Multiple sequence alignment - TraesCS6D01G361400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G361400 chr6D 100.000 4541 0 0 1 4541 452486884 452482344 0.000000e+00 8386.0
1 TraesCS6D01G361400 chr6D 79.533 1583 288 24 1976 3542 452907188 452908750 0.000000e+00 1096.0
2 TraesCS6D01G361400 chr6D 79.112 1599 278 35 1976 3555 452931483 452929922 0.000000e+00 1051.0
3 TraesCS6D01G361400 chr6D 80.234 855 134 25 1055 1884 452906287 452907131 1.080000e-170 610.0
4 TraesCS6D01G361400 chr6D 84.028 576 84 7 1366 1936 452848802 452849374 8.590000e-152 547.0
5 TraesCS6D01G361400 chr6D 100.000 28 0 0 1 28 382723344 382723371 8.000000e-03 52.8
6 TraesCS6D01G361400 chr6A 93.031 2425 109 23 1995 4375 598156380 598153972 0.000000e+00 3487.0
7 TraesCS6D01G361400 chr6A 93.900 1246 59 9 759 1993 598157974 598156735 0.000000e+00 1864.0
8 TraesCS6D01G361400 chr6A 78.423 1585 292 36 1977 3541 598925872 598924318 0.000000e+00 987.0
9 TraesCS6D01G361400 chr6A 80.785 1249 226 9 2305 3542 598860599 598861844 0.000000e+00 965.0
10 TraesCS6D01G361400 chr6A 83.732 836 113 15 1076 1891 598926722 598925890 0.000000e+00 769.0
11 TraesCS6D01G361400 chr6A 78.186 1169 189 42 1088 2221 598789700 598790837 0.000000e+00 686.0
12 TraesCS6D01G361400 chr6A 77.040 1189 214 38 1070 2218 598859293 598860462 2.980000e-176 628.0
13 TraesCS6D01G361400 chr6A 81.228 570 90 9 1366 1931 598810408 598810964 1.160000e-120 444.0
14 TraesCS6D01G361400 chr6A 80.088 452 56 15 92 519 598163540 598163099 5.710000e-79 305.0
15 TraesCS6D01G361400 chr6A 92.308 91 6 1 678 768 598163107 598163018 1.330000e-25 128.0
16 TraesCS6D01G361400 chr6A 78.689 183 24 9 3957 4132 598071628 598071454 1.730000e-19 108.0
17 TraesCS6D01G361400 chr6A 90.000 70 5 2 1137 1205 598810261 598810329 6.260000e-14 89.8
18 TraesCS6D01G361400 chr6A 100.000 29 0 0 1 29 516611726 516611698 2.000000e-03 54.7
19 TraesCS6D01G361400 chr6B 93.255 1957 112 13 2005 3960 687179497 687177560 0.000000e+00 2865.0
20 TraesCS6D01G361400 chr6B 88.174 1632 157 29 2257 3873 687255830 687257440 0.000000e+00 1912.0
21 TraesCS6D01G361400 chr6B 92.924 1173 55 13 755 1905 687180781 687179615 0.000000e+00 1681.0
22 TraesCS6D01G361400 chr6B 77.355 1603 278 44 1976 3555 688125527 688123987 0.000000e+00 870.0
23 TraesCS6D01G361400 chr6B 80.120 1162 163 38 1079 2204 687873705 687874834 0.000000e+00 804.0
24 TraesCS6D01G361400 chr6B 84.691 614 89 4 1255 1864 688126199 688125587 3.880000e-170 608.0
25 TraesCS6D01G361400 chr6B 79.237 891 145 30 1062 1921 687954905 687955786 6.550000e-163 584.0
26 TraesCS6D01G361400 chr6B 81.157 743 123 13 1084 1812 687959351 687960090 8.470000e-162 580.0
27 TraesCS6D01G361400 chr6B 83.075 644 84 17 1087 1709 688080566 688079927 3.070000e-156 562.0
28 TraesCS6D01G361400 chr6B 88.986 345 38 0 1580 1924 687255239 687255583 1.170000e-115 427.0
29 TraesCS6D01G361400 chr6B 87.069 348 37 6 22 367 687181383 687181042 1.980000e-103 387.0
30 TraesCS6D01G361400 chr6B 92.975 242 14 2 1983 2221 687255590 687255831 2.600000e-92 350.0
31 TraesCS6D01G361400 chr6B 84.649 228 30 3 1979 2204 688033778 688033554 5.910000e-54 222.0
32 TraesCS6D01G361400 chr6B 86.705 173 15 4 4376 4540 545207097 545207269 7.760000e-43 185.0
33 TraesCS6D01G361400 chr6B 83.146 178 24 4 3959 4134 687303203 687303376 1.690000e-34 158.0
34 TraesCS6D01G361400 chr6B 88.095 126 11 4 1087 1210 688127642 688127519 3.660000e-31 147.0
35 TraesCS6D01G361400 chr6B 84.672 137 21 0 2021 2157 688079811 688079675 2.200000e-28 137.0
36 TraesCS6D01G361400 chr6B 85.849 106 7 1 4047 4152 687170878 687170781 6.210000e-19 106.0
37 TraesCS6D01G361400 chr6B 81.046 153 12 7 368 519 687181009 687180873 6.210000e-19 106.0
38 TraesCS6D01G361400 chr6B 90.323 62 4 2 3989 4049 687177566 687177506 3.770000e-11 80.5
39 TraesCS6D01G361400 chr6B 100.000 29 0 0 1 29 651599425 651599397 2.000000e-03 54.7
40 TraesCS6D01G361400 chr1B 87.429 175 14 4 4374 4540 496194434 496194608 1.290000e-45 195.0
41 TraesCS6D01G361400 chr4B 87.195 164 11 10 4374 4529 14275528 14275689 1.300000e-40 178.0
42 TraesCS6D01G361400 chr4B 96.970 33 0 1 1 33 17661793 17661824 2.000000e-03 54.7
43 TraesCS6D01G361400 chr7A 86.585 164 13 9 4374 4529 134981559 134981721 6.040000e-39 172.0
44 TraesCS6D01G361400 chr7A 85.625 160 16 7 4374 4529 685900997 685900841 1.310000e-35 161.0
45 TraesCS6D01G361400 chr2D 85.549 173 12 10 4374 4536 2745440 2745271 7.810000e-38 169.0
46 TraesCS6D01G361400 chr2D 96.875 32 1 0 641 672 546414412 546414381 2.000000e-03 54.7
47 TraesCS6D01G361400 chr4A 83.432 169 22 5 4374 4536 733058515 733058347 7.870000e-33 152.0
48 TraesCS6D01G361400 chr4A 83.735 166 14 10 4374 4529 32061799 32061961 1.320000e-30 145.0
49 TraesCS6D01G361400 chr4A 100.000 29 0 0 1 29 353064096 353064124 2.000000e-03 54.7
50 TraesCS6D01G361400 chr4A 100.000 28 0 0 1 28 508458203 508458230 8.000000e-03 52.8
51 TraesCS6D01G361400 chr5B 82.759 174 20 9 4374 4538 7539842 7539670 3.660000e-31 147.0
52 TraesCS6D01G361400 chr5B 94.737 38 0 2 546 581 617713102 617713139 1.760000e-04 58.4
53 TraesCS6D01G361400 chr1D 87.324 71 8 1 4064 4134 469823560 469823629 3.770000e-11 80.5
54 TraesCS6D01G361400 chr1D 95.000 40 1 1 641 680 435360591 435360553 1.360000e-05 62.1
55 TraesCS6D01G361400 chr1D 96.970 33 1 0 1136 1168 7073697 7073729 6.350000e-04 56.5
56 TraesCS6D01G361400 chr1D 100.000 28 0 0 1 28 305341619 305341592 8.000000e-03 52.8
57 TraesCS6D01G361400 chr7B 86.154 65 3 6 503 566 623502331 623502390 1.050000e-06 65.8
