Multiple sequence alignment - TraesCS6D01G360600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G360600 chr6D 100.000 3428 0 0 1 3428 452118265 452121692 0.000000e+00 6331.0
1 TraesCS6D01G360600 chr6B 90.782 2582 173 42 883 3428 686860230 686862782 0.000000e+00 3389.0
2 TraesCS6D01G360600 chr6B 88.278 273 23 6 381 649 686855605 686855872 5.520000e-83 318.0
3 TraesCS6D01G360600 chr6B 92.486 173 11 1 651 823 686860047 686860217 2.640000e-61 246.0
4 TraesCS6D01G360600 chr6A 94.109 1358 56 9 1561 2914 597893143 597894480 0.000000e+00 2043.0
5 TraesCS6D01G360600 chr6A 88.451 736 59 16 642 1375 597892255 597892966 0.000000e+00 865.0
6 TraesCS6D01G360600 chr6A 90.537 391 32 3 2906 3294 597895509 597895896 2.360000e-141 512.0
7 TraesCS6D01G360600 chr6A 91.579 285 15 3 1292 1567 597892919 597893203 5.370000e-103 385.0
8 TraesCS6D01G360600 chr6A 91.089 101 9 0 3321 3421 597895891 597895991 1.660000e-28 137.0
9 TraesCS6D01G360600 chr5A 86.503 163 19 2 433 592 653299439 653299601 3.520000e-40 176.0
10 TraesCS6D01G360600 chr7D 85.890 163 19 2 434 593 544621605 544621766 1.640000e-38 171.0
11 TraesCS6D01G360600 chr5D 85.207 169 20 4 428 592 114623793 114623960 5.880000e-38 169.0
12 TraesCS6D01G360600 chr5D 85.185 162 20 2 434 592 512215831 512215671 2.740000e-36 163.0
13 TraesCS6D01G360600 chr2D 85.802 162 20 1 434 592 571078958 571079119 5.880000e-38 169.0
14 TraesCS6D01G360600 chr2D 84.848 165 22 1 432 593 291992056 291991892 2.740000e-36 163.0
15 TraesCS6D01G360600 chr7B 84.270 178 20 5 433 606 339685604 339685431 2.120000e-37 167.0
16 TraesCS6D01G360600 chr2A 84.337 166 21 2 430 592 7921054 7920891 1.270000e-34 158.0
17 TraesCS6D01G360600 chr7A 82.883 111 15 2 205 312 56429477 56429368 2.820000e-16 97.1
18 TraesCS6D01G360600 chr3D 81.395 86 9 6 3036 3117 419514793 419514875 2.860000e-06 63.9
19 TraesCS6D01G360600 chr3D 94.286 35 2 0 287 321 606790902 606790936 2.000000e-03 54.7
20 TraesCS6D01G360600 chrUn 92.105 38 3 0 287 324 42506544 42506507 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G360600 chr6D 452118265 452121692 3427 False 6331.0 6331 100.000 1 3428 1 chr6D.!!$F1 3427
1 TraesCS6D01G360600 chr6B 686860047 686862782 2735 False 1817.5 3389 91.634 651 3428 2 chr6B.!!$F2 2777
2 TraesCS6D01G360600 chr6A 597892255 597895991 3736 False 788.4 2043 91.153 642 3421 5 chr6A.!!$F1 2779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
786 787 0.031314 CACTCACACACTCGAGCAGT 59.969 55.0 13.61 8.96 34.67 4.40 F
845 847 0.039074 CTCACACGCTCTTCGGTCTT 60.039 55.0 0.00 0.00 43.86 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2403 2470 0.251832 TCTTCTTCCACTCCTCGGCT 60.252 55.000 0.0 0.0 0.0 5.52 R
2484 2551 3.498661 CCCATCTTATACCCAAGCCCTTC 60.499 52.174 0.0 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.544928 TGATACATGTGTACAACCATCTCT 57.455 37.500 9.11 0.00 32.72 3.10
25 26 6.573434 TGATACATGTGTACAACCATCTCTC 58.427 40.000 9.11 0.00 32.72 3.20
26 27 6.381133 TGATACATGTGTACAACCATCTCTCT 59.619 38.462 9.11 0.00 32.72 3.10
27 28 4.825422 ACATGTGTACAACCATCTCTCTG 58.175 43.478 0.00 0.00 0.00 3.35
28 29 4.528206 ACATGTGTACAACCATCTCTCTGA 59.472 41.667 0.00 0.00 0.00 3.27
29 30 5.188555 ACATGTGTACAACCATCTCTCTGAT 59.811 40.000 0.00 0.00 35.40 2.90
37 38 1.964552 CATCTCTCTGATGTTGGCCC 58.035 55.000 0.00 0.00 45.55 5.80
38 39 1.489649 CATCTCTCTGATGTTGGCCCT 59.510 52.381 0.00 0.00 45.55 5.19
39 40 1.198713 TCTCTCTGATGTTGGCCCTC 58.801 55.000 0.00 0.00 0.00 4.30
40 41 0.907486 CTCTCTGATGTTGGCCCTCA 59.093 55.000 0.00 0.00 0.00 3.86
41 42 1.489649 CTCTCTGATGTTGGCCCTCAT 59.510 52.381 0.00 4.66 0.00 2.90
42 43 2.702478 CTCTCTGATGTTGGCCCTCATA 59.298 50.000 0.00 0.00 0.00 2.15
43 44 2.702478 TCTCTGATGTTGGCCCTCATAG 59.298 50.000 0.00 0.75 0.00 2.23
44 45 2.702478 CTCTGATGTTGGCCCTCATAGA 59.298 50.000 0.00 7.91 0.00 1.98
45 46 2.435805 TCTGATGTTGGCCCTCATAGAC 59.564 50.000 0.00 0.00 0.00 2.59
46 47 2.171237 CTGATGTTGGCCCTCATAGACA 59.829 50.000 0.00 0.00 0.00 3.41
47 48 2.575735 TGATGTTGGCCCTCATAGACAA 59.424 45.455 0.00 0.00 0.00 3.18
48 49 2.489938 TGTTGGCCCTCATAGACAAC 57.510 50.000 0.00 2.52 41.18 3.32
49 50 1.004277 TGTTGGCCCTCATAGACAACC 59.996 52.381 0.00 0.00 40.35 3.77
50 51 1.282157 GTTGGCCCTCATAGACAACCT 59.718 52.381 0.00 0.00 36.37 3.50
51 52 1.204146 TGGCCCTCATAGACAACCTC 58.796 55.000 0.00 0.00 0.00 3.85
52 53 0.470341 GGCCCTCATAGACAACCTCC 59.530 60.000 0.00 0.00 0.00 4.30
53 54 0.105039 GCCCTCATAGACAACCTCCG 59.895 60.000 0.00 0.00 0.00 4.63
54 55 0.753262 CCCTCATAGACAACCTCCGG 59.247 60.000 0.00 0.00 0.00 5.14
55 56 0.105039 CCTCATAGACAACCTCCGGC 59.895 60.000 0.00 0.00 0.00 6.13
56 57 1.115467 CTCATAGACAACCTCCGGCT 58.885 55.000 0.00 0.00 0.00 5.52
57 58 1.067821 CTCATAGACAACCTCCGGCTC 59.932 57.143 0.00 0.00 0.00 4.70
58 59 0.105039 CATAGACAACCTCCGGCTCC 59.895 60.000 0.00 0.00 0.00 4.70
59 60 0.032017 ATAGACAACCTCCGGCTCCT 60.032 55.000 0.00 0.00 0.00 3.69
60 61 0.683504 TAGACAACCTCCGGCTCCTC 60.684 60.000 0.00 0.00 0.00 3.71
61 62 3.358076 GACAACCTCCGGCTCCTCG 62.358 68.421 0.00 0.00 0.00 4.63
62 63 3.068691 CAACCTCCGGCTCCTCGA 61.069 66.667 0.00 0.00 0.00 4.04
63 64 2.042843 AACCTCCGGCTCCTCGAT 60.043 61.111 0.00 0.00 0.00 3.59
64 65 2.427245 AACCTCCGGCTCCTCGATG 61.427 63.158 0.00 0.00 0.00 3.84
65 66 2.519541 CCTCCGGCTCCTCGATGA 60.520 66.667 0.00 0.00 0.00 2.92
66 67 1.905843 CCTCCGGCTCCTCGATGAT 60.906 63.158 0.00 0.00 0.00 2.45
67 68 1.583986 CTCCGGCTCCTCGATGATC 59.416 63.158 0.00 0.00 0.00 2.92
68 69 1.152756 TCCGGCTCCTCGATGATCA 60.153 57.895 0.00 0.00 0.00 2.92
69 70 1.006805 CCGGCTCCTCGATGATCAC 60.007 63.158 0.00 0.00 0.00 3.06
70 71 1.371022 CGGCTCCTCGATGATCACG 60.371 63.158 0.00 4.37 0.00 4.35
71 72 1.663074 GGCTCCTCGATGATCACGC 60.663 63.158 0.00 0.00 0.00 5.34
72 73 1.066422 GCTCCTCGATGATCACGCA 59.934 57.895 0.00 0.00 0.00 5.24
73 74 1.211818 GCTCCTCGATGATCACGCAC 61.212 60.000 0.00 0.00 0.00 5.34
74 75 0.383590 CTCCTCGATGATCACGCACT 59.616 55.000 0.00 0.00 0.00 4.40
75 76 0.817654 TCCTCGATGATCACGCACTT 59.182 50.000 0.00 0.00 0.00 3.16
76 77 0.926155 CCTCGATGATCACGCACTTG 59.074 55.000 0.00 0.00 0.00 3.16
77 78 0.299895 CTCGATGATCACGCACTTGC 59.700 55.000 0.00 0.00 37.78 4.01
78 79 1.083806 TCGATGATCACGCACTTGCC 61.084 55.000 0.00 0.00 37.91 4.52
79 80 1.349627 GATGATCACGCACTTGCCG 59.650 57.895 0.00 0.00 37.91 5.69
80 81 1.079197 ATGATCACGCACTTGCCGA 60.079 52.632 0.00 0.00 37.91 5.54
81 82 0.673333 ATGATCACGCACTTGCCGAA 60.673 50.000 0.00 0.00 37.91 4.30
82 83 0.882484 TGATCACGCACTTGCCGAAA 60.882 50.000 0.00 0.00 37.91 3.46
