Multiple sequence alignment - TraesCS6D01G360800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G360800 chr6D 100.000 2440 0 0 961 3400 452406302 452403863 0.000000e+00 4506.0
1 TraesCS6D01G360800 chr6D 88.746 1475 103 32 1054 2477 452454900 452456362 0.000000e+00 1746.0
2 TraesCS6D01G360800 chr6D 100.000 588 0 0 1 588 452407262 452406675 0.000000e+00 1086.0
3 TraesCS6D01G360800 chr6D 95.000 260 13 0 4 263 470386206 470385947 3.160000e-110 409.0
4 TraesCS6D01G360800 chr6D 90.604 149 11 2 2712 2859 16935649 16935503 9.630000e-46 195.0
5 TraesCS6D01G360800 chr6D 100.000 31 0 0 3031 3061 452456733 452456763 1.320000e-04 58.4
6 TraesCS6D01G360800 chr6A 90.661 1799 96 38 961 2701 597940085 597938301 0.000000e+00 2326.0
7 TraesCS6D01G360800 chr6A 85.666 1465 146 46 1055 2477 598024343 598025785 0.000000e+00 1483.0
8 TraesCS6D01G360800 chr6A 89.744 468 33 9 2860 3322 597938302 597937845 4.890000e-163 584.0
9 TraesCS6D01G360800 chr6A 96.429 252 9 0 1 252 464388594 464388845 1.890000e-112 416.0
10 TraesCS6D01G360800 chr6A 89.130 184 17 3 255 435 597940639 597940456 3.410000e-55 226.0
11 TraesCS6D01G360800 chr6A 90.533 169 9 3 427 588 597940264 597940096 2.050000e-52 217.0
12 TraesCS6D01G360800 chr6B 90.554 1715 91 38 961 2645 687016859 687015186 0.000000e+00 2204.0
13 TraesCS6D01G360800 chr6B 87.500 1400 114 28 967 2335 687083299 687084668 0.000000e+00 1559.0
14 TraesCS6D01G360800 chr6B 91.192 386 24 7 2913 3289 687004908 687004524 1.810000e-142 516.0
15 TraesCS6D01G360800 chr6B 95.327 214 8 2 3139 3350 687014867 687014654 4.200000e-89 339.0
16 TraesCS6D01G360800 chr6B 88.268 179 19 2 255 433 687017452 687017276 2.660000e-51 213.0
17 TraesCS6D01G360800 chr6B 87.719 171 14 2 2981 3144 687015073 687014903 3.460000e-45 193.0
18 TraesCS6D01G360800 chr6B 85.876 177 11 5 426 588 687017046 687016870 3.490000e-40 176.0
19 TraesCS6D01G360800 chrUn 92.611 406 24 4 1271 1675 306829854 306830254 2.270000e-161 579.0
20 TraesCS6D01G360800 chr3B 92.611 406 24 4 1271 1675 809102338 809102738 2.270000e-161 579.0
21 TraesCS6D01G360800 chr3B 92.574 404 21 7 1276 1675 783880986 783881384 3.810000e-159 571.0
22 TraesCS6D01G360800 chr3B 92.398 171 12 1 2088 2257 779740909 779740739 3.390000e-60 243.0
23 TraesCS6D01G360800 chr3B 92.398 171 12 1 2088 2257 779765468 779765298 3.390000e-60 243.0
24 TraesCS6D01G360800 chr3A 92.365 406 25 4 1271 1675 736251651 736252051 1.060000e-159 573.0
25 TraesCS6D01G360800 chr3A 83.230 322 23 16 2088 2391 92676795 92676487 2.010000e-67 267.0
26 TraesCS6D01G360800 chr4D 96.825 252 8 0 1 252 470150417 470150166 4.060000e-114 422.0
27 TraesCS6D01G360800 chr4D 96.457 254 9 0 1 254 344531890 344532143 1.460000e-113 420.0
28 TraesCS6D01G360800 chr3D 96.825 252 8 0 1 252 159510404 159510153 4.060000e-114 422.0
29 TraesCS6D01G360800 chr3D 96.825 252 8 0 1 252 539735628 539735377 4.060000e-114 422.0
30 TraesCS6D01G360800 chr3D 95.000 260 13 0 1 260 422473496 422473755 3.160000e-110 409.0
31 TraesCS6D01G360800 chr3D 93.182 176 11 1 2088 2263 126257000 126256826 1.210000e-64 257.0
32 TraesCS6D01G360800 chr3D 85.283 265 20 9 2088 2337 544189122 544189382 4.350000e-64 255.0
33 TraesCS6D01G360800 chr3D 91.444 187 12 3 2860 3044 544189508 544189692 1.570000e-63 254.0
34 TraesCS6D01G360800 chr2D 95.402 261 11 1 1 261 379556401 379556660 6.790000e-112 414.0
35 TraesCS6D01G360800 chr2D 93.714 175 11 0 2088 2262 305470463 305470289 2.600000e-66 263.0
36 TraesCS6D01G360800 chr2D 91.979 187 13 1 2860 3044 305470077 305469891 9.360000e-66 261.0
37 TraesCS6D01G360800 chr5B 95.385 260 11 1 1 259 100032268 100032009 2.440000e-111 412.0
38 TraesCS6D01G360800 chr1A 85.675 363 24 9 2088 2434 515828527 515828177 1.160000e-94 357.0
39 TraesCS6D01G360800 chr1D 88.755 249 23 3 2861 3107 489723020 489723265 1.980000e-77 300.0
40 TraesCS6D01G360800 chr1D 93.583 187 10 1 2860 3044 155903752 155903938 9.290000e-71 278.0
41 TraesCS6D01G360800 chr7B 91.813 171 13 1 2088 2257 513667656 513667826 1.580000e-58 237.0
42 TraesCS6D01G360800 chr1B 83.908 261 24 9 2861 3107 682084491 682084235 2.040000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G360800 chr6D 452403863 452407262 3399 True 2796.00 4506 100.0000 1 3400 2 chr6D.!!$R3 3399
1 TraesCS6D01G360800 chr6D 452454900 452456763 1863 False 902.20 1746 94.3730 1054 3061 2 chr6D.!!$F1 2007
2 TraesCS6D01G360800 chr6A 598024343 598025785 1442 False 1483.00 1483 85.6660 1055 2477 1 chr6A.!!$F2 1422
3 TraesCS6D01G360800 chr6A 597937845 597940639 2794 True 838.25 2326 90.0170 255 3322 4 chr6A.!!$R1 3067
4 TraesCS6D01G360800 chr6B 687083299 687084668 1369 False 1559.00 1559 87.5000 967 2335 1 chr6B.!!$F1 1368
5 TraesCS6D01G360800 chr6B 687014654 687017452 2798 True 625.00 2204 89.5488 255 3350 5 chr6B.!!$R2 3095
6 TraesCS6D01G360800 chr3D 544189122 544189692 570 False 254.50 255 88.3635 2088 3044 2 chr3D.!!$F2 956
7 TraesCS6D01G360800 chr2D 305469891 305470463 572 True 262.00 263 92.8465 2088 3044 2 chr2D.!!$R1 956

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.036306 GACCAAGGCGGAGAGGAAAA 59.964 55.0 0.00 0.0 38.63 2.29 F
25 26 0.037232 AAGGCGGAGAGGAAAACGAG 60.037 55.0 0.00 0.0 0.00 4.18 F
27 28 0.037605 GGCGGAGAGGAAAACGAGAA 60.038 55.0 0.00 0.0 0.00 2.87 F
251 252 0.106819 GCACCTAGACGGAGGGAGTA 60.107 60.0 5.42 0.0 41.36 2.59 F
1953 2280 0.036306 GTTTCTGGATCGGGTGGTGT 59.964 55.0 0.00 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 1974 0.456824 ACAGCGTCATGTAGAGCACG 60.457 55.0 0.0 0.0 35.32 5.34 R
1878 2204 0.608640 GGTTCAGTGGATCTGTCGGT 59.391 55.0 0.0 0.0 43.97 4.69 R
1922 2249 0.734253 CCAGAAACGTCAGCGAGGAG 60.734 60.0 0.0 0.0 42.00 3.69 R
2164 2535 0.613777 AGGATCACGGAAGGAACCAC 59.386 55.0 0.0 0.0 30.21 4.16 R
2765 3215 0.033601 TCCCAAGTGGCTGTTTGTGT 60.034 50.0 0.0 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.821589 GCGACCAAGGCGGAGAGG 62.822 72.222 0.00 0.00 38.63 3.69
18 19 3.068691 CGACCAAGGCGGAGAGGA 61.069 66.667 0.00 0.00 38.63 3.71
19 20 2.646175 CGACCAAGGCGGAGAGGAA 61.646 63.158 0.00 0.00 38.63 3.36
20 21 1.677552 GACCAAGGCGGAGAGGAAA 59.322 57.895 0.00 0.00 38.63 3.13
21 22 0.036306 GACCAAGGCGGAGAGGAAAA 59.964 55.000 0.00 0.00 38.63 2.29
22 23 0.250770 ACCAAGGCGGAGAGGAAAAC 60.251 55.000 0.00 0.00 38.63 2.43
23 24 1.298859 CCAAGGCGGAGAGGAAAACG 61.299 60.000 0.00 0.00 36.56 3.60
24 25 0.320421 CAAGGCGGAGAGGAAAACGA 60.320 55.000 0.00 0.00 0.00 3.85
25 26 0.037232 AAGGCGGAGAGGAAAACGAG 60.037 55.000 0.00 0.00 0.00 4.18
26 27 0.898789 AGGCGGAGAGGAAAACGAGA 60.899 55.000 0.00 0.00 0.00 4.04
27 28 0.037605 GGCGGAGAGGAAAACGAGAA 60.038 55.000 0.00 0.00 0.00 2.87
28 29 1.607251 GGCGGAGAGGAAAACGAGAAA 60.607 52.381 0.00 0.00 0.00 2.52
29 30 2.140717 GCGGAGAGGAAAACGAGAAAA 58.859 47.619 0.00 0.00 0.00 2.29
30 31 2.096367 GCGGAGAGGAAAACGAGAAAAC 60.096 50.000 0.00 0.00 0.00 2.43
31 32 3.391049 CGGAGAGGAAAACGAGAAAACT 58.609 45.455 0.00 0.00 0.00 2.66
32 33 3.808174 CGGAGAGGAAAACGAGAAAACTT 59.192 43.478 0.00 0.00 0.00 2.66
33 34 4.986659 CGGAGAGGAAAACGAGAAAACTTA 59.013 41.667 0.00 0.00 0.00 2.24
34 35 5.464389 CGGAGAGGAAAACGAGAAAACTTAA 59.536 40.000 0.00 0.00 0.00 1.85
35 36 6.147328 CGGAGAGGAAAACGAGAAAACTTAAT 59.853 38.462 0.00 0.00 0.00 1.40
36 37 7.298854 GGAGAGGAAAACGAGAAAACTTAATG 58.701 38.462 0.00 0.00 0.00 1.90
37 38 7.041303 GGAGAGGAAAACGAGAAAACTTAATGT 60.041 37.037 0.00 0.00 0.00 2.71
38 39 7.862648 AGAGGAAAACGAGAAAACTTAATGTC 58.137 34.615 0.00 0.00 0.00 3.06
39 40 7.715686 AGAGGAAAACGAGAAAACTTAATGTCT 59.284 33.333 0.00 0.00 0.00 3.41
40 41 8.221965 AGGAAAACGAGAAAACTTAATGTCTT 57.778 30.769 0.00 0.00 0.00 3.01
41 42 8.683615 AGGAAAACGAGAAAACTTAATGTCTTT 58.316 29.630 0.00 0.00 0.00 2.52
42 43 9.297586 GGAAAACGAGAAAACTTAATGTCTTTT 57.702 29.630 0.00 0.00 0.00 2.27
45 46 7.679659 ACGAGAAAACTTAATGTCTTTTTGC 57.320 32.000 0.00 0.00 0.00 3.68
46 47 7.480810 ACGAGAAAACTTAATGTCTTTTTGCT 58.519 30.769 0.00 0.00 0.00 3.91
47 48 8.617809 ACGAGAAAACTTAATGTCTTTTTGCTA 58.382 29.630 0.00 0.00 0.00 3.49
48 49 9.445786 CGAGAAAACTTAATGTCTTTTTGCTAA 57.554 29.630 0.00 0.00 0.00 3.09
88 89 6.185852 CAATGAACTAATCACTGCATGTCA 57.814 37.500 0.00 0.00 41.93 3.58
89 90 6.792326 CAATGAACTAATCACTGCATGTCAT 58.208 36.000 0.00 0.00 41.93 3.06
90 91 5.806366 TGAACTAATCACTGCATGTCATG 57.194 39.130 8.56 8.56 31.50 3.07
