Multiple sequence alignment - TraesCS6D01G362000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G362000 chr6D 100.000 4875 0 0 1 4875 452740759 452735885 0.000000e+00 9003
1 TraesCS6D01G362000 chr6A 90.213 4179 244 66 798 4875 598638473 598634359 0.000000e+00 5299
2 TraesCS6D01G362000 chr6B 93.062 2825 123 31 1459 4251 687556863 687554080 0.000000e+00 4063
3 TraesCS6D01G362000 chr6B 92.297 727 20 17 768 1465 687557606 687556887 0.000000e+00 1000
4 TraesCS6D01G362000 chr6B 87.086 573 32 22 4329 4875 687554049 687553493 1.160000e-170 610
5 TraesCS6D01G362000 chr6B 89.628 376 32 5 344 717 687558418 687558048 5.710000e-129 472
6 TraesCS6D01G362000 chr1D 97.050 339 6 2 1 338 275629293 275629628 7.080000e-158 568
7 TraesCS6D01G362000 chr5D 95.894 341 10 2 1 340 435489875 435490212 2.560000e-152 549
8 TraesCS6D01G362000 chr5B 95.846 337 12 2 4 338 636399370 636399034 1.190000e-150 544
9 TraesCS6D01G362000 chr7D 94.985 339 12 3 1 338 11652056 11652390 1.200000e-145 527
10 TraesCS6D01G362000 chr7D 93.931 346 16 4 3 347 622973343 622973002 7.230000e-143 518
11 TraesCS6D01G362000 chr7A 95.181 332 13 2 7 338 708118106 708117778 5.590000e-144 521
12 TraesCS6D01G362000 chr1B 94.690 339 12 4 1 338 262614834 262615167 5.590000e-144 521
13 TraesCS6D01G362000 chr1B 94.135 341 16 3 1 341 231666699 231667035 2.600000e-142 516
14 TraesCS6D01G362000 chr2B 94.627 335 15 2 4 338 30518790 30518459 2.600000e-142 516


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G362000 chr6D 452735885 452740759 4874 True 9003.00 9003 100.00000 1 4875 1 chr6D.!!$R1 4874
1 TraesCS6D01G362000 chr6A 598634359 598638473 4114 True 5299.00 5299 90.21300 798 4875 1 chr6A.!!$R1 4077
2 TraesCS6D01G362000 chr6B 687553493 687558418 4925 True 1536.25 4063 90.51825 344 4875 4 chr6B.!!$R1 4531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.038159 GTCGTCTAACAGCAGCAGGT 60.038 55.0 0.00 0.00 0.00 4.00 F
207 208 0.038526 GACACGTCGTTGATCCTGGT 60.039 55.0 0.00 0.00 0.00 4.00 F
302 303 0.040692 GAGGGTTTGTTTCGCCGAAC 60.041 55.0 0.00 0.00 0.00 3.95 F
305 306 0.040692 GGTTTGTTTCGCCGAACCTC 60.041 55.0 0.00 0.00 38.74 3.85 F
310 311 0.109597 GTTTCGCCGAACCTCTACGA 60.110 55.0 0.00 0.00 0.00 3.43 F
1537 2031 0.394762 TGTTCTCCCTGATGGCATGC 60.395 55.0 9.90 9.90 0.00 4.06 F
1539 2033 0.554305 TTCTCCCTGATGGCATGCAT 59.446 50.0 21.36 11.12 0.00 3.96 F
2869 3387 0.820871 TGTCTTTGGTTTGTGGTGCC 59.179 50.0 0.00 0.00 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1615 2131 1.134965 CACCACTACAGCTAGCTGACC 60.135 57.143 43.42 3.77 46.30 4.02 R
1694 2210 1.532437 CTGACTTGAGCGCAACATGAA 59.468 47.619 11.47 5.56 0.00 2.57 R
2252 2769 1.005394 CTAACGTGGCCTGTCGGTT 60.005 57.895 3.32 3.56 0.00 4.44 R
2501 3019 9.877178 AGGTAAAACTCACTTGATTATAGACAG 57.123 33.333 0.00 0.00 0.00 3.51 R
2509 3027 7.506114 TCTACACAGGTAAAACTCACTTGATT 58.494 34.615 0.00 0.00 0.00 2.57 R
2869 3387 1.463674 GTCTATGGTTGTTGGGGCTG 58.536 55.000 0.00 0.00 0.00 4.85 R
3503 4021 2.328099 CCAGTGGCGTCTTGGCTTC 61.328 63.158 0.00 0.00 45.14 3.86 R
4053 4572 0.036388 GGGACATGACAGCGAAAGGA 60.036 55.000 0.00 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.527434 CCAGGTGGTTACTTCCGTC 57.473 57.895 0.00 0.00 0.00 4.79
19 20 0.389426 CCAGGTGGTTACTTCCGTCG 60.389 60.000 0.00 0.00 0.00 5.12
20 21 0.316204 CAGGTGGTTACTTCCGTCGT 59.684 55.000 0.00 0.00 0.00 4.34
21 22 0.600057 AGGTGGTTACTTCCGTCGTC 59.400 55.000 0.00 0.00 0.00 4.20
22 23 0.600057 GGTGGTTACTTCCGTCGTCT 59.400 55.000 0.00 0.00 0.00 4.18
23 24 1.812571 GGTGGTTACTTCCGTCGTCTA 59.187 52.381 0.00 0.00 0.00 2.59
24 25 2.228822 GGTGGTTACTTCCGTCGTCTAA 59.771 50.000 0.00 0.00 0.00 2.10
25 26 3.237628 GTGGTTACTTCCGTCGTCTAAC 58.762 50.000 0.00 0.00 0.00 2.34
26 27 2.884012 TGGTTACTTCCGTCGTCTAACA 59.116 45.455 0.00 0.00 0.00 2.41
27 28 3.058016 TGGTTACTTCCGTCGTCTAACAG 60.058 47.826 0.00 0.00 0.00 3.16
28 29 2.907910 TACTTCCGTCGTCTAACAGC 57.092 50.000 0.00 0.00 0.00 4.40
29 30 0.956633 ACTTCCGTCGTCTAACAGCA 59.043 50.000 0.00 0.00 0.00 4.41
30 31 1.068472 ACTTCCGTCGTCTAACAGCAG 60.068 52.381 0.00 0.00 0.00 4.24
31 32 0.388134 TTCCGTCGTCTAACAGCAGC 60.388 55.000 0.00 0.00 0.00 5.25
32 33 1.080772 CCGTCGTCTAACAGCAGCA 60.081 57.895 0.00 0.00 0.00 4.41
33 34 1.073216 CCGTCGTCTAACAGCAGCAG 61.073 60.000 0.00 0.00 0.00 4.24
34 35 1.073216 CGTCGTCTAACAGCAGCAGG 61.073 60.000 0.00 0.00 0.00 4.85
35 36 0.038159 GTCGTCTAACAGCAGCAGGT 60.038 55.000 0.00 0.00 0.00 4.00
36 37 0.243907 TCGTCTAACAGCAGCAGGTC 59.756 55.000 0.00 0.00 0.00 3.85
37 38 1.073216 CGTCTAACAGCAGCAGGTCG 61.073 60.000 0.00 0.00 0.00 4.79
38 39 1.079819 TCTAACAGCAGCAGGTCGC 60.080 57.895 0.00 0.00 42.91 5.19
47 48 2.202756 GCAGGTCGCGGGTTCTAG 60.203 66.667 6.13 0.00 0.00 2.43
48 49 3.003113 GCAGGTCGCGGGTTCTAGT 62.003 63.158 6.13 0.00 0.00 2.57
49 50 1.139095 CAGGTCGCGGGTTCTAGTC 59.861 63.158 6.13 0.00 0.00 2.59
50 51 1.303888 AGGTCGCGGGTTCTAGTCA 60.304 57.895 6.13 0.00 0.00 3.41
51 52 1.153881 GGTCGCGGGTTCTAGTCAC 60.154 63.158 6.13 0.00 0.00 3.67
52 53 1.153881 GTCGCGGGTTCTAGTCACC 60.154 63.158 6.13 5.54 0.00 4.02
59 60 2.935481 GGTTCTAGTCACCCTACGTG 57.065 55.000 0.00 0.00 44.50 4.49
60 61 1.135170 GGTTCTAGTCACCCTACGTGC 60.135 57.143 0.00 0.00 42.69 5.34
61 62 1.817447 GTTCTAGTCACCCTACGTGCT 59.183 52.381 0.00 0.00 42.69 4.40
62 63 1.747709 TCTAGTCACCCTACGTGCTC 58.252 55.000 0.00 0.00 42.69 4.26
63 64 1.281287 TCTAGTCACCCTACGTGCTCT 59.719 52.381 0.00 0.00 42.69 4.09
64 65 2.093106 CTAGTCACCCTACGTGCTCTT 58.907 52.381 0.00 0.00 42.69 2.85
65 66 1.339097 AGTCACCCTACGTGCTCTTT 58.661 50.000 0.00 0.00 42.69 2.52
66 67 1.692519 AGTCACCCTACGTGCTCTTTT 59.307 47.619 0.00 0.00 42.69 2.27
67 68 2.104281 AGTCACCCTACGTGCTCTTTTT 59.896 45.455 0.00 0.00 42.69 1.94
114 115 2.994849 ACTGCGCGTTTTAAAAGAAGG 58.005 42.857 8.43 0.00 0.00 3.46
115 116 2.614983 ACTGCGCGTTTTAAAAGAAGGA 59.385 40.909 8.43 0.00 0.00 3.36
116 117 3.065648 ACTGCGCGTTTTAAAAGAAGGAA 59.934 39.130 8.43 0.00 0.00 3.36
117 118 4.030134 TGCGCGTTTTAAAAGAAGGAAA 57.970 36.364 8.43 0.00 0.00 3.13
118 119 4.421948 TGCGCGTTTTAAAAGAAGGAAAA 58.578 34.783 8.43 0.00 0.00 2.29
119 120 4.863131 TGCGCGTTTTAAAAGAAGGAAAAA 59.137 33.333 8.43 0.00 0.00 1.94
120 121 5.004916 TGCGCGTTTTAAAAGAAGGAAAAAG 59.995 36.000 8.43 0.00 0.00 2.27
121 122 5.230516 GCGCGTTTTAAAAGAAGGAAAAAGA 59.769 36.000 8.43 0.00 0.00 2.52
122 123 6.237622 GCGCGTTTTAAAAGAAGGAAAAAGAA 60.238 34.615 8.43 0.00 0.00 2.52
123 124 7.668190 CGCGTTTTAAAAGAAGGAAAAAGAAA 58.332 30.769 0.00 0.00 0.00 2.52
124 125 8.163516 CGCGTTTTAAAAGAAGGAAAAAGAAAA 58.836 29.630 0.00 0.00 0.00 2.29
125 126 9.257865 GCGTTTTAAAAGAAGGAAAAAGAAAAC 57.742 29.630 0.00 0.00 33.20 2.43