83 84 0.179215 GATCACGCACTTGCCGAAAG 60.179 55.000 0.00 0.00 42.07 2.62
96 97 1.154035 CGAAAGGCAAATCACCGGC 60.154 57.895 0.00 0.00 0.00 6.13
97 98 1.154035 GAAAGGCAAATCACCGGCG 60.154 57.895 0.00 0.00 0.00 6.46
98 99 1.582610 GAAAGGCAAATCACCGGCGA 61.583 55.000 9.30 0.00 0.00 5.54
99 100 1.586154 AAAGGCAAATCACCGGCGAG 61.586 55.000 9.30 0.06 0.00 5.03
100 101 2.746277 GGCAAATCACCGGCGAGT 60.746 61.111 9.30 0.86 0.00 4.18
101 102 1.448893 GGCAAATCACCGGCGAGTA 60.449 57.895 9.30 0.00 0.00 2.59
102 103 1.429148 GGCAAATCACCGGCGAGTAG 61.429 60.000 9.30 0.00 0.00 2.57
103 104 1.429148 GCAAATCACCGGCGAGTAGG 61.429 60.000 9.30 0.00 0.00 3.18
104 105 1.153429 AAATCACCGGCGAGTAGGC 60.153 57.895 9.30 0.00 42.76 3.93
113 114 4.170062 CGAGTAGGCGAACGGCGA 62.170 66.667 16.62 7.27 44.92 5.54
114 115 2.278013 GAGTAGGCGAACGGCGAG 60.278 66.667 16.62 5.58 44.92 5.03
115 116 4.493747 AGTAGGCGAACGGCGAGC 62.494 66.667 16.62 15.94 44.92 5.03
122 123 3.195698 GAACGGCGAGCCATGGTC 61.196 66.667 16.62 8.82 35.37 4.02
128 129 2.202797 CGAGCCATGGTCGTGGAG 60.203 66.667 21.40 0.39 46.41 3.86
129 130 2.187946 GAGCCATGGTCGTGGAGG 59.812 66.667 14.67 0.00 42.02 4.30
130 131 2.284625 AGCCATGGTCGTGGAGGA 60.285 61.111 14.67 0.00 42.02 3.71
131 132 1.690219 GAGCCATGGTCGTGGAGGAT 61.690 60.000 14.67 0.00 42.02 3.24
132 133 1.224592 GCCATGGTCGTGGAGGATT 59.775 57.895 14.67 0.00 42.02 3.01
133 134 0.815615 GCCATGGTCGTGGAGGATTC 60.816 60.000 14.67 0.00 42.02 2.52
134 135 0.530650 CCATGGTCGTGGAGGATTCG 60.531 60.000 2.57 0.00 42.02 3.34
135 136 0.530650 CATGGTCGTGGAGGATTCGG 60.531 60.000 0.00 0.00 0.00 4.30
136 137 1.686325 ATGGTCGTGGAGGATTCGGG 61.686 60.000 0.00 0.00 0.00 5.14
137 138 2.202892 GTCGTGGAGGATTCGGGC 60.203 66.667 0.00 0.00 0.00 6.13
138 139 2.363795 TCGTGGAGGATTCGGGCT 60.364 61.111 0.00 0.00 0.00 5.19
139 140 1.987855 TCGTGGAGGATTCGGGCTT 60.988 57.895 0.00 0.00 0.00 4.35
140 141 1.521681 CGTGGAGGATTCGGGCTTC 60.522 63.158 0.00 0.00 0.00 3.86
141 142 1.153147 GTGGAGGATTCGGGCTTCC 60.153 63.158 0.00 0.00 32.57 3.46
142 143 1.306997 TGGAGGATTCGGGCTTCCT 60.307 57.895 0.00 0.00 45.12 3.36
143 144 0.031515 TGGAGGATTCGGGCTTCCTA 60.032 55.000 0.00 0.00 42.48 2.94
144 145 0.682292 GGAGGATTCGGGCTTCCTAG 59.318 60.000 0.00 0.00 42.48 3.02
145 146 1.705873 GAGGATTCGGGCTTCCTAGA 58.294 55.000 0.00 0.00 42.48 2.43
146 147 2.040178 GAGGATTCGGGCTTCCTAGAA 58.960 52.381 0.00 0.00 42.48 2.10
147 148 2.036604 GAGGATTCGGGCTTCCTAGAAG 59.963 54.545 0.00 0.00 42.48 2.85
148 149 2.040178 GGATTCGGGCTTCCTAGAAGA 58.960 52.381 8.50 0.00 0.00 2.87
149 150 2.036604 GGATTCGGGCTTCCTAGAAGAG 59.963 54.545 8.50 0.00 0.00 2.85
150 151 0.824759 TTCGGGCTTCCTAGAAGAGC 59.175 55.000 8.50 0.00 35.71 4.09
151 152 0.324368 TCGGGCTTCCTAGAAGAGCA 60.324 55.000 8.50 0.00 38.14 4.26
152 153 0.537188 CGGGCTTCCTAGAAGAGCAA 59.463 55.000 8.50 0.00 38.14 3.91
153 154 1.740718 CGGGCTTCCTAGAAGAGCAAC 60.741 57.143 8.50 5.56 38.14 4.17
154 155 1.646189 GGCTTCCTAGAAGAGCAACG 58.354 55.000 8.50 0.00 38.14 4.10
155 156 1.204941 GGCTTCCTAGAAGAGCAACGA 59.795 52.381 8.50 0.00 38.14 3.85
156 157 2.535331 GCTTCCTAGAAGAGCAACGAG 58.465 52.381 8.50 0.00 36.45 4.18
157 158 2.535331 CTTCCTAGAAGAGCAACGAGC 58.465 52.381 0.00 0.00 46.19 5.03
169 170 3.190337 AACGAGCGTTGTACCAGTC 57.810 52.632 7.54 0.00 36.91 3.51
170 171 0.319297 AACGAGCGTTGTACCAGTCC 60.319 55.000 7.54 0.00 36.91 3.85
171 172 1.287815 CGAGCGTTGTACCAGTCCA 59.712 57.895 0.00 0.00 0.00 4.02
172 173 0.108804 CGAGCGTTGTACCAGTCCAT 60.109 55.000 0.00 0.00 0.00 3.41
173 174 1.359848 GAGCGTTGTACCAGTCCATG 58.640 55.000 0.00 0.00 0.00 3.66
174 175 0.973632 AGCGTTGTACCAGTCCATGA 59.026 50.000 0.00 0.00 0.00 3.07
175 176 1.346395 AGCGTTGTACCAGTCCATGAA 59.654 47.619 0.00 0.00 0.00 2.57
176 177 1.463444 GCGTTGTACCAGTCCATGAAC 59.537 52.381 0.00 0.00 0.00 3.18
177 178 2.761559 CGTTGTACCAGTCCATGAACA 58.238 47.619 0.00 0.00 0.00 3.18
178 179 3.334691 CGTTGTACCAGTCCATGAACAT 58.665 45.455 0.00 0.00 0.00 2.71
179 180 3.370978 CGTTGTACCAGTCCATGAACATC 59.629 47.826 0.00 0.00 0.00 3.06
180 181 3.245518 TGTACCAGTCCATGAACATCG 57.754 47.619 0.00 0.00 0.00 3.84
181 182 1.933853 GTACCAGTCCATGAACATCGC 59.066 52.381 0.00 0.00 0.00 4.58
182 183 0.392998 ACCAGTCCATGAACATCGCC 60.393 55.000 0.00 0.00 0.00 5.54
183 184 0.107508 CCAGTCCATGAACATCGCCT 60.108 55.000 0.00 0.00 0.00 5.52
184 185 1.012086 CAGTCCATGAACATCGCCTG 58.988 55.000 0.00 0.00 0.00 4.85
185 186 0.745845 AGTCCATGAACATCGCCTGC 60.746 55.000 0.00 0.00 0.00 4.85
186 187 1.815003 TCCATGAACATCGCCTGCG 60.815 57.895 4.92 4.92 41.35 5.18
195 196 3.033764 TCGCCTGCGACGTGAAAC 61.034 61.111 10.61 0.00 44.01 2.78
196 197 3.334751 CGCCTGCGACGTGAAACA 61.335 61.111 5.43 0.00 42.83 2.83
197 198 2.248431 GCCTGCGACGTGAAACAC 59.752 61.111 0.00 0.00 35.74 3.32
198 199 2.530497 GCCTGCGACGTGAAACACA 61.530 57.895 0.00 0.00 35.74 3.72
199 200 1.564622 CCTGCGACGTGAAACACAG 59.435 57.895 0.00 0.00 35.74 3.66
200 201 0.874175 CCTGCGACGTGAAACACAGA 60.874 55.000 0.00 0.00 35.74 3.41
201 202 0.229753 CTGCGACGTGAAACACAGAC 59.770 55.000 0.00 0.00 35.74 3.51
202 203 1.198397 GCGACGTGAAACACAGACG 59.802 57.895 0.00 0.00 35.74 4.18
203 204 1.477030 GCGACGTGAAACACAGACGT 61.477 55.000 0.00 0.00 39.86 4.34
204 205 0.497265 CGACGTGAAACACAGACGTC 59.503 55.000 7.70 7.70 46.38 4.34
205 206 1.836383 GACGTGAAACACAGACGTCT 58.164 50.000 13.58 13.58 46.35 4.18
206 207 1.779724 GACGTGAAACACAGACGTCTC 59.220 52.381 16.96 4.01 46.35 3.36
207 208 1.129326 CGTGAAACACAGACGTCTCC 58.871 55.000 16.96 1.64 35.74 3.71
208 209 1.535226 CGTGAAACACAGACGTCTCCA 60.535 52.381 16.96 4.30 35.74 3.86
209 210 1.859080 GTGAAACACAGACGTCTCCAC 59.141 52.381 16.96 12.43 36.32 4.02
210 211 3.668070 GTGAAACACAGACGTCTCCACG 61.668 54.545 16.96 7.13 44.78 4.94
229 230 2.580966 GGGCGACGAAGATTTAGACT 57.419 50.000 0.00 0.00 0.00 3.24
230 231 3.705043 GGGCGACGAAGATTTAGACTA 57.295 47.619 0.00 0.00 0.00 2.59
231 232 3.630101 GGGCGACGAAGATTTAGACTAG 58.370 50.000 0.00 0.00 0.00 2.57
232 233 3.550436 GGGCGACGAAGATTTAGACTAGG 60.550 52.174 0.00 0.00 0.00 3.02
233 234 3.066481 GGCGACGAAGATTTAGACTAGGT 59.934 47.826 0.00 0.00 0.00 3.08
234 235 4.439837 GGCGACGAAGATTTAGACTAGGTT 60.440 45.833 0.00 0.00 0.00 3.50
235 236 5.220931 GGCGACGAAGATTTAGACTAGGTTA 60.221 44.000 0.00 0.00 0.00 2.85
236 237 6.437094 GCGACGAAGATTTAGACTAGGTTAT 58.563 40.000 0.00 0.00 0.00 1.89
237 238 7.308229 GGCGACGAAGATTTAGACTAGGTTATA 60.308 40.741 0.00 0.00 0.00 0.98
238 239 8.072567 GCGACGAAGATTTAGACTAGGTTATAA 58.927 37.037 0.00 0.00 0.00 0.98
239 240 9.941664 CGACGAAGATTTAGACTAGGTTATAAA 57.058 33.333 0.00 0.00 0.00 1.40