91 92 5.247862 TGAACTAATCACTGCATGTCATGT 58.752 37.500 14.26 0.00 31.50 3.21
92 93 5.706833 TGAACTAATCACTGCATGTCATGTT 59.293 36.000 14.26 2.48 31.50 2.71
93 94 6.207221 TGAACTAATCACTGCATGTCATGTTT 59.793 34.615 14.26 0.00 31.50 2.83
94 95 5.946298 ACTAATCACTGCATGTCATGTTTG 58.054 37.500 14.26 8.89 0.00 2.93
95 96 3.861276 ATCACTGCATGTCATGTTTGG 57.139 42.857 14.26 5.14 0.00 3.28
96 97 2.585330 TCACTGCATGTCATGTTTGGT 58.415 42.857 14.26 5.69 0.00 3.67
97 98 3.749226 TCACTGCATGTCATGTTTGGTA 58.251 40.909 14.26 0.00 0.00 3.25
98 99 3.752747 TCACTGCATGTCATGTTTGGTAG 59.247 43.478 14.26 6.33 0.00 3.18
99 100 3.503363 CACTGCATGTCATGTTTGGTAGT 59.497 43.478 14.26 6.85 0.00 2.73
100 101 3.753272 ACTGCATGTCATGTTTGGTAGTC 59.247 43.478 14.26 0.00 0.00 2.59
101 102 4.005650 CTGCATGTCATGTTTGGTAGTCT 58.994 43.478 14.26 0.00 0.00 3.24
102 103 4.002982 TGCATGTCATGTTTGGTAGTCTC 58.997 43.478 14.26 0.00 0.00 3.36
103 104 4.002982 GCATGTCATGTTTGGTAGTCTCA 58.997 43.478 14.26 0.00 0.00 3.27
104 105 4.455533 GCATGTCATGTTTGGTAGTCTCAA 59.544 41.667 14.26 0.00 0.00 3.02
105 106 5.391310 GCATGTCATGTTTGGTAGTCTCAAG 60.391 44.000 14.26 0.00 0.00 3.02
106 107 5.290493 TGTCATGTTTGGTAGTCTCAAGT 57.710 39.130 0.00 0.00 0.00 3.16
107 108 5.297547 TGTCATGTTTGGTAGTCTCAAGTC 58.702 41.667 0.00 0.00 0.00 3.01
108 109 5.163353 TGTCATGTTTGGTAGTCTCAAGTCA 60.163 40.000 0.00 0.00 0.00 3.41
109 110 5.934625 GTCATGTTTGGTAGTCTCAAGTCAT 59.065 40.000 0.00 0.00 0.00 3.06
110 111 6.428159 GTCATGTTTGGTAGTCTCAAGTCATT 59.572 38.462 0.00 0.00 0.00 2.57
111 112 6.427853 TCATGTTTGGTAGTCTCAAGTCATTG 59.572 38.462 0.00 0.00 37.80 2.82
112 113 5.924356 TGTTTGGTAGTCTCAAGTCATTGA 58.076 37.500 0.00 0.00 43.20 2.57
113 114 6.353323 TGTTTGGTAGTCTCAAGTCATTGAA 58.647 36.000 0.00 0.00 44.68 2.69
114 115 6.826231 TGTTTGGTAGTCTCAAGTCATTGAAA 59.174 34.615 0.00 0.00 44.68 2.69
115 116 7.012327 TGTTTGGTAGTCTCAAGTCATTGAAAG 59.988 37.037 0.00 0.00 44.68 2.62
116 117 4.997395 TGGTAGTCTCAAGTCATTGAAAGC 59.003 41.667 0.00 0.00 44.68 3.51
117 118 4.997395 GGTAGTCTCAAGTCATTGAAAGCA 59.003 41.667 0.00 0.00 44.68 3.91
118 119 5.645497 GGTAGTCTCAAGTCATTGAAAGCAT 59.355 40.000 0.00 0.00 44.68 3.79
119 120 5.624344 AGTCTCAAGTCATTGAAAGCATG 57.376 39.130 0.00 0.00 44.68 4.06
120 121 4.082895 AGTCTCAAGTCATTGAAAGCATGC 60.083 41.667 10.51 10.51 44.68 4.06
121 122 3.822167 TCTCAAGTCATTGAAAGCATGCA 59.178 39.130 21.98 0.00 44.68 3.96
122 123 3.904571 TCAAGTCATTGAAAGCATGCAC 58.095 40.909 21.98 11.31 42.47 4.57
123 124 2.624316 AGTCATTGAAAGCATGCACG 57.376 45.000 21.98 0.00 0.00 5.34
124 125 1.200716 AGTCATTGAAAGCATGCACGG 59.799 47.619 21.98 1.85 0.00 4.94
125 126 0.109179 TCATTGAAAGCATGCACGGC 60.109 50.000 21.98 6.69 0.00 5.68
126 127 1.079875 CATTGAAAGCATGCACGGCC 61.080 55.000 21.98 4.60 0.00 6.13
127 128 2.229690 ATTGAAAGCATGCACGGCCC 62.230 55.000 21.98 3.14 0.00 5.80
128 129 3.372730 GAAAGCATGCACGGCCCA 61.373 61.111 21.98 0.00 0.00 5.36
129 130 3.631487 GAAAGCATGCACGGCCCAC 62.631 63.158 21.98 0.00 0.00 4.61
130 131 4.972733 AAGCATGCACGGCCCACA 62.973 61.111 21.98 0.00 0.00 4.17
131 132 4.746309 AGCATGCACGGCCCACAT 62.746 61.111 21.98 0.00 0.00 3.21
132 133 4.197498 GCATGCACGGCCCACATC 62.197 66.667 14.21 0.00 0.00 3.06
133 134 2.438975 CATGCACGGCCCACATCT 60.439 61.111 0.00 0.00 0.00 2.90
134 135 2.124570 ATGCACGGCCCACATCTC 60.125 61.111 0.00 0.00 0.00 2.75
135 136 2.673200 ATGCACGGCCCACATCTCT 61.673 57.895 0.00 0.00 0.00 3.10
136 137 2.045926 GCACGGCCCACATCTCTT 60.046 61.111 0.00 0.00 0.00 2.85
137 138 1.220749 GCACGGCCCACATCTCTTA 59.779 57.895 0.00 0.00 0.00 2.10
138 139 0.179045 GCACGGCCCACATCTCTTAT 60.179 55.000 0.00 0.00 0.00 1.73
139 140 1.747206 GCACGGCCCACATCTCTTATT 60.747 52.381 0.00 0.00 0.00 1.40
140 141 1.942657 CACGGCCCACATCTCTTATTG 59.057 52.381 0.00 0.00 0.00 1.90
141 142 1.134098 ACGGCCCACATCTCTTATTGG 60.134 52.381 0.00 0.00 0.00 3.16
142 143 1.134098 CGGCCCACATCTCTTATTGGT 60.134 52.381 0.00 0.00 0.00 3.67
143 144 2.683742 CGGCCCACATCTCTTATTGGTT 60.684 50.000 0.00 0.00 0.00 3.67
144 145 2.689983 GGCCCACATCTCTTATTGGTTG 59.310 50.000 0.00 0.00 0.00 3.77
145 146 3.620488 GCCCACATCTCTTATTGGTTGA 58.380 45.455 0.00 0.00 0.00 3.18
146 147 4.210331 GCCCACATCTCTTATTGGTTGAT 58.790 43.478 0.00 0.00 0.00 2.57
147 148 5.376625 GCCCACATCTCTTATTGGTTGATA 58.623 41.667 0.00 0.00 0.00 2.15
148 149 6.006449 GCCCACATCTCTTATTGGTTGATAT 58.994 40.000 0.00 0.00 0.00 1.63
149 150 6.072286 GCCCACATCTCTTATTGGTTGATATG 60.072 42.308 0.00 0.00 0.00 1.78
150 151 7.000472 CCCACATCTCTTATTGGTTGATATGT 59.000 38.462 0.00 0.00 30.96 2.29
151 152 7.040892 CCCACATCTCTTATTGGTTGATATGTG 60.041 40.741 11.28 11.28 41.13 3.21
152 153 7.716560 CCACATCTCTTATTGGTTGATATGTGA 59.283 37.037 16.67 0.68 42.58 3.58
153 154 8.554528 CACATCTCTTATTGGTTGATATGTGAC 58.445 37.037 12.30 0.00 42.58 3.67
154 155 8.267183 ACATCTCTTATTGGTTGATATGTGACA 58.733 33.333 0.00 0.00 30.15 3.58
155 156 9.112725 CATCTCTTATTGGTTGATATGTGACAA 57.887 33.333 0.00 0.00 0.00 3.18
156 157 9.685276 ATCTCTTATTGGTTGATATGTGACAAA 57.315 29.630 0.00 0.00 0.00 2.83
157 158 9.513906 TCTCTTATTGGTTGATATGTGACAAAA 57.486 29.630 0.00 0.00 0.00 2.44
158 159 9.559958 CTCTTATTGGTTGATATGTGACAAAAC 57.440 33.333 0.00 0.00 0.00 2.43
159 160 9.072375 TCTTATTGGTTGATATGTGACAAAACA 57.928 29.630 0.00 0.00 0.00 2.83
160 161 9.689976 CTTATTGGTTGATATGTGACAAAACAA 57.310 29.630 1.24 1.24 32.81 2.83
161 162 9.689976 TTATTGGTTGATATGTGACAAAACAAG 57.310 29.630 4.76 0.00 32.83 3.16
162 163 6.951062 TGGTTGATATGTGACAAAACAAGA 57.049 33.333 0.00 0.00 32.81 3.02
163 164 7.340122 TGGTTGATATGTGACAAAACAAGAA 57.660 32.000 0.00 0.00 32.81 2.52
164 165 7.776107 TGGTTGATATGTGACAAAACAAGAAA 58.224 30.769 0.00 0.00 32.81 2.52
165 166 7.704472 TGGTTGATATGTGACAAAACAAGAAAC 59.296 33.333 0.00 0.00 32.81 2.78
166 167 7.096640 GGTTGATATGTGACAAAACAAGAAACG 60.097 37.037 0.00 0.00 32.81 3.60
167 168 7.252965 TGATATGTGACAAAACAAGAAACGA 57.747 32.000 0.00 0.00 32.81 3.85
168 169 7.351981 TGATATGTGACAAAACAAGAAACGAG 58.648 34.615 0.00 0.00 32.81 4.18
169 170 4.349663 TGTGACAAAACAAGAAACGAGG 57.650 40.909 0.00 0.00 0.00 4.63
170 171 4.004314 TGTGACAAAACAAGAAACGAGGA 58.996 39.130 0.00 0.00 0.00 3.71
171 172 4.094294 TGTGACAAAACAAGAAACGAGGAG 59.906 41.667 0.00 0.00 0.00 3.69
172 173 3.625764 TGACAAAACAAGAAACGAGGAGG 59.374 43.478 0.00 0.00 0.00 4.30
173 174 2.949644 ACAAAACAAGAAACGAGGAGGG 59.050 45.455 0.00 0.00 0.00 4.30
174 175 3.211045 CAAAACAAGAAACGAGGAGGGA 58.789 45.455 0.00 0.00 0.00 4.20
175 176 2.841442 AACAAGAAACGAGGAGGGAG 57.159 50.000 0.00 0.00 0.00 4.30
176 177 1.718280 ACAAGAAACGAGGAGGGAGT 58.282 50.000 0.00 0.00 0.00 3.85
177 178 2.047830 ACAAGAAACGAGGAGGGAGTT 58.952 47.619 0.00 0.00 0.00 3.01
178 179 3.236896 ACAAGAAACGAGGAGGGAGTTA 58.763 45.455 0.00 0.00 0.00 2.24
179 180 3.644738 ACAAGAAACGAGGAGGGAGTTAA 59.355 43.478 0.00 0.00 0.00 2.01
180 181 4.286291 ACAAGAAACGAGGAGGGAGTTAAT 59.714 41.667 0.00 0.00 0.00 1.40
181 182 4.473477 AGAAACGAGGAGGGAGTTAATG 57.527 45.455 0.00 0.00 0.00 1.90
182 183 3.838903 AGAAACGAGGAGGGAGTTAATGT 59.161 43.478 0.00 0.00 0.00 2.71
183 184 5.021458 AGAAACGAGGAGGGAGTTAATGTA 58.979 41.667 0.00 0.00 0.00 2.29
184 185 4.732672 AACGAGGAGGGAGTTAATGTAC 57.267 45.455 0.00 0.00 0.00 2.90
185 186 3.029570 ACGAGGAGGGAGTTAATGTACC 58.970 50.000 0.00 0.00 0.00 3.34
186 187 2.034305 CGAGGAGGGAGTTAATGTACCG 59.966 54.545 0.00 0.00 0.00 4.02
187 188 3.029570 GAGGAGGGAGTTAATGTACCGT 58.970 50.000 0.00 0.00 0.00 4.83
188 189 2.764572 AGGAGGGAGTTAATGTACCGTG 59.235 50.000 0.00 0.00 0.00 4.94
189 190 2.547826 GAGGGAGTTAATGTACCGTGC 58.452 52.381 0.00 0.00 0.00 5.34
190 191 2.167900 GAGGGAGTTAATGTACCGTGCT 59.832 50.000 0.00 0.00 0.00 4.40
191 192 2.570302 AGGGAGTTAATGTACCGTGCTT 59.430 45.455 0.00 0.00 0.00 3.91
192 193 3.770933 AGGGAGTTAATGTACCGTGCTTA 59.229 43.478 0.00 0.00 0.00 3.09
193 194 4.223477 AGGGAGTTAATGTACCGTGCTTAA 59.777 41.667 0.00 0.00 0.00 1.85
194 195 4.569564 GGGAGTTAATGTACCGTGCTTAAG 59.430 45.833 0.00 0.00 0.00 1.85
195 196 5.173664 GGAGTTAATGTACCGTGCTTAAGT 58.826 41.667 4.02 0.00 0.00 2.24
196 197 6.332630 GGAGTTAATGTACCGTGCTTAAGTA 58.667 40.000 4.02 0.00 0.00 2.24
197 198 6.982724 GGAGTTAATGTACCGTGCTTAAGTAT 59.017 38.462 4.02 0.00 0.00 2.12
198 199 7.493645 GGAGTTAATGTACCGTGCTTAAGTATT 59.506 37.037 4.02 0.00 0.00 1.89