132 133 7.987268 AAGAAGGAAAAAGAAAACTAAAGCG 57.013 32.000 0.00 0.00 0.00 4.68
133 134 6.504398 AGAAGGAAAAAGAAAACTAAAGCGG 58.496 36.000 0.00 0.00 0.00 5.52
134 135 5.196341 AGGAAAAAGAAAACTAAAGCGGG 57.804 39.130 0.00 0.00 0.00 6.13
135 136 3.739300 GGAAAAAGAAAACTAAAGCGGGC 59.261 43.478 0.00 0.00 0.00 6.13
136 137 3.380479 AAAAGAAAACTAAAGCGGGCC 57.620 42.857 0.00 0.00 0.00 5.80
137 138 0.879090 AAGAAAACTAAAGCGGGCCG 59.121 50.000 24.35 24.35 0.00 6.13
138 139 0.958876 AGAAAACTAAAGCGGGCCGG 60.959 55.000 29.48 13.14 0.00 6.13
139 140 2.537792 GAAAACTAAAGCGGGCCGGC 62.538 60.000 29.48 26.78 0.00 6.13
157 158 3.277133 CCAATGGGGAACAGTGCG 58.723 61.111 0.00 0.00 43.50 5.34
158 159 2.342650 CCAATGGGGAACAGTGCGG 61.343 63.158 0.00 0.00 43.50 5.69
159 160 2.676471 AATGGGGAACAGTGCGGC 60.676 61.111 0.00 0.00 0.00 6.53
163 164 2.975799 GGGAACAGTGCGGCGAAA 60.976 61.111 12.98 0.00 0.00 3.46
164 165 2.332654 GGGAACAGTGCGGCGAAAT 61.333 57.895 12.98 0.00 0.00 2.17
165 166 1.154225 GGAACAGTGCGGCGAAATG 60.154 57.895 14.67 14.67 0.00 2.32
166 167 1.154225 GAACAGTGCGGCGAAATGG 60.154 57.895 20.50 1.70 0.00 3.16
167 168 3.267597 AACAGTGCGGCGAAATGGC 62.268 57.895 20.50 0.00 40.44 4.40
168 169 3.736100 CAGTGCGGCGAAATGGCA 61.736 61.111 12.98 0.00 45.16 4.92
172 173 4.049640 GCGGCGAAATGGCACCAA 62.050 61.111 12.98 0.00 45.16 3.67
173 174 2.884367 CGGCGAAATGGCACCAAT 59.116 55.556 0.00 0.00 45.16 3.16
174 175 1.226660 CGGCGAAATGGCACCAATC 60.227 57.895 0.00 0.00 45.16 2.67
175 176 1.141665 GGCGAAATGGCACCAATCC 59.858 57.895 0.00 0.00 44.08 3.01
176 177 1.141665 GCGAAATGGCACCAATCCC 59.858 57.895 0.00 0.00 0.00 3.85
177 178 1.433064 CGAAATGGCACCAATCCCG 59.567 57.895 0.00 0.00 0.00 5.14
178 179 1.815866 GAAATGGCACCAATCCCGG 59.184 57.895 0.00 0.00 0.00 5.73
179 180 2.296814 GAAATGGCACCAATCCCGGC 62.297 60.000 0.00 0.00 0.00 6.13
180 181 4.839706 ATGGCACCAATCCCGGCC 62.840 66.667 0.00 0.00 46.58 6.13
182 183 4.839706 GGCACCAATCCCGGCCAT 62.840 66.667 2.24 0.00 45.70 4.40
183 184 3.219198 GCACCAATCCCGGCCATC 61.219 66.667 2.24 0.00 0.00 3.51
184 185 2.519302 CACCAATCCCGGCCATCC 60.519 66.667 2.24 0.00 0.00 3.51
185 186 2.696125 ACCAATCCCGGCCATCCT 60.696 61.111 2.24 0.00 0.00 3.24
186 187 2.203394 CCAATCCCGGCCATCCTG 60.203 66.667 2.24 0.00 0.00 3.86
187 188 2.597340 CAATCCCGGCCATCCTGT 59.403 61.111 2.24 0.00 0.00 4.00
188 189 1.825191 CAATCCCGGCCATCCTGTG 60.825 63.158 2.24 0.00 0.00 3.66
189 190 2.000701 AATCCCGGCCATCCTGTGA 61.001 57.895 2.24 0.00 0.00 3.58
190 191 2.270874 AATCCCGGCCATCCTGTGAC 62.271 60.000 2.24 0.00 0.00 3.67
191 192 3.716195 CCCGGCCATCCTGTGACA 61.716 66.667 2.24 0.00 0.00 3.58
192 193 2.436646 CCGGCCATCCTGTGACAC 60.437 66.667 2.24 0.00 0.00 3.67
193 194 2.815211 CGGCCATCCTGTGACACG 60.815 66.667 2.24 0.00 0.00 4.49
194 195 2.347490 GGCCATCCTGTGACACGT 59.653 61.111 0.00 0.00 0.00 4.49
195 196 1.741770 GGCCATCCTGTGACACGTC 60.742 63.158 0.00 0.00 0.00 4.34
196 197 2.094659 GCCATCCTGTGACACGTCG 61.095 63.158 0.22 0.00 0.00 5.12
197 198 1.289066 CCATCCTGTGACACGTCGT 59.711 57.895 0.22 0.00 0.00 4.34
198 199 0.319555 CCATCCTGTGACACGTCGTT 60.320 55.000 0.00 0.00 0.00 3.85
199 200 0.784178 CATCCTGTGACACGTCGTTG 59.216 55.000 0.00 0.00 0.00 4.10
200 201 0.671796 ATCCTGTGACACGTCGTTGA 59.328 50.000 0.00 0.00 0.00 3.18
201 202 0.671796 TCCTGTGACACGTCGTTGAT 59.328 50.000 0.00 0.00 0.00 2.57
202 203 1.060713 CCTGTGACACGTCGTTGATC 58.939 55.000 0.00 0.00 0.00 2.92
203 204 1.060713 CTGTGACACGTCGTTGATCC 58.939 55.000 0.00 0.00 0.00 3.36
204 205 0.671796 TGTGACACGTCGTTGATCCT 59.328 50.000 0.00 0.00 0.00 3.24
205 206 1.060713 GTGACACGTCGTTGATCCTG 58.939 55.000 0.00 0.00 0.00 3.86
206 207 0.038618 TGACACGTCGTTGATCCTGG 60.039 55.000 0.00 0.00 0.00 4.45
207 208 0.038526 GACACGTCGTTGATCCTGGT 60.039 55.000 0.00 0.00 0.00 4.00
208 209 0.391597 ACACGTCGTTGATCCTGGTT 59.608 50.000 0.00 0.00 0.00 3.67
209 210 1.202604 ACACGTCGTTGATCCTGGTTT 60.203 47.619 0.00 0.00 0.00 3.27
210 211 1.194547 CACGTCGTTGATCCTGGTTTG 59.805 52.381 0.00 0.00 0.00 2.93
211 212 0.165944 CGTCGTTGATCCTGGTTTGC 59.834 55.000 0.00 0.00 0.00 3.68
212 213 0.521735 GTCGTTGATCCTGGTTTGCC 59.478 55.000 0.00 0.00 0.00 4.52
213 214 0.109532 TCGTTGATCCTGGTTTGCCA 59.890 50.000 0.00 0.00 43.73 4.92
214 215 0.958091 CGTTGATCCTGGTTTGCCAA 59.042 50.000 0.00 0.00 45.51 4.52
215 216 1.339610 CGTTGATCCTGGTTTGCCAAA 59.660 47.619 0.00 0.00 45.51 3.28
216 217 2.754472 GTTGATCCTGGTTTGCCAAAC 58.246 47.619 11.88 11.88 45.51 2.93
217 218 0.958091 TGATCCTGGTTTGCCAAACG 59.042 50.000 13.75 1.59 45.51 3.60
218 219 1.243902 GATCCTGGTTTGCCAAACGA 58.756 50.000 13.75 9.39 45.51 3.85
219 220 0.958822 ATCCTGGTTTGCCAAACGAC 59.041 50.000 13.75 2.26 45.51 4.34
220 221 0.106918 TCCTGGTTTGCCAAACGACT 60.107 50.000 13.75 0.00 45.51 4.18
221 222 0.310854 CCTGGTTTGCCAAACGACTC 59.689 55.000 13.75 1.22 45.51 3.36
222 223 0.310854 CTGGTTTGCCAAACGACTCC 59.689 55.000 13.75 0.77 45.51 3.85
223 224 0.394488 TGGTTTGCCAAACGACTCCA 60.394 50.000 13.75 3.46 42.83 3.86
224 225 0.310854 GGTTTGCCAAACGACTCCAG 59.689 55.000 13.75 0.00 42.29 3.86
225 226 0.310854 GTTTGCCAAACGACTCCAGG 59.689 55.000 4.29 0.00 0.00 4.45
226 227 0.821711 TTTGCCAAACGACTCCAGGG 60.822 55.000 0.00 0.00 0.00 4.45
227 228 1.990160 TTGCCAAACGACTCCAGGGT 61.990 55.000 0.00 0.00 0.00 4.34
228 229 1.228154 GCCAAACGACTCCAGGGTT 60.228 57.895 0.00 0.00 0.00 4.11
229 230 1.235281 GCCAAACGACTCCAGGGTTC 61.235 60.000 0.00 0.00 0.00 3.62
230 231 0.107831 CCAAACGACTCCAGGGTTCA 59.892 55.000 0.00 0.00 0.00 3.18
231 232 1.512926 CAAACGACTCCAGGGTTCAG 58.487 55.000 0.00 0.00 0.00 3.02
232 233 1.129058 AAACGACTCCAGGGTTCAGT 58.871 50.000 0.00 0.00 0.00 3.41
233 234 1.129058 AACGACTCCAGGGTTCAGTT 58.871 50.000 0.00 0.00 0.00 3.16
234 235 1.129058 ACGACTCCAGGGTTCAGTTT 58.871 50.000 0.00 0.00 0.00 2.66
235 236 2.322658 ACGACTCCAGGGTTCAGTTTA 58.677 47.619 0.00 0.00 0.00 2.01
236 237 2.299297 ACGACTCCAGGGTTCAGTTTAG 59.701 50.000 0.00 0.00 0.00 1.85
237 238 2.561419 CGACTCCAGGGTTCAGTTTAGA 59.439 50.000 0.00 0.00 0.00 2.10
238 239 3.614390 CGACTCCAGGGTTCAGTTTAGAC 60.614 52.174 0.00 0.00 0.00 2.59
239 240 2.638363 ACTCCAGGGTTCAGTTTAGACC 59.362 50.000 0.00 0.00 0.00 3.85
240 241 1.621814 TCCAGGGTTCAGTTTAGACCG 59.378 52.381 0.00 0.00 0.00 4.79
241 242 1.338769 CCAGGGTTCAGTTTAGACCGG 60.339 57.143 0.00 0.00 0.00 5.28
242 243 0.981943 AGGGTTCAGTTTAGACCGGG 59.018 55.000 6.32 0.00 0.00 5.73
243 244 0.978907 GGGTTCAGTTTAGACCGGGA 59.021 55.000 6.32 0.00 0.00 5.14
244 245 1.558294 GGGTTCAGTTTAGACCGGGAT 59.442 52.381 6.32 0.00 0.00 3.85
245 246 2.026542 GGGTTCAGTTTAGACCGGGATT 60.027 50.000 6.32 0.00 0.00 3.01
246 247 3.007635 GGTTCAGTTTAGACCGGGATTG 58.992 50.000 6.32 0.00 0.00 2.67