58 TraesCS6D01G361400 chr5D 96.970 33 1 0 1136 1168 516637417 516637449 6.350000e-04 56.5
59 TraesCS6D01G361400 chr1A 96.970 33 1 0 1136 1168 8665129 8665161 6.350000e-04 56.5
60 TraesCS6D01G361400 chr3B 100.000 29 0 0 1 29 268184938 268184966 2.000000e-03 54.7
61 TraesCS6D01G361400 chr2B 100.000 29 0 0 1 29 596167863 596167835 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G361400 chr6D 452482344 452486884 4540 True 8386.000000 8386 100.000000 1 4541 1 chr6D.!!$R1 4540
1 TraesCS6D01G361400 chr6D 452929922 452931483 1561 True 1051.000000 1051 79.112000 1976 3555 1 chr6D.!!$R2 1579
2 TraesCS6D01G361400 chr6D 452906287 452908750 2463 False 853.000000 1096 79.883500 1055 3542 2 chr6D.!!$F3 2487
3 TraesCS6D01G361400 chr6D 452848802 452849374 572 False 547.000000 547 84.028000 1366 1936 1 chr6D.!!$F2 570
4 TraesCS6D01G361400 chr6A 598153972 598157974 4002 True 2675.500000 3487 93.465500 759 4375 2 chr6A.!!$R3 3616
5 TraesCS6D01G361400 chr6A 598924318 598926722 2404 True 878.000000 987 81.077500 1076 3541 2 chr6A.!!$R5 2465
6 TraesCS6D01G361400 chr6A 598859293 598861844 2551 False 796.500000 965 78.912500 1070 3542 2 chr6A.!!$F3 2472
7 TraesCS6D01G361400 chr6A 598789700 598790837 1137 False 686.000000 686 78.186000 1088 2221 1 chr6A.!!$F1 1133
8 TraesCS6D01G361400 chr6A 598810261 598810964 703 False 266.900000 444 85.614000 1137 1931 2 chr6A.!!$F2 794
9 TraesCS6D01G361400 chr6A 598163018 598163540 522 True 216.500000 305 86.198000 92 768 2 chr6A.!!$R4 676
10 TraesCS6D01G361400 chr6B 687177506 687181383 3877 True 1023.900000 2865 88.923400 22 4049 5 chr6B.!!$R4 4027
11 TraesCS6D01G361400 chr6B 687255239 687257440 2201 False 896.333333 1912 90.045000 1580 3873 3 chr6B.!!$F4 2293
12 TraesCS6D01G361400 chr6B 687873705 687874834 1129 False 804.000000 804 80.120000 1079 2204 1 chr6B.!!$F3 1125
13 TraesCS6D01G361400 chr6B 687954905 687960090 5185 False 582.000000 584 80.197000 1062 1921 2 chr6B.!!$F5 859
14 TraesCS6D01G361400 chr6B 688123987 688127642 3655 True 541.666667 870 83.380333 1087 3555 3 chr6B.!!$R6 2468
15 TraesCS6D01G361400 chr6B 688079675 688080566 891 True 349.500000 562 83.873500 1087 2157 2 chr6B.!!$R5 1070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.315251 GCCAAAGCTTGTGTTCTCCC 59.685 55.000 0.00 0.00 35.50 4.30 F
841 923 0.573987 CAGACGCATATGTCGCAGTG 59.426 55.000 16.12 9.39 43.70 3.66 F
1955 3394 0.605319 TTTTGGGCTAGCCACACGAG 60.605 55.000 34.09 0.00 37.98 4.18 F
2550 4495 1.203523 GAAGAAGAGCTCGAGAAGGCA 59.796 52.381 18.75 0.00 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1806 3235 1.590525 GGTTGCGTCGACACACTGA 60.591 57.895 17.16 0.0 0.00 3.41 R
2550 4495 0.738389 CTGTGGCGAAGTTGTTGGTT 59.262 50.000 0.00 0.0 0.00 3.67 R
3114 5062 0.110823 GCACGACGCCAAAACTGTAG 60.111 55.000 0.00 0.0 32.94 2.74 R
4308 6634 0.032130 TCGCAGATCAATACCGCCTC 59.968 55.000 0.00 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.122227 ACACAAGCAGCCACCAAAAT 58.878 45.000 0.00 0.00 0.00 1.82
52 53 2.659428 AGCAGCCACCAAAATCTATCC 58.341 47.619 0.00 0.00 0.00 2.59
60 61 4.545678 CACCAAAATCTATCCCCATCCAA 58.454 43.478 0.00 0.00 0.00 3.53
70 71 3.582998 TCCCCATCCAACAATGATCTC 57.417 47.619 0.00 0.00 0.00 2.75
77 78 5.007039 CCATCCAACAATGATCTCGTGTTAG 59.993 44.000 8.33 3.50 0.00 2.34
78 79 4.503910 TCCAACAATGATCTCGTGTTAGG 58.496 43.478 8.33 11.07 0.00 2.69
90 91 2.030540 TCGTGTTAGGGTGAACTCTTCG 60.031 50.000 0.00 0.00 0.00 3.79
101 102 2.052157 GAACTCTTCGACGACACCTTG 58.948 52.381 0.00 0.00 0.00 3.61
104 105 2.100252 ACTCTTCGACGACACCTTGAAA 59.900 45.455 0.00 0.00 0.00 2.69
109 110 2.159071 TCGACGACACCTTGAAAAAGGA 60.159 45.455 11.39 0.00 42.62 3.36
110 111 2.610374 CGACGACACCTTGAAAAAGGAA 59.390 45.455 11.39 0.00 42.62 3.36
111 112 3.064271 CGACGACACCTTGAAAAAGGAAA 59.936 43.478 11.39 0.00 42.62 3.13
159 160 2.439883 GAGTACCGACCCTCGCCT 60.440 66.667 0.00 0.00 38.82 5.52
170 171 2.564975 CTCGCCTGCCAAAGCTTG 59.435 61.111 0.00 0.00 40.80 4.01
171 172 2.203337 TCGCCTGCCAAAGCTTGT 60.203 55.556 0.00 0.00 40.80 3.16
172 173 2.049802 CGCCTGCCAAAGCTTGTG 60.050 61.111 0.00 0.45 40.80 3.33
179 180 0.315251 GCCAAAGCTTGTGTTCTCCC 59.685 55.000 0.00 0.00 35.50 4.30
184 185 2.557920 AGCTTGTGTTCTCCCAAGAG 57.442 50.000 3.72 0.00 40.36 2.85
195 196 1.945394 CTCCCAAGAGCATGGATTTCG 59.055 52.381 4.90 0.00 43.54 3.46
209 212 2.288788 ATTTCGGGCCGTCTACGTCC 62.289 60.000 27.32 0.00 36.53 4.79
227 230 5.827666 ACGTCCTTTTGGTTATCTTGTTTG 58.172 37.500 0.00 0.00 41.38 2.93
239 242 8.889717 TGGTTATCTTGTTTGCTAGCTTTATAC 58.110 33.333 17.23 7.21 0.00 1.47
250 253 9.932207 TTTGCTAGCTTTATACTGTGTTTACTA 57.068 29.630 17.23 0.00 0.00 1.82
306 310 4.730949 TGTGATAGCTAGGGTGTTACAC 57.269 45.455 6.99 6.99 0.00 2.90
348 352 7.728847 AAACTTGCAAATCCCTAAAATCAAC 57.271 32.000 0.00 0.00 0.00 3.18
426 463 1.466558 GCTAAGCCAGAGTTGCTCAAC 59.533 52.381 4.67 4.67 38.34 3.18
438 475 4.186241 GTTGCTCAACTTTTTGCATGTG 57.814 40.909 5.56 0.00 38.25 3.21
524 561 9.582648 ACACTCTTTTATATTTACTTTGGGTGT 57.417 29.630 0.00 0.00 0.00 4.16
525 562 9.840427 CACTCTTTTATATTTACTTTGGGTGTG 57.160 33.333 0.00 0.00 0.00 3.82
526 563 9.020731 ACTCTTTTATATTTACTTTGGGTGTGG 57.979 33.333 0.00 0.00 0.00 4.17
527 564 7.832769 TCTTTTATATTTACTTTGGGTGTGGC 58.167 34.615 0.00 0.00 0.00 5.01
528 565 7.672239 TCTTTTATATTTACTTTGGGTGTGGCT 59.328 33.333 0.00 0.00 0.00 4.75
529 566 8.880991 TTTTATATTTACTTTGGGTGTGGCTA 57.119 30.769 0.00 0.00 0.00 3.93
530 567 8.880991 TTTATATTTACTTTGGGTGTGGCTAA 57.119 30.769 0.00 0.00 0.00 3.09
531 568 8.880991 TTATATTTACTTTGGGTGTGGCTAAA 57.119 30.769 0.00 0.00 0.00 1.85