199 200 8.782339 AGTTAATGTACCGTGCTTAAGTATTT 57.218 30.769 4.02 0.00 0.00 1.40
200 201 9.223099 AGTTAATGTACCGTGCTTAAGTATTTT 57.777 29.630 4.02 0.00 0.00 1.82
201 202 9.269415 GTTAATGTACCGTGCTTAAGTATTTTG 57.731 33.333 4.02 0.00 0.00 2.44
202 203 5.866335 TGTACCGTGCTTAAGTATTTTGG 57.134 39.130 4.02 3.82 0.00 3.28
203 204 4.696402 TGTACCGTGCTTAAGTATTTTGGG 59.304 41.667 4.02 0.99 0.00 4.12
204 205 4.023726 ACCGTGCTTAAGTATTTTGGGA 57.976 40.909 4.02 0.00 0.00 4.37
205 206 4.595986 ACCGTGCTTAAGTATTTTGGGAT 58.404 39.130 4.02 0.00 0.00 3.85
206 207 5.014202 ACCGTGCTTAAGTATTTTGGGATT 58.986 37.500 4.02 0.00 0.00 3.01
207 208 6.181908 ACCGTGCTTAAGTATTTTGGGATTA 58.818 36.000 4.02 0.00 0.00 1.75
208 209 6.831868 ACCGTGCTTAAGTATTTTGGGATTAT 59.168 34.615 4.02 0.00 0.00 1.28
209 210 7.340999 ACCGTGCTTAAGTATTTTGGGATTATT 59.659 33.333 4.02 0.00 0.00 1.40
210 211 8.194769 CCGTGCTTAAGTATTTTGGGATTATTT 58.805 33.333 4.02 0.00 0.00 1.40
211 212 9.019764 CGTGCTTAAGTATTTTGGGATTATTTG 57.980 33.333 4.02 0.00 0.00 2.32
212 213 9.313118 GTGCTTAAGTATTTTGGGATTATTTGG 57.687 33.333 4.02 0.00 0.00 3.28
213 214 9.041354 TGCTTAAGTATTTTGGGATTATTTGGT 57.959 29.630 4.02 0.00 0.00 3.67
214 215 9.884636 GCTTAAGTATTTTGGGATTATTTGGTT 57.115 29.630 4.02 0.00 0.00 3.67
218 219 8.996024 AGTATTTTGGGATTATTTGGTTTTCG 57.004 30.769 0.00 0.00 0.00 3.46
219 220 8.590204 AGTATTTTGGGATTATTTGGTTTTCGT 58.410 29.630 0.00 0.00 0.00 3.85
220 221 9.857957 GTATTTTGGGATTATTTGGTTTTCGTA 57.142 29.630 0.00 0.00 0.00 3.43
222 223 8.819643 TTTTGGGATTATTTGGTTTTCGTAAG 57.180 30.769 0.00 0.00 0.00 2.34
223 224 6.518208 TGGGATTATTTGGTTTTCGTAAGG 57.482 37.500 0.00 0.00 38.47 2.69
224 225 6.011481 TGGGATTATTTGGTTTTCGTAAGGT 58.989 36.000 0.00 0.00 38.47 3.50
225 226 6.071840 TGGGATTATTTGGTTTTCGTAAGGTG 60.072 38.462 0.00 0.00 38.47 4.00
226 227 6.151480 GGGATTATTTGGTTTTCGTAAGGTGA 59.849 38.462 0.00 0.00 38.47 4.02
227 228 7.025365 GGATTATTTGGTTTTCGTAAGGTGAC 58.975 38.462 0.00 0.00 38.47 3.67
242 243 1.892468 GTGACTTACGCACCTAGACG 58.108 55.000 0.00 0.00 0.00 4.18
243 244 0.806868 TGACTTACGCACCTAGACGG 59.193 55.000 0.00 0.00 39.35 4.79
244 245 1.089920 GACTTACGCACCTAGACGGA 58.910 55.000 0.00 0.00 36.31 4.69
245 246 1.063764 GACTTACGCACCTAGACGGAG 59.936 57.143 0.00 0.00 36.31 4.63
246 247 0.381089 CTTACGCACCTAGACGGAGG 59.619 60.000 0.00 0.00 42.89 4.30
247 248 1.033746 TTACGCACCTAGACGGAGGG 61.034 60.000 5.42 0.00 41.36 4.30
248 249 1.913951 TACGCACCTAGACGGAGGGA 61.914 60.000 5.42 0.00 41.36 4.20
249 250 2.482333 CGCACCTAGACGGAGGGAG 61.482 68.421 5.42 0.00 41.36 4.30
250 251 1.380112 GCACCTAGACGGAGGGAGT 60.380 63.158 5.42 0.00 41.36 3.85
251 252 0.106819 GCACCTAGACGGAGGGAGTA 60.107 60.000 5.42 0.00 41.36 2.59
252 253 1.970092 CACCTAGACGGAGGGAGTAG 58.030 60.000 5.42 0.00 41.36 2.57
253 254 1.212441 CACCTAGACGGAGGGAGTAGT 59.788 57.143 5.42 0.00 41.36 2.73
262 263 5.359292 AGACGGAGGGAGTAGTATTTTGTAC 59.641 44.000 0.00 0.00 0.00 2.90
320 321 4.515028 AGAGAAGGCAATCATTCATCCA 57.485 40.909 0.00 0.00 0.00 3.41
325 326 1.068055 GGCAATCATTCATCCATCGCC 60.068 52.381 0.00 0.00 0.00 5.54
330 331 1.072173 TCATTCATCCATCGCCCGAAT 59.928 47.619 0.00 0.00 0.00 3.34
366 370 5.490139 AAGATGAAATGCGTATCTTGGTG 57.510 39.130 2.29 0.00 39.12 4.17
548 833 2.402572 GGCCAAAAGAGAGGAGCGC 61.403 63.158 0.00 0.00 0.00 5.92
562 847 2.127609 GCGCGCAGAATATTCGCC 60.128 61.111 29.10 13.86 45.34 5.54
569 854 1.581934 CAGAATATTCGCCTTCGCCA 58.418 50.000 9.78 0.00 35.26 5.69
571 856 0.232303 GAATATTCGCCTTCGCCACG 59.768 55.000 0.00 0.00 35.26 4.94
1737 2043 2.333225 CCGGAGATCTTCGAGGCG 59.667 66.667 25.31 3.88 0.00 5.52
1878 2204 0.541063 TCCTGAGTAAGCACCGACCA 60.541 55.000 0.00 0.00 0.00 4.02
1953 2280 0.036306 GTTTCTGGATCGGGTGGTGT 59.964 55.000 0.00 0.00 0.00 4.16
2022 2349 1.312815 GGGCTGAAGAAATCGATGGG 58.687 55.000 0.00 0.00 0.00 4.00
2067 2400 3.821600 TCCGCCTGTAGATAGAAGATGTC 59.178 47.826 0.00 0.00 0.00 3.06
2068 2401 3.823873 CCGCCTGTAGATAGAAGATGTCT 59.176 47.826 0.00 0.00 40.71 3.41
2069 2402 4.083003 CCGCCTGTAGATAGAAGATGTCTC 60.083 50.000 0.00 0.00 37.84 3.36
2071 2404 4.830046 GCCTGTAGATAGAAGATGTCTCCA 59.170 45.833 0.00 0.00 37.84 3.86
2072 2405 5.278758 GCCTGTAGATAGAAGATGTCTCCAC 60.279 48.000 0.00 0.00 37.84 4.02
2145 2516 2.432628 CGGTGCCGGAGTTGAGTC 60.433 66.667 5.05 0.00 35.56 3.36
2164 2535 2.097791 GTCCAGTCAGTAGAACTAGCGG 59.902 54.545 0.00 0.00 0.00 5.52
2166 2537 2.159366 CCAGTCAGTAGAACTAGCGGTG 60.159 54.545 0.00 0.00 0.00 4.94
2195 2567 3.394940 TCCGTGATCCTGTAGGTCTAGAT 59.605 47.826 0.00 0.00 36.34 1.98
2236 2608 2.297033 GGAATTGCAGAAGCTTTCACCA 59.703 45.455 0.00 0.00 42.74 4.17
2277 2666 6.701841 TGTGTTTGTTCTCTGAATCTCTGTAC 59.298 38.462 0.00 0.00 0.00 2.90
2387 2795 4.952262 TCAGAAGAATGAAAATGGAGCG 57.048 40.909 0.00 0.00 0.00 5.03
2393 2801 7.330208 CAGAAGAATGAAAATGGAGCGAAAATT 59.670 33.333 0.00 0.00 0.00 1.82
2480 2893 4.702612 TGCTTCCACAACACTCTTACAAAA 59.297 37.500 0.00 0.00 0.00 2.44
2487 2900 5.354234 CACAACACTCTTACAAAAGGACACT 59.646 40.000 0.00 0.00 33.22 3.55
2490 2903 5.298347 ACACTCTTACAAAAGGACACTAGC 58.702 41.667 0.00 0.00 33.22 3.42
2494 2922 5.061179 TCTTACAAAAGGACACTAGCCAAC 58.939 41.667 0.00 0.00 33.22 3.77
2498 2926 3.697619 AAAGGACACTAGCCAACTACC 57.302 47.619 0.00 0.00 0.00 3.18
2503 2931 1.817447 ACACTAGCCAACTACCGAGTC 59.183 52.381 0.00 0.00 33.58 3.36
2508 2936 0.456628 GCCAACTACCGAGTCCTCTC 59.543 60.000 0.00 0.00 33.58 3.20
2514 2942 1.746220 CTACCGAGTCCTCTCCAAGTG 59.254 57.143 0.00 0.00 37.40 3.16
2518 2946 0.972883 GAGTCCTCTCCAAGTGTGCT 59.027 55.000 0.00 0.00 34.87 4.40
2530 2965 4.747540 CAAGTGTGCTTGCTACAATGTA 57.252 40.909 0.00 0.00 44.54 2.29
2533 2968 6.841119 CAAGTGTGCTTGCTACAATGTATTA 58.159 36.000 0.00 0.00 44.54 0.98
2563 2998 1.026718 GGGCTGGAGATTTGGTGACG 61.027 60.000 0.00 0.00 0.00 4.35
2580 3015 2.577059 GGTCTTGCCGTCCGATGA 59.423 61.111 0.00 0.00 0.00 2.92
2646 3087 2.622942 AGATACTAGCAGCAGAGCAGTC 59.377 50.000 0.00 0.00 36.85 3.51
2670 3118 4.644498 CATGGATTTTGGCCTTTTCAGTT 58.356 39.130 3.32 0.00 0.00 3.16
2687 3135 3.630312 TCAGTTACAACTTGCAAAGGTCC 59.370 43.478 0.00 0.00 43.11 4.46
2688 3136 3.632145 CAGTTACAACTTGCAAAGGTCCT 59.368 43.478 0.00 0.00 43.11 3.85
2699 3149 6.553953 TTGCAAAGGTCCTCTATGTATGTA 57.446 37.500 0.00 0.00 0.00 2.29
2700 3150 6.747414 TGCAAAGGTCCTCTATGTATGTAT 57.253 37.500 0.00 0.00 0.00 2.29
2701 3151 6.759272 TGCAAAGGTCCTCTATGTATGTATC 58.241 40.000 0.00 0.00 0.00 2.24
2702 3152 6.166982 GCAAAGGTCCTCTATGTATGTATCC 58.833 44.000 0.00 0.00 0.00 2.59
2703 3153 6.702329 CAAAGGTCCTCTATGTATGTATCCC 58.298 44.000 0.00 0.00 0.00 3.85
2704 3154 4.601084 AGGTCCTCTATGTATGTATCCCG 58.399 47.826 0.00 0.00 0.00 5.14
2705 3155 4.044317 AGGTCCTCTATGTATGTATCCCGT 59.956 45.833 0.00 0.00 0.00 5.28
2706 3156 4.158025 GGTCCTCTATGTATGTATCCCGTG 59.842 50.000 0.00 0.00 0.00 4.94
2707 3157 4.158025 GTCCTCTATGTATGTATCCCGTGG 59.842 50.000 0.00 0.00 0.00 4.94
2708 3158 3.447586 CCTCTATGTATGTATCCCGTGGG 59.552 52.174 0.00 0.00 0.00 4.61
2718 3168 3.349879 TCCCGTGGGATGTTTTTCC 57.650 52.632 2.72 0.00 39.76 3.13
2719 3169 0.774908 TCCCGTGGGATGTTTTTCCT 59.225 50.000 2.72 0.00 39.76 3.36
2720 3170 1.146152 TCCCGTGGGATGTTTTTCCTT 59.854 47.619 2.72 0.00 39.76 3.36
2721 3171 1.967779 CCCGTGGGATGTTTTTCCTTT 59.032 47.619 0.00 0.00 37.50 3.11
2722 3172 2.367241 CCCGTGGGATGTTTTTCCTTTT 59.633 45.455 0.00 0.00 37.50 2.27
2723 3173 3.181459 CCCGTGGGATGTTTTTCCTTTTT 60.181 43.478 0.00 0.00 37.50 1.94
2724 3174 3.807071 CCGTGGGATGTTTTTCCTTTTTG 59.193 43.478 0.00 0.00 35.97 2.44
2725 3175 4.442192 CCGTGGGATGTTTTTCCTTTTTGA 60.442 41.667 0.00 0.00 35.97 2.69
2726 3176 4.744631 CGTGGGATGTTTTTCCTTTTTGAG 59.255 41.667 0.00 0.00 35.97 3.02
2728 3178 4.065088 GGGATGTTTTTCCTTTTTGAGGC 58.935 43.478 0.00 0.00 45.87 4.70
2729 3179 4.444164 GGGATGTTTTTCCTTTTTGAGGCA 60.444 41.667 0.00 0.00 45.87 4.75
2730 3180 5.122519 GGATGTTTTTCCTTTTTGAGGCAA 58.877 37.500 0.00 0.00 45.87 4.52
2731 3181 5.588246 GGATGTTTTTCCTTTTTGAGGCAAA 59.412 36.000 0.00 0.00 45.87 3.68
2732 3182 6.238456 GGATGTTTTTCCTTTTTGAGGCAAAG 60.238 38.462 0.00 0.00 45.87 2.77
2733 3183 4.394610 TGTTTTTCCTTTTTGAGGCAAAGC 59.605 37.500 0.00 0.00 45.87 3.51
2734 3184 3.902881 TTTCCTTTTTGAGGCAAAGCA 57.097 38.095 0.00 0.00 45.87 3.91