248 249 9.846248 TTTAGACTAGGTTATAAAAGTGTCGTC 57.154 33.333 0.00 0.00 0.00 4.20
249 250 6.861144 AGACTAGGTTATAAAAGTGTCGTCC 58.139 40.000 0.00 0.00 0.00 4.79
250 251 5.644644 ACTAGGTTATAAAAGTGTCGTCCG 58.355 41.667 0.00 0.00 0.00 4.79
251 252 3.256558 AGGTTATAAAAGTGTCGTCCGC 58.743 45.455 0.00 0.00 0.00 5.54
252 253 3.056322 AGGTTATAAAAGTGTCGTCCGCT 60.056 43.478 0.00 0.00 34.65 5.52
253 254 3.681417 GGTTATAAAAGTGTCGTCCGCTT 59.319 43.478 0.00 0.00 45.73 4.68
257 258 3.074594 AAGTGTCGTCCGCTTTTGT 57.925 47.368 0.00 0.00 41.05 2.83
258 259 1.375551 AAGTGTCGTCCGCTTTTGTT 58.624 45.000 0.00 0.00 41.05 2.83
259 260 1.375551 AGTGTCGTCCGCTTTTGTTT 58.624 45.000 0.00 0.00 0.00 2.83
260 261 2.553086 AGTGTCGTCCGCTTTTGTTTA 58.447 42.857 0.00 0.00 0.00 2.01
261 262 2.542595 AGTGTCGTCCGCTTTTGTTTAG 59.457 45.455 0.00 0.00 0.00 1.85
262 263 2.286025 GTGTCGTCCGCTTTTGTTTAGT 59.714 45.455 0.00 0.00 0.00 2.24
263 264 2.937799 TGTCGTCCGCTTTTGTTTAGTT 59.062 40.909 0.00 0.00 0.00 2.24
264 265 3.001533 TGTCGTCCGCTTTTGTTTAGTTC 59.998 43.478 0.00 0.00 0.00 3.01
265 266 3.001533 GTCGTCCGCTTTTGTTTAGTTCA 59.998 43.478 0.00 0.00 0.00 3.18
266 267 3.622163 TCGTCCGCTTTTGTTTAGTTCAA 59.378 39.130 0.00 0.00 0.00 2.69
267 268 4.094590 TCGTCCGCTTTTGTTTAGTTCAAA 59.905 37.500 0.00 0.00 33.76 2.69
268 269 4.973663 CGTCCGCTTTTGTTTAGTTCAAAT 59.026 37.500 0.00 0.00 35.25 2.32
269 270 6.018098 TCGTCCGCTTTTGTTTAGTTCAAATA 60.018 34.615 0.00 0.00 35.25 1.40
270 271 6.799925 CGTCCGCTTTTGTTTAGTTCAAATAT 59.200 34.615 0.00 0.00 35.25 1.28
271 272 7.201232 CGTCCGCTTTTGTTTAGTTCAAATATG 60.201 37.037 0.00 0.00 35.25 1.78
272 273 7.593644 GTCCGCTTTTGTTTAGTTCAAATATGT 59.406 33.333 0.00 0.00 35.25 2.29
273 274 8.138712 TCCGCTTTTGTTTAGTTCAAATATGTT 58.861 29.630 0.00 0.00 35.25 2.71
274 275 8.213812 CCGCTTTTGTTTAGTTCAAATATGTTG 58.786 33.333 0.00 0.00 35.25 3.33
275 276 8.963130 CGCTTTTGTTTAGTTCAAATATGTTGA 58.037 29.630 0.00 0.00 35.25 3.18
315 316 9.810545 TTGATCCGGTTTAAATAAAAATCATCC 57.189 29.630 0.00 0.00 0.00 3.51
316 317 8.132362 TGATCCGGTTTAAATAAAAATCATCCG 58.868 33.333 0.00 0.00 31.34 4.18
317 318 7.627298 TCCGGTTTAAATAAAAATCATCCGA 57.373 32.000 0.00 0.00 32.48 4.55
318 319 8.228035 TCCGGTTTAAATAAAAATCATCCGAT 57.772 30.769 0.00 0.00 32.48 4.18
319 320 8.688151 TCCGGTTTAAATAAAAATCATCCGATT 58.312 29.630 0.00 0.00 43.94 3.34
349 350 8.935424 CGAAAATCGTTTGACTTGTTTAAAAG 57.065 30.769 0.00 0.00 34.72 2.27
350 351 7.574128 CGAAAATCGTTTGACTTGTTTAAAAGC 59.426 33.333 0.00 0.00 34.72 3.51
351 352 8.474006 AAAATCGTTTGACTTGTTTAAAAGCT 57.526 26.923 0.00 0.00 0.00 3.74
352 353 8.474006 AAATCGTTTGACTTGTTTAAAAGCTT 57.526 26.923 0.00 0.00 0.00 3.74
353 354 6.862944 TCGTTTGACTTGTTTAAAAGCTTG 57.137 33.333 0.00 0.00 0.00 4.01
354 355 6.613233 TCGTTTGACTTGTTTAAAAGCTTGA 58.387 32.000 0.00 0.00 0.00 3.02
355 356 7.085116 TCGTTTGACTTGTTTAAAAGCTTGAA 58.915 30.769 0.00 0.00 0.00 2.69
356 357 7.595502 TCGTTTGACTTGTTTAAAAGCTTGAAA 59.404 29.630 0.00 0.72 0.00 2.69
357 358 8.379902 CGTTTGACTTGTTTAAAAGCTTGAAAT 58.620 29.630 0.00 0.00 0.00 2.17
366 367 8.555361 TGTTTAAAAGCTTGAAATATTTGTGGC 58.445 29.630 5.17 6.59 0.00 5.01
367 368 8.555361 GTTTAAAAGCTTGAAATATTTGTGGCA 58.445 29.630 5.17 0.00 0.00 4.92
368 369 6.544038 AAAAGCTTGAAATATTTGTGGCAC 57.456 33.333 11.55 11.55 0.00 5.01
369 370 3.836949 AGCTTGAAATATTTGTGGCACG 58.163 40.909 13.77 0.00 0.00 5.34
370 371 2.345341 GCTTGAAATATTTGTGGCACGC 59.655 45.455 13.77 3.15 40.62 5.34
371 372 2.254918 TGAAATATTTGTGGCACGCG 57.745 45.000 13.77 3.53 45.01 6.01
372 373 1.135546 TGAAATATTTGTGGCACGCGG 60.136 47.619 12.47 0.00 45.01 6.46
373 374 0.885196 AAATATTTGTGGCACGCGGT 59.115 45.000 12.47 1.57 45.01 5.68
374 375 0.885196 AATATTTGTGGCACGCGGTT 59.115 45.000 12.47 1.36 45.01 4.44
375 376 0.170116 ATATTTGTGGCACGCGGTTG 59.830 50.000 12.47 0.56 45.01 3.77
376 377 1.857318 TATTTGTGGCACGCGGTTGG 61.857 55.000 12.47 0.00 45.01 3.77
377 378 4.858680 TTGTGGCACGCGGTTGGA 62.859 61.111 12.47 0.00 45.01 3.53
378 379 4.634703 TGTGGCACGCGGTTGGAT 62.635 61.111 12.47 0.00 45.01 3.41
379 380 4.101790 GTGGCACGCGGTTGGATG 62.102 66.667 12.47 0.00 0.00 3.51
380 381 4.321966 TGGCACGCGGTTGGATGA 62.322 61.111 12.47 0.00 0.00 2.92
381 382 3.799755 GGCACGCGGTTGGATGAC 61.800 66.667 12.47 0.00 0.00 3.06
382 383 3.799755 GCACGCGGTTGGATGACC 61.800 66.667 12.47 0.00 36.31 4.02
388 389 2.124695 GGTTGGATGACCGGCTCC 60.125 66.667 0.00 6.34 39.42 4.70
389 390 2.670148 GGTTGGATGACCGGCTCCT 61.670 63.158 16.68 1.55 39.42 3.69
390 391 1.153349 GTTGGATGACCGGCTCCTC 60.153 63.158 16.68 9.39 39.42 3.71
391 392 1.612146 TTGGATGACCGGCTCCTCA 60.612 57.895 16.68 7.33 39.42 3.86
392 393 0.982852 TTGGATGACCGGCTCCTCAT 60.983 55.000 16.68 11.57 39.42 2.90
393 394 0.105709 TGGATGACCGGCTCCTCATA 60.106 55.000 16.68 0.00 39.42 2.15
394 395 1.270907 GGATGACCGGCTCCTCATAT 58.729 55.000 0.00 0.00 0.00 1.78
395 396 1.205893 GGATGACCGGCTCCTCATATC 59.794 57.143 0.00 0.00 0.00 1.63
396 397 1.895798 GATGACCGGCTCCTCATATCA 59.104 52.381 0.00 0.00 0.00 2.15
397 398 1.040646 TGACCGGCTCCTCATATCAC 58.959 55.000 0.00 0.00 0.00 3.06
398 399 0.318762 GACCGGCTCCTCATATCACC 59.681 60.000 0.00 0.00 0.00 4.02
399 400 0.398522 ACCGGCTCCTCATATCACCA 60.399 55.000 0.00 0.00 0.00 4.17
400 401 0.979665 CCGGCTCCTCATATCACCAT 59.020 55.000 0.00 0.00 0.00 3.55
401 402 2.179427 CCGGCTCCTCATATCACCATA 58.821 52.381 0.00 0.00 0.00 2.74
402 403 2.768527 CCGGCTCCTCATATCACCATAT 59.231 50.000 0.00 0.00 0.00 1.78
403 404 3.181471 CCGGCTCCTCATATCACCATATC 60.181 52.174 0.00 0.00 0.00 1.63
404 405 3.181471 CGGCTCCTCATATCACCATATCC 60.181 52.174 0.00 0.00 0.00 2.59
405 406 3.181471 GGCTCCTCATATCACCATATCCG 60.181 52.174 0.00 0.00 0.00 4.18
406 407 3.449018 GCTCCTCATATCACCATATCCGT 59.551 47.826 0.00 0.00 0.00 4.69
407 408 4.081420 GCTCCTCATATCACCATATCCGTT 60.081 45.833 0.00 0.00 0.00 4.44
408 409 5.569630 GCTCCTCATATCACCATATCCGTTT 60.570 44.000 0.00 0.00 0.00 3.60
409 410 6.351033 GCTCCTCATATCACCATATCCGTTTA 60.351 42.308 0.00 0.00 0.00 2.01
410 411 7.547697 TCCTCATATCACCATATCCGTTTAA 57.452 36.000 0.00 0.00 0.00 1.52
411 412 7.611770 TCCTCATATCACCATATCCGTTTAAG 58.388 38.462 0.00 0.00 0.00 1.85
412 413 6.818644 CCTCATATCACCATATCCGTTTAAGG 59.181 42.308 0.00 0.00 0.00 2.69
413 414 6.707290 TCATATCACCATATCCGTTTAAGGG 58.293 40.000 0.00 0.00 0.00 3.95
414 415 6.271391 TCATATCACCATATCCGTTTAAGGGT 59.729 38.462 3.52 0.00 0.00 4.34
415 416 4.411256 TCACCATATCCGTTTAAGGGTC 57.589 45.455 3.52 0.00 0.00 4.46
416 417 3.135167 TCACCATATCCGTTTAAGGGTCC 59.865 47.826 3.52 0.00 0.00 4.46