247 248 2.396590 TCAGTTTAGACCGGGATTGC 57.603 50.000 6.32 0.00 0.00 3.56
248 249 1.626321 TCAGTTTAGACCGGGATTGCA 59.374 47.619 6.32 0.00 0.00 4.08
249 250 2.238646 TCAGTTTAGACCGGGATTGCAT 59.761 45.455 6.32 0.00 0.00 3.96
250 251 3.452990 TCAGTTTAGACCGGGATTGCATA 59.547 43.478 6.32 0.00 0.00 3.14
251 252 3.809832 CAGTTTAGACCGGGATTGCATAG 59.190 47.826 6.32 0.00 0.00 2.23
252 253 3.454812 AGTTTAGACCGGGATTGCATAGT 59.545 43.478 6.32 0.00 0.00 2.12
253 254 4.080526 AGTTTAGACCGGGATTGCATAGTT 60.081 41.667 6.32 0.00 0.00 2.24
254 255 2.622064 AGACCGGGATTGCATAGTTC 57.378 50.000 6.32 0.00 0.00 3.01
255 256 1.837439 AGACCGGGATTGCATAGTTCA 59.163 47.619 6.32 0.00 0.00 3.18
256 257 2.158900 AGACCGGGATTGCATAGTTCAG 60.159 50.000 6.32 0.00 0.00 3.02
257 258 0.947244 CCGGGATTGCATAGTTCAGC 59.053 55.000 0.00 0.00 0.00 4.26
258 259 0.583438 CGGGATTGCATAGTTCAGCG 59.417 55.000 0.00 0.00 0.00 5.18
259 260 1.668419 GGGATTGCATAGTTCAGCGT 58.332 50.000 0.00 0.00 0.00 5.07
260 261 1.331756 GGGATTGCATAGTTCAGCGTG 59.668 52.381 0.00 0.00 0.00 5.34
261 262 1.268234 GGATTGCATAGTTCAGCGTGC 60.268 52.381 0.00 0.00 38.05 5.34
262 263 1.398041 GATTGCATAGTTCAGCGTGCA 59.602 47.619 0.00 0.00 44.97 4.57
263 264 2.925594 TGCATAGTTCAGCGTGCAA 58.074 47.368 0.00 0.00 43.83 4.08
264 265 1.452110 TGCATAGTTCAGCGTGCAAT 58.548 45.000 0.00 0.00 43.83 3.56
265 266 1.398041 TGCATAGTTCAGCGTGCAATC 59.602 47.619 0.00 0.00 43.83 2.67
266 267 1.593070 GCATAGTTCAGCGTGCAATCG 60.593 52.381 0.00 0.00 37.52 3.34
267 268 1.926510 CATAGTTCAGCGTGCAATCGA 59.073 47.619 0.24 0.00 0.00 3.59
268 269 1.346365 TAGTTCAGCGTGCAATCGAC 58.654 50.000 0.24 0.00 0.00 4.20
269 270 1.132640 GTTCAGCGTGCAATCGACC 59.867 57.895 0.24 0.00 0.00 4.79
270 271 2.379634 TTCAGCGTGCAATCGACCG 61.380 57.895 0.24 0.00 0.00 4.79
271 272 3.853330 CAGCGTGCAATCGACCGG 61.853 66.667 0.00 0.00 0.00 5.28
274 275 2.202878 CGTGCAATCGACCGGGAT 60.203 61.111 6.32 0.00 0.00 3.85
275 276 1.813753 CGTGCAATCGACCGGGATT 60.814 57.895 6.32 2.83 37.11 3.01
276 277 1.366111 CGTGCAATCGACCGGGATTT 61.366 55.000 6.32 0.00 34.50 2.17
277 278 0.377203 GTGCAATCGACCGGGATTTC 59.623 55.000 6.32 0.99 34.50 2.17
278 279 1.087202 TGCAATCGACCGGGATTTCG 61.087 55.000 6.32 6.06 34.50 3.46
280 281 0.928229 CAATCGACCGGGATTTCGAC 59.072 55.000 16.08 0.00 46.41 4.20
281 282 0.533491 AATCGACCGGGATTTCGACA 59.467 50.000 16.08 0.00 46.41 4.35
282 283 0.750850 ATCGACCGGGATTTCGACAT 59.249 50.000 16.08 0.20 46.41 3.06
283 284 0.179121 TCGACCGGGATTTCGACATG 60.179 55.000 10.52 0.00 39.29 3.21
284 285 0.179121 CGACCGGGATTTCGACATGA 60.179 55.000 6.32 0.00 37.43 3.07
285 286 1.571919 GACCGGGATTTCGACATGAG 58.428 55.000 6.32 0.00 0.00 2.90
286 287 0.178068 ACCGGGATTTCGACATGAGG 59.822 55.000 6.32 0.00 0.00 3.86
287 288 0.532862 CCGGGATTTCGACATGAGGG 60.533 60.000 0.00 0.00 0.00 4.30
288 289 0.178068 CGGGATTTCGACATGAGGGT 59.822 55.000 0.00 0.00 0.00 4.34
289 290 1.406887 CGGGATTTCGACATGAGGGTT 60.407 52.381 0.00 0.00 0.00 4.11
290 291 2.723273 GGGATTTCGACATGAGGGTTT 58.277 47.619 0.00 0.00 0.00 3.27
291 292 2.423538 GGGATTTCGACATGAGGGTTTG 59.576 50.000 0.00 0.00 0.00 2.93
292 293 3.081804 GGATTTCGACATGAGGGTTTGT 58.918 45.455 0.00 0.00 0.00 2.83
293 294 3.506067 GGATTTCGACATGAGGGTTTGTT 59.494 43.478 0.00 0.00 0.00 2.83
294 295 4.022329 GGATTTCGACATGAGGGTTTGTTT 60.022 41.667 0.00 0.00 0.00 2.83
295 296 4.561735 TTTCGACATGAGGGTTTGTTTC 57.438 40.909 0.00 0.00 0.00 2.78
296 297 2.139917 TCGACATGAGGGTTTGTTTCG 58.860 47.619 0.00 0.00 0.00 3.46
297 298 1.399727 CGACATGAGGGTTTGTTTCGC 60.400 52.381 0.00 0.00 0.00 4.70
298 299 0.958822 ACATGAGGGTTTGTTTCGCC 59.041 50.000 0.00 0.00 0.00 5.54
299 300 0.109781 CATGAGGGTTTGTTTCGCCG 60.110 55.000 0.00 0.00 0.00 6.46
300 301 0.250553 ATGAGGGTTTGTTTCGCCGA 60.251 50.000 0.00 0.00 0.00 5.54
301 302 0.464013 TGAGGGTTTGTTTCGCCGAA 60.464 50.000 0.00 0.00 0.00 4.30
302 303 0.040692 GAGGGTTTGTTTCGCCGAAC 60.041 55.000 0.00 0.00 0.00 3.95
303 304 1.008194 GGGTTTGTTTCGCCGAACC 60.008 57.895 0.00 0.00 40.58 3.62
304 305 1.449726 GGGTTTGTTTCGCCGAACCT 61.450 55.000 0.00 0.00 40.98 3.50
305 306 0.040692 GGTTTGTTTCGCCGAACCTC 60.041 55.000 0.00 0.00 38.74 3.85
306 307 0.942252 GTTTGTTTCGCCGAACCTCT 59.058 50.000 0.00 0.00 0.00 3.69
307 308 2.137523 GTTTGTTTCGCCGAACCTCTA 58.862 47.619 0.00 0.00 0.00 2.43
308 309 1.787012 TTGTTTCGCCGAACCTCTAC 58.213 50.000 0.00 0.00 0.00 2.59
309 310 0.387622 TGTTTCGCCGAACCTCTACG 60.388 55.000 0.00 0.00 0.00 3.51
310 311 0.109597 GTTTCGCCGAACCTCTACGA 60.110 55.000 0.00 0.00 0.00 3.43
311 312 0.597568 TTTCGCCGAACCTCTACGAA 59.402 50.000 0.00 0.00 40.61 3.85
312 313 0.813184 TTCGCCGAACCTCTACGAAT 59.187 50.000 0.00 0.00 37.78 3.34
313 314 0.813184 TCGCCGAACCTCTACGAATT 59.187 50.000 0.00 0.00 0.00 2.17
314 315 1.197910 CGCCGAACCTCTACGAATTC 58.802 55.000 0.00 0.00 0.00 2.17
315 316 1.468565 CGCCGAACCTCTACGAATTCA 60.469 52.381 6.22 0.00 0.00 2.57
316 317 2.194271 GCCGAACCTCTACGAATTCAG 58.806 52.381 6.22 1.11 0.00 3.02
317 318 2.810650 CCGAACCTCTACGAATTCAGG 58.189 52.381 6.22 7.11 0.00 3.86
318 319 2.481449 CCGAACCTCTACGAATTCAGGG 60.481 54.545 12.75 0.80 0.00 4.45
319 320 2.165845 CGAACCTCTACGAATTCAGGGT 59.834 50.000 12.75 7.09 0.00 4.34
320 321 3.368116 CGAACCTCTACGAATTCAGGGTT 60.368 47.826 12.75 13.28 38.14 4.11
321 322 4.576879 GAACCTCTACGAATTCAGGGTTT 58.423 43.478 12.75 0.00 35.99 3.27
322 323 5.622914 CGAACCTCTACGAATTCAGGGTTTA 60.623 44.000 12.75 0.00 35.99 2.01
323 324 5.750352 ACCTCTACGAATTCAGGGTTTAA 57.250 39.130 12.75 0.00 0.00 1.52
324 325 6.117975 ACCTCTACGAATTCAGGGTTTAAA 57.882 37.500 12.75 0.00 0.00 1.52
325 326 6.536447 ACCTCTACGAATTCAGGGTTTAAAA 58.464 36.000 12.75 0.00 0.00 1.52
326 327 7.173032 ACCTCTACGAATTCAGGGTTTAAAAT 58.827 34.615 12.75 0.00 0.00 1.82
327 328 7.120726 ACCTCTACGAATTCAGGGTTTAAAATG 59.879 37.037 12.75 0.00 0.00 2.32
328 329 7.385778 TCTACGAATTCAGGGTTTAAAATGG 57.614 36.000 6.22 0.00 0.00 3.16
329 330 7.169591 TCTACGAATTCAGGGTTTAAAATGGA 58.830 34.615 6.22 0.00 0.00 3.41
330 331 6.020971 ACGAATTCAGGGTTTAAAATGGAC 57.979 37.500 6.22 0.00 0.00 4.02
331 332 5.773176 ACGAATTCAGGGTTTAAAATGGACT 59.227 36.000 6.22 0.00 0.00 3.85
332 333 6.266786 ACGAATTCAGGGTTTAAAATGGACTT 59.733 34.615 6.22 0.00 0.00 3.01
333 334 7.151976 CGAATTCAGGGTTTAAAATGGACTTT 58.848 34.615 6.22 0.00 0.00 2.66
334 335 7.655732 CGAATTCAGGGTTTAAAATGGACTTTT 59.344 33.333 6.22 0.00 40.21 2.27
335 336 9.337396 GAATTCAGGGTTTAAAATGGACTTTTT 57.663 29.630 0.00 2.24 38.09 1.94
336 337 8.902540 ATTCAGGGTTTAAAATGGACTTTTTC 57.097 30.769 0.00 0.00 38.09 2.29
337 338 6.822442 TCAGGGTTTAAAATGGACTTTTTCC 58.178 36.000 0.00 0.00 46.13 3.13