2735 3185 3.457610 TTCCTTTTTGAGGCAAAGCAG 57.542 42.857 0.00 0.00 45.87 4.24
2736 3186 2.387757 TCCTTTTTGAGGCAAAGCAGT 58.612 42.857 0.00 0.00 45.87 4.40
2737 3187 2.362077 TCCTTTTTGAGGCAAAGCAGTC 59.638 45.455 0.00 0.00 45.87 3.51
2738 3188 2.546584 CCTTTTTGAGGCAAAGCAGTCC 60.547 50.000 0.00 0.00 39.09 3.85
2739 3189 2.071778 TTTTGAGGCAAAGCAGTCCT 57.928 45.000 0.00 0.00 34.72 3.85
2740 3190 2.071778 TTTGAGGCAAAGCAGTCCTT 57.928 45.000 0.00 0.00 34.51 3.36
2741 3191 2.071778 TTGAGGCAAAGCAGTCCTTT 57.928 45.000 0.00 0.00 44.45 3.11
2742 3192 2.949177 TGAGGCAAAGCAGTCCTTTA 57.051 45.000 0.00 0.00 41.75 1.85
2743 3193 3.439857 TGAGGCAAAGCAGTCCTTTAT 57.560 42.857 0.00 0.00 41.75 1.40
2744 3194 4.568072 TGAGGCAAAGCAGTCCTTTATA 57.432 40.909 0.00 0.00 41.75 0.98
2745 3195 4.917385 TGAGGCAAAGCAGTCCTTTATAA 58.083 39.130 0.00 0.00 41.75 0.98
2746 3196 5.321102 TGAGGCAAAGCAGTCCTTTATAAA 58.679 37.500 0.00 0.00 41.75 1.40
2747 3197 5.951747 TGAGGCAAAGCAGTCCTTTATAAAT 59.048 36.000 0.00 0.00 41.75 1.40
2748 3198 6.437162 TGAGGCAAAGCAGTCCTTTATAAATT 59.563 34.615 0.00 0.00 41.75 1.82
2749 3199 7.613801 TGAGGCAAAGCAGTCCTTTATAAATTA 59.386 33.333 0.00 0.00 41.75 1.40
2750 3200 8.000780 AGGCAAAGCAGTCCTTTATAAATTAG 57.999 34.615 0.00 0.00 41.75 1.73
2751 3201 7.068716 AGGCAAAGCAGTCCTTTATAAATTAGG 59.931 37.037 0.00 0.00 41.75 2.69
2752 3202 6.697455 GCAAAGCAGTCCTTTATAAATTAGGC 59.303 38.462 0.00 0.42 41.75 3.93
2753 3203 7.630513 GCAAAGCAGTCCTTTATAAATTAGGCA 60.631 37.037 0.00 0.00 41.75 4.75
2754 3204 8.416329 CAAAGCAGTCCTTTATAAATTAGGCAT 58.584 33.333 0.00 0.00 41.75 4.40
2755 3205 9.640952 AAAGCAGTCCTTTATAAATTAGGCATA 57.359 29.630 0.00 0.00 41.86 3.14
2756 3206 9.813826 AAGCAGTCCTTTATAAATTAGGCATAT 57.186 29.630 0.00 0.00 0.00 1.78
2757 3207 9.454859 AGCAGTCCTTTATAAATTAGGCATATC 57.545 33.333 0.00 0.00 0.00 1.63
2758 3208 8.391106 GCAGTCCTTTATAAATTAGGCATATCG 58.609 37.037 0.00 0.00 0.00 2.92
2759 3209 8.391106 CAGTCCTTTATAAATTAGGCATATCGC 58.609 37.037 0.00 0.00 41.28 4.58
2769 3219 3.667448 GCATATCGCCTGAGACACA 57.333 52.632 0.00 0.00 32.94 3.72
2770 3220 1.939974 GCATATCGCCTGAGACACAA 58.060 50.000 0.00 0.00 32.94 3.33
2771 3221 2.279741 GCATATCGCCTGAGACACAAA 58.720 47.619 0.00 0.00 32.94 2.83
2772 3222 2.030946 GCATATCGCCTGAGACACAAAC 59.969 50.000 0.00 0.00 32.94 2.93
2773 3223 3.261580 CATATCGCCTGAGACACAAACA 58.738 45.455 0.00 0.00 0.00 2.83
2774 3224 1.800805 ATCGCCTGAGACACAAACAG 58.199 50.000 0.00 0.00 0.00 3.16
2775 3225 0.880278 TCGCCTGAGACACAAACAGC 60.880 55.000 0.00 0.00 0.00 4.40
2776 3226 1.845809 CGCCTGAGACACAAACAGCC 61.846 60.000 0.00 0.00 0.00 4.85
2777 3227 0.819259 GCCTGAGACACAAACAGCCA 60.819 55.000 0.00 0.00 0.00 4.75
2778 3228 0.947244 CCTGAGACACAAACAGCCAC 59.053 55.000 0.00 0.00 0.00 5.01
2779 3229 1.475751 CCTGAGACACAAACAGCCACT 60.476 52.381 0.00 0.00 0.00 4.00
2780 3230 2.292267 CTGAGACACAAACAGCCACTT 58.708 47.619 0.00 0.00 0.00 3.16
2781 3231 2.016318 TGAGACACAAACAGCCACTTG 58.984 47.619 0.00 0.00 0.00 3.16
2782 3232 1.334869 GAGACACAAACAGCCACTTGG 59.665 52.381 0.00 0.00 38.53 3.61
2783 3233 0.385390 GACACAAACAGCCACTTGGG 59.615 55.000 0.00 0.00 40.85 4.12
2784 3234 0.033601 ACACAAACAGCCACTTGGGA 60.034 50.000 0.00 0.00 40.01 4.37
2785 3235 0.385390 CACAAACAGCCACTTGGGAC 59.615 55.000 0.00 0.00 40.01 4.46
2786 3236 1.101049 ACAAACAGCCACTTGGGACG 61.101 55.000 0.00 0.00 40.01 4.79
2787 3237 1.528309 AAACAGCCACTTGGGACGG 60.528 57.895 0.00 0.00 40.01 4.79
2788 3238 2.279037 AAACAGCCACTTGGGACGGT 62.279 55.000 0.00 0.00 40.01 4.83
2789 3239 1.412453 AACAGCCACTTGGGACGGTA 61.412 55.000 0.00 0.00 40.01 4.02
2790 3240 1.375523 CAGCCACTTGGGACGGTAC 60.376 63.158 0.00 0.00 40.01 3.34
2791 3241 1.839747 AGCCACTTGGGACGGTACA 60.840 57.895 0.00 0.00 40.01 2.90
2792 3242 1.198759 AGCCACTTGGGACGGTACAT 61.199 55.000 0.00 0.00 40.01 2.29
2793 3243 0.743345 GCCACTTGGGACGGTACATC 60.743 60.000 0.00 0.00 40.01 3.06
2794 3244 0.459585 CCACTTGGGACGGTACATCG 60.460 60.000 0.00 0.00 40.01 3.84
2795 3245 0.459585 CACTTGGGACGGTACATCGG 60.460 60.000 0.00 0.00 0.00 4.18
2796 3246 0.612732 ACTTGGGACGGTACATCGGA 60.613 55.000 0.00 0.00 0.00 4.55
2797 3247 0.102481 CTTGGGACGGTACATCGGAG 59.898 60.000 0.00 0.00 0.00 4.63
2798 3248 0.612732 TTGGGACGGTACATCGGAGT 60.613 55.000 0.00 0.00 0.00 3.85
2799 3249 0.612732 TGGGACGGTACATCGGAGTT 60.613 55.000 0.00 0.00 0.00 3.01
2800 3250 0.101939 GGGACGGTACATCGGAGTTC 59.898 60.000 0.00 0.00 0.00 3.01
2801 3251 0.101939 GGACGGTACATCGGAGTTCC 59.898 60.000 0.00 0.00 0.00 3.62
2802 3252 0.813184 GACGGTACATCGGAGTTCCA 59.187 55.000 0.00 0.00 35.14 3.53
2803 3253 0.815734 ACGGTACATCGGAGTTCCAG 59.184 55.000 0.00 0.00 35.14 3.86
2804 3254 0.527817 CGGTACATCGGAGTTCCAGC 60.528 60.000 0.00 0.00 35.14 4.85
2805 3255 0.824759 GGTACATCGGAGTTCCAGCT 59.175 55.000 0.00 0.00 35.14 4.24
2806 3256 2.029623 GGTACATCGGAGTTCCAGCTA 58.970 52.381 0.00 0.00 35.14 3.32
2807 3257 2.429610 GGTACATCGGAGTTCCAGCTAA 59.570 50.000 0.00 0.00 35.14 3.09
2808 3258 3.069729 GGTACATCGGAGTTCCAGCTAAT 59.930 47.826 0.00 0.00 35.14 1.73
2809 3259 3.185246 ACATCGGAGTTCCAGCTAATG 57.815 47.619 0.00 0.00 35.14 1.90
2810 3260 1.869767 CATCGGAGTTCCAGCTAATGC 59.130 52.381 0.00 0.00 40.05 3.56
2827 3277 7.914537 GCTAATGCTGTTATTGGATAAACAC 57.085 36.000 0.00 0.00 36.03 3.32
2828 3278 7.479980 GCTAATGCTGTTATTGGATAAACACA 58.520 34.615 0.00 0.00 36.03 3.72
2829 3279 7.973388 GCTAATGCTGTTATTGGATAAACACAA 59.027 33.333 0.00 0.00 36.03 3.33
2830 3280 9.853555 CTAATGCTGTTATTGGATAAACACAAA 57.146 29.630 0.00 0.00 0.00 2.83
2831 3281 8.532977 AATGCTGTTATTGGATAAACACAAAC 57.467 30.769 0.00 0.00 0.00 2.93
2832 3282 6.146216 TGCTGTTATTGGATAAACACAAACG 58.854 36.000 0.00 0.00 0.00 3.60
2833 3283 6.017026 TGCTGTTATTGGATAAACACAAACGA 60.017 34.615 0.00 0.00 0.00 3.85
2834 3284 6.304683 GCTGTTATTGGATAAACACAAACGAC 59.695 38.462 0.00 0.00 0.00 4.34
2835 3285 6.670233 TGTTATTGGATAAACACAAACGACC 58.330 36.000 0.00 0.00 0.00 4.79
2836 3286 6.487331 TGTTATTGGATAAACACAAACGACCT 59.513 34.615 0.00 0.00 0.00 3.85
2837 3287 7.660617 TGTTATTGGATAAACACAAACGACCTA 59.339 33.333 0.00 0.00 0.00 3.08
2838 3288 8.671028 GTTATTGGATAAACACAAACGACCTAT 58.329 33.333 0.00 0.00 0.00 2.57
2839 3289 9.887629 TTATTGGATAAACACAAACGACCTATA 57.112 29.630 0.00 0.00 0.00 1.31
2840 3290 7.837202 TTGGATAAACACAAACGACCTATAG 57.163 36.000 0.00 0.00 0.00 1.31
2841 3291 5.813672 TGGATAAACACAAACGACCTATAGC 59.186 40.000 0.00 0.00 0.00 2.97
2842 3292 6.047231 GGATAAACACAAACGACCTATAGCT 58.953 40.000 0.00 0.00 0.00 3.32
2843 3293 6.018994 GGATAAACACAAACGACCTATAGCTG 60.019 42.308 0.00 0.00 0.00 4.24
2844 3294 2.618053 ACACAAACGACCTATAGCTGC 58.382 47.619 0.00 0.00 0.00 5.25
2845 3295 2.233922 ACACAAACGACCTATAGCTGCT 59.766 45.455 7.57 7.57 0.00 4.24
2846 3296 3.446161 ACACAAACGACCTATAGCTGCTA 59.554 43.478 12.40 12.40 0.00 3.49
2847 3297 4.045104 CACAAACGACCTATAGCTGCTAG 58.955 47.826 15.41 3.97 0.00 3.42
2848 3298 3.700038 ACAAACGACCTATAGCTGCTAGT 59.300 43.478 15.41 7.60 0.00 2.57
2849 3299 4.159879 ACAAACGACCTATAGCTGCTAGTT 59.840 41.667 15.41 9.33 0.00 2.24
2850 3300 4.571372 AACGACCTATAGCTGCTAGTTC 57.429 45.455 15.41 7.37 0.00 3.01
2851 3301 3.552875 ACGACCTATAGCTGCTAGTTCA 58.447 45.455 15.41 0.00 0.00 3.18
2852 3302 4.145807 ACGACCTATAGCTGCTAGTTCAT 58.854 43.478 15.41 1.29 0.00 2.57
2853 3303 4.022762 ACGACCTATAGCTGCTAGTTCATG 60.023 45.833 15.41 6.38 0.00 3.07
2854 3304 4.617067 CGACCTATAGCTGCTAGTTCATGG 60.617 50.000 15.41 11.68 0.00 3.66
2855 3305 3.580458 ACCTATAGCTGCTAGTTCATGGG 59.420 47.826 15.41 12.08 0.00 4.00
2856 3306 2.557920 ATAGCTGCTAGTTCATGGGC 57.442 50.000 15.41 0.00 0.00 5.36
2857 3307 1.500474 TAGCTGCTAGTTCATGGGCT 58.500 50.000 5.02 0.00 0.00 5.19
2858 3308 1.500474 AGCTGCTAGTTCATGGGCTA 58.500 50.000 0.00 0.00 0.00 3.93
2885 3340 4.563166 TCCCGTGGGATGTTGGTA 57.437 55.556 2.72 0.00 39.76 3.25
2931 3386 7.364200 TGTTTGTTCTTAATCACCATTAACCG 58.636 34.615 0.00 0.00 32.13 4.44
3018 3580 0.453390 CTGCCGAAAATGAAGAGCCC 59.547 55.000 0.00 0.00 0.00 5.19
3046 3608 4.792189 CGCTCTACTACCTAACTGAAAACG 59.208 45.833 0.00 0.00 0.00 3.60
3061 3623 4.590226 TGAAAACGCTTTTACTTCCGAAC 58.410 39.130 0.00 0.00 31.94 3.95
3066 3628 4.840911 ACGCTTTTACTTCCGAACTTTTC 58.159 39.130 0.00 0.00 0.00 2.29
3076 3642 4.813296 TCCGAACTTTTCTCTTTGCTTC 57.187 40.909 0.00 0.00 0.00 3.86