417 418 2.103601 ACCATATCCGTTTAAGGGTCCG 59.896 50.000 3.52 0.00 0.00 4.79
418 419 2.366266 CCATATCCGTTTAAGGGTCCGA 59.634 50.000 3.52 0.00 0.00 4.55
419 420 3.554337 CCATATCCGTTTAAGGGTCCGAG 60.554 52.174 3.52 0.00 0.00 4.63
420 421 1.856629 ATCCGTTTAAGGGTCCGAGA 58.143 50.000 3.52 0.00 0.00 4.04
421 422 1.856629 TCCGTTTAAGGGTCCGAGAT 58.143 50.000 3.52 0.00 0.00 2.75
422 423 1.479323 TCCGTTTAAGGGTCCGAGATG 59.521 52.381 3.52 0.00 0.00 2.90
423 424 1.287425 CGTTTAAGGGTCCGAGATGC 58.713 55.000 0.00 0.00 0.00 3.91
424 425 1.664873 GTTTAAGGGTCCGAGATGCC 58.335 55.000 0.00 0.00 0.00 4.40
425 426 0.544697 TTTAAGGGTCCGAGATGCCC 59.455 55.000 0.00 0.00 42.64 5.36
428 429 3.965660 GGGTCCGAGATGCCCTAA 58.034 61.111 0.00 0.00 39.31 2.69
429 430 1.446366 GGGTCCGAGATGCCCTAAC 59.554 63.158 0.00 0.00 39.31 2.34
430 431 1.335132 GGGTCCGAGATGCCCTAACA 61.335 60.000 0.00 0.00 39.31 2.41
431 432 0.539986 GGTCCGAGATGCCCTAACAA 59.460 55.000 0.00 0.00 0.00 2.83
432 433 1.473434 GGTCCGAGATGCCCTAACAAG 60.473 57.143 0.00 0.00 0.00 3.16
433 434 1.207329 GTCCGAGATGCCCTAACAAGT 59.793 52.381 0.00 0.00 0.00 3.16
434 435 2.429610 GTCCGAGATGCCCTAACAAGTA 59.570 50.000 0.00 0.00 0.00 2.24
435 436 2.429610 TCCGAGATGCCCTAACAAGTAC 59.570 50.000 0.00 0.00 0.00 2.73
436 437 2.483188 CCGAGATGCCCTAACAAGTACC 60.483 54.545 0.00 0.00 0.00 3.34
437 438 2.483188 CGAGATGCCCTAACAAGTACCC 60.483 54.545 0.00 0.00 0.00 3.69
438 439 1.844497 AGATGCCCTAACAAGTACCCC 59.156 52.381 0.00 0.00 0.00 4.95
439 440 0.924090 ATGCCCTAACAAGTACCCCC 59.076 55.000 0.00 0.00 0.00 5.40
440 441 0.178855 TGCCCTAACAAGTACCCCCT 60.179 55.000 0.00 0.00 0.00 4.79
441 442 0.545171 GCCCTAACAAGTACCCCCTC 59.455 60.000 0.00 0.00 0.00 4.30
442 443 1.210538 CCCTAACAAGTACCCCCTCC 58.789 60.000 0.00 0.00 0.00 4.30
443 444 0.828677 CCTAACAAGTACCCCCTCCG 59.171 60.000 0.00 0.00 0.00 4.63
444 445 1.565067 CTAACAAGTACCCCCTCCGT 58.435 55.000 0.00 0.00 0.00 4.69
445 446 1.904537 CTAACAAGTACCCCCTCCGTT 59.095 52.381 0.00 0.00 0.00 4.44
446 447 1.142936 AACAAGTACCCCCTCCGTTT 58.857 50.000 0.00 0.00 0.00 3.60
447 448 0.689055 ACAAGTACCCCCTCCGTTTC 59.311 55.000 0.00 0.00 0.00 2.78
448 449 0.981943 CAAGTACCCCCTCCGTTTCT 59.018 55.000 0.00 0.00 0.00 2.52
449 450 2.181975 CAAGTACCCCCTCCGTTTCTA 58.818 52.381 0.00 0.00 0.00 2.10
450 451 2.568509 CAAGTACCCCCTCCGTTTCTAA 59.431 50.000 0.00 0.00 0.00 2.10
451 452 2.906568 AGTACCCCCTCCGTTTCTAAA 58.093 47.619 0.00 0.00 0.00 1.85
452 453 3.457836 AGTACCCCCTCCGTTTCTAAAT 58.542 45.455 0.00 0.00 0.00 1.40
453 454 4.623863 AGTACCCCCTCCGTTTCTAAATA 58.376 43.478 0.00 0.00 0.00 1.40
454 455 5.222086 AGTACCCCCTCCGTTTCTAAATAT 58.778 41.667 0.00 0.00 0.00 1.28
455 456 6.384603 AGTACCCCCTCCGTTTCTAAATATA 58.615 40.000 0.00 0.00 0.00 0.86
456 457 6.845975 AGTACCCCCTCCGTTTCTAAATATAA 59.154 38.462 0.00 0.00 0.00 0.98
457 458 6.183810 ACCCCCTCCGTTTCTAAATATAAG 57.816 41.667 0.00 0.00 0.00 1.73
458 459 5.668991 ACCCCCTCCGTTTCTAAATATAAGT 59.331 40.000 0.00 0.00 0.00 2.24
459 460 6.845975 ACCCCCTCCGTTTCTAAATATAAGTA 59.154 38.462 0.00 0.00 0.00 2.24
460 461 7.515166 ACCCCCTCCGTTTCTAAATATAAGTAT 59.485 37.037 0.00 0.00 0.00 2.12
461 462 8.380867 CCCCCTCCGTTTCTAAATATAAGTATT 58.619 37.037 0.00 0.00 31.89 1.89
462 463 9.788889 CCCCTCCGTTTCTAAATATAAGTATTT 57.211 33.333 0.00 0.00 41.92 1.40
536 537 7.692908 GAGTATACATTCACTCTTTCTGCTC 57.307 40.000 5.50 0.00 38.50 4.26
537 538 6.269315 AGTATACATTCACTCTTTCTGCTCG 58.731 40.000 5.50 0.00 0.00 5.03
538 539 2.693069 ACATTCACTCTTTCTGCTCGG 58.307 47.619 0.00 0.00 0.00 4.63
539 540 2.037772 ACATTCACTCTTTCTGCTCGGT 59.962 45.455 0.00 0.00 0.00 4.69
540 541 3.258372 ACATTCACTCTTTCTGCTCGGTA 59.742 43.478 0.00 0.00 0.00 4.02
541 542 4.081420 ACATTCACTCTTTCTGCTCGGTAT 60.081 41.667 0.00 0.00 0.00 2.73
542 543 3.510388 TCACTCTTTCTGCTCGGTATG 57.490 47.619 0.00 0.00 0.00 2.39
543 544 2.826128 TCACTCTTTCTGCTCGGTATGT 59.174 45.455 0.00 0.00 0.00 2.29
544 545 4.014406 TCACTCTTTCTGCTCGGTATGTA 58.986 43.478 0.00 0.00 0.00 2.29
545 546 4.096532 TCACTCTTTCTGCTCGGTATGTAG 59.903 45.833 0.00 0.00 0.00 2.74
546 547 4.096532 CACTCTTTCTGCTCGGTATGTAGA 59.903 45.833 0.00 0.00 0.00 2.59
547 548 4.096682 ACTCTTTCTGCTCGGTATGTAGAC 59.903 45.833 0.00 0.00 0.00 2.59
548 549 3.380637 TCTTTCTGCTCGGTATGTAGACC 59.619 47.826 0.00 0.00 36.00 3.85
549 550 2.430248 TCTGCTCGGTATGTAGACCA 57.570 50.000 0.00 0.00 39.72 4.02
550 551 2.022195 TCTGCTCGGTATGTAGACCAC 58.978 52.381 0.00 0.00 39.72 4.16
551 552 1.749063 CTGCTCGGTATGTAGACCACA 59.251 52.381 0.00 0.00 42.69 4.17
553 554 2.764010 TGCTCGGTATGTAGACCACATT 59.236 45.455 0.00 0.00 46.01 2.71
554 555 3.123804 GCTCGGTATGTAGACCACATTG 58.876 50.000 0.00 0.00 46.01 2.82
555 556 3.717707 CTCGGTATGTAGACCACATTGG 58.282 50.000 0.00 0.00 46.01 3.16
556 557 3.367321 TCGGTATGTAGACCACATTGGA 58.633 45.455 0.00 0.00 46.01 3.53
557 558 3.770388 TCGGTATGTAGACCACATTGGAA 59.230 43.478 0.00 0.00 46.01 3.53
558 559 4.407621 TCGGTATGTAGACCACATTGGAAT 59.592 41.667 0.00 0.00 46.01 3.01
559 560 4.511454 CGGTATGTAGACCACATTGGAATG 59.489 45.833 0.00 0.00 46.01 2.67
560 561 5.437060 GGTATGTAGACCACATTGGAATGT 58.563 41.667 0.00 0.00 46.01 2.71
561 562 6.588204 GGTATGTAGACCACATTGGAATGTA 58.412 40.000 4.71 0.00 46.01 2.29
562 563 7.051623 GGTATGTAGACCACATTGGAATGTAA 58.948 38.462 4.71 0.00 46.01 2.41
563 564 7.554835 GGTATGTAGACCACATTGGAATGTAAA 59.445 37.037 4.71 0.00 46.01 2.01
564 565 8.952278 GTATGTAGACCACATTGGAATGTAAAA 58.048 33.333 4.71 0.00 46.01 1.52
565 566 8.055279 ATGTAGACCACATTGGAATGTAAAAG 57.945 34.615 4.71 0.00 46.01 2.27
566 567 7.888021 ATGTAGACCACATTGGAATGTAAAAGA 59.112 33.333 4.71 0.00 46.01 2.52
589 590 9.907229 AAGACTTATATTTTGGAACTTAGGGAG 57.093 33.333 0.00 0.00 0.00 4.30
590 591 9.059023 AGACTTATATTTTGGAACTTAGGGAGT 57.941 33.333 0.00 0.00 41.47 3.85
594 595 9.603921 TTATATTTTGGAACTTAGGGAGTAACG 57.396 33.333 0.00 0.00 37.72 3.18
595 596 5.549742 TTTTGGAACTTAGGGAGTAACGA 57.450 39.130 0.00 0.00 37.72 3.85
596 597 4.525912 TTGGAACTTAGGGAGTAACGAC 57.474 45.455 0.00 0.00 37.72 4.34
597 598 3.499338 TGGAACTTAGGGAGTAACGACA 58.501 45.455 0.00 0.00 37.72 4.35
598 599 3.896888 TGGAACTTAGGGAGTAACGACAA 59.103 43.478 0.00 0.00 37.72 3.18
599 600 4.344679 TGGAACTTAGGGAGTAACGACAAA 59.655 41.667 0.00 0.00 37.72 2.83
600 601 4.687948 GGAACTTAGGGAGTAACGACAAAC 59.312 45.833 0.00 0.00 37.72 2.93
601 602 5.510349 GGAACTTAGGGAGTAACGACAAACT 60.510 44.000 0.00 0.00 37.72 2.66
602 603 5.131594 ACTTAGGGAGTAACGACAAACTC 57.868 43.478 0.00 0.00 41.16 3.01
603 604 4.320788 ACTTAGGGAGTAACGACAAACTCG 60.321 45.833 0.00 0.00 42.51 4.18