338 339 5.995282 CAGGGTTTAAAATGGACTTTTTCCC 59.005 40.000 9.07 9.07 45.17 3.97
339 340 5.908831 AGGGTTTAAAATGGACTTTTTCCCT 59.091 36.000 11.93 11.93 45.17 4.20
340 341 6.042781 AGGGTTTAAAATGGACTTTTTCCCTC 59.957 38.462 11.93 0.40 45.17 4.30
341 342 6.042781 GGGTTTAAAATGGACTTTTTCCCTCT 59.957 38.462 9.53 0.00 45.17 3.69
342 343 7.233962 GGGTTTAAAATGGACTTTTTCCCTCTA 59.766 37.037 9.53 0.00 45.17 2.43
349 350 4.042809 TGGACTTTTTCCCTCTATTGCAGA 59.957 41.667 0.00 0.00 45.17 4.26
374 375 2.929398 GCAAAATCCCTAAAACGCATGG 59.071 45.455 0.00 0.00 0.00 3.66
375 376 2.929398 CAAAATCCCTAAAACGCATGGC 59.071 45.455 0.00 0.00 0.00 4.40
382 383 4.220821 TCCCTAAAACGCATGGCATTTTTA 59.779 37.500 12.54 12.54 35.59 1.52
429 430 8.945057 ACACATCATATGTTTTAATTTTTGGGC 58.055 29.630 1.90 0.00 42.70 5.36
446 447 3.519667 TGGGCATGAAAAATTTCTCCCT 58.480 40.909 20.90 1.55 39.89 4.20
447 448 3.909364 TGGGCATGAAAAATTTCTCCCTT 59.091 39.130 20.90 0.00 39.89 3.95
448 449 4.350520 TGGGCATGAAAAATTTCTCCCTTT 59.649 37.500 20.90 0.00 39.89 3.11
485 486 7.498900 ACAAATCTCTCTGTTACAACATGACAA 59.501 33.333 0.00 0.00 38.41 3.18
512 513 3.246699 TGAACGTTTCATCGGAGTGTTTC 59.753 43.478 0.46 0.00 34.08 2.78
513 514 3.107642 ACGTTTCATCGGAGTGTTTCT 57.892 42.857 0.00 0.00 34.94 2.52
520 521 7.360101 CGTTTCATCGGAGTGTTTCTTTTAGAT 60.360 37.037 0.00 0.00 0.00 1.98
526 527 6.647895 TCGGAGTGTTTCTTTTAGATAACACC 59.352 38.462 19.41 14.66 41.55 4.16
601 602 2.637872 CAGGGTCTTTCTGTAGGGAACA 59.362 50.000 0.00 0.00 36.42 3.18
621 622 3.589288 ACATCAGCCCCTTATTAGGATCC 59.411 47.826 2.48 2.48 45.05 3.36
625 626 5.676125 TCAGCCCCTTATTAGGATCCTATT 58.324 41.667 22.30 19.84 45.05 1.73
760 762 6.951256 AAAAACTGACTGAAAACTCTTTGC 57.049 33.333 0.00 0.00 0.00 3.68
761 763 3.951979 ACTGACTGAAAACTCTTTGCG 57.048 42.857 0.00 0.00 0.00 4.85
762 764 3.270877 ACTGACTGAAAACTCTTTGCGT 58.729 40.909 0.00 0.00 0.00 5.24
763 765 3.689649 ACTGACTGAAAACTCTTTGCGTT 59.310 39.130 0.00 0.00 0.00 4.84
766 1190 4.394920 TGACTGAAAACTCTTTGCGTTCTT 59.605 37.500 0.00 0.00 0.00 2.52
771 1195 1.230324 ACTCTTTGCGTTCTTGCTCC 58.770 50.000 0.00 0.00 35.36 4.70
799 1223 3.781770 CTCCGCGAGCTAGGCCTTG 62.782 68.421 12.58 11.17 0.00 3.61
818 1242 1.154131 CTCCACGAGCGAGTGACAG 60.154 63.158 14.69 7.40 44.43 3.51
869 1293 0.897863 CCGAAAATCCCCCACTTGCA 60.898 55.000 0.00 0.00 0.00 4.08
1147 1583 3.094572 TCTAGGGTTTCGAGATTTCCGT 58.905 45.455 0.00 0.00 0.00 4.69
1241 1688 1.079819 CTGACCCGTAGCAGTGGTG 60.080 63.158 4.76 0.00 30.97 4.17
1256 1703 4.341783 GTGGCCAGGAGCAGCACT 62.342 66.667 5.11 0.00 46.50 4.40
1374 1838 1.331447 GCAGAATCATACATGTGCGCA 59.669 47.619 5.66 5.66 0.00 6.09
1421 1885 8.762645 GGTGAATTGTGAGATGGATCCTATATA 58.237 37.037 14.23 0.00 0.00 0.86
1457 1921 1.011333 GCGGTGCTAATTCGGCTTAA 58.989 50.000 5.21 0.00 0.00 1.85
1465 1959 5.581085 GTGCTAATTCGGCTTAAAGAGAGAA 59.419 40.000 5.21 0.00 0.00 2.87
1501 1995 9.520515 ACAATACTCCTATCTTTTTGATGTTGT 57.479 29.630 0.00 0.00 36.65 3.32
1536 2030 2.359981 ATGTTCTCCCTGATGGCATG 57.640 50.000 3.81 0.00 0.00 4.06
1537 2031 0.394762 TGTTCTCCCTGATGGCATGC 60.395 55.000 9.90 9.90 0.00 4.06
1538 2032 0.394762 GTTCTCCCTGATGGCATGCA 60.395 55.000 21.36 6.13 0.00 3.96
1539 2033 0.554305 TTCTCCCTGATGGCATGCAT 59.446 50.000 21.36 11.12 0.00 3.96
1594 2110 5.452917 CGTTAGGTAGTAAGAGGGGATTTGG 60.453 48.000 0.00 0.00 0.00 3.28
1615 2131 7.828508 TTGGATCCATTTCTTATCCTCATTG 57.171 36.000 17.06 0.00 39.97 2.82
1616 2132 6.309357 TGGATCCATTTCTTATCCTCATTGG 58.691 40.000 11.44 0.00 39.97 3.16
1639 2155 3.830178 TCAGCTAGCTGTAGTGGTGTTTA 59.170 43.478 36.99 15.98 43.96 2.01
1703 2219 7.149973 AGATTTGTATATGCCATTCATGTTGC 58.850 34.615 0.00 0.00 36.63 4.17
1779 2295 6.038997 AGCCGATTACCTATTAAGTGGATC 57.961 41.667 3.84 0.00 0.00 3.36
1894 2410 2.841881 ACTGCCTAACTATTTTCGGGGA 59.158 45.455 0.00 0.00 0.00 4.81
2017 2534 3.680490 TGACTTGTTCAAACTGGACACA 58.320 40.909 0.00 0.00 0.00 3.72
2245 2762 8.138074 TCATGAAGTAGCTCTGTATGTATGTTC 58.862 37.037 0.00 0.00 0.00 3.18
2252 2769 5.532779 AGCTCTGTATGTATGTTCGAGATCA 59.467 40.000 0.00 0.00 0.00 2.92
2393 2911 3.056328 GGGGGCGAAAGTGACTGC 61.056 66.667 0.00 0.00 0.00 4.40
2501 3019 4.035208 CACCGGAAGTTACCTTTATGCATC 59.965 45.833 9.46 0.00 0.00 3.91
2509 3027 9.982651 GAAGTTACCTTTATGCATCTGTCTATA 57.017 33.333 0.19 0.00 0.00 1.31
2527 3045 9.877178 CTGTCTATAATCAAGTGAGTTTTACCT 57.123 33.333 0.00 0.00 0.00 3.08
2528 3046 9.653287 TGTCTATAATCAAGTGAGTTTTACCTG 57.347 33.333 0.00 0.00 0.00 4.00
2869 3387 0.820871 TGTCTTTGGTTTGTGGTGCC 59.179 50.000 0.00 0.00 0.00 5.01
2929 3447 1.344763 CGACAACAGAAGAGGGGTTCT 59.655 52.381 0.00 0.00 37.25 3.01
3503 4021 1.450848 ATGACCGATGCTGTGCTGG 60.451 57.895 0.00 0.00 0.00 4.85
3631 4149 4.693283 ACTTTGTTGTCTCAGACGATGAA 58.307 39.130 0.00 0.00 37.52 2.57
3643 4161 2.683362 AGACGATGAATCAGACGTGCTA 59.317 45.455 19.06 0.00 39.04 3.49
3661 4179 2.492484 GCTAGATACCGATGAACCCGAT 59.508 50.000 0.00 0.00 0.00 4.18
3664 4182 2.558795 AGATACCGATGAACCCGATGAG 59.441 50.000 0.00 0.00 0.00 2.90
3667 4185 1.407979 ACCGATGAACCCGATGAGTAC 59.592 52.381 0.00 0.00 0.00 2.73
3679 4197 3.458189 CGATGAGTACCTGGAACCATTC 58.542 50.000 0.00 0.00 0.00 2.67
3683 4201 4.283337 TGAGTACCTGGAACCATTCGATA 58.717 43.478 0.00 0.00 0.00 2.92
3694 4212 5.413833 GGAACCATTCGATAATGCTGATGAT 59.586 40.000 0.00 0.00 41.06 2.45
3879 4397 2.875485 CGACGTGTCCTGATCCGT 59.125 61.111 0.00 0.00 36.04 4.69
3952 4470 2.603247 GCCATGTGCACGAACGACA 61.603 57.895 13.13 0.00 40.77 4.35
4051 4570 1.086067 CATCGCCGATCTGTTGCTGT 61.086 55.000 0.00 0.00 0.00 4.40
4052 4571 0.807667 ATCGCCGATCTGTTGCTGTC 60.808 55.000 0.00 0.00 0.00 3.51
4053 4572 1.446792 CGCCGATCTGTTGCTGTCT 60.447 57.895 0.00 0.00 0.00 3.41
4059 4578 2.670414 CGATCTGTTGCTGTCTCCTTTC 59.330 50.000 0.00 0.00 0.00 2.62
4072 4591 0.036388 TCCTTTCGCTGTCATGTCCC 60.036 55.000 0.00 0.00 0.00 4.46
4086 4605 3.512329 TCATGTCCCAGCTTCGTTAGTTA 59.488 43.478 0.00 0.00 0.00 2.24
4094 4613 6.097270 TCCCAGCTTCGTTAGTTAATTAGCTA 59.903 38.462 5.04 5.04 0.00 3.32
4117 4636 7.701501 GCTAGACTCTGTTAGCGTTAAATAAGT 59.298 37.037 0.00 0.00 33.68 2.24
4161 4685 4.453136 GGCATTTGTTTCCGTGTTCTACTA 59.547 41.667 0.00 0.00 0.00 1.82
4170 4694 5.266733 TCCGTGTTCTACTACTGTTGTTT 57.733 39.130 0.00 0.00 0.00 2.83
4171 4695 5.663456 TCCGTGTTCTACTACTGTTGTTTT 58.337 37.500 0.00 0.00 0.00 2.43
4204 4728 3.723260 GATCTTGATTTCCCTCCTCGAC 58.277 50.000 0.00 0.00 0.00 4.20
4234 4758 1.323412 ACTCGTCAGTCAGTGAGCTT 58.677 50.000 0.00 0.00 35.13 3.74
4273 4797 2.890474 GGTGGCGCCGATACTGTG 60.890 66.667 23.90 0.00 0.00 3.66
4276 4800 2.962253 GGCGCCGATACTGTGCTC 60.962 66.667 12.58 0.00 39.17 4.26
4277 4801 2.962253 GCGCCGATACTGTGCTCC 60.962 66.667 0.00 0.00 36.34 4.70