532 569 7.971368 ATATTTACTTTGGGTGTGGCTAAAT 57.029 32.000 0.00 0.00 0.00 1.40
533 570 5.715434 TTTACTTTGGGTGTGGCTAAATC 57.285 39.130 0.00 0.00 0.00 2.17
534 571 3.525800 ACTTTGGGTGTGGCTAAATCT 57.474 42.857 0.00 0.00 0.00 2.40
535 572 3.844640 ACTTTGGGTGTGGCTAAATCTT 58.155 40.909 0.00 0.00 0.00 2.40
536 573 4.993028 ACTTTGGGTGTGGCTAAATCTTA 58.007 39.130 0.00 0.00 0.00 2.10
537 574 5.010282 ACTTTGGGTGTGGCTAAATCTTAG 58.990 41.667 0.00 0.00 0.00 2.18
538 575 4.650972 TTGGGTGTGGCTAAATCTTAGT 57.349 40.909 0.00 0.00 0.00 2.24
539 576 4.216411 TGGGTGTGGCTAAATCTTAGTC 57.784 45.455 0.00 0.00 0.00 2.59
540 577 3.195661 GGGTGTGGCTAAATCTTAGTCG 58.804 50.000 0.00 0.00 0.00 4.18
541 578 3.118884 GGGTGTGGCTAAATCTTAGTCGA 60.119 47.826 0.00 0.00 0.00 4.20
542 579 3.864003 GGTGTGGCTAAATCTTAGTCGAC 59.136 47.826 7.70 7.70 0.00 4.20
543 580 4.381718 GGTGTGGCTAAATCTTAGTCGACT 60.382 45.833 23.66 23.66 0.00 4.18
544 581 5.163581 GGTGTGGCTAAATCTTAGTCGACTA 60.164 44.000 21.25 21.25 0.00 2.59
545 582 6.327934 GTGTGGCTAAATCTTAGTCGACTAA 58.672 40.000 30.65 30.65 36.99 2.24
562 599 8.516811 GTCGACTAAGACTTAACAAAATCTCA 57.483 34.615 8.70 0.00 38.09 3.27
563 600 8.640291 GTCGACTAAGACTTAACAAAATCTCAG 58.360 37.037 8.70 0.00 38.09 3.35
564 601 8.358148 TCGACTAAGACTTAACAAAATCTCAGT 58.642 33.333 0.00 0.00 0.00 3.41
565 602 8.640291 CGACTAAGACTTAACAAAATCTCAGTC 58.360 37.037 0.00 0.00 34.39 3.51
566 603 9.477484 GACTAAGACTTAACAAAATCTCAGTCA 57.523 33.333 0.00 0.00 36.73 3.41
567 604 9.832445 ACTAAGACTTAACAAAATCTCAGTCAA 57.168 29.630 0.00 0.00 34.33 3.18
569 606 8.738645 AAGACTTAACAAAATCTCAGTCAAGT 57.261 30.769 0.00 0.00 34.33 3.16
570 607 8.147642 AGACTTAACAAAATCTCAGTCAAGTG 57.852 34.615 0.00 0.00 34.33 3.16
571 608 7.987458 AGACTTAACAAAATCTCAGTCAAGTGA 59.013 33.333 0.00 0.00 34.33 3.41
572 609 7.920738 ACTTAACAAAATCTCAGTCAAGTGAC 58.079 34.615 3.12 3.12 45.08 3.67
626 663 9.911788 AAATACACAGATCTCCATGTAAAATCT 57.088 29.630 12.66 0.00 31.65 2.40
627 664 9.553064 AATACACAGATCTCCATGTAAAATCTC 57.447 33.333 12.66 0.00 31.65 2.75
628 665 6.950842 ACACAGATCTCCATGTAAAATCTCA 58.049 36.000 0.00 0.00 0.00 3.27
629 666 6.820656 ACACAGATCTCCATGTAAAATCTCAC 59.179 38.462 0.00 0.00 0.00 3.51
630 667 6.019237 CACAGATCTCCATGTAAAATCTCACG 60.019 42.308 0.00 0.00 0.00 4.35
631 668 5.464722 CAGATCTCCATGTAAAATCTCACGG 59.535 44.000 0.00 0.00 0.00 4.94
632 669 5.363868 AGATCTCCATGTAAAATCTCACGGA 59.636 40.000 0.00 0.00 0.00 4.69
633 670 5.614324 TCTCCATGTAAAATCTCACGGAT 57.386 39.130 0.00 0.00 35.97 4.18
634 671 6.724893 TCTCCATGTAAAATCTCACGGATA 57.275 37.500 0.00 0.00 33.71 2.59
635 672 7.303182 TCTCCATGTAAAATCTCACGGATAT 57.697 36.000 0.00 0.00 33.71 1.63
636 673 8.417273 TCTCCATGTAAAATCTCACGGATATA 57.583 34.615 0.00 0.00 33.71 0.86
637 674 8.866093 TCTCCATGTAAAATCTCACGGATATAA 58.134 33.333 0.00 0.00 33.71 0.98
638 675 8.827177 TCCATGTAAAATCTCACGGATATAAC 57.173 34.615 0.00 0.00 33.71 1.89
639 676 8.425703 TCCATGTAAAATCTCACGGATATAACA 58.574 33.333 0.00 0.00 33.71 2.41
640 677 9.219603 CCATGTAAAATCTCACGGATATAACAT 57.780 33.333 0.00 0.00 33.81 2.71
642 679 8.515473 TGTAAAATCTCACGGATATAACATCG 57.485 34.615 0.00 0.00 33.71 3.84
643 680 8.139350 TGTAAAATCTCACGGATATAACATCGT 58.861 33.333 0.00 0.00 33.71 3.73
644 681 8.975439 GTAAAATCTCACGGATATAACATCGTT 58.025 33.333 0.00 0.00 33.71 3.85
646 683 9.537192 AAAATCTCACGGATATAACATCGTTAA 57.463 29.630 0.00 0.00 33.71 2.01
647 684 8.744008 AATCTCACGGATATAACATCGTTAAG 57.256 34.615 0.00 0.00 33.71 1.85
648 685 7.268199 TCTCACGGATATAACATCGTTAAGT 57.732 36.000 0.00 0.00 33.31 2.24
649 686 7.358066 TCTCACGGATATAACATCGTTAAGTC 58.642 38.462 0.00 0.00 33.31 3.01
650 687 7.228108 TCTCACGGATATAACATCGTTAAGTCT 59.772 37.037 0.00 0.00 33.31 3.24
651 688 7.358066 TCACGGATATAACATCGTTAAGTCTC 58.642 38.462 0.00 0.00 33.31 3.36
652 689 6.302549 CACGGATATAACATCGTTAAGTCTCG 59.697 42.308 0.00 0.00 33.31 4.04
653 690 5.793952 CGGATATAACATCGTTAAGTCTCGG 59.206 44.000 0.00 0.00 0.00 4.63
654 691 6.567321 CGGATATAACATCGTTAAGTCTCGGT 60.567 42.308 0.00 0.00 0.00 4.69
655 692 6.800892 GGATATAACATCGTTAAGTCTCGGTC 59.199 42.308 0.00 0.00 0.00 4.79
656 693 2.539346 ACATCGTTAAGTCTCGGTCG 57.461 50.000 0.00 0.00 0.00 4.79
657 694 2.079158 ACATCGTTAAGTCTCGGTCGA 58.921 47.619 0.00 0.00 0.00 4.20
658 695 2.159599 ACATCGTTAAGTCTCGGTCGAC 60.160 50.000 7.13 7.13 0.00 4.20
659 696 1.800805 TCGTTAAGTCTCGGTCGACT 58.199 50.000 16.46 0.00 45.73 4.18
660 697 1.462283 TCGTTAAGTCTCGGTCGACTG 59.538 52.381 18.66 18.66 43.14 3.51
661 698 1.462283 CGTTAAGTCTCGGTCGACTGA 59.538 52.381 25.02 25.02 43.14 3.41
673 710 6.057627 TCGGTCGACTGAGATTTAGTAATC 57.942 41.667 23.11 0.00 40.42 1.75
674 711 5.008415 TCGGTCGACTGAGATTTAGTAATCC 59.992 44.000 23.11 0.00 40.91 3.01
675 712 5.530712 GGTCGACTGAGATTTAGTAATCCC 58.469 45.833 16.46 0.00 40.91 3.85
676 713 5.213675 GTCGACTGAGATTTAGTAATCCCG 58.786 45.833 8.70 0.00 40.91 5.14
677 714 5.008415 GTCGACTGAGATTTAGTAATCCCGA 59.992 44.000 8.70 0.00 40.91 5.14
678 715 5.768662 TCGACTGAGATTTAGTAATCCCGAT 59.231 40.000 0.00 0.00 40.91 4.18
679 716 6.264744 TCGACTGAGATTTAGTAATCCCGATT 59.735 38.462 0.00 0.00 40.91 3.34
680 717 6.924060 CGACTGAGATTTAGTAATCCCGATTT 59.076 38.462 0.00 0.00 40.91 2.17
681 718 8.080417 CGACTGAGATTTAGTAATCCCGATTTA 58.920 37.037 0.00 0.00 40.91 1.40
682 719 9.194271 GACTGAGATTTAGTAATCCCGATTTAC 57.806 37.037 0.00 0.00 40.91 2.01
683 720 8.925338 ACTGAGATTTAGTAATCCCGATTTACT 58.075 33.333 0.00 8.84 40.91 2.24
684 721 9.765795 CTGAGATTTAGTAATCCCGATTTACTT 57.234 33.333 9.04 0.00 40.91 2.24