3083 3649 5.895928 ACTTTTCTCTTTGCTTCAACTTCC 58.104 37.500 0.00 0.00 0.00 3.46
3096 3662 3.211045 TCAACTTCCGAAACTGAAAGGG 58.789 45.455 0.00 0.00 39.30 3.95
3144 3713 2.320587 CCACACCACTTGCTCGCTC 61.321 63.158 0.00 0.00 0.00 5.03
3158 3768 0.108472 TCGCTCATCTTCACAGGCAG 60.108 55.000 0.00 0.00 0.00 4.85
3169 3779 0.963856 CACAGGCAGGCACATGATGT 60.964 55.000 0.00 0.00 0.00 3.06
3203 3813 1.107114 CCGATCCCGCTATCTGCTAT 58.893 55.000 0.00 0.00 40.11 2.97
3239 3850 1.730487 CCGAGAGAGATGGTCACGG 59.270 63.158 0.00 0.00 34.26 4.94
3363 3975 3.763931 CCATGGTTGGAGGGAAACA 57.236 52.632 2.57 0.00 46.92 2.83
3364 3976 2.236489 CCATGGTTGGAGGGAAACAT 57.764 50.000 2.57 0.00 46.92 2.71
3365 3977 1.826720 CCATGGTTGGAGGGAAACATG 59.173 52.381 2.57 0.00 46.47 3.21
3366 3978 1.205417 CATGGTTGGAGGGAAACATGC 59.795 52.381 0.00 0.00 42.54 4.06
3367 3979 0.541764 TGGTTGGAGGGAAACATGCC 60.542 55.000 0.00 0.00 0.00 4.40
3368 3980 0.541764 GGTTGGAGGGAAACATGCCA 60.542 55.000 0.00 0.00 0.00 4.92
3369 3981 0.890683 GTTGGAGGGAAACATGCCAG 59.109 55.000 0.00 0.00 0.00 4.85
3370 3982 0.899717 TTGGAGGGAAACATGCCAGC 60.900 55.000 0.00 0.00 0.00 4.85
3371 3983 2.054453 GGAGGGAAACATGCCAGCC 61.054 63.158 0.00 0.00 0.00 4.85
3372 3984 1.304381 GAGGGAAACATGCCAGCCA 60.304 57.895 0.00 0.00 0.00 4.75
3373 3985 1.304713 AGGGAAACATGCCAGCCAG 60.305 57.895 0.00 0.00 0.00 4.85
3374 3986 2.575461 GGAAACATGCCAGCCAGC 59.425 61.111 0.00 0.00 0.00 4.85
3375 3987 2.575461 GAAACATGCCAGCCAGCC 59.425 61.111 0.00 0.00 0.00 4.85
3376 3988 2.203669 AAACATGCCAGCCAGCCA 60.204 55.556 0.00 0.00 0.00 4.75
3377 3989 2.221906 GAAACATGCCAGCCAGCCAG 62.222 60.000 0.00 0.00 0.00 4.85
3392 4004 4.853142 CAGCCATGCCCTGCCCAT 62.853 66.667 0.00 0.00 0.00 4.00
3393 4005 4.853142 AGCCATGCCCTGCCCATG 62.853 66.667 0.00 0.00 39.74 3.66
3395 4007 2.836360 CCATGCCCTGCCCATGTC 60.836 66.667 0.00 0.00 38.67 3.06
3396 4008 2.836360 CATGCCCTGCCCATGTCC 60.836 66.667 0.00 0.00 36.26 4.02
3397 4009 3.025599 ATGCCCTGCCCATGTCCT 61.026 61.111 0.00 0.00 0.00 3.85
3398 4010 2.629498 ATGCCCTGCCCATGTCCTT 61.629 57.895 0.00 0.00 0.00 3.36
3399 4011 2.037847 GCCCTGCCCATGTCCTTT 59.962 61.111 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.167398 TTTCCTCTCCGCCTTGGTCG 62.167 60.000 0.00 0.00 39.52 4.79
3 4 0.250770 GTTTTCCTCTCCGCCTTGGT 60.251 55.000 0.00 0.00 39.52 3.67
4 5 1.298859 CGTTTTCCTCTCCGCCTTGG 61.299 60.000 0.00 0.00 40.09 3.61
5 6 0.320421 TCGTTTTCCTCTCCGCCTTG 60.320 55.000 0.00 0.00 0.00 3.61
6 7 0.037232 CTCGTTTTCCTCTCCGCCTT 60.037 55.000 0.00 0.00 0.00 4.35
7 8 0.898789 TCTCGTTTTCCTCTCCGCCT 60.899 55.000 0.00 0.00 0.00 5.52
8 9 0.037605 TTCTCGTTTTCCTCTCCGCC 60.038 55.000 0.00 0.00 0.00 6.13
9 10 1.792006 TTTCTCGTTTTCCTCTCCGC 58.208 50.000 0.00 0.00 0.00 5.54
10 11 3.391049 AGTTTTCTCGTTTTCCTCTCCG 58.609 45.455 0.00 0.00 0.00 4.63
11 12 6.856135 TTAAGTTTTCTCGTTTTCCTCTCC 57.144 37.500 0.00 0.00 0.00 3.71
12 13 7.862648 ACATTAAGTTTTCTCGTTTTCCTCTC 58.137 34.615 0.00 0.00 0.00 3.20
13 14 7.715686 AGACATTAAGTTTTCTCGTTTTCCTCT 59.284 33.333 0.00 0.00 0.00 3.69
14 15 7.862648 AGACATTAAGTTTTCTCGTTTTCCTC 58.137 34.615 0.00 0.00 0.00 3.71
15 16 7.803279 AGACATTAAGTTTTCTCGTTTTCCT 57.197 32.000 0.00 0.00 0.00 3.36
16 17 8.851960 AAAGACATTAAGTTTTCTCGTTTTCC 57.148 30.769 0.00 0.00 0.00 3.13
19 20 8.592155 GCAAAAAGACATTAAGTTTTCTCGTTT 58.408 29.630 0.00 0.00 0.00 3.60
20 21 7.973944 AGCAAAAAGACATTAAGTTTTCTCGTT 59.026 29.630 0.00 0.00 0.00 3.85
21 22 7.480810 AGCAAAAAGACATTAAGTTTTCTCGT 58.519 30.769 0.00 0.00 0.00 4.18
22 23 7.914537 AGCAAAAAGACATTAAGTTTTCTCG 57.085 32.000 0.00 0.00 0.00 4.04
42 43 8.159075 ATTGCATGCAACGCTATTAATTAGCAA 61.159 33.333 34.10 6.88 44.07 3.91
43 44 6.735419 ATTGCATGCAACGCTATTAATTAGCA 60.735 34.615 34.10 7.26 44.07 3.49
44 45 5.630680 ATTGCATGCAACGCTATTAATTAGC 59.369 36.000 34.10 0.37 42.40 3.09
45 46 6.857451 TCATTGCATGCAACGCTATTAATTAG 59.143 34.615 34.10 9.98 38.88 1.73
46 47 6.733145 TCATTGCATGCAACGCTATTAATTA 58.267 32.000 34.10 8.87 38.88 1.40
47 48 5.590145 TCATTGCATGCAACGCTATTAATT 58.410 33.333 34.10 12.47 38.88 1.40
48 49 5.185668 TCATTGCATGCAACGCTATTAAT 57.814 34.783 34.10 13.24 38.88 1.40
49 50 4.629251 TCATTGCATGCAACGCTATTAA 57.371 36.364 34.10 10.47 38.88 1.40
50 51 4.096231 AGTTCATTGCATGCAACGCTATTA 59.904 37.500 34.10 11.27 38.88 0.98
51 52 3.119388 AGTTCATTGCATGCAACGCTATT 60.119 39.130 34.10 15.54 38.88 1.73
52 53 2.424601 AGTTCATTGCATGCAACGCTAT 59.575 40.909 34.10 16.31 38.88 2.97
53 54 1.811965 AGTTCATTGCATGCAACGCTA 59.188 42.857 34.10 17.04 38.88 4.26
54 55 0.599558 AGTTCATTGCATGCAACGCT 59.400 45.000 34.10 23.92 38.88 5.07
55 56 2.261037 TAGTTCATTGCATGCAACGC 57.739 45.000 34.10 22.29 38.88 4.84
56 57 4.263677 GTGATTAGTTCATTGCATGCAACG 59.736 41.667 34.10 27.16 38.88 4.10
57 58 5.287752 CAGTGATTAGTTCATTGCATGCAAC 59.712 40.000 34.10 22.33 38.88 4.17
58 59 5.404096 CAGTGATTAGTTCATTGCATGCAA 58.596 37.500 33.57 33.57 35.59 4.08
59 60 4.989044 CAGTGATTAGTTCATTGCATGCA 58.011 39.130 18.46 18.46 35.59 3.96
65 66 6.185852 TGACATGCAGTGATTAGTTCATTG 57.814 37.500 0.00 0.00 43.12 2.82
66 67 6.376299 ACATGACATGCAGTGATTAGTTCATT 59.624 34.615 15.49 0.00 36.54 2.57
67 68 5.884232 ACATGACATGCAGTGATTAGTTCAT 59.116 36.000 15.49 0.00 36.54 2.57
68 69 5.247862 ACATGACATGCAGTGATTAGTTCA 58.752 37.500 15.49 0.00 0.00 3.18
69 70 5.808042 ACATGACATGCAGTGATTAGTTC 57.192 39.130 15.49 0.00 0.00 3.01
70 71 6.384224 CAAACATGACATGCAGTGATTAGTT 58.616 36.000 15.49 0.00 0.00 2.24
71 72 5.106038 CCAAACATGACATGCAGTGATTAGT 60.106 40.000 15.49 0.00 0.00 2.24
72 73 5.106038 ACCAAACATGACATGCAGTGATTAG 60.106 40.000 15.49 1.83 0.00 1.73
73 74 4.766373 ACCAAACATGACATGCAGTGATTA 59.234 37.500 15.49 0.00 0.00 1.75
74 75 3.575256 ACCAAACATGACATGCAGTGATT 59.425 39.130 15.49 0.00 0.00 2.57
75 76 3.159472 ACCAAACATGACATGCAGTGAT 58.841 40.909 15.49 0.00 0.00 3.06
76 77 2.585330 ACCAAACATGACATGCAGTGA 58.415 42.857 15.49 0.00 0.00 3.41
77 78 3.503363 ACTACCAAACATGACATGCAGTG 59.497 43.478 15.49 10.34 0.00 3.66
78 79 3.753272 GACTACCAAACATGACATGCAGT 59.247 43.478 15.49 9.80 0.00 4.40
79 80 4.005650 AGACTACCAAACATGACATGCAG 58.994 43.478 15.49 5.48 0.00 4.41
80 81 4.002982 GAGACTACCAAACATGACATGCA 58.997 43.478 15.49 0.00 0.00 3.96
81 82 4.002982 TGAGACTACCAAACATGACATGC 58.997 43.478 15.49 0.00 0.00 4.06
82 83 5.702670 ACTTGAGACTACCAAACATGACATG 59.297 40.000 14.02 14.02 0.00 3.21
83 84 5.869579 ACTTGAGACTACCAAACATGACAT 58.130 37.500 0.00 0.00 0.00 3.06
84 85 5.163353 TGACTTGAGACTACCAAACATGACA 60.163 40.000 0.00 0.00 0.00 3.58
85 86 5.297547 TGACTTGAGACTACCAAACATGAC 58.702 41.667 0.00 0.00 0.00 3.06
86 87 5.545063 TGACTTGAGACTACCAAACATGA 57.455 39.130 0.00 0.00 0.00 3.07
87 88 6.427853 TCAATGACTTGAGACTACCAAACATG 59.572 38.462 0.00 0.00 36.46 3.21
88 89 6.533730 TCAATGACTTGAGACTACCAAACAT 58.466 36.000 0.00 0.00 36.46 2.71
89 90 5.924356 TCAATGACTTGAGACTACCAAACA 58.076 37.500 0.00 0.00 36.46 2.83
90 91 6.861065 TTCAATGACTTGAGACTACCAAAC 57.139 37.500 0.00 0.00 42.19 2.93
91 92 6.017109 GCTTTCAATGACTTGAGACTACCAAA 60.017 38.462 0.00 0.00 42.19 3.28
92 93 5.470098 GCTTTCAATGACTTGAGACTACCAA 59.530 40.000 0.00 0.00 42.19 3.67
93 94 4.997395 GCTTTCAATGACTTGAGACTACCA 59.003 41.667 0.00 0.00 42.19 3.25
94 95 4.997395 TGCTTTCAATGACTTGAGACTACC 59.003 41.667 0.00 0.00 42.19 3.18
95 96 6.541086 CATGCTTTCAATGACTTGAGACTAC 58.459 40.000 0.00 0.00 42.19 2.73
96 97 5.122869 GCATGCTTTCAATGACTTGAGACTA 59.877 40.000 11.37 0.00 42.19 2.59
97 98 4.082895 GCATGCTTTCAATGACTTGAGACT 60.083 41.667 11.37 0.00 42.19 3.24
98 99 4.164294 GCATGCTTTCAATGACTTGAGAC 58.836 43.478 11.37 0.00 42.19 3.36
99 100 3.822167 TGCATGCTTTCAATGACTTGAGA 59.178 39.130 20.33 0.00 42.19 3.27
100 101 3.918591 GTGCATGCTTTCAATGACTTGAG 59.081 43.478 20.33 0.00 42.19 3.02
101 102 3.609879 CGTGCATGCTTTCAATGACTTGA 60.610 43.478 20.33 0.00 39.62 3.02
102 103 2.659757 CGTGCATGCTTTCAATGACTTG 59.340 45.455 20.33 0.00 0.00 3.16
103 104 2.352030 CCGTGCATGCTTTCAATGACTT 60.352 45.455 20.33 0.00 0.00 3.01
104 105 1.200716 CCGTGCATGCTTTCAATGACT 59.799 47.619 20.33 0.00 0.00 3.41
105 106 1.621107 CCGTGCATGCTTTCAATGAC 58.379 50.000 20.33 4.81 0.00 3.06
106 107 0.109179 GCCGTGCATGCTTTCAATGA 60.109 50.000 20.33 0.00 0.00 2.57
107 108 1.079875 GGCCGTGCATGCTTTCAATG 61.080 55.000 20.33 3.08 0.00 2.82