4278 4802 2.494445 CGCCGATACTGTGCTCCA 59.506 61.111 0.00 0.00 0.00 3.86
4279 4803 1.878522 CGCCGATACTGTGCTCCAC 60.879 63.158 0.00 0.00 34.56 4.02
4280 4804 1.878522 GCCGATACTGTGCTCCACG 60.879 63.158 0.00 0.00 37.14 4.94
4281 4805 1.226974 CCGATACTGTGCTCCACGG 60.227 63.158 2.79 2.79 45.33 4.94
4282 4806 1.663379 CCGATACTGTGCTCCACGGA 61.663 60.000 10.87 0.00 42.79 4.69
4284 4808 1.600663 CGATACTGTGCTCCACGGATC 60.601 57.143 10.87 6.73 42.79 3.36
4286 4810 0.678684 TACTGTGCTCCACGGATCGA 60.679 55.000 10.87 0.00 42.79 3.59
4287 4811 1.517257 CTGTGCTCCACGGATCGAC 60.517 63.158 0.00 0.00 42.79 4.20
4288 4812 2.212900 CTGTGCTCCACGGATCGACA 62.213 60.000 0.00 0.00 42.79 4.35
4290 4814 1.141665 TGCTCCACGGATCGACATG 59.858 57.895 0.00 0.00 0.00 3.21
4291 4815 2.240500 GCTCCACGGATCGACATGC 61.241 63.158 0.00 0.00 0.00 4.06
4292 4816 1.141665 CTCCACGGATCGACATGCA 59.858 57.895 0.00 0.00 0.00 3.96
4293 4817 0.249615 CTCCACGGATCGACATGCAT 60.250 55.000 0.00 0.00 0.00 3.96
4294 4818 0.530431 TCCACGGATCGACATGCATG 60.530 55.000 25.09 25.09 0.00 4.06
4296 4820 1.144716 ACGGATCGACATGCATGCT 59.855 52.632 26.53 13.62 0.00 3.79
4297 4821 0.389025 ACGGATCGACATGCATGCTA 59.611 50.000 26.53 12.34 0.00 3.49
4298 4822 1.066136 CGGATCGACATGCATGCTAG 58.934 55.000 26.53 17.05 0.00 3.42
4299 4823 1.603931 CGGATCGACATGCATGCTAGT 60.604 52.381 26.53 16.83 0.00 2.57
4301 4825 2.222678 GGATCGACATGCATGCTAGTTG 59.777 50.000 26.53 19.26 0.00 3.16
4303 4827 1.012086 CGACATGCATGCTAGTTGCT 58.988 50.000 26.53 4.08 43.37 3.91
4305 4829 0.454600 ACATGCATGCTAGTTGCTGC 59.545 50.000 26.53 11.76 42.19 5.25
4306 4830 0.248907 CATGCATGCTAGTTGCTGCC 60.249 55.000 20.33 0.00 41.63 4.85
4307 4831 0.681887 ATGCATGCTAGTTGCTGCCA 60.682 50.000 20.33 0.00 41.63 4.92
4320 4874 1.904771 CTGCCAACCCTGGTCGATA 59.095 57.895 0.00 0.00 45.53 2.92
4325 4879 2.385803 CCAACCCTGGTCGATACTACT 58.614 52.381 0.00 0.00 38.00 2.57
4416 4976 3.306818 CTTTCTTTTTCTCTGCAGCAGC 58.693 45.455 18.43 0.00 42.57 5.25
4426 4986 2.820479 GCAGCAGCAGGAGCAGAG 60.820 66.667 0.00 0.00 45.49 3.35
4427 4987 2.820479 CAGCAGCAGGAGCAGAGC 60.820 66.667 0.00 0.00 45.49 4.09
4463 5025 2.703409 GCAATACGGCTCTGTGCG 59.297 61.111 0.00 0.00 44.05 5.34
4522 5084 5.597813 TTCTCGTGATGAAGAAAGAAAGC 57.402 39.130 0.00 0.00 0.00 3.51
4618 5181 1.218854 GGCCGGCGAGGTAAGTAAA 59.781 57.895 22.54 0.00 43.70 2.01
4621 5184 2.130395 GCCGGCGAGGTAAGTAAATAC 58.870 52.381 12.58 0.00 43.70 1.89
4622 5185 2.223900 GCCGGCGAGGTAAGTAAATACT 60.224 50.000 12.58 0.00 43.70 2.12
4760 5343 2.659016 CTGCTTCCTCGTCCTGCA 59.341 61.111 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.618861 CTGCTGTTAGACGACGGAAG 58.381 55.000 0.00 0.00 0.00 3.46
12 13 0.388134 GCTGCTGTTAGACGACGGAA 60.388 55.000 0.00 0.00 0.00 4.30
13 14 1.211969 GCTGCTGTTAGACGACGGA 59.788 57.895 0.00 0.00 0.00 4.69
14 15 1.073216 CTGCTGCTGTTAGACGACGG 61.073 60.000 0.00 0.00 0.00 4.79
15 16 1.073216 CCTGCTGCTGTTAGACGACG 61.073 60.000 0.00 0.00 0.00 5.12
16 17 0.038159 ACCTGCTGCTGTTAGACGAC 60.038 55.000 0.00 0.00 0.00 4.34
17 18 0.243907 GACCTGCTGCTGTTAGACGA 59.756 55.000 0.00 0.00 0.00 4.20
18 19 1.073216 CGACCTGCTGCTGTTAGACG 61.073 60.000 0.00 0.00 0.00 4.18
19 20 1.355066 GCGACCTGCTGCTGTTAGAC 61.355 60.000 0.00 0.00 41.73 2.59
20 21 1.079819 GCGACCTGCTGCTGTTAGA 60.080 57.895 0.00 0.00 41.73 2.10
21 22 2.447887 CGCGACCTGCTGCTGTTAG 61.448 63.158 0.00 0.00 43.27 2.34
22 23 2.432456 CGCGACCTGCTGCTGTTA 60.432 61.111 0.00 0.00 43.27 2.41
28 29 2.890847 CTAGAACCCGCGACCTGCTG 62.891 65.000 8.23 0.00 43.27 4.41
29 30 2.678934 TAGAACCCGCGACCTGCT 60.679 61.111 8.23 0.15 43.27 4.24
30 31 2.202756 CTAGAACCCGCGACCTGC 60.203 66.667 8.23 0.00 41.47 4.85
31 32 1.139095 GACTAGAACCCGCGACCTG 59.861 63.158 8.23 0.00 0.00 4.00
32 33 1.303888 TGACTAGAACCCGCGACCT 60.304 57.895 8.23 0.78 0.00 3.85
33 34 1.153881 GTGACTAGAACCCGCGACC 60.154 63.158 8.23 0.00 0.00 4.79
34 35 1.153881 GGTGACTAGAACCCGCGAC 60.154 63.158 8.23 0.00 0.00 5.19
35 36 3.281240 GGTGACTAGAACCCGCGA 58.719 61.111 8.23 0.00 0.00 5.87
93 94 3.065648 TCCTTCTTTTAAAACGCGCAGTT 59.934 39.130 5.73 10.13 46.76 3.16
94 95 2.614983 TCCTTCTTTTAAAACGCGCAGT 59.385 40.909 5.73 3.19 0.00 4.40
95 96 3.262135 TCCTTCTTTTAAAACGCGCAG 57.738 42.857 5.73 2.42 0.00 5.18
96 97 3.694535 TTCCTTCTTTTAAAACGCGCA 57.305 38.095 5.73 0.00 0.00 6.09
97 98 5.230516 TCTTTTTCCTTCTTTTAAAACGCGC 59.769 36.000 5.73 0.00 0.00 6.86
98 99 6.799786 TCTTTTTCCTTCTTTTAAAACGCG 57.200 33.333 3.53 3.53 0.00 6.01
99 100 9.257865 GTTTTCTTTTTCCTTCTTTTAAAACGC 57.742 29.630 0.00 0.00 0.00 4.84
106 107 8.869897 CGCTTTAGTTTTCTTTTTCCTTCTTTT 58.130 29.630 0.00 0.00 0.00 2.27
107 108 7.491372 CCGCTTTAGTTTTCTTTTTCCTTCTTT 59.509 33.333 0.00 0.00 0.00 2.52
108 109 6.978659 CCGCTTTAGTTTTCTTTTTCCTTCTT 59.021 34.615 0.00 0.00 0.00 2.52
109 110 6.461092 CCCGCTTTAGTTTTCTTTTTCCTTCT 60.461 38.462 0.00 0.00 0.00 2.85
110 111 5.690409 CCCGCTTTAGTTTTCTTTTTCCTTC 59.310 40.000 0.00 0.00 0.00 3.46
111 112 5.597806 CCCGCTTTAGTTTTCTTTTTCCTT 58.402 37.500 0.00 0.00 0.00 3.36
112 113 4.500887 GCCCGCTTTAGTTTTCTTTTTCCT 60.501 41.667 0.00 0.00 0.00 3.36
113 114 3.739300 GCCCGCTTTAGTTTTCTTTTTCC 59.261 43.478 0.00 0.00 0.00 3.13
114 115 3.739300 GGCCCGCTTTAGTTTTCTTTTTC 59.261 43.478 0.00 0.00 0.00 2.29
115 116 3.724374 GGCCCGCTTTAGTTTTCTTTTT 58.276 40.909 0.00 0.00 0.00 1.94
116 117 2.287970 CGGCCCGCTTTAGTTTTCTTTT 60.288 45.455 0.00 0.00 0.00 2.27
117 118 1.268625 CGGCCCGCTTTAGTTTTCTTT 59.731 47.619 0.00 0.00 0.00 2.52
118 119 0.879090 CGGCCCGCTTTAGTTTTCTT 59.121 50.000 0.00 0.00 0.00 2.52
119 120 0.958876 CCGGCCCGCTTTAGTTTTCT 60.959 55.000 0.00 0.00 0.00 2.52
120 121 1.504900 CCGGCCCGCTTTAGTTTTC 59.495 57.895 0.00 0.00 0.00 2.29
121 122 2.632544 GCCGGCCCGCTTTAGTTTT 61.633 57.895 18.11 0.00 0.00 2.43
122 123 3.060000 GCCGGCCCGCTTTAGTTT 61.060 61.111 18.11 0.00 0.00 2.66
140 141 2.342650 CCGCACTGTTCCCCATTGG 61.343 63.158 0.00 0.00 0.00 3.16
141 142 2.993471 GCCGCACTGTTCCCCATTG 61.993 63.158 0.00 0.00 0.00 2.82
142 143 2.676471 GCCGCACTGTTCCCCATT 60.676 61.111 0.00 0.00 0.00 3.16
146 147 2.332654 ATTTCGCCGCACTGTTCCC 61.333 57.895 0.00 0.00 0.00 3.97
147 148 1.154225 CATTTCGCCGCACTGTTCC 60.154 57.895 0.00 0.00 0.00 3.62
148 149 1.154225 CCATTTCGCCGCACTGTTC 60.154 57.895 0.00 0.00 0.00 3.18
149 150 2.953821 CCATTTCGCCGCACTGTT 59.046 55.556 0.00 0.00 0.00 3.16
150 151 3.737172 GCCATTTCGCCGCACTGT 61.737 61.111 0.00 0.00 0.00 3.55
151 152 3.736100 TGCCATTTCGCCGCACTG 61.736 61.111 0.00 0.00 0.00 3.66
155 156 3.355203 ATTGGTGCCATTTCGCCGC 62.355 57.895 0.00 0.00 39.42 6.53
156 157 1.226660 GATTGGTGCCATTTCGCCG 60.227 57.895 0.00 0.00 39.42 6.46