718 789 4.753516 TGTTTTTCCTGTGAGAGACTCA 57.246 40.909 5.02 0.00 38.25 3.41
743 814 2.440409 AGTGTTTGCATGAAGGCCTAG 58.560 47.619 5.16 0.00 0.00 3.02
744 815 2.162681 GTGTTTGCATGAAGGCCTAGT 58.837 47.619 5.16 0.00 0.00 2.57
745 816 2.558359 GTGTTTGCATGAAGGCCTAGTT 59.442 45.455 5.16 0.00 0.00 2.24
746 817 3.756434 GTGTTTGCATGAAGGCCTAGTTA 59.244 43.478 5.16 0.00 0.00 2.24
747 818 3.756434 TGTTTGCATGAAGGCCTAGTTAC 59.244 43.478 5.16 0.00 0.00 2.50
748 819 3.712016 TTGCATGAAGGCCTAGTTACA 57.288 42.857 5.16 0.00 0.00 2.41
749 820 3.931907 TGCATGAAGGCCTAGTTACAT 57.068 42.857 5.16 4.58 0.00 2.29
750 821 3.544684 TGCATGAAGGCCTAGTTACATG 58.455 45.455 21.47 21.47 38.33 3.21
751 822 3.199727 TGCATGAAGGCCTAGTTACATGA 59.800 43.478 26.03 15.58 37.77 3.07
752 823 4.199310 GCATGAAGGCCTAGTTACATGAA 58.801 43.478 26.03 0.00 37.77 2.57
753 824 4.823989 GCATGAAGGCCTAGTTACATGAAT 59.176 41.667 26.03 3.51 37.77 2.57
841 923 0.573987 CAGACGCATATGTCGCAGTG 59.426 55.000 16.12 9.39 43.70 3.66
869 951 5.519722 GTGTTCAATTTCTCAACGACCATT 58.480 37.500 0.00 0.00 0.00 3.16
871 953 4.764679 TCAATTTCTCAACGACCATTGG 57.235 40.909 0.00 0.00 0.00 3.16
872 954 3.057596 TCAATTTCTCAACGACCATTGGC 60.058 43.478 1.54 0.00 0.00 4.52
873 955 1.974265 TTTCTCAACGACCATTGGCA 58.026 45.000 1.54 0.00 0.00 4.92
875 957 2.198827 TCTCAACGACCATTGGCATT 57.801 45.000 1.54 0.00 0.00 3.56
876 958 2.513753 TCTCAACGACCATTGGCATTT 58.486 42.857 1.54 0.00 0.00 2.32
881 968 4.335315 TCAACGACCATTGGCATTTAGATC 59.665 41.667 1.54 0.00 0.00 2.75
886 973 2.960384 CCATTGGCATTTAGATCCTGCA 59.040 45.455 8.76 0.00 37.64 4.41
965 1056 3.643320 CAGTCCACCTATATCCAAGCAGA 59.357 47.826 0.00 0.00 0.00 4.26
966 1057 3.900601 AGTCCACCTATATCCAAGCAGAG 59.099 47.826 0.00 0.00 0.00 3.35
967 1058 3.643792 GTCCACCTATATCCAAGCAGAGT 59.356 47.826 0.00 0.00 0.00 3.24
968 1059 3.898123 TCCACCTATATCCAAGCAGAGTC 59.102 47.826 0.00 0.00 0.00 3.36
969 1060 3.900601 CCACCTATATCCAAGCAGAGTCT 59.099 47.826 0.00 0.00 0.00 3.24
970 1061 4.021544 CCACCTATATCCAAGCAGAGTCTC 60.022 50.000 0.00 0.00 0.00 3.36
972 1063 4.155709 CCTATATCCAAGCAGAGTCTCCA 58.844 47.826 0.00 0.00 0.00 3.86
973 1064 4.220382 CCTATATCCAAGCAGAGTCTCCAG 59.780 50.000 0.00 0.00 0.00 3.86
985 1076 3.016736 GAGTCTCCAGTCCAGAGAAGAG 58.983 54.545 0.00 0.00 41.88 2.85
1008 1099 3.924073 CACACACATCAAGAATGGCATTG 59.076 43.478 19.07 5.09 39.90 2.82
1134 1225 1.154488 CGGCAACATCACCGTTTCG 60.154 57.895 0.00 0.00 44.46 3.46
1323 2707 3.241530 TGCTTCAGCTCCACCGGT 61.242 61.111 0.00 0.00 42.66 5.28
1719 3145 4.699522 GACTTCGCCGTGCCCCTT 62.700 66.667 0.00 0.00 0.00 3.95
1812 3241 3.521529 GAGCACGGGCAGTCAGTGT 62.522 63.158 14.57 0.00 42.33 3.55
1930 3369 4.696479 ACTGATTTCTGACACCAACTCT 57.304 40.909 0.00 0.00 0.00 3.24
1955 3394 0.605319 TTTTGGGCTAGCCACACGAG 60.605 55.000 34.09 0.00 37.98 4.18
2222 4038 2.660189 AAACCGTCATAGGTACACCG 57.340 50.000 0.00 0.00 45.21 4.94
2224 4040 2.418368 ACCGTCATAGGTACACCGTA 57.582 50.000 0.00 0.00 43.89 4.02
2271 4174 4.067192 TCATGCAACATATTCCATCTCCG 58.933 43.478 0.00 0.00 0.00 4.63
2275 4178 3.798889 GCAACATATTCCATCTCCGTCGA 60.799 47.826 0.00 0.00 0.00 4.20
2284 4187 2.464865 CATCTCCGTCGATGGTTCTTC 58.535 52.381 22.88 0.00 37.67 2.87
2294 4231 4.394920 GTCGATGGTTCTTCCTGCAATTTA 59.605 41.667 0.00 0.00 37.07 1.40
2550 4495 1.203523 GAAGAAGAGCTCGAGAAGGCA 59.796 52.381 18.75 0.00 0.00 4.75
3114 5062 0.040336 TGACAGACAAGAGCGACGTC 60.040 55.000 5.18 5.18 0.00 4.34
3180 5132 3.397613 GATCTGCTTCAGCGGGCCT 62.398 63.158 0.84 0.00 46.99 5.19
3767 6048 8.492748 GTTTTTCGTTCCTTTTCTTGTTTCTTT 58.507 29.630 0.00 0.00 0.00 2.52
3804 6086 9.620259 ATTGTTTTCTGCCATTTTACCTTTTTA 57.380 25.926 0.00 0.00 0.00 1.52
3891 6176 1.468914 GCCTCTGTCGAATGTTTTCCC 59.531 52.381 0.00 0.00 0.00 3.97
3942 6227 8.451908 AATAAAAACAAGACACTGCTTCTACT 57.548 30.769 0.00 0.00 0.00 2.57
3943 6228 9.555727 AATAAAAACAAGACACTGCTTCTACTA 57.444 29.630 0.00 0.00 0.00 1.82
4057 6357 2.031683 AGAGAAGCAAACAAAACCGTCG 59.968 45.455 0.00 0.00 0.00 5.12
4074 6374 3.845775 CCGTCGCATCATTGTTAACAAAG 59.154 43.478 23.97 19.63 39.55 2.77
4101 6401 7.451731 ACCTATAATTGTCTTTCCCTGATGA 57.548 36.000 0.00 0.00 0.00 2.92
4164 6490 1.266718 GAAAGGCAAGTTCATCACGCA 59.733 47.619 0.00 0.00 0.00 5.24
4182 6508 1.530419 ATGTGCCGGGTTTCAAGCA 60.530 52.632 2.18 0.00 0.00 3.91
4209 6535 2.615227 CTTCCCCCGAATGCTCCCTG 62.615 65.000 0.00 0.00 0.00 4.45
4210 6536 3.089874 CCCCCGAATGCTCCCTGA 61.090 66.667 0.00 0.00 0.00 3.86
4211 6537 2.190578 CCCCGAATGCTCCCTGAC 59.809 66.667 0.00 0.00 0.00 3.51
4227 6553 3.185330 CCTGACAAGAGATCACATCACG 58.815 50.000 0.00 0.00 0.00 4.35
4240 6566 2.167219 ATCACGGAGCGTTCATGCG 61.167 57.895 0.53 0.00 38.32 4.73
4286 6612 2.777832 AGGTCTGTTCAAGGATGCTC 57.222 50.000 0.00 0.00 0.00 4.26
4315 6641 2.851263 TGTTCAATAAGTGAGGCGGT 57.149 45.000 0.00 0.00 37.61 5.68
4342 6668 8.766000 TTGATCTGCGATGTTTAAGTTACTAA 57.234 30.769 0.00 0.00 0.00 2.24
4349 6675 8.252417 TGCGATGTTTAAGTTACTAAGTATGGA 58.748 33.333 0.00 0.00 0.00 3.41
4350 6676 8.538039 GCGATGTTTAAGTTACTAAGTATGGAC 58.462 37.037 0.00 0.00 0.00 4.02
4356 6682 4.021916 AGTTACTAAGTATGGACACGCCT 58.978 43.478 0.00 0.00 37.63 5.52
4357 6683 5.195940 AGTTACTAAGTATGGACACGCCTA 58.804 41.667 0.00 0.00 37.63 3.93
4368 6694 3.187700 GGACACGCCTATAAGTTCAGTG 58.812 50.000 0.00 0.00 0.00 3.66
4371 6697 4.433615 ACACGCCTATAAGTTCAGTGATG 58.566 43.478 0.00 0.00 33.00 3.07
4375 6701 4.982916 CGCCTATAAGTTCAGTGATGGTAC 59.017 45.833 0.00 0.00 0.00 3.34
4376 6702 5.298347 GCCTATAAGTTCAGTGATGGTACC 58.702 45.833 4.43 4.43 0.00 3.34