612 613 1.209128 CGACAAACTCGTGAGCTTGT 58.791 50.000 16.21 16.21 46.69 3.16
613 614 1.593006 CGACAAACTCGTGAGCTTGTT 59.407 47.619 17.04 4.59 44.81 2.83
614 615 2.597505 CGACAAACTCGTGAGCTTGTTG 60.598 50.000 17.04 16.15 44.81 3.33
615 616 2.607635 GACAAACTCGTGAGCTTGTTGA 59.392 45.455 17.04 0.00 44.81 3.18
616 617 3.206150 ACAAACTCGTGAGCTTGTTGAT 58.794 40.909 11.75 0.00 42.98 2.57
617 618 3.627577 ACAAACTCGTGAGCTTGTTGATT 59.372 39.130 11.75 0.00 42.98 2.57
618 619 4.096382 ACAAACTCGTGAGCTTGTTGATTT 59.904 37.500 11.75 0.00 42.98 2.17
619 620 3.885484 ACTCGTGAGCTTGTTGATTTG 57.115 42.857 0.00 0.00 0.00 2.32
620 621 3.206150 ACTCGTGAGCTTGTTGATTTGT 58.794 40.909 0.00 0.00 0.00 2.83
621 622 3.248602 ACTCGTGAGCTTGTTGATTTGTC 59.751 43.478 0.00 0.00 0.00 3.18
622 623 2.220824 TCGTGAGCTTGTTGATTTGTCG 59.779 45.455 0.00 0.00 0.00 4.35
623 624 2.032894 CGTGAGCTTGTTGATTTGTCGT 60.033 45.455 0.00 0.00 0.00 4.34
624 625 3.291585 GTGAGCTTGTTGATTTGTCGTG 58.708 45.455 0.00 0.00 0.00 4.35
625 626 2.286950 TGAGCTTGTTGATTTGTCGTGC 60.287 45.455 0.00 0.00 0.00 5.34
626 627 1.949525 AGCTTGTTGATTTGTCGTGCT 59.050 42.857 0.00 0.00 0.00 4.40
627 628 2.046313 GCTTGTTGATTTGTCGTGCTG 58.954 47.619 0.00 0.00 0.00 4.41
628 629 2.653890 CTTGTTGATTTGTCGTGCTGG 58.346 47.619 0.00 0.00 0.00 4.85
629 630 0.310543 TGTTGATTTGTCGTGCTGGC 59.689 50.000 0.00 0.00 0.00 4.85
630 631 0.593128 GTTGATTTGTCGTGCTGGCT 59.407 50.000 0.00 0.00 0.00 4.75
631 632 0.592637 TTGATTTGTCGTGCTGGCTG 59.407 50.000 0.00 0.00 0.00 4.85
632 633 0.250252 TGATTTGTCGTGCTGGCTGA 60.250 50.000 0.00 0.00 0.00 4.26
633 634 0.166814 GATTTGTCGTGCTGGCTGAC 59.833 55.000 10.10 10.10 0.00 3.51
634 635 1.568612 ATTTGTCGTGCTGGCTGACG 61.569 55.000 11.52 3.07 35.40 4.35
635 636 4.662961 TGTCGTGCTGGCTGACGG 62.663 66.667 13.18 0.00 36.23 4.79
674 675 1.595929 GGCAAAAGTCCACCGACGA 60.596 57.895 0.00 0.00 44.28 4.20
702 703 4.147322 CCGCACCAATGTCGACGC 62.147 66.667 11.62 5.93 0.00 5.19
780 781 0.319040 CCACTCCACTCACACACTCG 60.319 60.000 0.00 0.00 0.00 4.18
784 785 1.106944 TCCACTCACACACTCGAGCA 61.107 55.000 13.61 0.00 32.21 4.26
785 786 0.665670 CCACTCACACACTCGAGCAG 60.666 60.000 13.61 8.23 32.21 4.24
786 787 0.031314 CACTCACACACTCGAGCAGT 59.969 55.000 13.61 8.96 34.67 4.40
823 825 2.279069 CGCTCCCCACTCACTCACT 61.279 63.158 0.00 0.00 0.00 3.41
825 827 1.188219 GCTCCCCACTCACTCACTCA 61.188 60.000 0.00 0.00 0.00 3.41
828 830 0.605589 CCCCACTCACTCACTCACTC 59.394 60.000 0.00 0.00 0.00 3.51
829 831 1.332195 CCCACTCACTCACTCACTCA 58.668 55.000 0.00 0.00 0.00 3.41
830 832 1.000283 CCCACTCACTCACTCACTCAC 60.000 57.143 0.00 0.00 0.00 3.51
831 833 1.683385 CCACTCACTCACTCACTCACA 59.317 52.381 0.00 0.00 0.00 3.58
833 835 1.335182 ACTCACTCACTCACTCACACG 59.665 52.381 0.00 0.00 0.00 4.49
835 837 0.031314 CACTCACTCACTCACACGCT 59.969 55.000 0.00 0.00 0.00 5.07
836 838 0.312416 ACTCACTCACTCACACGCTC 59.688 55.000 0.00 0.00 0.00 5.03
837 839 0.595588 CTCACTCACTCACACGCTCT 59.404 55.000 0.00 0.00 0.00 4.09
840 842 0.039978 ACTCACTCACACGCTCTTCG 60.040 55.000 0.00 0.00 45.38 3.79
841 843 0.730834 CTCACTCACACGCTCTTCGG 60.731 60.000 0.00 0.00 43.86 4.30
842 844 1.007271 CACTCACACGCTCTTCGGT 60.007 57.895 0.00 0.00 43.86 4.69
843 845 1.004277 CACTCACACGCTCTTCGGTC 61.004 60.000 0.00 0.00 43.86 4.79
844 846 1.173444 ACTCACACGCTCTTCGGTCT 61.173 55.000 0.00 0.00 43.86 3.85
845 847 0.039074 CTCACACGCTCTTCGGTCTT 60.039 55.000 0.00 0.00 43.86 3.01
846 848 0.039437 TCACACGCTCTTCGGTCTTC 60.039 55.000 0.00 0.00 43.86 2.87
847 849 0.318699 CACACGCTCTTCGGTCTTCA 60.319 55.000 0.00 0.00 43.86 3.02
848 850 0.318784 ACACGCTCTTCGGTCTTCAC 60.319 55.000 0.00 0.00 43.86 3.18
849 851 1.009389 CACGCTCTTCGGTCTTCACC 61.009 60.000 0.00 0.00 43.86 4.02
850 852 1.446272 CGCTCTTCGGTCTTCACCC 60.446 63.158 0.00 0.00 40.01 4.61
851 853 1.671742 GCTCTTCGGTCTTCACCCA 59.328 57.895 0.00 0.00 40.01 4.51
852 854 0.670854 GCTCTTCGGTCTTCACCCAC 60.671 60.000 0.00 0.00 40.01 4.61
853 855 0.679505 CTCTTCGGTCTTCACCCACA 59.320 55.000 0.00 0.00 40.01 4.17
854 856 0.391597 TCTTCGGTCTTCACCCACAC 59.608 55.000 0.00 0.00 40.01 3.82
855 857 0.105964 CTTCGGTCTTCACCCACACA 59.894 55.000 0.00 0.00 40.01 3.72
856 858 0.179067 TTCGGTCTTCACCCACACAC 60.179 55.000 0.00 0.00 40.01 3.82
857 859 1.954146 CGGTCTTCACCCACACACG 60.954 63.158 0.00 0.00 40.01 4.49
858 860 1.597027 GGTCTTCACCCACACACGG 60.597 63.158 0.00 0.00 36.54 4.94
859 861 2.110213 TCTTCACCCACACACGGC 59.890 61.111 0.00 0.00 0.00 5.68
860 862 2.978010 CTTCACCCACACACGGCC 60.978 66.667 0.00 0.00 0.00 6.13
861 863 3.765894 CTTCACCCACACACGGCCA 62.766 63.158 2.24 0.00 0.00 5.36
862 864 4.555709 TCACCCACACACGGCCAC 62.556 66.667 2.24 0.00 0.00 5.01
879 881 2.210013 ACGCCTCACAGCTTCCTCA 61.210 57.895 0.00 0.00 0.00 3.86
880 882 1.739562 CGCCTCACAGCTTCCTCAC 60.740 63.158 0.00 0.00 0.00 3.51
881 883 1.676384 GCCTCACAGCTTCCTCACT 59.324 57.895 0.00 0.00 0.00 3.41
951 961 1.690985 CCCTCCCTCACTCTTCCCC 60.691 68.421 0.00 0.00 0.00 4.81
953 963 1.000486 CTCCCTCACTCTTCCCCGA 60.000 63.158 0.00 0.00 0.00 5.14
954 964 0.397816 CTCCCTCACTCTTCCCCGAT 60.398 60.000 0.00 0.00 0.00 4.18
955 965 0.397254 TCCCTCACTCTTCCCCGATC 60.397 60.000 0.00 0.00 0.00 3.69
956 966 0.397816 CCCTCACTCTTCCCCGATCT 60.398 60.000 0.00 0.00 0.00 2.75
957 967 0.749649 CCTCACTCTTCCCCGATCTG 59.250 60.000 0.00 0.00 0.00 2.90
958 968 0.103937 CTCACTCTTCCCCGATCTGC 59.896 60.000 0.00 0.00 0.00 4.26
959 969 1.144936 CACTCTTCCCCGATCTGCC 59.855 63.158 0.00 0.00 0.00 4.85
960 970 2.419198 CTCTTCCCCGATCTGCCG 59.581 66.667 0.00 0.00 0.00 5.69
961 971 2.363795 TCTTCCCCGATCTGCCGT 60.364 61.111 0.00 0.00 0.00 5.68
1070 1089 1.001764 TCCTCTGCTGCCACATTGG 60.002 57.895 0.00 0.00 41.55 3.16
1210 1232 1.373570 CGGCATCAAGAAGAAGGTCC 58.626 55.000 0.00 0.00 0.00 4.46
1274 1299 2.971452 GGAGGAGTCCACCACGAC 59.029 66.667 19.88 0.00 43.31 4.34
1275 1300 2.567049 GAGGAGTCCACCACGACG 59.433 66.667 12.86 0.00 37.85 5.12
1276 1301 3.628280 GAGGAGTCCACCACGACGC 62.628 68.421 12.86 0.00 37.85 5.19
1289 1314 2.432628 GACGCCGACCAAGGTCAG 60.433 66.667 18.57 8.96 44.77 3.51
1350 1417 1.377333 GAAGCCGGCCACTAAAGCT 60.377 57.895 26.15 0.00 34.64 3.74
1418 1485 3.365265 CACCGCCAAGCCCAAGAC 61.365 66.667 0.00 0.00 0.00 3.01
1420 1487 4.659172 CCGCCAAGCCCAAGACCA 62.659 66.667 0.00 0.00 0.00 4.02
1476 1543 0.909610 AGCCGGTGAAATCTGAGGGA 60.910 55.000 1.90 0.00 0.00 4.20
1540 1607 0.519077 GGCCAAGTCGAGCAAGAAAG 59.481 55.000 0.00 0.00 0.00 2.62
1642 1709 2.987593 CGAATTCGACCGTGAGCG 59.012 61.111 23.29 0.00 43.02 5.03
1812 1879 4.382320 TACCTGTCGGCCGCCAAC 62.382 66.667 23.51 15.04 0.00 3.77