108 109 1.216178 GGCCGTGCATGCTTTCAAT 59.784 52.632 20.33 0.00 0.00 2.57
109 110 2.650196 GGCCGTGCATGCTTTCAA 59.350 55.556 20.33 0.00 0.00 2.69
110 111 3.372730 GGGCCGTGCATGCTTTCA 61.373 61.111 20.33 0.00 0.00 2.69
111 112 3.372730 TGGGCCGTGCATGCTTTC 61.373 61.111 20.33 8.51 0.00 2.62
112 113 3.683937 GTGGGCCGTGCATGCTTT 61.684 61.111 20.33 0.00 0.00 3.51
113 114 4.972733 TGTGGGCCGTGCATGCTT 62.973 61.111 20.33 0.00 0.00 3.91
114 115 4.746309 ATGTGGGCCGTGCATGCT 62.746 61.111 20.33 0.00 0.00 3.79
115 116 4.197498 GATGTGGGCCGTGCATGC 62.197 66.667 11.82 11.82 0.00 4.06
116 117 2.438975 AGATGTGGGCCGTGCATG 60.439 61.111 11.83 0.00 0.00 4.06
117 118 2.124570 GAGATGTGGGCCGTGCAT 60.125 61.111 0.00 3.14 0.00 3.96
118 119 1.549243 TAAGAGATGTGGGCCGTGCA 61.549 55.000 0.00 0.00 0.00 4.57
119 120 0.179045 ATAAGAGATGTGGGCCGTGC 60.179 55.000 0.00 0.00 0.00 5.34
120 121 1.942657 CAATAAGAGATGTGGGCCGTG 59.057 52.381 0.00 0.00 0.00 4.94
121 122 1.134098 CCAATAAGAGATGTGGGCCGT 60.134 52.381 0.00 0.00 0.00 5.68
122 123 1.134098 ACCAATAAGAGATGTGGGCCG 60.134 52.381 0.00 0.00 35.32 6.13
123 124 2.689983 CAACCAATAAGAGATGTGGGCC 59.310 50.000 0.00 0.00 35.32 5.80
124 125 3.620488 TCAACCAATAAGAGATGTGGGC 58.380 45.455 0.00 0.00 35.32 5.36
125 126 7.000472 ACATATCAACCAATAAGAGATGTGGG 59.000 38.462 0.00 0.00 41.18 4.61
128 129 8.267183 TGTCACATATCAACCAATAAGAGATGT 58.733 33.333 0.00 0.00 42.85 3.06
129 130 8.667076 TGTCACATATCAACCAATAAGAGATG 57.333 34.615 0.00 0.00 37.11 2.90
130 131 9.685276 TTTGTCACATATCAACCAATAAGAGAT 57.315 29.630 0.00 0.00 0.00 2.75
131 132 9.513906 TTTTGTCACATATCAACCAATAAGAGA 57.486 29.630 0.00 0.00 0.00 3.10
132 133 9.559958 GTTTTGTCACATATCAACCAATAAGAG 57.440 33.333 0.00 0.00 0.00 2.85
133 134 9.072375 TGTTTTGTCACATATCAACCAATAAGA 57.928 29.630 0.00 0.00 0.00 2.10
134 135 9.689976 TTGTTTTGTCACATATCAACCAATAAG 57.310 29.630 0.00 0.00 0.00 1.73
135 136 9.689976 CTTGTTTTGTCACATATCAACCAATAA 57.310 29.630 0.00 0.00 0.00 1.40
136 137 9.072375 TCTTGTTTTGTCACATATCAACCAATA 57.928 29.630 0.00 0.00 0.00 1.90
137 138 7.950512 TCTTGTTTTGTCACATATCAACCAAT 58.049 30.769 0.00 0.00 0.00 3.16
138 139 7.340122 TCTTGTTTTGTCACATATCAACCAA 57.660 32.000 0.00 0.00 0.00 3.67
139 140 6.951062 TCTTGTTTTGTCACATATCAACCA 57.049 33.333 0.00 0.00 0.00 3.67
140 141 7.096640 CGTTTCTTGTTTTGTCACATATCAACC 60.097 37.037 0.00 0.00 0.00 3.77
141 142 7.642194 TCGTTTCTTGTTTTGTCACATATCAAC 59.358 33.333 0.00 0.00 0.00 3.18
142 143 7.698628 TCGTTTCTTGTTTTGTCACATATCAA 58.301 30.769 0.00 0.00 0.00 2.57
143 144 7.252965 TCGTTTCTTGTTTTGTCACATATCA 57.747 32.000 0.00 0.00 0.00 2.15
144 145 6.797033 CCTCGTTTCTTGTTTTGTCACATATC 59.203 38.462 0.00 0.00 0.00 1.63
145 146 6.485313 TCCTCGTTTCTTGTTTTGTCACATAT 59.515 34.615 0.00 0.00 0.00 1.78
146 147 5.818336 TCCTCGTTTCTTGTTTTGTCACATA 59.182 36.000 0.00 0.00 0.00 2.29
147 148 4.638421 TCCTCGTTTCTTGTTTTGTCACAT 59.362 37.500 0.00 0.00 0.00 3.21
148 149 4.004314 TCCTCGTTTCTTGTTTTGTCACA 58.996 39.130 0.00 0.00 0.00 3.58
149 150 4.495844 CCTCCTCGTTTCTTGTTTTGTCAC 60.496 45.833 0.00 0.00 0.00 3.67
150 151 3.625764 CCTCCTCGTTTCTTGTTTTGTCA 59.374 43.478 0.00 0.00 0.00 3.58
151 152 3.003378 CCCTCCTCGTTTCTTGTTTTGTC 59.997 47.826 0.00 0.00 0.00 3.18
152 153 2.949644 CCCTCCTCGTTTCTTGTTTTGT 59.050 45.455 0.00 0.00 0.00 2.83
153 154 3.211045 TCCCTCCTCGTTTCTTGTTTTG 58.789 45.455 0.00 0.00 0.00 2.44
154 155 3.118000 ACTCCCTCCTCGTTTCTTGTTTT 60.118 43.478 0.00 0.00 0.00 2.43
155 156 2.438392 ACTCCCTCCTCGTTTCTTGTTT 59.562 45.455 0.00 0.00 0.00 2.83
156 157 2.047830 ACTCCCTCCTCGTTTCTTGTT 58.952 47.619 0.00 0.00 0.00 2.83
157 158 1.718280 ACTCCCTCCTCGTTTCTTGT 58.282 50.000 0.00 0.00 0.00 3.16
158 159 2.841442 AACTCCCTCCTCGTTTCTTG 57.159 50.000 0.00 0.00 0.00 3.02
159 160 4.286291 ACATTAACTCCCTCCTCGTTTCTT 59.714 41.667 0.00 0.00 0.00 2.52
160 161 3.838903 ACATTAACTCCCTCCTCGTTTCT 59.161 43.478 0.00 0.00 0.00 2.52
161 162 4.203654 ACATTAACTCCCTCCTCGTTTC 57.796 45.455 0.00 0.00 0.00 2.78
162 163 4.081254 GGTACATTAACTCCCTCCTCGTTT 60.081 45.833 0.00 0.00 0.00 3.60
163 164 3.450096 GGTACATTAACTCCCTCCTCGTT 59.550 47.826 0.00 0.00 0.00 3.85
164 165 3.029570 GGTACATTAACTCCCTCCTCGT 58.970 50.000 0.00 0.00 0.00 4.18
165 166 2.034305 CGGTACATTAACTCCCTCCTCG 59.966 54.545 0.00 0.00 0.00 4.63
166 167 3.029570 ACGGTACATTAACTCCCTCCTC 58.970 50.000 0.00 0.00 0.00 3.71
167 168 2.764572 CACGGTACATTAACTCCCTCCT 59.235 50.000 0.00 0.00 0.00 3.69
168 169 2.740904 GCACGGTACATTAACTCCCTCC 60.741 54.545 0.00 0.00 0.00 4.30
169 170 2.167900 AGCACGGTACATTAACTCCCTC 59.832 50.000 0.00 0.00 0.00 4.30
170 171 2.185387 AGCACGGTACATTAACTCCCT 58.815 47.619 0.00 0.00 0.00 4.20
171 172 2.685850 AGCACGGTACATTAACTCCC 57.314 50.000 0.00 0.00 0.00 4.30
172 173 5.173664 ACTTAAGCACGGTACATTAACTCC 58.826 41.667 1.29 0.00 0.00 3.85
173 174 7.998753 ATACTTAAGCACGGTACATTAACTC 57.001 36.000 1.29 0.00 0.00 3.01
174 175 8.782339 AAATACTTAAGCACGGTACATTAACT 57.218 30.769 1.29 0.00 0.00 2.24
175 176 9.269415 CAAAATACTTAAGCACGGTACATTAAC 57.731 33.333 1.29 0.00 0.00 2.01
176 177 8.452534 CCAAAATACTTAAGCACGGTACATTAA 58.547 33.333 1.29 0.00 0.00 1.40
177 178 7.066043 CCCAAAATACTTAAGCACGGTACATTA 59.934 37.037 1.29 0.00 0.00 1.90
178 179 6.127842 CCCAAAATACTTAAGCACGGTACATT 60.128 38.462 1.29 0.00 0.00 2.71
179 180 5.355910 CCCAAAATACTTAAGCACGGTACAT 59.644 40.000 1.29 0.00 0.00 2.29
180 181 4.696402 CCCAAAATACTTAAGCACGGTACA 59.304 41.667 1.29 0.00 0.00 2.90
181 182 4.937015 TCCCAAAATACTTAAGCACGGTAC 59.063 41.667 1.29 0.00 0.00 3.34
182 183 5.163281 TCCCAAAATACTTAAGCACGGTA 57.837 39.130 1.29 0.00 0.00 4.02
183 184 4.023726 TCCCAAAATACTTAAGCACGGT 57.976 40.909 1.29 0.00 0.00 4.83
184 185 5.576447 AATCCCAAAATACTTAAGCACGG 57.424 39.130 1.29 0.00 0.00 4.94
185 186 9.019764 CAAATAATCCCAAAATACTTAAGCACG 57.980 33.333 1.29 0.00 0.00 5.34
186 187 9.313118 CCAAATAATCCCAAAATACTTAAGCAC 57.687 33.333 1.29 0.00 0.00 4.40
187 188 9.041354 ACCAAATAATCCCAAAATACTTAAGCA 57.959 29.630 1.29 0.00 0.00 3.91
188 189 9.884636 AACCAAATAATCCCAAAATACTTAAGC 57.115 29.630 1.29 0.00 0.00 3.09
192 193 9.430623 CGAAAACCAAATAATCCCAAAATACTT 57.569 29.630 0.00 0.00 0.00 2.24
193 194 8.590204 ACGAAAACCAAATAATCCCAAAATACT 58.410 29.630 0.00 0.00 0.00 2.12
194 195 8.766000 ACGAAAACCAAATAATCCCAAAATAC 57.234 30.769 0.00 0.00 0.00 1.89
196 197 9.430623 CTTACGAAAACCAAATAATCCCAAAAT 57.569 29.630 0.00 0.00 0.00 1.82
197 198 7.873505 CCTTACGAAAACCAAATAATCCCAAAA 59.126 33.333 0.00 0.00 0.00 2.44
198 199 7.015389 ACCTTACGAAAACCAAATAATCCCAAA 59.985 33.333 0.00 0.00 0.00 3.28
199 200 6.494146 ACCTTACGAAAACCAAATAATCCCAA 59.506 34.615 0.00 0.00 0.00 4.12
200 201 6.011481 ACCTTACGAAAACCAAATAATCCCA 58.989 36.000 0.00 0.00 0.00 4.37
201 202 6.151480 TCACCTTACGAAAACCAAATAATCCC 59.849 38.462 0.00 0.00 0.00 3.85
202 203 7.025365 GTCACCTTACGAAAACCAAATAATCC 58.975 38.462 0.00 0.00 0.00 3.01
203 204 7.813645 AGTCACCTTACGAAAACCAAATAATC 58.186 34.615 0.00 0.00 0.00 1.75
204 205 7.754851 AGTCACCTTACGAAAACCAAATAAT 57.245 32.000 0.00 0.00 0.00 1.28
205 206 7.571080 AAGTCACCTTACGAAAACCAAATAA 57.429 32.000 0.00 0.00 0.00 1.40
206 207 8.086851 GTAAGTCACCTTACGAAAACCAAATA 57.913 34.615 0.00 0.00 42.56 1.40
207 208 6.962686 GTAAGTCACCTTACGAAAACCAAAT 58.037 36.000 0.00 0.00 42.56 2.32
208 209 6.362210 GTAAGTCACCTTACGAAAACCAAA 57.638 37.500 0.00 0.00 42.56 3.28
209 210 5.989551 GTAAGTCACCTTACGAAAACCAA 57.010 39.130 0.00 0.00 42.56 3.67
223 224 1.467035 CCGTCTAGGTGCGTAAGTCAC 60.467 57.143 0.00 0.00 41.51 3.67
224 225 0.806868 CCGTCTAGGTGCGTAAGTCA 59.193 55.000 0.00 0.00 35.51 3.41
225 226 1.063764 CTCCGTCTAGGTGCGTAAGTC 59.936 57.143 0.00 0.00 41.99 3.01
226 227 1.093159 CTCCGTCTAGGTGCGTAAGT 58.907 55.000 0.00 0.00 41.99 2.24
227 228 0.381089 CCTCCGTCTAGGTGCGTAAG 59.619 60.000 0.00 0.00 41.99 2.34
228 229 1.033746 CCCTCCGTCTAGGTGCGTAA 61.034 60.000 0.00 0.00 41.99 3.18
229 230 1.452651 CCCTCCGTCTAGGTGCGTA 60.453 63.158 0.00 0.00 41.99 4.42
230 231 2.754658 CCCTCCGTCTAGGTGCGT 60.755 66.667 0.00 0.00 41.99 5.24
231 232 2.439701 TCCCTCCGTCTAGGTGCG 60.440 66.667 0.00 0.00 41.99 5.34
232 233 0.106819 TACTCCCTCCGTCTAGGTGC 60.107 60.000 0.00 0.00 41.99 5.01
233 234 1.212441 ACTACTCCCTCCGTCTAGGTG 59.788 57.143 0.00 0.00 41.99 4.00
234 235 1.594129 ACTACTCCCTCCGTCTAGGT 58.406 55.000 0.00 0.00 41.99 3.08