4377 6703 5.529791 CCTATAAGTTCAGTGATGGTACCG 58.470 45.833 7.57 0.00 0.00 4.02
4378 6704 5.301045 CCTATAAGTTCAGTGATGGTACCGA 59.699 44.000 7.57 0.00 0.00 4.69
4379 6705 5.670792 ATAAGTTCAGTGATGGTACCGAA 57.329 39.130 7.57 0.22 0.00 4.30
4380 6706 4.345859 AAGTTCAGTGATGGTACCGAAA 57.654 40.909 7.57 0.00 0.00 3.46
4381 6707 4.345859 AGTTCAGTGATGGTACCGAAAA 57.654 40.909 7.57 0.00 0.00 2.29
4382 6708 4.710324 AGTTCAGTGATGGTACCGAAAAA 58.290 39.130 7.57 0.00 0.00 1.94
4383 6709 4.755123 AGTTCAGTGATGGTACCGAAAAAG 59.245 41.667 7.57 0.00 0.00 2.27
4384 6710 3.670625 TCAGTGATGGTACCGAAAAAGG 58.329 45.455 7.57 0.00 37.30 3.11
4386 6712 3.818773 CAGTGATGGTACCGAAAAAGGTT 59.181 43.478 7.57 0.00 43.00 3.50
4387 6713 4.277423 CAGTGATGGTACCGAAAAAGGTTT 59.723 41.667 7.57 0.00 43.00 3.27
4388 6714 4.891168 AGTGATGGTACCGAAAAAGGTTTT 59.109 37.500 7.57 0.00 43.00 2.43
4389 6715 5.009310 AGTGATGGTACCGAAAAAGGTTTTC 59.991 40.000 7.57 3.82 43.00 2.29
4390 6716 4.278919 TGATGGTACCGAAAAAGGTTTTCC 59.721 41.667 7.57 0.00 43.00 3.13
4391 6717 2.957680 TGGTACCGAAAAAGGTTTTCCC 59.042 45.455 7.57 4.42 43.00 3.97
4392 6718 2.297033 GGTACCGAAAAAGGTTTTCCCC 59.703 50.000 0.00 1.05 43.00 4.81
4393 6719 1.416243 ACCGAAAAAGGTTTTCCCCC 58.584 50.000 7.65 0.00 43.00 5.40
4394 6720 0.315886 CCGAAAAAGGTTTTCCCCCG 59.684 55.000 7.65 0.00 41.86 5.73
4395 6721 0.319211 CGAAAAAGGTTTTCCCCCGC 60.319 55.000 7.65 0.00 41.86 6.13
4398 6724 1.502690 AAAAGGTTTTCCCCCGCTTT 58.497 45.000 0.00 0.00 41.86 3.51
4401 6727 0.479378 AGGTTTTCCCCCGCTTTGTA 59.521 50.000 0.00 0.00 41.86 2.41
4409 6735 2.107366 CCCCCGCTTTGTATTCCAAAT 58.893 47.619 0.00 0.00 42.02 2.32
4410 6736 2.100749 CCCCCGCTTTGTATTCCAAATC 59.899 50.000 0.00 0.00 42.02 2.17
4412 6738 3.194542 CCCCGCTTTGTATTCCAAATCAA 59.805 43.478 0.00 0.00 42.02 2.57
4414 6740 5.043248 CCCGCTTTGTATTCCAAATCAATC 58.957 41.667 0.00 0.00 42.02 2.67
4416 6742 6.098679 CCGCTTTGTATTCCAAATCAATCAA 58.901 36.000 0.00 0.00 42.02 2.57
4419 6745 7.410728 CGCTTTGTATTCCAAATCAATCAACAC 60.411 37.037 0.00 0.00 42.02 3.32
4421 6747 5.948588 TGTATTCCAAATCAATCAACACCG 58.051 37.500 0.00 0.00 0.00 4.94
4423 6749 5.920193 ATTCCAAATCAATCAACACCGAT 57.080 34.783 0.00 0.00 0.00 4.18
4429 6755 6.128035 CCAAATCAATCAACACCGATACAAGA 60.128 38.462 0.00 0.00 0.00 3.02
4430 6756 7.304735 CAAATCAATCAACACCGATACAAGAA 58.695 34.615 0.00 0.00 0.00 2.52
4431 6757 7.447374 AATCAATCAACACCGATACAAGAAA 57.553 32.000 0.00 0.00 0.00 2.52
4432 6758 6.236017 TCAATCAACACCGATACAAGAAAC 57.764 37.500 0.00 0.00 0.00 2.78
4433 6759 4.921470 ATCAACACCGATACAAGAAACG 57.079 40.909 0.00 0.00 0.00 3.60
4436 6762 2.066262 ACACCGATACAAGAAACGCTG 58.934 47.619 0.00 0.00 0.00 5.18
4437 6763 1.393539 CACCGATACAAGAAACGCTGG 59.606 52.381 0.00 0.00 0.00 4.85
4438 6764 1.006832 CCGATACAAGAAACGCTGGG 58.993 55.000 0.00 0.00 0.00 4.45
4439 6765 1.006832 CGATACAAGAAACGCTGGGG 58.993 55.000 0.00 0.00 0.00 4.96
4440 6766 0.733150 GATACAAGAAACGCTGGGGC 59.267 55.000 0.00 0.00 0.00 5.80
4458 7627 2.256591 CGAGCAGCACAACAAGCCT 61.257 57.895 0.00 0.00 0.00 4.58
4460 7629 1.238439 GAGCAGCACAACAAGCCTAA 58.762 50.000 0.00 0.00 0.00 2.69
4485 7654 4.856115 AAAGAAACAAATGCCAACAACG 57.144 36.364 0.00 0.00 0.00 4.10
4502 7671 4.043200 GGCAGCCCGACAAAGTGC 62.043 66.667 0.00 0.00 0.00 4.40
4503 7672 4.389576 GCAGCCCGACAAAGTGCG 62.390 66.667 0.00 0.00 0.00 5.34
4510 7679 1.787847 CGACAAAGTGCGGATGACC 59.212 57.895 0.00 0.00 0.00 4.02
4511 7680 1.635663 CGACAAAGTGCGGATGACCC 61.636 60.000 0.00 0.00 0.00 4.46
4533 7702 1.077212 ACCGCTACGCCCTCTAGAA 60.077 57.895 0.00 0.00 0.00 2.10
4534 7703 0.682209 ACCGCTACGCCCTCTAGAAA 60.682 55.000 0.00 0.00 0.00 2.52
4537 7706 0.737219 GCTACGCCCTCTAGAAACGA 59.263 55.000 13.73 0.46 0.00 3.85
4538 7707 1.133790 GCTACGCCCTCTAGAAACGAA 59.866 52.381 13.73 0.00 0.00 3.85
4540 7709 0.963962 ACGCCCTCTAGAAACGAACA 59.036 50.000 13.73 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.043227 GTGAGGGAGTCCTGGATTAGG 58.957 57.143 9.58 0.00 45.05 2.69
2 3 2.043227 GGTGAGGGAGTCCTGGATTAG 58.957 57.143 9.58 0.00 45.05 1.73
3 4 1.688311 CGGTGAGGGAGTCCTGGATTA 60.688 57.143 9.58 0.00 45.05 1.75
4 5 0.978146 CGGTGAGGGAGTCCTGGATT 60.978 60.000 9.58 0.00 45.05 3.01
5 6 1.381872 CGGTGAGGGAGTCCTGGAT 60.382 63.158 9.58 0.00 45.05 3.41
6 7 2.037367 CGGTGAGGGAGTCCTGGA 59.963 66.667 9.58 0.00 45.05 3.86
7 8 3.077556 CCGGTGAGGGAGTCCTGG 61.078 72.222 9.58 0.00 45.05 4.45
11 12 4.083862 GTGGCCGGTGAGGGAGTC 62.084 72.222 1.90 0.00 41.48 3.36
12 13 4.954118 TGTGGCCGGTGAGGGAGT 62.954 66.667 1.90 0.00 41.48 3.85
13 14 4.394712 GTGTGGCCGGTGAGGGAG 62.395 72.222 1.90 0.00 41.48 4.30
15 16 4.263572 TTGTGTGGCCGGTGAGGG 62.264 66.667 1.90 0.00 41.48 4.30
16 17 2.669569 CTTGTGTGGCCGGTGAGG 60.670 66.667 1.90 0.00 44.97 3.86
17 18 3.357079 GCTTGTGTGGCCGGTGAG 61.357 66.667 1.90 0.00 0.00 3.51
18 19 4.182433 TGCTTGTGTGGCCGGTGA 62.182 61.111 1.90 0.00 0.00 4.02
19 20 3.663176 CTGCTTGTGTGGCCGGTG 61.663 66.667 1.90 0.00 0.00 4.94
26 27 0.175302 TTTTGGTGGCTGCTTGTGTG 59.825 50.000 0.00 0.00 0.00 3.82
27 28 1.069049 GATTTTGGTGGCTGCTTGTGT 59.931 47.619 0.00 0.00 0.00 3.72
31 32 3.026694 GGATAGATTTTGGTGGCTGCTT 58.973 45.455 0.00 0.00 0.00 3.91
46 47 4.915809 AGATCATTGTTGGATGGGGATAGA 59.084 41.667 0.00 0.00 0.00 1.98
52 53 2.615447 CACGAGATCATTGTTGGATGGG 59.385 50.000 0.00 0.00 0.00 4.00
60 61 3.513912 TCACCCTAACACGAGATCATTGT 59.486 43.478 0.00 0.00 0.00 2.71
70 71 2.030540 TCGAAGAGTTCACCCTAACACG 60.031 50.000 0.00 0.00 0.00 4.49
77 78 0.313043 TGTCGTCGAAGAGTTCACCC 59.687 55.000 0.00 0.00 36.95 4.61
