297936 TCTCACTAGTACAATGAAAGGTCAA 57.702 36.000 0.00 0.00 37.30 3.18
2287 2419 6.911250 TCTCACTAGTACAATGAAAGGTCA 57.089 37.500 0.00 0.00 38.41 4.02
2288 2420 8.603242 TTTTCTCACTAGTACAATGAAAGGTC 57.397 34.615 0.00 0.00 0.00 3.85
2289 2421 8.211629 ACTTTTCTCACTAGTACAATGAAAGGT 58.788 33.333 0.00 6.20 31.01 3.50
2290 2422 8.608844 ACTTTTCTCACTAGTACAATGAAAGG 57.391 34.615 0.00 5.64 0.00 3.11
2293 2425 9.607988 TGAAACTTTTCTCACTAGTACAATGAA 57.392 29.630 0.00 0.00 38.02 2.57
2294 2426 9.778741 ATGAAACTTTTCTCACTAGTACAATGA 57.221 29.630 0.00 0.00 38.02 2.57
2353 2485 9.353999 GCTATTTTGACCGATAATTTGTCTTTT 57.646 29.630 0.00 0.00 0.00 2.27
2354 2486 8.519526 TGCTATTTTGACCGATAATTTGTCTTT 58.480 29.630 0.00 0.00 0.00 2.52
2355 2487 8.050778 TGCTATTTTGACCGATAATTTGTCTT 57.949 30.769 0.00 0.00 0.00 3.01
2356 2488 7.624360 TGCTATTTTGACCGATAATTTGTCT 57.376 32.000 0.00 0.00 0.00 3.41
2357 2489 8.128582 TCATGCTATTTTGACCGATAATTTGTC 58.871 33.333 0.00 0.00 0.00 3.18
2358 2490 7.995289 TCATGCTATTTTGACCGATAATTTGT 58.005 30.769 0.00 0.00 0.00 2.83
2359 2491 8.854979 TTCATGCTATTTTGACCGATAATTTG 57.145 30.769 0.00 0.00 0.00 2.32
2362 2494 9.507329 ACTATTCATGCTATTTTGACCGATAAT 57.493 29.630 0.00 0.00 0.00 1.28
2363 2495 8.773645 CACTATTCATGCTATTTTGACCGATAA 58.226 33.333 0.00 0.00 0.00 1.75
2364 2496 8.147704 TCACTATTCATGCTATTTTGACCGATA 58.852 33.333 0.00 0.00 0.00 2.92
2365 2497 6.992123 TCACTATTCATGCTATTTTGACCGAT 59.008 34.615 0.00 0.00 0.00 4.18
2366 2498 6.257849 GTCACTATTCATGCTATTTTGACCGA 59.742 38.462 0.00 0.00 0.00 4.69
2367 2499 6.422223 GTCACTATTCATGCTATTTTGACCG 58.578 40.000 0.00 0.00 0.00 4.79
2368 2500 6.729187 GGTCACTATTCATGCTATTTTGACC 58.271 40.000 13.15 13.15 42.64 4.02
2369 2501 7.559590 AGGTCACTATTCATGCTATTTTGAC 57.440 36.000 0.00 0.00 0.00 3.18
2376 2508 9.255029 TGCTATTATAGGTCACTATTCATGCTA 57.745 33.333 1.12 0.00 40.35 3.49
2377 2509 8.138928 TGCTATTATAGGTCACTATTCATGCT 57.861 34.615 1.12 0.00 40.35 3.79
2378 2510 8.777865 TTGCTATTATAGGTCACTATTCATGC 57.222 34.615 1.12 0.00 40.35 4.06
2399 2531 9.701355 CAACGAAAAAGACAAAATTTATTTGCT 57.299 25.926 0.00 0.00 32.93 3.91
2400 2532 9.484326 ACAACGAAAAAGACAAAATTTATTTGC 57.516 25.926 0.00 0.00 32.93 3.68
2405 2537 9.413048 ACTTCACAACGAAAAAGACAAAATTTA 57.587 25.926 0.00 0.00 31.71 1.40
2406 2538 8.305441 ACTTCACAACGAAAAAGACAAAATTT 57.695 26.923 0.00 0.00 31.71 1.82
2407 2539 7.596995 TGACTTCACAACGAAAAAGACAAAATT 59.403 29.630 0.00 0.00 31.71 1.82
2408 2540 7.087639 TGACTTCACAACGAAAAAGACAAAAT 58.912 30.769 0.00 0.00 31.71 1.82
2409 2541 6.439599 TGACTTCACAACGAAAAAGACAAAA 58.560 32.000 0.00 0.00 31.71 2.44
2410 2542 6.003234 TGACTTCACAACGAAAAAGACAAA 57.997 33.333 0.00 0.00 31.71 2.83
2411 2543 5.614923 TGACTTCACAACGAAAAAGACAA 57.385 34.783 0.00 0.00 31.71 3.18
2412 2544 5.387279 GTTGACTTCACAACGAAAAAGACA 58.613 37.500 0.00 0.00 40.17 3.41
2413 2545 5.909926 GTTGACTTCACAACGAAAAAGAC 57.090 39.130 0.00 0.00 40.17 3.01