1910 1977 4.737177 GCTGCTGCTGCCCCTCTT 62.737 66.667 19.30 0.00 38.71 2.85
1959 2026 2.831742 CCGTACCTGCCGCTCCTA 60.832 66.667 0.00 0.00 0.00 2.94
2006 2073 0.666913 TACCTCGCCATCTACTTCGC 59.333 55.000 0.00 0.00 0.00 4.70
2271 2338 2.412112 CTCCACTACTACGCCGCC 59.588 66.667 0.00 0.00 0.00 6.13
2467 2534 3.707316 AGGGGCTTATGTGCAAACATTA 58.293 40.909 0.00 0.00 34.04 1.90
2484 2551 8.531530 GCAAACATTAAAATATAGTGAAAGCCG 58.468 33.333 0.00 0.00 0.00 5.52
2620 2687 6.921486 TTGAGTACAGAGTGGGTGTAATAA 57.079 37.500 0.00 0.00 32.23 1.40
2696 2763 2.956132 TGACATTTGGCTCCAGGAAAA 58.044 42.857 0.00 0.00 0.00 2.29
2697 2764 3.303938 TGACATTTGGCTCCAGGAAAAA 58.696 40.909 0.00 0.00 0.00 1.94
2789 2871 8.841444 ATTGCTACATATTCGTCAAATTTCAC 57.159 30.769 0.00 0.00 0.00 3.18
2920 4039 6.369629 TGAAAGTGTCCTTCTAATCCCAAAA 58.630 36.000 0.00 0.00 0.00 2.44
2937 4056 5.960811 TCCCAAAATCAAATGCACCCTTATA 59.039 36.000 0.00 0.00 0.00 0.98
2946 4065 9.816354 ATCAAATGCACCCTTATAAACATTAAC 57.184 29.630 0.00 0.00 0.00 2.01
3397 4532 6.305272 TCTGAAATTCAAGCTCCATAGACT 57.695 37.500 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.070447 AGAGAGATGGTTGTACACATGTATCAT 59.930 37.037 15.84 5.71 32.86 2.45
1 2 6.381133 AGAGAGATGGTTGTACACATGTATCA 59.619 38.462 15.84 1.47 32.86 2.15
2 3 6.699204 CAGAGAGATGGTTGTACACATGTATC 59.301 42.308 0.00 9.09 31.21 2.24
3 4 6.381133 TCAGAGAGATGGTTGTACACATGTAT 59.619 38.462 0.00 0.00 32.54 2.29
4 5 5.714806 TCAGAGAGATGGTTGTACACATGTA 59.285 40.000 0.00 0.00 0.00 2.29
5 6 4.528206 TCAGAGAGATGGTTGTACACATGT 59.472 41.667 3.84 0.00 0.00 3.21
6 7 5.077134 TCAGAGAGATGGTTGTACACATG 57.923 43.478 3.84 0.00 0.00 3.21
7 8 5.946942 ATCAGAGAGATGGTTGTACACAT 57.053 39.130 0.00 0.00 35.06 3.21
19 20 1.767681 GAGGGCCAACATCAGAGAGAT 59.232 52.381 6.18 0.00 37.48 2.75
20 21 1.198713 GAGGGCCAACATCAGAGAGA 58.801 55.000 6.18 0.00 0.00 3.10
21 22 0.907486 TGAGGGCCAACATCAGAGAG 59.093 55.000 6.18 0.00 34.49 3.20
22 23 1.588239 ATGAGGGCCAACATCAGAGA 58.412 50.000 6.18 0.00 43.93 3.10
23 24 3.123157 CTATGAGGGCCAACATCAGAG 57.877 52.381 17.08 9.61 43.93 3.35
24 25 2.435805 GTCTATGAGGGCCAACATCAGA 59.564 50.000 17.08 14.72 43.93 3.27
25 26 2.171237 TGTCTATGAGGGCCAACATCAG 59.829 50.000 17.08 13.22 43.93 2.90
26 27 2.195727 TGTCTATGAGGGCCAACATCA 58.804 47.619 17.08 7.51 44.91 3.07
27 28 2.945668 GTTGTCTATGAGGGCCAACATC 59.054 50.000 17.08 1.69 36.35 3.06
28 29 2.357154 GGTTGTCTATGAGGGCCAACAT 60.357 50.000 17.55 17.55 37.67 2.71
29 30 1.004277 GGTTGTCTATGAGGGCCAACA 59.996 52.381 6.18 6.04 37.67 3.33
30 31 1.282157 AGGTTGTCTATGAGGGCCAAC 59.718 52.381 6.18 0.00 35.75 3.77
31 32 1.559682 GAGGTTGTCTATGAGGGCCAA 59.440 52.381 6.18 0.00 0.00 4.52
32 33 1.204146 GAGGTTGTCTATGAGGGCCA 58.796 55.000 6.18 0.00 0.00 5.36
33 34 0.470341 GGAGGTTGTCTATGAGGGCC 59.530 60.000 0.00 0.00 0.00 5.80
34 35 0.105039 CGGAGGTTGTCTATGAGGGC 59.895 60.000 0.00 0.00 0.00 5.19
49 50 1.175347 TGATCATCGAGGAGCCGGAG 61.175 60.000 13.27 0.00 0.00 4.63
50 51 1.152756 TGATCATCGAGGAGCCGGA 60.153 57.895 13.27 0.00 0.00 5.14
51 52 1.006805 GTGATCATCGAGGAGCCGG 60.007 63.158 13.27 0.00 0.00 6.13
52 53 1.371022 CGTGATCATCGAGGAGCCG 60.371 63.158 13.27 11.77 0.00 5.52
53 54 1.663074 GCGTGATCATCGAGGAGCC 60.663 63.158 13.27 4.16 0.00 4.70
54 55 1.066422 TGCGTGATCATCGAGGAGC 59.934 57.895 8.63 8.63 0.00 4.70
55 56 0.383590 AGTGCGTGATCATCGAGGAG 59.616 55.000 17.91 0.00 0.00 3.69
56 57 0.817654 AAGTGCGTGATCATCGAGGA 59.182 50.000 17.91 0.65 0.00 3.71
57 58 0.926155 CAAGTGCGTGATCATCGAGG 59.074 55.000 17.91 0.00 0.00 4.63
58 59 0.299895 GCAAGTGCGTGATCATCGAG 59.700 55.000 17.91 4.49 0.00 4.04
59 60 1.083806 GGCAAGTGCGTGATCATCGA 61.084 55.000 17.91 0.00 43.26 3.59
60 61 1.349627 GGCAAGTGCGTGATCATCG 59.650 57.895 0.00 6.00 43.26 3.84
61 62 1.083806 TCGGCAAGTGCGTGATCATC 61.084 55.000 0.00 0.00 43.26 2.92
62 63 0.673333 TTCGGCAAGTGCGTGATCAT 60.673 50.000 0.00 0.00 43.26 2.45
63 64 0.882484 TTTCGGCAAGTGCGTGATCA 60.882 50.000 0.00 0.00 43.26 2.92
64 65 0.179215 CTTTCGGCAAGTGCGTGATC 60.179 55.000 0.00 0.00 43.26 2.92
65 66 1.577328 CCTTTCGGCAAGTGCGTGAT 61.577 55.000 0.00 0.00 43.26 3.06
66 67 2.250939 CCTTTCGGCAAGTGCGTGA 61.251 57.895 0.00 0.00 43.26 4.35
67 68 2.252260 CCTTTCGGCAAGTGCGTG 59.748 61.111 0.00 0.00 43.26 5.34
77 78 1.506262 CCGGTGATTTGCCTTTCGG 59.494 57.895 0.00 0.00 0.00 4.30
78 79 1.154035 GCCGGTGATTTGCCTTTCG 60.154 57.895 1.90 0.00 0.00 3.46
79 80 1.154035 CGCCGGTGATTTGCCTTTC 60.154 57.895 10.20 0.00 0.00 2.62
80 81 1.586154 CTCGCCGGTGATTTGCCTTT 61.586 55.000 19.93 0.00 0.00 3.11
81 82 2.033448 TCGCCGGTGATTTGCCTT 59.967 55.556 15.21 0.00 0.00 4.35
82 83 1.895020 TACTCGCCGGTGATTTGCCT 61.895 55.000 19.93 0.00 0.00 4.75
83 84 1.429148 CTACTCGCCGGTGATTTGCC 61.429 60.000 19.93 0.00 0.00 4.52
84 85 1.429148 CCTACTCGCCGGTGATTTGC 61.429 60.000 19.93 0.00 0.00 3.68
85 86 1.429148 GCCTACTCGCCGGTGATTTG 61.429 60.000 19.93 13.80 0.00 2.32
86 87 1.153429 GCCTACTCGCCGGTGATTT 60.153 57.895 19.93 11.29 0.00 2.17
87 88 2.499685 GCCTACTCGCCGGTGATT 59.500 61.111 19.93 16.07 0.00 2.57
88 89 3.900892 CGCCTACTCGCCGGTGAT 61.901 66.667 19.93 11.34 32.59 3.06
90 91 4.124351 TTCGCCTACTCGCCGGTG 62.124 66.667 9.28 9.28 0.00 4.94
91 92 4.125695 GTTCGCCTACTCGCCGGT 62.126 66.667 1.90 0.00 0.00 5.28
96 97 4.170062 TCGCCGTTCGCCTACTCG 62.170 66.667 0.00 0.00 38.27 4.18
97 98 2.278013 CTCGCCGTTCGCCTACTC 60.278 66.667 0.00 0.00 38.27 2.59
98 99 4.493747 GCTCGCCGTTCGCCTACT 62.494 66.667 0.00 0.00 38.27 2.57
105 106 3.195698 GACCATGGCTCGCCGTTC 61.196 66.667 13.04 0.00 39.42 3.95
110 111 4.451150 TCCACGACCATGGCTCGC 62.451 66.667 26.38 9.69 39.85 5.03
111 112 2.202797 CTCCACGACCATGGCTCG 60.203 66.667 25.43 25.43 39.85 5.03
112 113 1.690219 ATCCTCCACGACCATGGCTC 61.690 60.000 13.04 7.94 39.85 4.70
113 114 1.274703 AATCCTCCACGACCATGGCT 61.275 55.000 13.04 0.00 39.85 4.75
114 115 0.815615 GAATCCTCCACGACCATGGC 60.816 60.000 13.04 3.65 39.85 4.40
115 116 0.530650 CGAATCCTCCACGACCATGG 60.531 60.000 11.19 11.19 41.57 3.66
116 117 0.530650 CCGAATCCTCCACGACCATG 60.531 60.000 0.00 0.00 0.00 3.66
117 118 1.686325 CCCGAATCCTCCACGACCAT 61.686 60.000 0.00 0.00 0.00 3.55
118 119 2.355986 CCCGAATCCTCCACGACCA 61.356 63.158 0.00 0.00 0.00 4.02
119 120 2.499685 CCCGAATCCTCCACGACC 59.500 66.667 0.00 0.00 0.00 4.79
120 121 2.202892 GCCCGAATCCTCCACGAC 60.203 66.667 0.00 0.00 0.00 4.34
121 122 1.956629 GAAGCCCGAATCCTCCACGA 61.957 60.000 0.00 0.00 0.00 4.35
122 123 1.521681 GAAGCCCGAATCCTCCACG 60.522 63.158 0.00 0.00 0.00 4.94