78 79 1.406447 GTGTCGTCGAAGAGTTCACC 58.594 55.000 0.00 0.00 36.95 4.02
117 118 1.303317 GAAGGCGACCATGGGTGTT 60.303 57.895 18.09 1.58 35.25 3.32
141 142 2.439883 GGCGAGGGTCGGTACTCT 60.440 66.667 0.00 0.00 39.97 3.24
143 144 2.754658 CAGGCGAGGGTCGGTACT 60.755 66.667 0.00 0.00 40.84 2.73
159 160 1.032014 GGAGAACACAAGCTTTGGCA 58.968 50.000 0.00 0.00 41.70 4.92
170 171 1.003580 TCCATGCTCTTGGGAGAACAC 59.996 52.381 2.51 0.00 41.86 3.32
171 172 1.361204 TCCATGCTCTTGGGAGAACA 58.639 50.000 2.51 0.00 41.86 3.18
172 173 2.725221 ATCCATGCTCTTGGGAGAAC 57.275 50.000 2.51 0.00 41.86 3.01
179 180 0.383231 GCCCGAAATCCATGCTCTTG 59.617 55.000 0.00 0.00 0.00 3.02
184 185 2.828549 ACGGCCCGAAATCCATGC 60.829 61.111 11.71 0.00 0.00 4.06
209 212 6.681777 AGCTAGCAAACAAGATAACCAAAAG 58.318 36.000 18.83 0.00 0.00 2.27
227 230 9.583765 AAGTAGTAAACACAGTATAAAGCTAGC 57.416 33.333 6.62 6.62 0.00 3.42
239 242 5.696724 ACAAGCTAGCAAGTAGTAAACACAG 59.303 40.000 18.83 0.00 0.00 3.66
250 253 4.273480 CACACACTAAACAAGCTAGCAAGT 59.727 41.667 18.83 11.93 0.00 3.16
306 310 7.491372 TGCAAGTTTTCTATAGATGTAACCGAG 59.509 37.037 2.58 3.82 0.00 4.63
377 413 4.154375 GTGACTAGGCCAAAAGAGTAAAGC 59.846 45.833 5.01 0.00 0.00 3.51
378 414 5.179555 GTGTGACTAGGCCAAAAGAGTAAAG 59.820 44.000 5.01 0.00 0.00 1.85
434 471 3.936564 ACAAACCACAAAAGTTGCACAT 58.063 36.364 0.00 0.00 0.00 3.21
438 475 7.764695 AAAGTATACAAACCACAAAAGTTGC 57.235 32.000 5.50 0.00 0.00 4.17
501 538 7.973944 GCCACACCCAAAGTAAATATAAAAGAG 59.026 37.037 0.00 0.00 0.00 2.85
506 543 8.880991 TTTAGCCACACCCAAAGTAAATATAA 57.119 30.769 0.00 0.00 0.00 0.98
519 556 3.118884 TCGACTAAGATTTAGCCACACCC 60.119 47.826 0.00 0.00 0.00 4.61
521 558 4.745649 AGTCGACTAAGATTTAGCCACAC 58.254 43.478 18.46 0.00 0.00 3.82
522 559 6.519679 TTAGTCGACTAAGATTTAGCCACA 57.480 37.500 29.57 7.24 33.83 4.17
535 572 9.837525 GAGATTTTGTTAAGTCTTAGTCGACTA 57.162 33.333 21.25 21.25 43.14 2.59
536 573 8.358148 TGAGATTTTGTTAAGTCTTAGTCGACT 58.642 33.333 23.66 23.66 45.73 4.18
537 574 8.516811 TGAGATTTTGTTAAGTCTTAGTCGAC 57.483 34.615 7.70 7.70 31.25 4.20
538 575 8.358148 ACTGAGATTTTGTTAAGTCTTAGTCGA 58.642 33.333 0.00 0.00 40.54 4.20
539 576 8.522178 ACTGAGATTTTGTTAAGTCTTAGTCG 57.478 34.615 0.00 0.00 40.54 4.18
541 578 9.832445 TTGACTGAGATTTTGTTAAGTCTTAGT 57.168 29.630 7.30 7.30 44.29 2.24
543 580 9.832445 ACTTGACTGAGATTTTGTTAAGTCTTA 57.168 29.630 0.00 0.00 36.31 2.10
544 581 8.616076 CACTTGACTGAGATTTTGTTAAGTCTT 58.384 33.333 0.00 0.00 38.07 3.01
545 582 7.987458 TCACTTGACTGAGATTTTGTTAAGTCT 59.013 33.333 0.00 0.00 38.07 3.24
546 583 8.064814 GTCACTTGACTGAGATTTTGTTAAGTC 58.935 37.037 1.92 0.00 38.07 3.01
547 584 7.552687 TGTCACTTGACTGAGATTTTGTTAAGT 59.447 33.333 10.63 0.00 44.99 2.24
548 585 7.919690 TGTCACTTGACTGAGATTTTGTTAAG 58.080 34.615 10.63 0.00 44.99 1.85
549 586 7.857734 TGTCACTTGACTGAGATTTTGTTAA 57.142 32.000 10.63 0.00 44.99 2.01
550 587 7.857734 TTGTCACTTGACTGAGATTTTGTTA 57.142 32.000 10.63 0.00 44.99 2.41
551 588 6.757897 TTGTCACTTGACTGAGATTTTGTT 57.242 33.333 10.63 0.00 44.99 2.83
552 589 6.757897 TTTGTCACTTGACTGAGATTTTGT 57.242 33.333 10.63 0.00 44.99 2.83
553 590 7.028962 TGTTTTGTCACTTGACTGAGATTTTG 58.971 34.615 10.63 0.00 44.99 2.44
554 591 7.156876 TGTTTTGTCACTTGACTGAGATTTT 57.843 32.000 10.63 0.00 44.99 1.82
555 592 6.757897 TGTTTTGTCACTTGACTGAGATTT 57.242 33.333 10.63 0.00 44.99 2.17
556 593 6.949352 ATGTTTTGTCACTTGACTGAGATT 57.051 33.333 10.63 0.00 44.99 2.40
557 594 9.725019 TTATATGTTTTGTCACTTGACTGAGAT 57.275 29.630 10.63 3.83 44.99 2.75
558 595 9.554395 TTTATATGTTTTGTCACTTGACTGAGA 57.446 29.630 10.63 0.00 44.99 3.27
600 637 9.911788 AGATTTTACATGGAGATCTGTGTATTT 57.088 29.630 0.00 0.00 0.00 1.40
601 638 9.553064 GAGATTTTACATGGAGATCTGTGTATT 57.447 33.333 0.00 0.00 0.00 1.89
602 639 8.708378 TGAGATTTTACATGGAGATCTGTGTAT 58.292 33.333 0.00 0.00 0.00 2.29
603 640 7.981789 GTGAGATTTTACATGGAGATCTGTGTA 59.018 37.037 0.00 4.06 0.00 2.90
604 641 6.820656 GTGAGATTTTACATGGAGATCTGTGT 59.179 38.462 0.00 5.10 0.00 3.72
605 642 6.019237 CGTGAGATTTTACATGGAGATCTGTG 60.019 42.308 0.00 0.00 0.00 3.66
606 643 6.045318 CGTGAGATTTTACATGGAGATCTGT 58.955 40.000 0.00 0.00 0.00 3.41
607 644 5.464722 CCGTGAGATTTTACATGGAGATCTG 59.535 44.000 0.00 0.00 43.47 2.90
608 645 5.363868 TCCGTGAGATTTTACATGGAGATCT 59.636 40.000 0.00 0.00 44.15 2.75
609 646 5.601662 TCCGTGAGATTTTACATGGAGATC 58.398 41.667 0.00 0.00 44.15 2.75
610 647 5.614324 TCCGTGAGATTTTACATGGAGAT 57.386 39.130 0.00 0.00 44.15 2.75
614 651 8.601845 TGTTATATCCGTGAGATTTTACATGG 57.398 34.615 0.00 0.00 42.52 3.66
616 653 9.140286 CGATGTTATATCCGTGAGATTTTACAT 57.860 33.333 0.00 0.00 38.24 2.29
617 654 8.139350 ACGATGTTATATCCGTGAGATTTTACA 58.861 33.333 0.00 0.00 36.33 2.41
618 655 8.516811 ACGATGTTATATCCGTGAGATTTTAC 57.483 34.615 0.00 0.00 36.33 2.01
620 657 9.537192 TTAACGATGTTATATCCGTGAGATTTT 57.463 29.630 0.00 0.00 36.33 1.82
621 658 9.193133 CTTAACGATGTTATATCCGTGAGATTT 57.807 33.333 0.00 0.00 36.33 2.17
622 659 8.358148 ACTTAACGATGTTATATCCGTGAGATT 58.642 33.333 0.00 0.00 36.33 2.40
623 660 7.883217 ACTTAACGATGTTATATCCGTGAGAT 58.117 34.615 0.00 0.00 39.15 2.75
624 661 7.228108 AGACTTAACGATGTTATATCCGTGAGA 59.772 37.037 0.00 0.00 35.28 3.27
625 662 7.361127 AGACTTAACGATGTTATATCCGTGAG 58.639 38.462 0.00 0.00 35.28 3.51
626 663 7.268199 AGACTTAACGATGTTATATCCGTGA 57.732 36.000 0.00 0.00 35.28 4.35
627 664 6.302549 CGAGACTTAACGATGTTATATCCGTG 59.697 42.308 0.00 0.00 35.28 4.94
628 665 6.369005 CGAGACTTAACGATGTTATATCCGT 58.631 40.000 0.00 0.00 36.77 4.69
629 666 5.793952 CCGAGACTTAACGATGTTATATCCG 59.206 44.000 0.00 0.00 0.00 4.18