157 158 1.141665 GGATTGGTGCCATTTCGCC 59.858 57.895 0.00 0.00 37.15 5.54
158 159 1.141665 GGGATTGGTGCCATTTCGC 59.858 57.895 0.00 0.00 35.58 4.70
159 160 1.433064 CGGGATTGGTGCCATTTCG 59.567 57.895 0.00 0.00 35.13 3.46
160 161 1.815866 CCGGGATTGGTGCCATTTC 59.184 57.895 0.00 0.00 35.13 2.17
161 162 2.358372 GCCGGGATTGGTGCCATTT 61.358 57.895 2.18 0.00 35.13 2.32
162 163 2.759560 GCCGGGATTGGTGCCATT 60.760 61.111 2.18 0.00 35.13 3.16
163 164 4.839706 GGCCGGGATTGGTGCCAT 62.840 66.667 2.18 0.00 43.46 4.40
165 166 4.839706 ATGGCCGGGATTGGTGCC 62.840 66.667 2.18 0.00 44.27 5.01
166 167 3.219198 GATGGCCGGGATTGGTGC 61.219 66.667 2.18 0.00 0.00 5.01
167 168 2.519302 GGATGGCCGGGATTGGTG 60.519 66.667 2.18 0.00 0.00 4.17
168 169 2.696125 AGGATGGCCGGGATTGGT 60.696 61.111 2.18 0.00 39.96 3.67
169 170 2.203394 CAGGATGGCCGGGATTGG 60.203 66.667 2.18 0.00 39.96 3.16
170 171 1.825191 CACAGGATGGCCGGGATTG 60.825 63.158 2.18 0.00 43.62 2.67
171 172 2.000701 TCACAGGATGGCCGGGATT 61.001 57.895 2.18 0.00 43.62 3.01
172 173 2.366837 TCACAGGATGGCCGGGAT 60.367 61.111 2.18 0.00 43.62 3.85
173 174 3.399181 GTCACAGGATGGCCGGGA 61.399 66.667 2.18 0.00 43.62 5.14
174 175 3.716195 TGTCACAGGATGGCCGGG 61.716 66.667 2.18 0.00 43.62 5.73
175 176 2.436646 GTGTCACAGGATGGCCGG 60.437 66.667 0.00 0.00 43.62 6.13
176 177 2.815211 CGTGTCACAGGATGGCCG 60.815 66.667 3.42 0.00 43.62 6.13
177 178 1.741770 GACGTGTCACAGGATGGCC 60.742 63.158 4.06 0.00 43.62 5.36
178 179 2.094659 CGACGTGTCACAGGATGGC 61.095 63.158 4.06 0.00 43.62 4.40
179 180 0.319555 AACGACGTGTCACAGGATGG 60.320 55.000 4.06 0.00 43.62 3.51
180 181 0.784178 CAACGACGTGTCACAGGATG 59.216 55.000 4.06 0.00 46.00 3.51
181 182 0.671796 TCAACGACGTGTCACAGGAT 59.328 50.000 4.06 0.00 0.00 3.24
182 183 0.671796 ATCAACGACGTGTCACAGGA 59.328 50.000 4.06 0.00 0.00 3.86
183 184 1.060713 GATCAACGACGTGTCACAGG 58.939 55.000 0.00 0.00 0.00 4.00
184 185 1.060713 GGATCAACGACGTGTCACAG 58.939 55.000 0.00 0.00 0.00 3.66
185 186 0.671796 AGGATCAACGACGTGTCACA 59.328 50.000 0.00 0.00 0.00 3.58
186 187 1.060713 CAGGATCAACGACGTGTCAC 58.939 55.000 0.00 0.00 0.00 3.67
187 188 0.038618 CCAGGATCAACGACGTGTCA 60.039 55.000 0.00 0.00 0.00 3.58
188 189 0.038526 ACCAGGATCAACGACGTGTC 60.039 55.000 0.00 0.23 0.00 3.67
189 190 0.391597 AACCAGGATCAACGACGTGT 59.608 50.000 0.00 0.00 0.00 4.49
190 191 1.194547 CAAACCAGGATCAACGACGTG 59.805 52.381 0.00 0.00 0.00 4.49
191 192 1.508632 CAAACCAGGATCAACGACGT 58.491 50.000 0.00 0.00 0.00 4.34
192 193 0.165944 GCAAACCAGGATCAACGACG 59.834 55.000 0.00 0.00 0.00 5.12
193 194 0.521735 GGCAAACCAGGATCAACGAC 59.478 55.000 0.00 0.00 35.26 4.34
194 195 0.109532 TGGCAAACCAGGATCAACGA 59.890 50.000 0.00 0.00 42.67 3.85
195 196 2.639970 TGGCAAACCAGGATCAACG 58.360 52.632 0.00 0.00 42.67 4.10
205 206 0.310854 CTGGAGTCGTTTGGCAAACC 59.689 55.000 31.17 20.70 38.14 3.27
206 207 0.310854 CCTGGAGTCGTTTGGCAAAC 59.689 55.000 28.71 28.71 38.02 2.93
207 208 0.821711 CCCTGGAGTCGTTTGGCAAA 60.822 55.000 8.93 8.93 0.00 3.68
208 209 1.228124 CCCTGGAGTCGTTTGGCAA 60.228 57.895 0.00 0.00 0.00 4.52
209 210 1.990160 AACCCTGGAGTCGTTTGGCA 61.990 55.000 0.00 0.00 0.00 4.92
210 211 1.228154 AACCCTGGAGTCGTTTGGC 60.228 57.895 0.00 0.00 0.00 4.52
211 212 0.107831 TGAACCCTGGAGTCGTTTGG 59.892 55.000 0.00 0.00 0.00 3.28
212 213 1.202651 ACTGAACCCTGGAGTCGTTTG 60.203 52.381 0.00 0.00 0.00 2.93
213 214 1.129058 ACTGAACCCTGGAGTCGTTT 58.871 50.000 0.00 0.00 0.00 3.60
214 215 1.129058 AACTGAACCCTGGAGTCGTT 58.871 50.000 0.00 0.00 0.00 3.85
215 216 1.129058 AAACTGAACCCTGGAGTCGT 58.871 50.000 0.00 0.00 0.00 4.34
216 217 2.561419 TCTAAACTGAACCCTGGAGTCG 59.439 50.000 0.00 0.00 0.00 4.18
217 218 3.306849 GGTCTAAACTGAACCCTGGAGTC 60.307 52.174 0.00 0.00 0.00 3.36
218 219 2.638363 GGTCTAAACTGAACCCTGGAGT 59.362 50.000 0.00 0.00 0.00 3.85
219 220 2.353803 CGGTCTAAACTGAACCCTGGAG 60.354 54.545 0.00 0.00 33.20 3.86
220 221 1.621814 CGGTCTAAACTGAACCCTGGA 59.378 52.381 0.00 0.00 33.20 3.86
221 222 1.338769 CCGGTCTAAACTGAACCCTGG 60.339 57.143 0.00 0.00 33.20 4.45
222 223 1.338769 CCCGGTCTAAACTGAACCCTG 60.339 57.143 0.00 0.00 33.20 4.45
223 224 0.981943 CCCGGTCTAAACTGAACCCT 59.018 55.000 0.00 0.00 33.20 4.34
224 225 0.978907 TCCCGGTCTAAACTGAACCC 59.021 55.000 0.00 0.00 33.20 4.11
225 226 3.007635 CAATCCCGGTCTAAACTGAACC 58.992 50.000 0.00 0.00 33.20 3.62
226 227 2.418976 GCAATCCCGGTCTAAACTGAAC 59.581 50.000 0.00 0.00 33.20 3.18
227 228 2.039216 TGCAATCCCGGTCTAAACTGAA 59.961 45.455 0.00 0.00 33.20 3.02
228 229 1.626321 TGCAATCCCGGTCTAAACTGA 59.374 47.619 0.00 0.00 33.20 3.41
229 230 2.107950 TGCAATCCCGGTCTAAACTG 57.892 50.000 0.00 0.00 0.00 3.16
230 231 3.454812 ACTATGCAATCCCGGTCTAAACT 59.545 43.478 0.00 0.00 0.00 2.66
231 232 3.805207 ACTATGCAATCCCGGTCTAAAC 58.195 45.455 0.00 0.00 0.00 2.01
232 233 4.080807 TGAACTATGCAATCCCGGTCTAAA 60.081 41.667 0.00 0.00 0.00 1.85
233 234 3.452990 TGAACTATGCAATCCCGGTCTAA 59.547 43.478 0.00 0.00 0.00 2.10
234 235 3.035363 TGAACTATGCAATCCCGGTCTA 58.965 45.455 0.00 0.00 0.00 2.59
235 236 1.837439 TGAACTATGCAATCCCGGTCT 59.163 47.619 0.00 0.00 0.00 3.85
236 237 2.213499 CTGAACTATGCAATCCCGGTC 58.787 52.381 0.00 0.00 0.00 4.79
237 238 1.747206 GCTGAACTATGCAATCCCGGT 60.747 52.381 0.00 0.00 0.00 5.28
238 239 0.947244 GCTGAACTATGCAATCCCGG 59.053 55.000 0.00 0.00 0.00 5.73
239 240 0.583438 CGCTGAACTATGCAATCCCG 59.417 55.000 0.00 0.00 0.00 5.14
240 241 1.331756 CACGCTGAACTATGCAATCCC 59.668 52.381 0.00 0.00 0.00 3.85
241 242 1.268234 GCACGCTGAACTATGCAATCC 60.268 52.381 0.00 0.00 38.00 3.01
242 243 1.398041 TGCACGCTGAACTATGCAATC 59.602 47.619 0.00 0.00 44.72 2.67
243 244 1.452110 TGCACGCTGAACTATGCAAT 58.548 45.000 0.00 0.00 44.72 3.56
244 245 2.925594 TGCACGCTGAACTATGCAA 58.074 47.368 0.00 0.00 44.72 4.08
245 246 1.398041 GATTGCACGCTGAACTATGCA 59.602 47.619 0.00 0.00 45.94 3.96
246 247 1.593070 CGATTGCACGCTGAACTATGC 60.593 52.381 0.00 0.00 38.59 3.14
247 248 1.926510 TCGATTGCACGCTGAACTATG 59.073 47.619 0.00 0.00 0.00 2.23
248 249 1.927174 GTCGATTGCACGCTGAACTAT 59.073 47.619 0.00 0.00 0.00 2.12
249 250 1.346365 GTCGATTGCACGCTGAACTA 58.654 50.000 0.00 0.00 0.00 2.24
250 251 1.291877 GGTCGATTGCACGCTGAACT 61.292 55.000 0.00 0.00 0.00 3.01
251 252 1.132640 GGTCGATTGCACGCTGAAC 59.867 57.895 0.00 0.00 0.00 3.18
252 253 2.379634 CGGTCGATTGCACGCTGAA 61.380 57.895 0.00 0.00 0.00 3.02
253 254 2.809174 CGGTCGATTGCACGCTGA 60.809 61.111 0.00 0.00 0.00 4.26
254 255 3.853330 CCGGTCGATTGCACGCTG 61.853 66.667 0.00 0.00 0.00 5.18
257 258 1.366111 AAATCCCGGTCGATTGCACG 61.366 55.000 6.70 0.00 32.75 5.34
258 259 0.377203 GAAATCCCGGTCGATTGCAC 59.623 55.000 6.70 0.16 32.75 4.57
259 260 1.087202 CGAAATCCCGGTCGATTGCA 61.087 55.000 6.34 0.00 39.64 4.08