123 124 1.153147 GGAAGCCCGAATCCTCCAC 60.153 63.158 0.00 0.00 32.75 4.02
124 125 0.031515 TAGGAAGCCCGAATCCTCCA 60.032 55.000 0.00 0.00 42.44 3.86
125 126 0.682292 CTAGGAAGCCCGAATCCTCC 59.318 60.000 0.00 0.00 42.44 4.30
126 127 1.705873 TCTAGGAAGCCCGAATCCTC 58.294 55.000 0.00 0.00 42.44 3.71
128 129 2.036604 CTCTTCTAGGAAGCCCGAATCC 59.963 54.545 2.74 0.00 37.58 3.01
129 130 2.547007 GCTCTTCTAGGAAGCCCGAATC 60.547 54.545 2.74 0.00 37.58 2.52
130 131 1.414550 GCTCTTCTAGGAAGCCCGAAT 59.585 52.381 2.74 0.00 37.58 3.34
131 132 0.824759 GCTCTTCTAGGAAGCCCGAA 59.175 55.000 2.74 0.00 37.58 4.30
132 133 0.324368 TGCTCTTCTAGGAAGCCCGA 60.324 55.000 8.73 0.00 37.58 5.14
133 134 0.537188 TTGCTCTTCTAGGAAGCCCG 59.463 55.000 8.73 0.00 37.58 6.13
134 135 1.740718 CGTTGCTCTTCTAGGAAGCCC 60.741 57.143 8.73 0.00 36.04 5.19
135 136 1.204941 TCGTTGCTCTTCTAGGAAGCC 59.795 52.381 8.73 0.00 36.04 4.35
136 137 2.535331 CTCGTTGCTCTTCTAGGAAGC 58.465 52.381 2.74 5.34 36.04 3.86
137 138 2.535331 GCTCGTTGCTCTTCTAGGAAG 58.465 52.381 1.28 1.28 36.04 3.46
138 139 1.135373 CGCTCGTTGCTCTTCTAGGAA 60.135 52.381 0.00 0.00 40.11 3.36
139 140 0.452184 CGCTCGTTGCTCTTCTAGGA 59.548 55.000 0.00 0.00 40.11 2.94
140 141 0.171455 ACGCTCGTTGCTCTTCTAGG 59.829 55.000 0.00 0.00 40.11 3.02
141 142 1.651138 CAACGCTCGTTGCTCTTCTAG 59.349 52.381 19.97 0.00 46.92 2.43
142 143 1.698165 CAACGCTCGTTGCTCTTCTA 58.302 50.000 19.97 0.00 46.92 2.10
143 144 2.522060 CAACGCTCGTTGCTCTTCT 58.478 52.632 19.97 0.00 46.92 2.85
151 152 0.319297 GGACTGGTACAACGCTCGTT 60.319 55.000 1.37 1.37 38.70 3.85
152 153 1.288127 GGACTGGTACAACGCTCGT 59.712 57.895 0.00 0.00 38.70 4.18
153 154 0.108804 ATGGACTGGTACAACGCTCG 60.109 55.000 0.00 0.00 38.70 5.03
154 155 1.067142 TCATGGACTGGTACAACGCTC 60.067 52.381 0.00 0.00 38.70 5.03
155 156 0.973632 TCATGGACTGGTACAACGCT 59.026 50.000 0.00 0.00 38.70 5.07
156 157 1.463444 GTTCATGGACTGGTACAACGC 59.537 52.381 0.00 0.00 38.70 4.84
157 158 2.761559 TGTTCATGGACTGGTACAACG 58.238 47.619 5.55 0.00 38.70 4.10
158 159 3.370978 CGATGTTCATGGACTGGTACAAC 59.629 47.826 5.55 0.00 38.70 3.32
159 160 3.595173 CGATGTTCATGGACTGGTACAA 58.405 45.455 5.55 0.00 38.70 2.41
160 161 2.676750 GCGATGTTCATGGACTGGTACA 60.677 50.000 5.55 0.00 0.00 2.90
161 162 1.933853 GCGATGTTCATGGACTGGTAC 59.066 52.381 5.55 0.00 0.00 3.34
162 163 1.134521 GGCGATGTTCATGGACTGGTA 60.135 52.381 5.55 0.00 0.00 3.25
163 164 0.392998 GGCGATGTTCATGGACTGGT 60.393 55.000 5.55 0.00 0.00 4.00
164 165 0.107508 AGGCGATGTTCATGGACTGG 60.108 55.000 5.55 0.00 0.00 4.00
165 166 1.012086 CAGGCGATGTTCATGGACTG 58.988 55.000 14.28 14.28 0.00 3.51
166 167 0.745845 GCAGGCGATGTTCATGGACT 60.746 55.000 5.55 0.00 0.00 3.85
167 168 1.723870 GCAGGCGATGTTCATGGAC 59.276 57.895 0.00 0.00 0.00 4.02
168 169 1.815003 CGCAGGCGATGTTCATGGA 60.815 57.895 8.15 0.00 42.83 3.41
169 170 1.815003 TCGCAGGCGATGTTCATGG 60.815 57.895 12.94 0.00 44.01 3.66
170 171 3.798380 TCGCAGGCGATGTTCATG 58.202 55.556 12.94 0.00 44.01 3.07
180 181 2.248431 GTGTTTCACGTCGCAGGC 59.752 61.111 0.00 0.00 0.00 4.85
181 182 0.874175 TCTGTGTTTCACGTCGCAGG 60.874 55.000 13.58 0.00 40.96 4.85
182 183 0.229753 GTCTGTGTTTCACGTCGCAG 59.770 55.000 8.75 8.75 41.66 5.18
183 184 1.476235 CGTCTGTGTTTCACGTCGCA 61.476 55.000 0.00 0.00 37.14 5.10
184 185 1.198397 CGTCTGTGTTTCACGTCGC 59.802 57.895 0.00 0.00 37.14 5.19
185 186 0.497265 GACGTCTGTGTTTCACGTCG 59.503 55.000 8.70 0.00 42.48 5.12
187 188 1.535437 GGAGACGTCTGTGTTTCACGT 60.535 52.381 25.58 0.00 37.14 4.49
188 189 1.129326 GGAGACGTCTGTGTTTCACG 58.871 55.000 25.58 0.00 37.14 4.35
189 190 1.859080 GTGGAGACGTCTGTGTTTCAC 59.141 52.381 25.58 10.23 34.56 3.18
190 191 1.535226 CGTGGAGACGTCTGTGTTTCA 60.535 52.381 25.58 0.00 40.91 2.69
191 192 1.129326 CGTGGAGACGTCTGTGTTTC 58.871 55.000 25.58 7.29 40.91 2.78
192 193 0.249322 CCGTGGAGACGTCTGTGTTT 60.249 55.000 25.58 0.00 44.54 2.83
193 194 1.362717 CCGTGGAGACGTCTGTGTT 59.637 57.895 25.58 0.00 44.54 3.32
194 195 2.561956 CCCGTGGAGACGTCTGTGT 61.562 63.158 25.58 0.00 44.54 3.72
195 196 2.258591 CCCGTGGAGACGTCTGTG 59.741 66.667 25.58 9.29 44.54 3.66
196 197 3.681835 GCCCGTGGAGACGTCTGT 61.682 66.667 25.58 0.00 44.54 3.41
197 198 4.778415 CGCCCGTGGAGACGTCTG 62.778 72.222 25.58 8.34 44.54 3.51
199 200 4.773117 GTCGCCCGTGGAGACGTC 62.773 72.222 7.70 7.70 42.04 4.34
202 203 3.966026 CTTCGTCGCCCGTGGAGAC 62.966 68.421 14.01 14.01 46.46 3.36
203 204 3.744719 CTTCGTCGCCCGTGGAGA 61.745 66.667 0.00 0.00 37.94 3.71
204 205 2.558554 AATCTTCGTCGCCCGTGGAG 62.559 60.000 0.00 0.00 37.94 3.86
205 206 2.162338 AAATCTTCGTCGCCCGTGGA 62.162 55.000 0.00 0.00 37.94 4.02
206 207 0.458889 TAAATCTTCGTCGCCCGTGG 60.459 55.000 0.00 0.00 37.94 4.94
207 208 0.921347 CTAAATCTTCGTCGCCCGTG 59.079 55.000 0.00 0.00 37.94 4.94
208 209 0.813184 TCTAAATCTTCGTCGCCCGT 59.187 50.000 0.00 0.00 37.94 5.28
209 210 1.197910 GTCTAAATCTTCGTCGCCCG 58.802 55.000 0.00 0.00 38.13 6.13
210 211 2.580966 AGTCTAAATCTTCGTCGCCC 57.419 50.000 0.00 0.00 0.00 6.13
211 212 3.066481 ACCTAGTCTAAATCTTCGTCGCC 59.934 47.826 0.00 0.00 0.00 5.54
212 213 4.290104 ACCTAGTCTAAATCTTCGTCGC 57.710 45.455 0.00 0.00 0.00 5.19
213 214 9.941664 TTTATAACCTAGTCTAAATCTTCGTCG 57.058 33.333 0.00 0.00 0.00 5.12
222 223 9.846248 GACGACACTTTTATAACCTAGTCTAAA 57.154 33.333 0.00 0.00 0.00 1.85
223 224 8.462016 GGACGACACTTTTATAACCTAGTCTAA 58.538 37.037 0.00 0.00 0.00 2.10
224 225 7.201644 CGGACGACACTTTTATAACCTAGTCTA 60.202 40.741 0.00 0.00 0.00 2.59
225 226 6.404074 CGGACGACACTTTTATAACCTAGTCT 60.404 42.308 0.00 0.00 0.00 3.24
226 227 5.741040 CGGACGACACTTTTATAACCTAGTC 59.259 44.000 0.00 0.00 0.00 2.59
227 228 5.644644 CGGACGACACTTTTATAACCTAGT 58.355 41.667 0.00 0.00 0.00 2.57
228 229 4.501921 GCGGACGACACTTTTATAACCTAG 59.498 45.833 0.00 0.00 0.00 3.02
229 230 4.158394 AGCGGACGACACTTTTATAACCTA 59.842 41.667 0.00 0.00 0.00 3.08
230 231 3.056322 AGCGGACGACACTTTTATAACCT 60.056 43.478 0.00 0.00 0.00 3.50
231 232 3.256558 AGCGGACGACACTTTTATAACC 58.743 45.455 0.00 0.00 0.00 2.85
232 233 4.916099 AAGCGGACGACACTTTTATAAC 57.084 40.909 0.00 0.00 0.00 1.89
233 234 5.236911 ACAAAAGCGGACGACACTTTTATAA 59.763 36.000 14.07 0.00 40.63 0.98
234 235 4.751098 ACAAAAGCGGACGACACTTTTATA 59.249 37.500 14.07 0.00 40.63 0.98
235 236 3.562557 ACAAAAGCGGACGACACTTTTAT 59.437 39.130 14.07 4.63 40.63 1.40
236 237 2.937799 ACAAAAGCGGACGACACTTTTA 59.062 40.909 14.07 0.00 40.63 1.52
237 238 1.741145 ACAAAAGCGGACGACACTTTT 59.259 42.857 10.45 10.45 42.70 2.27
238 239 1.375551 ACAAAAGCGGACGACACTTT 58.624 45.000 0.00 0.00 35.20 2.66
239 240 1.375551 AACAAAAGCGGACGACACTT 58.624 45.000 0.00 0.00 0.00 3.16