630 667 6.675987 ACCGAGACTTAACGATGTTATATCC 58.324 40.000 0.00 0.00 0.00 2.59
631 668 6.519078 CGACCGAGACTTAACGATGTTATATC 59.481 42.308 0.00 0.00 0.00 1.63
632 669 6.203530 TCGACCGAGACTTAACGATGTTATAT 59.796 38.462 0.00 0.00 0.00 0.86
633 670 5.523552 TCGACCGAGACTTAACGATGTTATA 59.476 40.000 0.00 0.00 0.00 0.98
634 671 4.333649 TCGACCGAGACTTAACGATGTTAT 59.666 41.667 0.00 0.00 0.00 1.89
635 672 3.684305 TCGACCGAGACTTAACGATGTTA 59.316 43.478 0.00 0.00 0.00 2.41
636 673 2.485426 TCGACCGAGACTTAACGATGTT 59.515 45.455 0.00 0.00 0.00 2.71
637 674 2.079158 TCGACCGAGACTTAACGATGT 58.921 47.619 0.00 0.00 0.00 3.06
638 675 2.438583 GTCGACCGAGACTTAACGATG 58.561 52.381 3.51 0.00 38.09 3.84
639 676 2.821307 GTCGACCGAGACTTAACGAT 57.179 50.000 3.51 0.00 38.09 3.73
647 684 2.923605 AAATCTCAGTCGACCGAGAC 57.076 50.000 28.97 0.00 40.92 3.36
648 685 3.607741 ACTAAATCTCAGTCGACCGAGA 58.392 45.455 28.64 28.64 42.25 4.04
649 686 5.481200 TTACTAAATCTCAGTCGACCGAG 57.519 43.478 20.59 20.59 0.00 4.63
650 687 5.008415 GGATTACTAAATCTCAGTCGACCGA 59.992 44.000 13.01 6.63 41.18 4.69
651 688 5.213675 GGATTACTAAATCTCAGTCGACCG 58.786 45.833 13.01 1.05 41.18 4.79
652 689 5.530712 GGGATTACTAAATCTCAGTCGACC 58.469 45.833 13.01 0.00 41.55 4.79
653 690 5.008415 TCGGGATTACTAAATCTCAGTCGAC 59.992 44.000 7.70 7.70 41.95 4.20
654 691 5.128205 TCGGGATTACTAAATCTCAGTCGA 58.872 41.667 0.00 0.00 41.95 4.20
655 692 5.434352 TCGGGATTACTAAATCTCAGTCG 57.566 43.478 0.00 0.00 41.95 4.18
656 693 9.194271 GTAAATCGGGATTACTAAATCTCAGTC 57.806 37.037 0.00 0.00 41.95 3.51
657 694 8.925338 AGTAAATCGGGATTACTAAATCTCAGT 58.075 33.333 6.63 0.00 41.95 3.41
658 695 9.765795 AAGTAAATCGGGATTACTAAATCTCAG 57.234 33.333 8.25 0.00 41.95 3.35
686 723 9.958180 TCTCACAGGAAAAACAATAGATATTCA 57.042 29.630 0.00 0.00 0.00 2.57
689 726 9.606631 GTCTCTCACAGGAAAAACAATAGATAT 57.393 33.333 0.00 0.00 0.00 1.63
705 742 3.505680 ACACTAGCTTGAGTCTCTCACAG 59.494 47.826 1.04 2.82 40.46 3.66
718 789 2.229784 GCCTTCATGCAAACACTAGCTT 59.770 45.455 0.00 0.00 0.00 3.74
743 814 7.696755 TGTTCATATCTGCACATTCATGTAAC 58.303 34.615 0.00 0.00 39.39 2.50
744 815 7.862512 TGTTCATATCTGCACATTCATGTAA 57.137 32.000 0.00 0.00 39.39 2.41
745 816 8.454570 AATGTTCATATCTGCACATTCATGTA 57.545 30.769 3.78 0.00 42.97 2.29
746 817 6.954487 ATGTTCATATCTGCACATTCATGT 57.046 33.333 0.00 0.00 36.04 3.21
752 823 5.704515 GGCTAGAATGTTCATATCTGCACAT 59.295 40.000 0.00 0.00 40.35 3.21
753 824 5.059161 GGCTAGAATGTTCATATCTGCACA 58.941 41.667 0.00 0.00 33.03 4.57
798 880 2.019984 GCTGTTGGAAATAGGGAGCAG 58.980 52.381 0.00 0.00 35.37 4.24
841 923 6.007677 GTCGTTGAGAAATTGAACACGTATC 58.992 40.000 0.00 0.00 0.00 2.24
869 951 3.497405 GGAGATGCAGGATCTAAATGCCA 60.497 47.826 4.06 1.29 41.91 4.92
871 953 3.080319 GGGAGATGCAGGATCTAAATGC 58.920 50.000 4.06 0.00 41.91 3.56
872 954 3.332919 CGGGAGATGCAGGATCTAAATG 58.667 50.000 4.06 0.00 41.91 2.32
873 955 2.304180 CCGGGAGATGCAGGATCTAAAT 59.696 50.000 4.06 0.00 41.91 1.40
875 957 1.342074 CCGGGAGATGCAGGATCTAA 58.658 55.000 4.06 0.00 41.91 2.10
876 958 0.188587 ACCGGGAGATGCAGGATCTA 59.811 55.000 6.32 0.00 41.91 1.98
881 968 1.153289 CTTGACCGGGAGATGCAGG 60.153 63.158 6.32 0.00 0.00 4.85
886 973 2.370445 CCTGCCTTGACCGGGAGAT 61.370 63.158 6.32 0.00 44.48 2.75
916 1003 3.006537 AGTGTGTGGTGTGTGTAGGATAC 59.993 47.826 0.00 0.00 43.42 2.24
965 1056 2.883888 GCTCTTCTCTGGACTGGAGACT 60.884 54.545 0.00 0.00 39.23 3.24
966 1057 1.476488 GCTCTTCTCTGGACTGGAGAC 59.524 57.143 0.00 0.00 39.23 3.36
967 1058 1.076187 TGCTCTTCTCTGGACTGGAGA 59.924 52.381 0.00 0.00 37.96 3.71
968 1059 1.204467 GTGCTCTTCTCTGGACTGGAG 59.796 57.143 0.00 0.00 0.00 3.86
969 1060 1.261480 GTGCTCTTCTCTGGACTGGA 58.739 55.000 0.00 0.00 0.00 3.86
970 1061 0.972134 TGTGCTCTTCTCTGGACTGG 59.028 55.000 0.00 0.00 0.00 4.00
972 1063 1.342819 GTGTGTGCTCTTCTCTGGACT 59.657 52.381 0.00 0.00 0.00 3.85
973 1064 1.069204 TGTGTGTGCTCTTCTCTGGAC 59.931 52.381 0.00 0.00 0.00 4.02
985 1076 1.270274 TGCCATTCTTGATGTGTGTGC 59.730 47.619 0.00 0.00 33.71 4.57
1602 3025 2.909965 TTGGTGGTGAAAGCGGCC 60.910 61.111 0.00 0.00 36.92 6.13
1775 3201 4.373116 GGCAGGCGAAGTCGGTGA 62.373 66.667 2.47 0.00 36.95 4.02
1798 3227 2.421739 GACACACTGACTGCCCGT 59.578 61.111 0.00 0.00 0.00 5.28
1806 3235 1.590525 GGTTGCGTCGACACACTGA 60.591 57.895 17.16 0.00 0.00 3.41
1812 3241 2.962786 CCGTTGGTTGCGTCGACA 60.963 61.111 17.16 0.00 0.00 4.35
1930 3369 2.961531 TGGCTAGCCCAAAAACTGTA 57.038 45.000 30.81 5.05 41.82 2.74
1955 3394 7.435488 CACAACAGCTATACTATAGTGTTGGTC 59.565 40.741 28.47 7.96 45.78 4.02
2222 4038 3.503827 TCGATGGATCAGTGTGTGTAC 57.496 47.619 0.00 0.00 0.00 2.90
2224 4040 2.897436 CATCGATGGATCAGTGTGTGT 58.103 47.619 17.96 0.00 0.00 3.72
2271 4174 1.808411 TTGCAGGAAGAACCATCGAC 58.192 50.000 0.00 0.00 42.04 4.20
2275 4178 6.183360 CGAGAATAAATTGCAGGAAGAACCAT 60.183 38.462 0.00 0.00 42.04 3.55
2284 4187 6.867662 AGATTACCGAGAATAAATTGCAGG 57.132 37.500 0.00 0.00 0.00 4.85
2294 4231 9.429359 CAATCATTAGCTTAGATTACCGAGAAT 57.571 33.333 0.00 0.00 31.26 2.40
2550 4495 0.738389 CTGTGGCGAAGTTGTTGGTT 59.262 50.000 0.00 0.00 0.00 3.67
3114 5062 0.110823 GCACGACGCCAAAACTGTAG 60.111 55.000 0.00 0.00 32.94 2.74
3180 5132 0.188587 ACACCAGACTCCTGTCCTCA 59.811 55.000 0.00 0.00 43.91 3.86
3192 5144 0.240145 CTACGAAGCGTGACACCAGA 59.760 55.000 2.33 0.00 41.39 3.86
3195 5147 3.460144 GCTACGAAGCGTGACACC 58.540 61.111 2.33 0.00 41.39 4.16
3549 5510 7.681939 AGATATACCTTTGCGAAAGAACAAA 57.318 32.000 9.37 0.00 41.02 2.83