260 261 0.808453 TCGAAATCCCGGTCGATTGC 60.808 55.000 10.52 6.13 41.13 3.56
261 262 0.928229 GTCGAAATCCCGGTCGATTG 59.072 55.000 16.67 2.16 46.91 2.67
262 263 0.533491 TGTCGAAATCCCGGTCGATT 59.467 50.000 16.67 8.90 46.91 3.34
263 264 0.750850 ATGTCGAAATCCCGGTCGAT 59.249 50.000 16.67 2.81 46.91 3.59
264 265 0.179121 CATGTCGAAATCCCGGTCGA 60.179 55.000 10.52 10.52 43.61 4.20
265 266 0.179121 TCATGTCGAAATCCCGGTCG 60.179 55.000 5.87 5.87 38.62 4.79
266 267 1.571919 CTCATGTCGAAATCCCGGTC 58.428 55.000 0.00 0.00 0.00 4.79
267 268 0.178068 CCTCATGTCGAAATCCCGGT 59.822 55.000 0.00 0.00 0.00 5.28
268 269 0.532862 CCCTCATGTCGAAATCCCGG 60.533 60.000 0.00 0.00 0.00 5.73
269 270 0.178068 ACCCTCATGTCGAAATCCCG 59.822 55.000 0.00 0.00 0.00 5.14
270 271 2.420058 AACCCTCATGTCGAAATCCC 57.580 50.000 0.00 0.00 0.00 3.85
271 272 3.081804 ACAAACCCTCATGTCGAAATCC 58.918 45.455 0.00 0.00 0.00 3.01
272 273 4.766404 AACAAACCCTCATGTCGAAATC 57.234 40.909 0.00 0.00 0.00 2.17
273 274 4.320202 CGAAACAAACCCTCATGTCGAAAT 60.320 41.667 0.00 0.00 0.00 2.17
274 275 3.002862 CGAAACAAACCCTCATGTCGAAA 59.997 43.478 0.00 0.00 0.00 3.46
275 276 2.546368 CGAAACAAACCCTCATGTCGAA 59.454 45.455 0.00 0.00 0.00 3.71
276 277 2.139917 CGAAACAAACCCTCATGTCGA 58.860 47.619 0.00 0.00 0.00 4.20
277 278 1.399727 GCGAAACAAACCCTCATGTCG 60.400 52.381 0.00 0.00 0.00 4.35
278 279 1.068541 GGCGAAACAAACCCTCATGTC 60.069 52.381 0.00 0.00 0.00 3.06
279 280 0.958822 GGCGAAACAAACCCTCATGT 59.041 50.000 0.00 0.00 0.00 3.21
280 281 0.109781 CGGCGAAACAAACCCTCATG 60.110 55.000 0.00 0.00 0.00 3.07
281 282 0.250553 TCGGCGAAACAAACCCTCAT 60.251 50.000 7.35 0.00 0.00 2.90
282 283 0.464013 TTCGGCGAAACAAACCCTCA 60.464 50.000 21.53 0.00 0.00 3.86
283 284 0.040692 GTTCGGCGAAACAAACCCTC 60.041 55.000 25.48 4.53 0.00 4.30
284 285 1.449726 GGTTCGGCGAAACAAACCCT 61.450 55.000 30.96 0.00 36.06 4.34
285 286 1.008194 GGTTCGGCGAAACAAACCC 60.008 57.895 30.96 19.40 36.06 4.11
286 287 0.040692 GAGGTTCGGCGAAACAAACC 60.041 55.000 35.77 26.64 41.20 3.27
287 288 0.942252 AGAGGTTCGGCGAAACAAAC 59.058 50.000 35.77 25.45 30.66 2.93
288 289 2.137523 GTAGAGGTTCGGCGAAACAAA 58.862 47.619 35.77 19.52 30.66 2.83
289 290 1.787012 GTAGAGGTTCGGCGAAACAA 58.213 50.000 35.77 19.87 30.66 2.83
290 291 0.387622 CGTAGAGGTTCGGCGAAACA 60.388 55.000 35.77 15.95 30.66 2.83
291 292 0.109597 TCGTAGAGGTTCGGCGAAAC 60.110 55.000 29.11 29.11 0.00 2.78
292 293 0.597568 TTCGTAGAGGTTCGGCGAAA 59.402 50.000 25.48 5.23 38.43 3.46
293 294 0.813184 ATTCGTAGAGGTTCGGCGAA 59.187 50.000 19.83 19.83 39.82 4.70
294 295 0.813184 AATTCGTAGAGGTTCGGCGA 59.187 50.000 4.99 4.99 38.43 5.54
295 296 1.197910 GAATTCGTAGAGGTTCGGCG 58.802 55.000 0.00 0.00 38.43 6.46
296 297 2.194271 CTGAATTCGTAGAGGTTCGGC 58.806 52.381 0.04 0.00 38.43 5.54
297 298 2.481449 CCCTGAATTCGTAGAGGTTCGG 60.481 54.545 8.35 0.00 38.43 4.30
298 299 2.165845 ACCCTGAATTCGTAGAGGTTCG 59.834 50.000 8.35 0.00 38.43 3.95
299 300 3.889520 ACCCTGAATTCGTAGAGGTTC 57.110 47.619 8.35 0.00 38.43 3.62
300 301 4.635699 AAACCCTGAATTCGTAGAGGTT 57.364 40.909 8.35 9.26 38.43 3.50
301 302 5.750352 TTAAACCCTGAATTCGTAGAGGT 57.250 39.130 8.35 4.40 38.43 3.85
302 303 7.415206 CCATTTTAAACCCTGAATTCGTAGAGG 60.415 40.741 0.04 1.80 38.43 3.69
303 304 7.335924 TCCATTTTAAACCCTGAATTCGTAGAG 59.664 37.037 0.04 0.00 38.43 2.43
304 305 7.120138 GTCCATTTTAAACCCTGAATTCGTAGA 59.880 37.037 0.04 0.00 0.00 2.59
305 306 7.120726 AGTCCATTTTAAACCCTGAATTCGTAG 59.879 37.037 0.04 0.00 0.00 3.51
306 307 6.943718 AGTCCATTTTAAACCCTGAATTCGTA 59.056 34.615 0.04 0.00 0.00 3.43
307 308 5.773176 AGTCCATTTTAAACCCTGAATTCGT 59.227 36.000 0.04 0.00 0.00 3.85
308 309 6.267496 AGTCCATTTTAAACCCTGAATTCG 57.733 37.500 0.04 0.00 0.00 3.34
309 310 8.902540 AAAAGTCCATTTTAAACCCTGAATTC 57.097 30.769 0.00 0.00 39.36 2.17
310 311 9.337396 GAAAAAGTCCATTTTAAACCCTGAATT 57.663 29.630 0.00 0.00 40.27 2.17
311 312 7.936847 GGAAAAAGTCCATTTTAAACCCTGAAT 59.063 33.333 0.00 0.00 46.97 2.57
312 313 7.276658 GGAAAAAGTCCATTTTAAACCCTGAA 58.723 34.615 0.00 0.00 46.97 3.02
313 314 6.822442 GGAAAAAGTCCATTTTAAACCCTGA 58.178 36.000 0.00 0.00 46.97 3.86
328 329 6.405176 CCATTCTGCAATAGAGGGAAAAAGTC 60.405 42.308 0.00 0.00 36.61 3.01
329 330 5.420104 CCATTCTGCAATAGAGGGAAAAAGT 59.580 40.000 0.00 0.00 36.61 2.66
330 331 5.680665 GCCATTCTGCAATAGAGGGAAAAAG 60.681 44.000 0.00 0.00 36.61 2.27
331 332 4.160252 GCCATTCTGCAATAGAGGGAAAAA 59.840 41.667 0.00 0.00 36.61 1.94
332 333 3.701040 GCCATTCTGCAATAGAGGGAAAA 59.299 43.478 0.00 0.00 36.61 2.29
333 334 3.290710 GCCATTCTGCAATAGAGGGAAA 58.709 45.455 0.00 0.00 36.61 3.13
334 335 2.241941 TGCCATTCTGCAATAGAGGGAA 59.758 45.455 0.00 0.00 38.56 3.97
335 336 1.845791 TGCCATTCTGCAATAGAGGGA 59.154 47.619 0.00 0.00 38.56 4.20
336 337 2.353357 TGCCATTCTGCAATAGAGGG 57.647 50.000 0.00 0.00 38.56 4.30
349 350 3.007398 TGCGTTTTAGGGATTTTGCCATT 59.993 39.130 0.00 0.00 0.00 3.16
423 424 4.350520 AGGGAGAAATTTTTCATGCCCAAA 59.649 37.500 20.84 0.00 42.62 3.28
448 449 7.572523 ACAGAGAGATTTGTCATGTCAAAAA 57.427 32.000 19.46 1.37 40.05 1.94
454 455 6.992123 TGTTGTAACAGAGAGATTTGTCATGT 59.008 34.615 0.00 0.00 34.30 3.21
460 461 7.425577 TGTCATGTTGTAACAGAGAGATTTG 57.574 36.000 3.66 0.00 43.04 2.32
485 486 3.262420 CTCCGATGAAACGTTCAGGAAT 58.738 45.455 0.00 0.00 43.98 3.01
512 513 5.123936 GCCACTAGGGGTGTTATCTAAAAG 58.876 45.833 13.95 0.00 43.94 2.27
513 514 4.383335 CGCCACTAGGGGTGTTATCTAAAA 60.383 45.833 16.97 0.00 43.94 1.52
526 527 2.202570 CGAACGACGCCACTAGGG 60.203 66.667 0.00 0.00 40.85 3.53
539 540 2.552315 TGGGAAGTTCATTCAAGCGAAC 59.448 45.455 5.01 0.00 41.48 3.95
553 554 0.250166 CGAACGTTCCCTTGGGAAGT 60.250 55.000 22.07 16.54 0.00 3.01
572 573 0.680061 AGAAAGACCCTGACACGGAC 59.320 55.000 0.00 0.00 0.00 4.79
601 602 4.167756 AGGATCCTAATAAGGGGCTGAT 57.832 45.455 14.27 0.00 43.84 2.90
670 671 8.514330 TTTTCAGCCGGTCTTTATTATATGTT 57.486 30.769 1.90 0.00 0.00 2.71
746 748 3.483558 GCAAGAACGCAAAGAGTTTTCAG 59.516 43.478 0.00 0.00 31.14 3.02
753 755 0.519077 GGGAGCAAGAACGCAAAGAG 59.481 55.000 0.00 0.00 0.00 2.85
755 757 1.172180 TGGGGAGCAAGAACGCAAAG 61.172 55.000 0.00 0.00 0.00 2.77
760 762 2.325082 CCGTTGGGGAGCAAGAACG 61.325 63.158 0.00 0.00 40.62 3.95
761 763 3.668386 CCGTTGGGGAGCAAGAAC 58.332 61.111 0.00 0.00 38.47 3.01
1029 1454 3.215597 CTGTGCGGTACCGTGGTGA 62.216 63.158 33.34 13.60 42.09 4.02
1241 1688 2.124942 GTAGTGCTGCTCCTGGCC 60.125 66.667 0.00 0.00 40.92 5.36
1374 1838 4.202673 ACCAGTGATAACAATTTGGGGAGT 60.203 41.667 0.78 0.00 32.34 3.85
1421 1885 2.090887 ACCGCCCCTTAGTAGGATAAGT 60.091 50.000 0.00 0.00 45.05 2.24
1457 1921 4.453480 TTGTCCCAAACCATTCTCTCTT 57.547 40.909 0.00 0.00 0.00 2.85