2422 2554 7.538303 AAAAATCCAATGTTGACTTCACAAC 57.462 32.000 0.00 0.00 46.83 3.32
2447 2579 9.710979 GCGCACTAGTATATAAATTTTCACAAA 57.289 29.630 0.30 0.00 0.00 2.83
2448 2580 8.884726 TGCGCACTAGTATATAAATTTTCACAA 58.115 29.630 5.66 0.00 0.00 3.33
2449 2581 8.426881 TGCGCACTAGTATATAAATTTTCACA 57.573 30.769 5.66 0.00 0.00 3.58
2450 2582 9.370126 CTTGCGCACTAGTATATAAATTTTCAC 57.630 33.333 11.12 0.00 0.00 3.18
2451 2583 9.104965 ACTTGCGCACTAGTATATAAATTTTCA 57.895 29.630 11.12 0.00 29.61 2.69
2455 2587 9.760077 ACTTACTTGCGCACTAGTATATAAATT 57.240 29.630 19.70 1.85 34.71 1.82
2456 2588 9.408069 GACTTACTTGCGCACTAGTATATAAAT 57.592 33.333 19.70 0.27 34.71 1.40
2457 2589 8.407832 TGACTTACTTGCGCACTAGTATATAAA 58.592 33.333 19.70 8.11 34.71 1.40
2458 2590 7.933396 TGACTTACTTGCGCACTAGTATATAA 58.067 34.615 19.70 8.42 34.71 0.98
2459 2591 7.500720 TGACTTACTTGCGCACTAGTATATA 57.499 36.000 19.70 7.22 34.71 0.86
2460 2592 6.387041 TGACTTACTTGCGCACTAGTATAT 57.613 37.500 19.70 12.35 34.71 0.86
2461 2593 5.823209 TGACTTACTTGCGCACTAGTATA 57.177 39.130 19.70 11.39 34.71 1.47
2462 2594 4.713824 TGACTTACTTGCGCACTAGTAT 57.286 40.909 19.70 8.54 34.71 2.12
2463 2595 4.022589 ACTTGACTTACTTGCGCACTAGTA 60.023 41.667 11.12 14.33 33.72 1.82
2464 2596 3.243771 ACTTGACTTACTTGCGCACTAGT 60.244 43.478 18.09 18.09 35.90 2.57
2465 2597 3.318017 ACTTGACTTACTTGCGCACTAG 58.682 45.455 11.12 8.97 0.00 2.57
2466 2598 3.380479 ACTTGACTTACTTGCGCACTA 57.620 42.857 11.12 0.00 0.00 2.74
2467 2599 2.240493 ACTTGACTTACTTGCGCACT 57.760 45.000 11.12 0.00 0.00 4.40
2468 2600 3.334272 AAACTTGACTTACTTGCGCAC 57.666 42.857 11.12 0.00 0.00 5.34
2469 2601 5.468746 AGATTAAACTTGACTTACTTGCGCA 59.531 36.000 5.66 5.66 0.00 6.09
2470 2602 5.928153 AGATTAAACTTGACTTACTTGCGC 58.072 37.500 0.00 0.00 0.00 6.09
2471 2603 9.872757 TTTTAGATTAAACTTGACTTACTTGCG 57.127 29.630 0.00 0.00 0.00 4.85
2546 2678 8.134202 TCCCGCATTATATACATCCTATATGG 57.866 38.462 0.00 0.00 37.10 2.74
2547 2679 7.761704 GCTCCCGCATTATATACATCCTATATG 59.238 40.741 0.00 0.00 35.78 1.78
2548 2680 7.093289 GGCTCCCGCATTATATACATCCTATAT 60.093 40.741 0.00 0.00 38.10 0.86
2549 2681 6.210784 GGCTCCCGCATTATATACATCCTATA 59.789 42.308 0.00 0.00 38.10 1.31
2550 2682 5.012148 GGCTCCCGCATTATATACATCCTAT 59.988 44.000 0.00 0.00 38.10 2.57
2551 2683 4.344102 GGCTCCCGCATTATATACATCCTA 59.656 45.833 0.00 0.00 38.10 2.94
2552 2684 3.134804 GGCTCCCGCATTATATACATCCT 59.865 47.826 0.00 0.00 38.10 3.24
2553 2685 3.467803 GGCTCCCGCATTATATACATCC 58.532 50.000 0.00 0.00 38.10 3.51
2554 2686 3.123804 CGGCTCCCGCATTATATACATC 58.876 50.000 0.00 0.00 41.17 3.06
2555 2687 3.179443 CGGCTCCCGCATTATATACAT 57.821 47.619 0.00 0.00 41.17 2.29
2556 2688 2.665649 CGGCTCCCGCATTATATACA 57.334 50.000 0.00 0.00 41.17 2.29
2568 2700 1.676746 GAAAATACCCTTCGGCTCCC 58.323 55.000 0.00 0.00 0.00 4.30
2569 2701 1.212195 AGGAAAATACCCTTCGGCTCC 59.788 52.381 0.00 0.00 0.00 4.70