3767 6048 6.644347 TGGCAGAAAACAATAGAAAAACCAA 58.356 32.000 0.00 0.00 0.00 3.67
3891 6176 1.864082 TGTTACCATCACATATGCGCG 59.136 47.619 0.00 0.00 0.00 6.86
3941 6226 0.180406 AATGGTAAGGCGGGCAGTAG 59.820 55.000 3.78 0.00 0.00 2.57
3942 6227 0.621609 AAATGGTAAGGCGGGCAGTA 59.378 50.000 3.78 0.00 0.00 2.74
3943 6228 0.679960 GAAATGGTAAGGCGGGCAGT 60.680 55.000 3.78 0.00 0.00 4.40
4074 6374 9.057089 CATCAGGGAAAGACAATTATAGGTAAC 57.943 37.037 0.00 0.00 0.00 2.50
4089 6389 6.835174 TCAAGAATATCCTCATCAGGGAAAG 58.165 40.000 0.00 0.00 40.80 2.62
4094 6394 6.072618 GCACATTCAAGAATATCCTCATCAGG 60.073 42.308 0.00 0.00 42.01 3.86
4101 6401 4.166725 TGAGGGCACATTCAAGAATATCCT 59.833 41.667 0.00 1.15 0.00 3.24
4164 6490 1.530419 TGCTTGAAACCCGGCACAT 60.530 52.632 0.00 0.00 0.00 3.21
4195 6521 0.745845 CTTGTCAGGGAGCATTCGGG 60.746 60.000 0.00 0.00 0.00 5.14
4200 6526 2.475155 TGATCTCTTGTCAGGGAGCAT 58.525 47.619 0.00 0.00 41.21 3.79
4201 6527 1.552337 GTGATCTCTTGTCAGGGAGCA 59.448 52.381 0.00 0.00 44.00 4.26
4209 6535 3.443037 CTCCGTGATGTGATCTCTTGTC 58.557 50.000 0.00 0.00 0.00 3.18
4210 6536 2.417924 GCTCCGTGATGTGATCTCTTGT 60.418 50.000 0.00 0.00 0.00 3.16
4211 6537 2.200067 GCTCCGTGATGTGATCTCTTG 58.800 52.381 0.00 0.00 0.00 3.02
4227 6553 2.257286 AATGCACGCATGAACGCTCC 62.257 55.000 5.06 0.00 36.68 4.70
4240 6566 0.456653 GTCAATGCCACGGAATGCAC 60.457 55.000 0.00 0.00 40.88 4.57
4262 6588 3.866651 CATCCTTGAACAGACCTAGTGG 58.133 50.000 0.00 0.00 39.83 4.00
4303 6629 3.492656 GCAGATCAATACCGCCTCACTTA 60.493 47.826 0.00 0.00 0.00 2.24
4307 6633 0.249447 CGCAGATCAATACCGCCTCA 60.249 55.000 0.00 0.00 0.00 3.86
4308 6634 0.032130 TCGCAGATCAATACCGCCTC 59.968 55.000 0.00 0.00 0.00 4.70
4315 6641 8.942338 AGTAACTTAAACATCGCAGATCAATA 57.058 30.769 0.00 0.00 45.12 1.90
4342 6668 4.647853 TGAACTTATAGGCGTGTCCATACT 59.352 41.667 0.00 0.00 37.29 2.12
4349 6675 4.433615 CATCACTGAACTTATAGGCGTGT 58.566 43.478 0.00 0.00 0.00 4.49
4350 6676 3.804325 CCATCACTGAACTTATAGGCGTG 59.196 47.826 0.00 0.00 0.00 5.34
4356 6682 6.778834 TTCGGTACCATCACTGAACTTATA 57.221 37.500 13.54 0.00 38.57 0.98
4357 6683 5.670792 TTCGGTACCATCACTGAACTTAT 57.329 39.130 13.54 0.00 38.57 1.73
4368 6694 4.321452 GGGAAAACCTTTTTCGGTACCATC 60.321 45.833 13.54 0.00 35.89 3.51
4371 6697 2.297033 GGGGAAAACCTTTTTCGGTACC 59.703 50.000 0.16 0.16 40.03 3.34
4375 6701 0.315886 CGGGGGAAAACCTTTTTCGG 59.684 55.000 5.53 0.00 40.03 4.30
4376 6702 0.319211 GCGGGGGAAAACCTTTTTCG 60.319 55.000 5.53 0.00 40.03 3.46
4377 6703 1.045407 AGCGGGGGAAAACCTTTTTC 58.955 50.000 3.25 3.25 40.03 2.29
4378 6704 1.502690 AAGCGGGGGAAAACCTTTTT 58.497 45.000 0.00 0.00 40.03 1.94
4379 6705 1.140052 CAAAGCGGGGGAAAACCTTTT 59.860 47.619 0.00 0.00 40.03 2.27
4380 6706 0.756294 CAAAGCGGGGGAAAACCTTT 59.244 50.000 0.00 0.00 40.03 3.11
4381 6707 0.397957 ACAAAGCGGGGGAAAACCTT 60.398 50.000 0.00 0.00 40.03 3.50
4382 6708 0.479378 TACAAAGCGGGGGAAAACCT 59.521 50.000 0.00 0.00 40.03 3.50
4383 6709 1.552578 ATACAAAGCGGGGGAAAACC 58.447 50.000 0.00 0.00 39.11 3.27
4384 6710 2.094390 GGAATACAAAGCGGGGGAAAAC 60.094 50.000 0.00 0.00 0.00 2.43
4385 6711 2.172679 GGAATACAAAGCGGGGGAAAA 58.827 47.619 0.00 0.00 0.00 2.29
4386 6712 1.075698 TGGAATACAAAGCGGGGGAAA 59.924 47.619 0.00 0.00 0.00 3.13
4387 6713 0.699399 TGGAATACAAAGCGGGGGAA 59.301 50.000 0.00 0.00 0.00 3.97
4388 6714 0.699399 TTGGAATACAAAGCGGGGGA 59.301 50.000 0.00 0.00 35.79 4.81
4389 6715 1.551452 TTTGGAATACAAAGCGGGGG 58.449 50.000 0.00 0.00 43.81 5.40
4398 6724 5.707764 TCGGTGTTGATTGATTTGGAATACA 59.292 36.000 0.00 0.00 0.00 2.29
4401 6727 5.920193 ATCGGTGTTGATTGATTTGGAAT 57.080 34.783 0.00 0.00 0.00 3.01
4409 6735 5.107259 CGTTTCTTGTATCGGTGTTGATTGA 60.107 40.000 0.00 0.00 0.00 2.57
4410 6736 5.079406 CGTTTCTTGTATCGGTGTTGATTG 58.921 41.667 0.00 0.00 0.00 2.67
4412 6738 3.124636 GCGTTTCTTGTATCGGTGTTGAT 59.875 43.478 0.00 0.00 0.00 2.57
4414 6740 2.478894 AGCGTTTCTTGTATCGGTGTTG 59.521 45.455 0.00 0.00 32.99 3.33
4416 6742 2.066262 CAGCGTTTCTTGTATCGGTGT 58.934 47.619 7.30 0.00 43.49 4.16
4419 6745 1.006832 CCCAGCGTTTCTTGTATCGG 58.993 55.000 0.00 0.00 0.00 4.18
4421 6747 0.733150 GCCCCAGCGTTTCTTGTATC 59.267 55.000 0.00 0.00 0.00 2.24
4423 6749 4.390048 GCCCCAGCGTTTCTTGTA 57.610 55.556 0.00 0.00 0.00 2.41
4437 6763 3.259425 CTTGTTGTGCTGCTCGCCC 62.259 63.158 0.00 0.00 38.05 6.13
4438 6764 2.253452 CTTGTTGTGCTGCTCGCC 59.747 61.111 0.00 0.00 38.05 5.54
4439 6765 2.428071 GCTTGTTGTGCTGCTCGC 60.428 61.111 0.00 0.00 39.77 5.03
4440 6766 0.950555 TAGGCTTGTTGTGCTGCTCG 60.951 55.000 0.00 0.00 0.00 5.03
4441 6767 1.238439 TTAGGCTTGTTGTGCTGCTC 58.762 50.000 0.00 0.00 0.00 4.26
4442 6768 1.691196 TTTAGGCTTGTTGTGCTGCT 58.309 45.000 0.00 0.00 0.00 4.24
4478 7647 4.025401 GTCGGGCTGCCGTTGTTG 62.025 66.667 13.40 0.00 34.52 3.33
4480 7649 4.555709 TTGTCGGGCTGCCGTTGT 62.556 61.111 13.40 0.00 34.52 3.32
4481 7650 3.254014 CTTTGTCGGGCTGCCGTTG 62.254 63.158 13.40 5.19 34.52 4.10
4485 7654 4.043200 GCACTTTGTCGGGCTGCC 62.043 66.667 11.05 11.05 0.00 4.85
4487 7656 3.726517 CCGCACTTTGTCGGGCTG 61.727 66.667 0.00 0.00 41.82 4.85
4489 7658 2.746277 ATCCGCACTTTGTCGGGC 60.746 61.111 0.64 0.00 45.31 6.13
4490 7659 1.375396 TCATCCGCACTTTGTCGGG 60.375 57.895 0.64 0.00 45.31 5.14
4491 7660 1.635663 GGTCATCCGCACTTTGTCGG 61.636 60.000 0.00 0.00 46.52 4.79
4492 7661 1.635663 GGGTCATCCGCACTTTGTCG 61.636 60.000 0.00 0.00 33.83 4.35
4519 7688 2.163010 TGTTCGTTTCTAGAGGGCGTAG 59.837 50.000 10.80 0.00 0.00 3.51
4520 7689 2.161855 TGTTCGTTTCTAGAGGGCGTA 58.838 47.619 10.80 1.83 0.00 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.