1465 1959 5.672194 AGATAGGAGTATTGTCCCAAACCAT 59.328 40.000 0.00 0.00 37.31 3.55
1501 1995 8.055181 AGGGAGAACATAAATTCAGAAATGCTA 58.945 33.333 0.00 0.00 0.00 3.49
1536 2030 4.041740 TCTAACTGTCCATCACGTATGC 57.958 45.455 0.00 0.00 33.92 3.14
1537 2031 6.961359 TTTTCTAACTGTCCATCACGTATG 57.039 37.500 0.00 0.00 35.15 2.39
1538 2032 7.606456 ACATTTTTCTAACTGTCCATCACGTAT 59.394 33.333 0.00 0.00 0.00 3.06
1539 2033 6.932400 ACATTTTTCTAACTGTCCATCACGTA 59.068 34.615 0.00 0.00 0.00 3.57
1594 2110 7.000472 TGACCAATGAGGATAAGAAATGGATC 59.000 38.462 0.00 0.00 41.22 3.36
1615 2131 1.134965 CACCACTACAGCTAGCTGACC 60.135 57.143 43.42 3.77 46.30 4.02
1616 2132 1.546476 ACACCACTACAGCTAGCTGAC 59.454 52.381 43.42 4.18 46.30 3.51
1639 2155 4.018960 ACTTGCATAATCTGGACCAGAAGT 60.019 41.667 27.69 20.22 44.04 3.01
1694 2210 1.532437 CTGACTTGAGCGCAACATGAA 59.468 47.619 11.47 5.56 0.00 2.57
1703 2219 6.834959 AATTGATATACACTGACTTGAGCG 57.165 37.500 0.00 0.00 0.00 5.03
1826 2342 2.880268 GCTGCACATGCCATCTAATGTA 59.120 45.455 0.49 0.00 41.18 2.29
1894 2410 3.054361 ACAAGGCATCTAAAGGGACGATT 60.054 43.478 0.00 0.00 0.00 3.34
2017 2534 6.478512 TTAAATTGGGAAAGCAAGTGTCTT 57.521 33.333 0.00 0.00 0.00 3.01
2245 2762 1.519455 GGCCTGTCGGTTGATCTCG 60.519 63.158 0.00 0.00 0.00 4.04
2252 2769 1.005394 CTAACGTGGCCTGTCGGTT 60.005 57.895 3.32 3.56 0.00 4.44
2501 3019 9.877178 AGGTAAAACTCACTTGATTATAGACAG 57.123 33.333 0.00 0.00 0.00 3.51
2509 3027 7.506114 TCTACACAGGTAAAACTCACTTGATT 58.494 34.615 0.00 0.00 0.00 2.57
2524 3042 4.904251 AGCCATATCAAGATCTACACAGGT 59.096 41.667 0.00 0.00 0.00 4.00
2527 3045 5.876651 ACAGCCATATCAAGATCTACACA 57.123 39.130 0.00 0.00 0.00 3.72
2528 3046 5.049818 GCAACAGCCATATCAAGATCTACAC 60.050 44.000 0.00 0.00 0.00 2.90
2555 3073 5.270893 ACACTTTTAAGTTTTGGCCGAAT 57.729 34.783 6.16 0.00 37.08 3.34
2561 3079 8.769891 ACAAACAAGAACACTTTTAAGTTTTGG 58.230 29.630 13.72 0.00 37.08 3.28
2869 3387 1.463674 GTCTATGGTTGTTGGGGCTG 58.536 55.000 0.00 0.00 0.00 4.85
2929 3447 2.692709 TGCTTTTCCCCCTTGATGAA 57.307 45.000 0.00 0.00 0.00 2.57
3503 4021 2.328099 CCAGTGGCGTCTTGGCTTC 61.328 63.158 0.00 0.00 45.14 3.86
3555 4073 3.830192 CGGGTTCGTACGGGGAGG 61.830 72.222 16.52 0.00 0.00 4.30
3631 4149 2.847441 TCGGTATCTAGCACGTCTGAT 58.153 47.619 0.00 0.00 0.00 2.90
3643 4161 2.558795 CTCATCGGGTTCATCGGTATCT 59.441 50.000 0.00 0.00 0.00 1.98
3661 4179 2.531771 TCGAATGGTTCCAGGTACTCA 58.468 47.619 0.00 0.00 34.60 3.41
3664 4182 4.213482 GCATTATCGAATGGTTCCAGGTAC 59.787 45.833 0.00 0.00 42.44 3.34
3667 4185 3.904136 GCATTATCGAATGGTTCCAGG 57.096 47.619 0.00 0.00 42.44 4.45
3679 4197 7.592439 ATCTGTAACATCATCAGCATTATCG 57.408 36.000 0.00 0.00 0.00 2.92
3683 4201 6.293698 TGCTATCTGTAACATCATCAGCATT 58.706 36.000 0.00 0.00 31.97 3.56
3694 4212 3.327757 GGGATGGGATGCTATCTGTAACA 59.672 47.826 10.32 0.00 0.00 2.41
3879 4397 2.350895 CAGGATTGCCACCACCGA 59.649 61.111 0.00 0.00 36.29 4.69
3899 4417 1.890041 CAAAACGGTGGGCTCGTCA 60.890 57.895 0.00 0.00 40.18 4.35
3900 4418 2.943653 CAAAACGGTGGGCTCGTC 59.056 61.111 0.00 0.00 40.18 4.20
3901 4419 3.284449 GCAAAACGGTGGGCTCGT 61.284 61.111 0.00 0.00 43.14 4.18
3952 4470 3.199946 TCTTGGCGAAATAGGAATGGAGT 59.800 43.478 0.00 0.00 0.00 3.85
4051 4570 1.066858 GGACATGACAGCGAAAGGAGA 60.067 52.381 0.00 0.00 0.00 3.71
4052 4571 1.363744 GGACATGACAGCGAAAGGAG 58.636 55.000 0.00 0.00 0.00 3.69
4053 4572 0.036388 GGGACATGACAGCGAAAGGA 60.036 55.000 0.00 0.00 0.00 3.36
4072 4591 7.916450 AGTCTAGCTAATTAACTAACGAAGCTG 59.084 37.037 4.29 0.00 0.00 4.24
4086 4605 5.838531 ACGCTAACAGAGTCTAGCTAATT 57.161 39.130 10.84 0.00 38.72 1.40
4094 4613 9.918630 TTTACTTATTTAACGCTAACAGAGTCT 57.081 29.630 0.00 0.00 0.00 3.24
4106 4625 7.695201 GGGCTTACAGCTTTTACTTATTTAACG 59.305 37.037 0.00 0.00 41.99 3.18
4132 4655 1.079888 GGAAACAAATGCCCCAGCG 60.080 57.895 0.00 0.00 44.31 5.18
4161 4685 2.100749 GCCTTGCCTACAAAACAACAGT 59.899 45.455 0.00 0.00 34.74 3.55
4170 4694 1.737838 CAAGATCGCCTTGCCTACAA 58.262 50.000 4.82 0.00 44.90 2.41
4171 4695 3.458872 CAAGATCGCCTTGCCTACA 57.541 52.632 4.82 0.00 44.90 2.74
4190 4714 0.324460 ACCGAGTCGAGGAGGGAAAT 60.324 55.000 15.64 0.00 0.00 2.17
4204 4728 1.268899 ACTGACGAGTAACCAACCGAG 59.731 52.381 0.00 0.00 0.00 4.63
4234 4758 1.671054 GAGCCACCGCAGCTTTACA 60.671 57.895 0.00 0.00 41.75 2.41
4256 4780 2.890474 CACAGTATCGGCGCCACC 60.890 66.667 28.98 10.49 0.00 4.61
4273 4797 2.240500 GCATGTCGATCCGTGGAGC 61.241 63.158 0.00 0.00 0.00 4.70
4276 4800 1.936658 CATGCATGTCGATCCGTGG 59.063 57.895 18.91 0.00 0.00 4.94
4277 4801 1.156034 AGCATGCATGTCGATCCGTG 61.156 55.000 26.79 0.05 0.00 4.94
4278 4802 0.389025 TAGCATGCATGTCGATCCGT 59.611 50.000 26.79 6.14 0.00 4.69
4279 4803 1.066136 CTAGCATGCATGTCGATCCG 58.934 55.000 26.79 6.27 0.00 4.18
4280 4804 2.160822 ACTAGCATGCATGTCGATCC 57.839 50.000 26.79 9.88 0.00 3.36
4281 4805 2.349249 GCAACTAGCATGCATGTCGATC 60.349 50.000 26.79 10.60 43.29 3.69
4282 4806 1.600957 GCAACTAGCATGCATGTCGAT 59.399 47.619 26.79 13.50 43.29 3.59
4284 4808 3.521534 GCAACTAGCATGCATGTCG 57.478 52.632 26.79 17.18 43.29 4.35
4294 4818 1.303643 AGGGTTGGCAGCAACTAGC 60.304 57.895 3.14 0.00 46.19 3.42
4296 4820 1.074775 CCAGGGTTGGCAGCAACTA 59.925 57.895 3.14 0.00 37.73 2.24
4297 4821 2.203538 CCAGGGTTGGCAGCAACT 60.204 61.111 3.14 0.00 37.73 3.16
4305 4829 5.981804 AGATAGTAGTATCGACCAGGGTTGG 60.982 48.000 11.16 0.00 43.71 3.77
4306 4830 5.071370 AGATAGTAGTATCGACCAGGGTTG 58.929 45.833 11.16 0.00 40.22 3.77
4307 4831 5.073417 AGAGATAGTAGTATCGACCAGGGTT 59.927 44.000 11.16 0.00 40.22 4.11
4351 4905 2.187958 TGCTTGTACTGCCAGTATCCT 58.812 47.619 8.00 0.00 32.65 3.24
4352 4906 2.691409 TGCTTGTACTGCCAGTATCC 57.309 50.000 8.00 0.00 32.65 2.59
4365 4919 3.382546 GCATCAGGAAATACCATGCTTGT 59.617 43.478 0.00 0.00 41.74 3.16
4368 4922 3.589951 AGCATCAGGAAATACCATGCT 57.410 42.857 0.00 0.00 46.61 3.79
4485 5047 2.210341 GAGAAAAGCTGCAGGCAGGC 62.210 60.000 21.63 13.93 43.77 4.85
4486 5048 1.881602 GAGAAAAGCTGCAGGCAGG 59.118 57.895 21.63 5.08 43.77 4.85
4487 5049 1.233285 ACGAGAAAAGCTGCAGGCAG 61.233 55.000 17.12 16.68 46.15 4.85
4488 5050 1.227943 ACGAGAAAAGCTGCAGGCA 60.228 52.632 17.12 0.00 44.79 4.75
4489 5051 1.208614 CACGAGAAAAGCTGCAGGC 59.791 57.895 17.12 7.98 42.19 4.85
4522 5084 3.921677 AGGATTTGATTGCTGTGCTTTG 58.078 40.909 0.00 0.00 0.00 2.77
4618 5181 3.829026 TCACAAGCTGAGTGAGTGAGTAT 59.171 43.478 15.95 0.00 40.80 2.12
4621 5184 2.808523 TCACAAGCTGAGTGAGTGAG 57.191 50.000 15.95 0.00 40.80 3.51
4729 5312 3.695606 GCAGGGGCACGTGAGAGA 61.696 66.667 22.23 0.00 40.72 3.10
4730 5313 3.245668 AAGCAGGGGCACGTGAGAG 62.246 63.158 22.23 4.63 44.61 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.