235 236 4.370094 AATACTACTCCCTCCGTCTAGG 57.630 50.000 0.00 0.00 42.97 3.02
236 237 5.593502 ACAAAATACTACTCCCTCCGTCTAG 59.406 44.000 0.00 0.00 0.00 2.43
237 238 5.513233 ACAAAATACTACTCCCTCCGTCTA 58.487 41.667 0.00 0.00 0.00 2.59
238 239 4.351127 ACAAAATACTACTCCCTCCGTCT 58.649 43.478 0.00 0.00 0.00 4.18
239 240 4.732672 ACAAAATACTACTCCCTCCGTC 57.267 45.455 0.00 0.00 0.00 4.79
240 241 4.096984 CGTACAAAATACTACTCCCTCCGT 59.903 45.833 0.00 0.00 0.00 4.69
241 242 4.096984 ACGTACAAAATACTACTCCCTCCG 59.903 45.833 0.00 0.00 0.00 4.63
242 243 5.346522 CACGTACAAAATACTACTCCCTCC 58.653 45.833 0.00 0.00 0.00 4.30
243 244 4.802563 GCACGTACAAAATACTACTCCCTC 59.197 45.833 0.00 0.00 0.00 4.30
244 245 4.221262 TGCACGTACAAAATACTACTCCCT 59.779 41.667 0.00 0.00 0.00 4.20
245 246 4.497300 TGCACGTACAAAATACTACTCCC 58.503 43.478 0.00 0.00 0.00 4.30
246 247 6.657836 ATTGCACGTACAAAATACTACTCC 57.342 37.500 5.10 0.00 32.27 3.85
247 248 8.013378 ACAAATTGCACGTACAAAATACTACTC 58.987 33.333 5.10 0.00 32.27 2.59
248 249 7.867752 ACAAATTGCACGTACAAAATACTACT 58.132 30.769 5.10 0.00 32.27 2.57
249 250 8.414173 CAACAAATTGCACGTACAAAATACTAC 58.586 33.333 5.10 0.00 32.27 2.73
250 251 8.129840 ACAACAAATTGCACGTACAAAATACTA 58.870 29.630 5.10 0.00 39.66 1.82
251 252 6.975772 ACAACAAATTGCACGTACAAAATACT 59.024 30.769 5.10 0.00 39.66 2.12
252 253 7.043986 TGACAACAAATTGCACGTACAAAATAC 60.044 33.333 5.10 0.00 39.66 1.89
253 254 6.972901 TGACAACAAATTGCACGTACAAAATA 59.027 30.769 5.10 0.00 39.66 1.40
285 286 3.374367 GCCTTCTCTAACCGCCTTTTTAG 59.626 47.826 0.00 0.00 0.00 1.85
291 292 0.912486 ATTGCCTTCTCTAACCGCCT 59.088 50.000 0.00 0.00 0.00 5.52
320 321 1.102154 TTCAATGCAATTCGGGCGAT 58.898 45.000 0.00 0.00 31.22 4.58
325 326 5.903764 TCTTGTTTTTCAATGCAATTCGG 57.096 34.783 0.00 0.00 31.22 4.30
330 331 7.133513 GCATTTCATCTTGTTTTTCAATGCAA 58.866 30.769 8.32 0.00 34.35 4.08
366 370 2.682155 AAATCCGAGGCAGAGAGAAC 57.318 50.000 0.00 0.00 0.00 3.01
421 425 6.098552 GGGGAGAGAGTTATTAGTTACTGCTT 59.901 42.308 0.00 0.00 0.00 3.91
438 709 2.254152 ACTGCTAATGTGGGGAGAGA 57.746 50.000 0.00 0.00 0.00 3.10
471 745 6.705302 TCCATTTGCATGCTTAAATAAACCA 58.295 32.000 20.33 0.00 0.00 3.67
548 833 0.111089 GCGAAGGCGAATATTCTGCG 60.111 55.000 19.05 11.04 40.82 5.18
1668 1974 0.456824 ACAGCGTCATGTAGAGCACG 60.457 55.000 0.00 0.00 35.32 5.34
1719 2025 2.482333 CGCCTCGAAGATCTCCGGT 61.482 63.158 0.09 0.00 33.89 5.28
1878 2204 0.608640 GGTTCAGTGGATCTGTCGGT 59.391 55.000 0.00 0.00 43.97 4.69
1896 2222 4.421479 ACGGCGAGCAGTCTTCGG 62.421 66.667 16.62 0.00 0.00 4.30
1901 2227 3.470567 CAACGACGGCGAGCAGTC 61.471 66.667 22.49 16.34 41.64 3.51
1922 2249 0.734253 CCAGAAACGTCAGCGAGGAG 60.734 60.000 0.00 0.00 42.00 3.69
1953 2280 2.749839 CGGATGCCCTGCGGAAAA 60.750 61.111 0.00 0.00 34.67 2.29
2048 2381 4.830046 TGGAGACATCTTCTATCTACAGGC 59.170 45.833 0.00 0.00 33.22 4.85
2067 2400 4.477975 GAGCCGTCGTCCGTGGAG 62.478 72.222 5.21 0.00 33.66 3.86
2069 2402 4.778415 CAGAGCCGTCGTCCGTGG 62.778 72.222 0.00 0.00 33.66 4.94
2072 2405 4.838486 GAGCAGAGCCGTCGTCCG 62.838 72.222 0.00 0.00 0.00 4.79
2145 2516 2.093106 ACCGCTAGTTCTACTGACTGG 58.907 52.381 0.00 0.00 0.00 4.00
2164 2535 0.613777 AGGATCACGGAAGGAACCAC 59.386 55.000 0.00 0.00 30.21 4.16
2166 2537 0.613777 ACAGGATCACGGAAGGAACC 59.386 55.000 0.00 0.00 0.00 3.62
2195 2567 1.833630 CAGCTTCACCAGAGACCCATA 59.166 52.381 0.00 0.00 0.00 2.74
2236 2608 4.357918 AACACACATTCAGGCTAACTCT 57.642 40.909 0.00 0.00 0.00 3.24
2277 2666 7.827701 TGAACAAGACTATGTACAAGGACTAG 58.172 38.462 0.00 0.00 32.02 2.57
2393 2801 8.140628 AGTGAATTTGTACAAAACATGCACATA 58.859 29.630 23.99 3.27 35.26 2.29
2480 2893 1.183549 CGGTAGTTGGCTAGTGTCCT 58.816 55.000 0.00 0.00 0.00 3.85
2487 2900 1.284198 AGAGGACTCGGTAGTTGGCTA 59.716 52.381 0.00 0.00 35.56 3.93
2490 2903 1.104630 GGAGAGGACTCGGTAGTTGG 58.895 60.000 0.00 0.00 43.44 3.77
2494 2922 1.746220 CACTTGGAGAGGACTCGGTAG 59.254 57.143 0.00 0.00 43.44 3.18
2498 2926 0.389166 GCACACTTGGAGAGGACTCG 60.389 60.000 0.00 0.00 43.44 4.18
2514 2942 7.482654 TCTCATAATACATTGTAGCAAGCAC 57.517 36.000 2.53 0.00 0.00 4.40
2518 2946 7.384932 CCGTGATCTCATAATACATTGTAGCAA 59.615 37.037 2.53 0.00 0.00 3.91
2521 2949 6.813649 CCCCGTGATCTCATAATACATTGTAG 59.186 42.308 2.53 0.00 0.00 2.74
2523 2951 5.551233 CCCCGTGATCTCATAATACATTGT 58.449 41.667 0.00 0.00 0.00 2.71
2525 2960 4.287067 AGCCCCGTGATCTCATAATACATT 59.713 41.667 0.00 0.00 0.00 2.71
2530 2965 1.349026 CCAGCCCCGTGATCTCATAAT 59.651 52.381 0.00 0.00 0.00 1.28
2533 2968 1.383109 TCCAGCCCCGTGATCTCAT 60.383 57.895 0.00 0.00 0.00 2.90
2563 2998 0.462047 ATTCATCGGACGGCAAGACC 60.462 55.000 0.00 0.00 0.00 3.85
2573 3008 1.877443 CAGCATGCATCATTCATCGGA 59.123 47.619 21.98 0.00 0.00 4.55
2574 3009 1.877443 TCAGCATGCATCATTCATCGG 59.123 47.619 21.98 0.00 34.76 4.18
2576 3011 6.852664 TCATTATCAGCATGCATCATTCATC 58.147 36.000 21.98 0.00 34.76 2.92
2577 3012 6.834168 TCATTATCAGCATGCATCATTCAT 57.166 33.333 21.98 3.11 34.76 2.57
2578 3013 6.642707 TTCATTATCAGCATGCATCATTCA 57.357 33.333 21.98 0.00 34.76 2.57
2579 3014 7.312899 TCATTCATTATCAGCATGCATCATTC 58.687 34.615 21.98 0.00 34.76 2.67
2580 3015 7.227049 TCATTCATTATCAGCATGCATCATT 57.773 32.000 21.98 2.14 34.76 2.57
2646 3087 2.001872 GAAAAGGCCAAAATCCATGCG 58.998 47.619 5.01 0.00 0.00 4.73
2670 3118 3.857157 AGAGGACCTTTGCAAGTTGTA 57.143 42.857 4.48 0.00 0.00 2.41
2684 3132 4.158025 CCACGGGATACATACATAGAGGAC 59.842 50.000 0.00 0.00 39.74 3.85
2685 3133 4.341487 CCACGGGATACATACATAGAGGA 58.659 47.826 0.00 0.00 39.74 3.71
2687 3135 4.341487 TCCCACGGGATACATACATAGAG 58.659 47.826 0.00 0.00 39.76 2.43
2688 3136 4.391683 TCCCACGGGATACATACATAGA 57.608 45.455 0.00 0.00 39.76 1.98
2701 3151 1.627864 AAGGAAAAACATCCCACGGG 58.372 50.000 0.00 0.00 40.59 5.28
2702 3152 3.744238 AAAAGGAAAAACATCCCACGG 57.256 42.857 0.00 0.00 40.59 4.94
2703 3153 4.688021 TCAAAAAGGAAAAACATCCCACG 58.312 39.130 0.00 0.00 40.59 4.94
2718 3168 2.363359 AGGACTGCTTTGCCTCAAAAAG 59.637 45.455 0.00 0.00 37.63 2.27
2719 3169 2.387757 AGGACTGCTTTGCCTCAAAAA 58.612 42.857 0.00 0.00 32.75 1.94
2720 3170 2.071778 AGGACTGCTTTGCCTCAAAA 57.928 45.000 0.00 0.00 32.75 2.44
2721 3171 2.071778 AAGGACTGCTTTGCCTCAAA 57.928 45.000 0.00 0.00 0.00 2.69
2722 3172 2.071778 AAAGGACTGCTTTGCCTCAA 57.928 45.000 0.00 0.00 0.00 3.02
2723 3173 2.949177 TAAAGGACTGCTTTGCCTCA 57.051 45.000 5.83 0.00 0.00 3.86
2724 3174 5.897377 TTTATAAAGGACTGCTTTGCCTC 57.103 39.130 5.83 0.00 0.00 4.70
2725 3175 6.857437 AATTTATAAAGGACTGCTTTGCCT 57.143 33.333 5.83 0.00 0.00 4.75
2726 3176 7.203218 CCTAATTTATAAAGGACTGCTTTGCC 58.797 38.462 5.83 0.00 31.64 4.52
2727 3177 6.697455 GCCTAATTTATAAAGGACTGCTTTGC 59.303 38.462 5.83 0.00 31.64 3.68
2728 3178 7.771183 TGCCTAATTTATAAAGGACTGCTTTG 58.229 34.615 5.83 0.00 31.64 2.77
2729 3179 7.954666 TGCCTAATTTATAAAGGACTGCTTT 57.045 32.000 5.96 0.82 31.64 3.51
2730 3180 9.813826 ATATGCCTAATTTATAAAGGACTGCTT 57.186 29.630 5.96 5.10 31.64 3.91
2731 3181 9.454859 GATATGCCTAATTTATAAAGGACTGCT 57.545 33.333 5.96 0.00 31.64 4.24
2732 3182 8.391106 CGATATGCCTAATTTATAAAGGACTGC 58.609 37.037 5.96 4.75 31.64 4.40
2733 3183 8.391106 GCGATATGCCTAATTTATAAAGGACTG 58.609 37.037 5.96 0.00 37.76 3.51
2734 3184 8.494016 GCGATATGCCTAATTTATAAAGGACT 57.506 34.615 5.96 0.00 37.76 3.85
2751 3201 1.939974 TTGTGTCTCAGGCGATATGC 58.060 50.000 0.00 0.00 45.38 3.14
2752 3202 3.261580 TGTTTGTGTCTCAGGCGATATG 58.738 45.455 0.00 0.00 0.00 1.78
2753 3203 3.525537 CTGTTTGTGTCTCAGGCGATAT 58.474 45.455 0.00 0.00 0.00 1.63
2754 3204 2.930887 GCTGTTTGTGTCTCAGGCGATA 60.931 50.000 0.00 0.00 0.00 2.92
2755 3205 1.800805 CTGTTTGTGTCTCAGGCGAT 58.199 50.000 0.00 0.00 0.00 4.58
2756 3206 0.880278 GCTGTTTGTGTCTCAGGCGA 60.880 55.000 0.00 0.00 0.00 5.54
2757 3207 1.571460 GCTGTTTGTGTCTCAGGCG 59.429 57.895 0.00 0.00 0.00 5.52
2758 3208 1.952263 GGCTGTTTGTGTCTCAGGC 59.048 57.895 0.00 0.00 44.66 4.85
2759 3209 0.947244 GTGGCTGTTTGTGTCTCAGG 59.053 55.000 0.00 0.00 0.00 3.86
2760 3210 1.959042 AGTGGCTGTTTGTGTCTCAG 58.041 50.000 0.00 0.00 0.00 3.35
2761 3211 2.016318 CAAGTGGCTGTTTGTGTCTCA 58.984 47.619 0.00 0.00 0.00 3.27
2762 3212 1.334869 CCAAGTGGCTGTTTGTGTCTC 59.665 52.381 0.00 0.00 0.00 3.36
2763 3213 1.392589 CCAAGTGGCTGTTTGTGTCT 58.607 50.000 0.00 0.00 0.00 3.41
2764 3214 0.385390 CCCAAGTGGCTGTTTGTGTC 59.615 55.000 0.00 0.00 0.00 3.67