2570 2702 2.711978 AGGAAAATACCCTTCGGCTC 57.288 50.000 0.00 0.00 0.00 4.70
2571 2703 3.113043 AGTAGGAAAATACCCTTCGGCT 58.887 45.455 0.00 0.00 35.30 5.52
2572 2704 3.555527 AGTAGGAAAATACCCTTCGGC 57.444 47.619 0.00 0.00 35.30 5.54
2573 2705 5.116882 CAGAAGTAGGAAAATACCCTTCGG 58.883 45.833 0.00 0.00 35.18 4.30
2574 2706 5.731591 ACAGAAGTAGGAAAATACCCTTCG 58.268 41.667 0.00 0.00 35.18 3.79
2575 2707 7.849160 AGTACAGAAGTAGGAAAATACCCTTC 58.151 38.462 0.00 0.00 35.30 3.46
2576 2708 7.809880 AGTACAGAAGTAGGAAAATACCCTT 57.190 36.000 0.00 0.00 35.30 3.95
2577 2709 7.679025 AGAAGTACAGAAGTAGGAAAATACCCT 59.321 37.037 0.00 0.00 37.80 4.34
2578 2710 7.849160 AGAAGTACAGAAGTAGGAAAATACCC 58.151 38.462 0.00 0.00 0.00 3.69
2829 3025 2.030371 TCCGTGTGTGTACCTGTAACA 58.970 47.619 0.00 0.00 0.00 2.41
2934 4448 4.081309 TGTTAGTTTAGATTCCCGTGGAGG 60.081 45.833 0.00 0.00 40.63 4.30
3004 4520 4.211164 CAGAAGCACGTGAATAGTGACAAA 59.789 41.667 22.23 0.00 41.83 2.83
3073 4589 0.861837 CGTTGTGCTCGAAGAAGCTT 59.138 50.000 0.00 0.00 34.09 3.74
3119 4637 2.345991 GGCGCCACTGTAGGAACA 59.654 61.111 24.80 0.00 0.00 3.18
3186 4713 1.401018 CGAAATTGTTGGTCGCCTTCC 60.401 52.381 0.00 0.00 0.00 3.46
3559 5094 2.685743 TGAAGGATCGGGGGCGAA 60.686 61.111 0.00 0.00 0.00 4.70
3595 5132 0.245266 TGCCGTCGAGCAAGATGTTA 59.755 50.000 6.01 0.00 40.56 2.41
4021 5563 0.253044 GCTGGTACCTCCTCAATGCA 59.747 55.000 14.36 0.00 37.07 3.96
4024 5566 2.237392 GTTCTGCTGGTACCTCCTCAAT 59.763 50.000 14.36 0.00 37.07 2.57
4071 5613 1.301293 CTTTGCCCCTCCTCCAGAC 59.699 63.158 0.00 0.00 0.00 3.51
4184 5739 8.820933 CACGAACAACAATAGATGAATCTACAT 58.179 33.333 2.15 0.00 41.77 2.29
4316 5871 2.777692 ACCATATCCCCAGGTAACACTG 59.222 50.000 0.00 0.00 41.41 3.66
4400 5955 4.295870 TGTATCAAGACACTCGTCAACAC 58.704 43.478 0.00 0.00 45.23 3.32
4423 5978 7.566760 TGATATTGCGGTCTCAACATATTTT 57.433 32.000 0.00 0.00 0.00 1.82
4439 5994 6.016276 ACAAATAAAGTCCCCGATGATATTGC 60.016 38.462 0.00 0.00 0.00 3.56
4469 6024 7.205992 TCTCTGGATCATATTTCGTTTCAGAG 58.794 38.462 0.00 0.00 43.91 3.35
4617 6172 6.366315 TGTGTACAAAATGTGTAAGTGTCC 57.634 37.500 0.00 0.00 44.38 4.02
4622 6177 6.371809 ACACCTGTGTACAAAATGTGTAAG 57.628 37.500 15.84 0.00 44.38 2.34
4628 6183 5.759506 TGGTAACACCTGTGTACAAAATG 57.240 39.130 2.92 0.00 46.17 2.32
4695 6250 8.990163 TTCCATCTATAGAAAAACAATACCCC 57.010 34.615 6.52 0.00 0.00 4.95
4718 6273 9.166126 CGTTGTTGTTTTCTTATACCTCTTTTC 57.834 33.333 0.00 0.00 0.00 2.29
4740 6295 5.794687 TTATGGAAGTACATCTTGCGTTG 57.205 39.130 0.00 0.00 45.47 4.10
4766 6321 1.251251 CACTTTCAAGAAGGCCCTGG 58.749 55.000 0.00 0.00 0.00 4.45
4774 6329 7.119699 CACATGGATACTAAGCACTTTCAAGAA 59.880 37.037 0.00 0.00 37.61 2.52
4784 6339 6.264292 ACAAAAACACACATGGATACTAAGCA 59.736 34.615 0.00 0.00 37.61 3.91
4911 6466 7.271223 GCAACATATCTTTACACACACATTGAC 59.729 37.037 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.