2765 3215 0.033601 TCCCAAGTGGCTGTTTGTGT 60.034 50.000 0.00 0.00 0.00 3.72
2766 3216 0.385390 GTCCCAAGTGGCTGTTTGTG 59.615 55.000 0.00 0.00 0.00 3.33
2767 3217 1.101049 CGTCCCAAGTGGCTGTTTGT 61.101 55.000 0.00 0.00 0.00 2.83
2768 3218 1.654220 CGTCCCAAGTGGCTGTTTG 59.346 57.895 0.00 0.00 0.00 2.93
2769 3219 1.528309 CCGTCCCAAGTGGCTGTTT 60.528 57.895 0.00 0.00 0.00 2.83
2770 3220 1.412453 TACCGTCCCAAGTGGCTGTT 61.412 55.000 0.00 0.00 0.00 3.16
2771 3221 1.839747 TACCGTCCCAAGTGGCTGT 60.840 57.895 0.00 0.00 0.00 4.40
2772 3222 1.375523 GTACCGTCCCAAGTGGCTG 60.376 63.158 0.00 0.00 0.00 4.85
2773 3223 1.198759 ATGTACCGTCCCAAGTGGCT 61.199 55.000 0.00 0.00 0.00 4.75
2774 3224 0.743345 GATGTACCGTCCCAAGTGGC 60.743 60.000 0.00 0.00 0.00 5.01
2775 3225 0.459585 CGATGTACCGTCCCAAGTGG 60.460 60.000 0.00 0.00 0.00 4.00
2776 3226 0.459585 CCGATGTACCGTCCCAAGTG 60.460 60.000 0.00 0.00 0.00 3.16
2777 3227 0.612732 TCCGATGTACCGTCCCAAGT 60.613 55.000 0.00 0.00 0.00 3.16
2778 3228 0.102481 CTCCGATGTACCGTCCCAAG 59.898 60.000 0.00 0.00 0.00 3.61
2779 3229 0.612732 ACTCCGATGTACCGTCCCAA 60.613 55.000 0.00 0.00 0.00 4.12
2780 3230 0.612732 AACTCCGATGTACCGTCCCA 60.613 55.000 0.00 0.00 0.00 4.37
2781 3231 0.101939 GAACTCCGATGTACCGTCCC 59.898 60.000 0.00 0.00 0.00 4.46
2782 3232 0.101939 GGAACTCCGATGTACCGTCC 59.898 60.000 0.00 0.00 0.00 4.79
2783 3233 0.813184 TGGAACTCCGATGTACCGTC 59.187 55.000 0.00 0.00 39.43 4.79
2784 3234 0.815734 CTGGAACTCCGATGTACCGT 59.184 55.000 0.00 0.00 39.43 4.83
2785 3235 0.527817 GCTGGAACTCCGATGTACCG 60.528 60.000 0.00 0.00 39.43 4.02
2786 3236 0.824759 AGCTGGAACTCCGATGTACC 59.175 55.000 0.00 0.00 39.43 3.34
2787 3237 3.795623 TTAGCTGGAACTCCGATGTAC 57.204 47.619 0.00 0.00 39.43 2.90
2788 3238 3.492656 GCATTAGCTGGAACTCCGATGTA 60.493 47.826 0.00 0.00 39.43 2.29
2789 3239 2.743183 GCATTAGCTGGAACTCCGATGT 60.743 50.000 0.00 0.00 39.43 3.06
2790 3240 1.869767 GCATTAGCTGGAACTCCGATG 59.130 52.381 0.00 0.00 39.43 3.84
2791 3241 2.246719 GCATTAGCTGGAACTCCGAT 57.753 50.000 0.00 0.00 39.43 4.18
2792 3242 3.760693 GCATTAGCTGGAACTCCGA 57.239 52.632 0.00 0.00 39.43 4.55
2803 3253 7.479980 TGTGTTTATCCAATAACAGCATTAGC 58.520 34.615 0.00 0.00 42.56 3.09
2804 3254 9.853555 TTTGTGTTTATCCAATAACAGCATTAG 57.146 29.630 0.00 0.00 0.00 1.73
2805 3255 9.632807 GTTTGTGTTTATCCAATAACAGCATTA 57.367 29.630 0.00 0.00 0.00 1.90
2806 3256 7.328249 CGTTTGTGTTTATCCAATAACAGCATT 59.672 33.333 0.00 0.00 0.00 3.56
2807 3257 6.806249 CGTTTGTGTTTATCCAATAACAGCAT 59.194 34.615 0.00 0.00 0.00 3.79
2808 3258 6.017026 TCGTTTGTGTTTATCCAATAACAGCA 60.017 34.615 0.00 0.00 0.00 4.41
2809 3259 6.304683 GTCGTTTGTGTTTATCCAATAACAGC 59.695 38.462 0.00 0.00 0.00 4.40
2810 3260 6.799925 GGTCGTTTGTGTTTATCCAATAACAG 59.200 38.462 0.00 0.00 0.00 3.16
2811 3261 6.487331 AGGTCGTTTGTGTTTATCCAATAACA 59.513 34.615 0.00 0.00 0.00 2.41
2812 3262 6.905578 AGGTCGTTTGTGTTTATCCAATAAC 58.094 36.000 0.00 0.00 0.00 1.89
2813 3263 8.795842 ATAGGTCGTTTGTGTTTATCCAATAA 57.204 30.769 0.00 0.00 0.00 1.40
2814 3264 9.537192 CTATAGGTCGTTTGTGTTTATCCAATA 57.463 33.333 0.00 0.00 0.00 1.90
2815 3265 7.012044 GCTATAGGTCGTTTGTGTTTATCCAAT 59.988 37.037 1.04 0.00 0.00 3.16
2816 3266 6.314400 GCTATAGGTCGTTTGTGTTTATCCAA 59.686 38.462 1.04 0.00 0.00 3.53
2817 3267 5.813672 GCTATAGGTCGTTTGTGTTTATCCA 59.186 40.000 1.04 0.00 0.00 3.41
2818 3268 6.018994 CAGCTATAGGTCGTTTGTGTTTATCC 60.019 42.308 0.26 0.00 0.00 2.59
2819 3269 6.509677 GCAGCTATAGGTCGTTTGTGTTTATC 60.510 42.308 0.26 0.00 0.00 1.75
2820 3270 5.293569 GCAGCTATAGGTCGTTTGTGTTTAT 59.706 40.000 0.26 0.00 0.00 1.40
2821 3271 4.628333 GCAGCTATAGGTCGTTTGTGTTTA 59.372 41.667 0.26 0.00 0.00 2.01
2822 3272 3.435671 GCAGCTATAGGTCGTTTGTGTTT 59.564 43.478 0.26 0.00 0.00 2.83
2823 3273 3.000727 GCAGCTATAGGTCGTTTGTGTT 58.999 45.455 0.26 0.00 0.00 3.32
2824 3274 2.233922 AGCAGCTATAGGTCGTTTGTGT 59.766 45.455 0.26 0.00 0.00 3.72
2825 3275 2.893637 AGCAGCTATAGGTCGTTTGTG 58.106 47.619 0.26 0.00 0.00 3.33
2826 3276 3.700038 ACTAGCAGCTATAGGTCGTTTGT 59.300 43.478 1.54 1.43 0.00 2.83
2827 3277 4.308899 ACTAGCAGCTATAGGTCGTTTG 57.691 45.455 1.54 0.87 0.00 2.93
2828 3278 4.401519 TGAACTAGCAGCTATAGGTCGTTT 59.598 41.667 15.04 0.26 39.41 3.60
2829 3279 3.952323 TGAACTAGCAGCTATAGGTCGTT 59.048 43.478 15.04 2.34 39.41 3.85
2830 3280 3.552875 TGAACTAGCAGCTATAGGTCGT 58.447 45.455 15.04 0.00 39.41 4.34
2831 3281 4.480541 CATGAACTAGCAGCTATAGGTCG 58.519 47.826 15.04 0.00 39.41 4.79
2832 3282 4.322349 CCCATGAACTAGCAGCTATAGGTC 60.322 50.000 13.76 13.76 37.46 3.85
2833 3283 3.580458 CCCATGAACTAGCAGCTATAGGT 59.420 47.826 1.54 0.00 0.00 3.08
2834 3284 3.618507 GCCCATGAACTAGCAGCTATAGG 60.619 52.174 1.54 0.00 0.00 2.57
2835 3285 3.260380 AGCCCATGAACTAGCAGCTATAG 59.740 47.826 1.54 0.00 0.00 1.31
2836 3286 3.242867 AGCCCATGAACTAGCAGCTATA 58.757 45.455 1.54 0.00 0.00 1.31
2837 3287 2.053244 AGCCCATGAACTAGCAGCTAT 58.947 47.619 1.54 0.00 0.00 2.97
2838 3288 1.500474 AGCCCATGAACTAGCAGCTA 58.500 50.000 1.13 1.13 0.00 3.32
2839 3289 1.500474 TAGCCCATGAACTAGCAGCT 58.500 50.000 0.00 0.00 0.00 4.24
2840 3290 2.332063 TTAGCCCATGAACTAGCAGC 57.668 50.000 0.00 0.00 0.00 5.25
2841 3291 3.813443 ACATTAGCCCATGAACTAGCAG 58.187 45.455 0.00 0.00 0.00 4.24
2842 3292 3.931907 ACATTAGCCCATGAACTAGCA 57.068 42.857 0.00 0.00 0.00 3.49
2843 3293 5.308825 ACATACATTAGCCCATGAACTAGC 58.691 41.667 0.00 0.00 0.00 3.42
2844 3294 7.766278 GGATACATACATTAGCCCATGAACTAG 59.234 40.741 0.00 0.00 0.00 2.57
2845 3295 7.311046 GGGATACATACATTAGCCCATGAACTA 60.311 40.741 0.00 0.00 43.64 2.24
2846 3296 6.476378 GGATACATACATTAGCCCATGAACT 58.524 40.000 0.00 0.00 0.00 3.01
2847 3297 5.648092 GGGATACATACATTAGCCCATGAAC 59.352 44.000 0.00 0.00 43.64 3.18
2848 3298 5.570641 CGGGATACATACATTAGCCCATGAA 60.571 44.000 3.73 0.00 44.30 2.57
2849 3299 4.081142 CGGGATACATACATTAGCCCATGA 60.081 45.833 3.73 0.00 44.30 3.07
2850 3300 4.191544 CGGGATACATACATTAGCCCATG 58.808 47.826 3.73 0.00 44.30 3.66
2851 3301 3.844211 ACGGGATACATACATTAGCCCAT 59.156 43.478 3.73 0.00 44.30 4.00
2852 3302 3.007506 CACGGGATACATACATTAGCCCA 59.992 47.826 3.73 0.00 44.30 5.36
2853 3303 3.596214 CACGGGATACATACATTAGCCC 58.404 50.000 0.00 0.00 41.16 5.19
2854 3304 3.596214 CCACGGGATACATACATTAGCC 58.404 50.000 0.00 0.00 39.74 3.93
2855 3305 3.259876 TCCCACGGGATACATACATTAGC 59.740 47.826 0.00 0.00 39.76 3.09
3018 3580 5.706916 TCAGTTAGGTAGTAGAGCGTTTTG 58.293 41.667 0.00 0.00 0.00 2.44
3046 3608 6.301687 AGAGAAAAGTTCGGAAGTAAAAGC 57.698 37.500 0.00 0.00 34.02 3.51
3061 3623 4.972440 CGGAAGTTGAAGCAAAGAGAAAAG 59.028 41.667 0.00 0.00 0.00 2.27
3066 3628 4.035675 AGTTTCGGAAGTTGAAGCAAAGAG 59.964 41.667 0.00 0.00 0.00 2.85
3076 3642 2.949644 ACCCTTTCAGTTTCGGAAGTTG 59.050 45.455 0.00 0.00 0.00 3.16
3083 3649 3.359654 CGTTTTCACCCTTTCAGTTTCG 58.640 45.455 0.00 0.00 0.00 3.46
3096 3662 0.238553 GGCAGAGGAAGCGTTTTCAC 59.761 55.000 0.00 0.00 0.00 3.18
3144 3713 0.607217 TGTGCCTGCCTGTGAAGATG 60.607 55.000 0.00 0.00 0.00 2.90
3203 3813 3.342627 CGTTGGGCGTTGCTTCGA 61.343 61.111 5.41 0.00 35.54 3.71
3330 3942 1.029681 CATGGACATGGGCATGACTG 58.970 55.000 0.00 0.00 41.20 3.51
3350 3962 0.890683 CTGGCATGTTTCCCTCCAAC 59.109 55.000 0.00 0.00 0.00 3.77
3351 3963 0.899717 GCTGGCATGTTTCCCTCCAA 60.900 55.000 0.00 0.00 0.00 3.53
3352 3964 1.304381 GCTGGCATGTTTCCCTCCA 60.304 57.895 0.00 0.00 0.00 3.86
3353 3965 2.054453 GGCTGGCATGTTTCCCTCC 61.054 63.158 0.00 0.00 0.00 4.30
3354 3966 1.304381 TGGCTGGCATGTTTCCCTC 60.304 57.895 0.00 0.00 0.00 4.30
3355 3967 1.304713 CTGGCTGGCATGTTTCCCT 60.305 57.895 3.74 0.00 0.00 4.20
3356 3968 3.010413 GCTGGCTGGCATGTTTCCC 62.010 63.158 3.74 0.00 0.00 3.97
3357 3969 2.575461 GCTGGCTGGCATGTTTCC 59.425 61.111 3.74 0.00 0.00 3.13
3358 3970 2.277591 TGGCTGGCTGGCATGTTTC 61.278 57.895 16.53 0.00 46.76 2.78
3359 3971 2.203669 TGGCTGGCTGGCATGTTT 60.204 55.556 16.53 0.00 46.76 2.83
3378 3990 2.836360 GACATGGGCAGGGCATGG 60.836 66.667 0.00 0.00 0.00 3.66
3379 3991 2.836360 GGACATGGGCAGGGCATG 60.836 66.667 0.00 0.00 0.00 4.06
3380 3992 2.172229 AAAGGACATGGGCAGGGCAT 62.172 55.000 0.00 0.00 0.00 4.40
3381 3993 2.855770 AAAGGACATGGGCAGGGCA 61.856 57.895 0.00 0.00 0.00 5.36
3382 3994 2.037847 AAAGGACATGGGCAGGGC 59.962 61.111 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.