240 241 1.375551 AAACAAAAGCGGACGACACT 58.624 45.000 0.00 0.00 0.00 3.55
241 242 2.286025 ACTAAACAAAAGCGGACGACAC 59.714 45.455 0.00 0.00 0.00 3.67
242 243 2.553086 ACTAAACAAAAGCGGACGACA 58.447 42.857 0.00 0.00 0.00 4.35
243 244 3.001533 TGAACTAAACAAAAGCGGACGAC 59.998 43.478 0.00 0.00 0.00 4.34
244 245 3.196463 TGAACTAAACAAAAGCGGACGA 58.804 40.909 0.00 0.00 0.00 4.20
245 246 3.595709 TGAACTAAACAAAAGCGGACG 57.404 42.857 0.00 0.00 0.00 4.79
246 247 7.593644 ACATATTTGAACTAAACAAAAGCGGAC 59.406 33.333 0.00 0.00 39.95 4.79
247 248 7.653647 ACATATTTGAACTAAACAAAAGCGGA 58.346 30.769 0.00 0.00 39.95 5.54
248 249 7.867445 ACATATTTGAACTAAACAAAAGCGG 57.133 32.000 0.00 0.00 39.95 5.52
249 250 8.963130 TCAACATATTTGAACTAAACAAAAGCG 58.037 29.630 0.00 0.00 39.95 4.68
289 290 9.810545 GGATGATTTTTATTTAAACCGGATCAA 57.189 29.630 9.46 0.00 0.00 2.57
290 291 8.132362 CGGATGATTTTTATTTAAACCGGATCA 58.868 33.333 9.46 1.93 34.27 2.92
291 292 8.347035 TCGGATGATTTTTATTTAAACCGGATC 58.653 33.333 9.46 0.00 37.69 3.36
292 293 8.228035 TCGGATGATTTTTATTTAAACCGGAT 57.772 30.769 9.46 0.00 37.69 4.18
293 294 7.627298 TCGGATGATTTTTATTTAAACCGGA 57.373 32.000 9.46 0.00 37.69 5.14
294 295 8.865590 AATCGGATGATTTTTATTTAAACCGG 57.134 30.769 0.00 0.00 42.14 5.28
324 325 7.574128 GCTTTTAAACAAGTCAAACGATTTTCG 59.426 33.333 0.00 0.00 46.93 3.46
325 326 8.592155 AGCTTTTAAACAAGTCAAACGATTTTC 58.408 29.630 0.00 0.00 0.00 2.29
326 327 8.474006 AGCTTTTAAACAAGTCAAACGATTTT 57.526 26.923 0.00 0.00 0.00 1.82
327 328 8.379902 CAAGCTTTTAAACAAGTCAAACGATTT 58.620 29.630 0.00 0.00 0.00 2.17
328 329 7.757624 TCAAGCTTTTAAACAAGTCAAACGATT 59.242 29.630 0.00 0.00 0.00 3.34
329 330 7.254852 TCAAGCTTTTAAACAAGTCAAACGAT 58.745 30.769 0.00 0.00 0.00 3.73
330 331 6.613233 TCAAGCTTTTAAACAAGTCAAACGA 58.387 32.000 0.00 0.00 0.00 3.85
331 332 6.862944 TCAAGCTTTTAAACAAGTCAAACG 57.137 33.333 0.00 0.00 0.00 3.60
340 341 8.555361 GCCACAAATATTTCAAGCTTTTAAACA 58.445 29.630 0.00 0.00 0.00 2.83
341 342 8.555361 TGCCACAAATATTTCAAGCTTTTAAAC 58.445 29.630 0.00 0.00 0.00 2.01
342 343 8.555361 GTGCCACAAATATTTCAAGCTTTTAAA 58.445 29.630 0.00 0.72 0.00 1.52
343 344 7.095857 CGTGCCACAAATATTTCAAGCTTTTAA 60.096 33.333 0.00 0.00 0.00 1.52
344 345 6.364706 CGTGCCACAAATATTTCAAGCTTTTA 59.635 34.615 0.00 0.00 0.00 1.52
345 346 5.177327 CGTGCCACAAATATTTCAAGCTTTT 59.823 36.000 0.00 0.00 0.00 2.27
346 347 4.685628 CGTGCCACAAATATTTCAAGCTTT 59.314 37.500 0.00 0.00 0.00 3.51
347 348 4.236935 CGTGCCACAAATATTTCAAGCTT 58.763 39.130 0.00 0.00 0.00 3.74
348 349 3.836949 CGTGCCACAAATATTTCAAGCT 58.163 40.909 0.00 0.00 0.00 3.74
349 350 2.345341 GCGTGCCACAAATATTTCAAGC 59.655 45.455 0.00 4.02 0.00 4.01
350 351 2.593775 CGCGTGCCACAAATATTTCAAG 59.406 45.455 0.00 0.00 0.00 3.02
351 352 2.590073 CGCGTGCCACAAATATTTCAA 58.410 42.857 0.00 0.00 0.00 2.69
352 353 1.135546 CCGCGTGCCACAAATATTTCA 60.136 47.619 4.92 0.00 0.00 2.69
353 354 1.135517 ACCGCGTGCCACAAATATTTC 60.136 47.619 4.92 0.00 0.00 2.17
354 355 0.885196 ACCGCGTGCCACAAATATTT 59.115 45.000 4.92 0.00 0.00 1.40
355 356 0.885196 AACCGCGTGCCACAAATATT 59.115 45.000 4.92 0.00 0.00 1.28
356 357 0.170116 CAACCGCGTGCCACAAATAT 59.830 50.000 4.92 0.00 0.00 1.28
357 358 1.576920 CAACCGCGTGCCACAAATA 59.423 52.632 4.92 0.00 0.00 1.40
358 359 2.334653 CAACCGCGTGCCACAAAT 59.665 55.556 4.92 0.00 0.00 2.32
359 360 3.893763 CCAACCGCGTGCCACAAA 61.894 61.111 4.92 0.00 0.00 2.83
360 361 4.858680 TCCAACCGCGTGCCACAA 62.859 61.111 4.92 0.00 0.00 3.33
361 362 4.634703 ATCCAACCGCGTGCCACA 62.635 61.111 4.92 0.00 0.00 4.17
362 363 4.101790 CATCCAACCGCGTGCCAC 62.102 66.667 4.92 0.00 0.00 5.01
363 364 4.321966 TCATCCAACCGCGTGCCA 62.322 61.111 4.92 0.00 0.00 4.92
364 365 3.799755 GTCATCCAACCGCGTGCC 61.800 66.667 4.92 0.00 0.00 5.01
365 366 3.799755 GGTCATCCAACCGCGTGC 61.800 66.667 4.92 0.00 0.00 5.34
371 372 2.124695 GGAGCCGGTCATCCAACC 60.125 66.667 15.18 0.07 35.54 3.77
372 373 1.153349 GAGGAGCCGGTCATCCAAC 60.153 63.158 20.24 12.13 38.12 3.77
373 374 0.982852 ATGAGGAGCCGGTCATCCAA 60.983 55.000 20.24 11.10 38.12 3.53
374 375 0.105709 TATGAGGAGCCGGTCATCCA 60.106 55.000 20.24 7.63 38.12 3.41
375 376 1.205893 GATATGAGGAGCCGGTCATCC 59.794 57.143 8.45 10.86 34.92 3.51
376 377 1.895798 TGATATGAGGAGCCGGTCATC 59.104 52.381 8.45 9.58 36.46 2.92
377 378 1.620819 GTGATATGAGGAGCCGGTCAT 59.379 52.381 1.90 6.94 37.22 3.06
378 379 1.040646 GTGATATGAGGAGCCGGTCA 58.959 55.000 1.90 0.00 0.00 4.02
379 380 0.318762 GGTGATATGAGGAGCCGGTC 59.681 60.000 1.90 0.00 0.00 4.79
380 381 0.398522 TGGTGATATGAGGAGCCGGT 60.399 55.000 1.90 0.00 0.00 5.28
381 382 0.979665 ATGGTGATATGAGGAGCCGG 59.020 55.000 0.00 0.00 0.00 6.13
382 383 3.181471 GGATATGGTGATATGAGGAGCCG 60.181 52.174 0.00 0.00 0.00 5.52
383 384 3.181471 CGGATATGGTGATATGAGGAGCC 60.181 52.174 0.00 0.00 0.00 4.70
384 385 3.449018 ACGGATATGGTGATATGAGGAGC 59.551 47.826 0.00 0.00 0.00 4.70
385 386 5.667539 AACGGATATGGTGATATGAGGAG 57.332 43.478 0.00 0.00 0.00 3.69
386 387 7.310423 CCTTAAACGGATATGGTGATATGAGGA 60.310 40.741 0.00 0.00 0.00 3.71
387 388 6.818644 CCTTAAACGGATATGGTGATATGAGG 59.181 42.308 0.00 0.00 0.00 3.86
388 389 6.818644 CCCTTAAACGGATATGGTGATATGAG 59.181 42.308 0.00 0.00 0.00 2.90
389 390 6.271391 ACCCTTAAACGGATATGGTGATATGA 59.729 38.462 0.00 0.00 0.00 2.15
390 391 6.472887 ACCCTTAAACGGATATGGTGATATG 58.527 40.000 0.00 0.00 0.00 1.78
391 392 6.296259 GGACCCTTAAACGGATATGGTGATAT 60.296 42.308 0.00 0.00 0.00 1.63
392 393 5.012354 GGACCCTTAAACGGATATGGTGATA 59.988 44.000 0.00 0.00 0.00 2.15
393 394 4.202430 GGACCCTTAAACGGATATGGTGAT 60.202 45.833 0.00 0.00 0.00 3.06
394 395 3.135167 GGACCCTTAAACGGATATGGTGA 59.865 47.826 0.00 0.00 0.00 4.02
395 396 3.473625 GGACCCTTAAACGGATATGGTG 58.526 50.000 0.00 0.00 0.00 4.17
396 397 2.103601 CGGACCCTTAAACGGATATGGT 59.896 50.000 0.00 0.00 0.00 3.55
397 398 2.366266 TCGGACCCTTAAACGGATATGG 59.634 50.000 0.00 0.00 0.00 2.74
398 399 3.319972 TCTCGGACCCTTAAACGGATATG 59.680 47.826 0.00 0.00 0.00 1.78
399 400 3.569491 TCTCGGACCCTTAAACGGATAT 58.431 45.455 0.00 0.00 0.00 1.63
400 401 3.017048 TCTCGGACCCTTAAACGGATA 57.983 47.619 0.00 0.00 0.00 2.59
401 402 1.856629 TCTCGGACCCTTAAACGGAT 58.143 50.000 0.00 0.00 0.00 4.18
402 403 1.479323 CATCTCGGACCCTTAAACGGA 59.521 52.381 0.00 0.00 0.00 4.69
403 404 1.935933 CATCTCGGACCCTTAAACGG 58.064 55.000 0.00 0.00 0.00 4.44
404 405 1.287425 GCATCTCGGACCCTTAAACG 58.713 55.000 0.00 0.00 0.00 3.60
405 406 1.664873 GGCATCTCGGACCCTTAAAC 58.335 55.000 0.00 0.00 0.00 2.01
406 407 0.544697 GGGCATCTCGGACCCTTAAA 59.455 55.000 0.00 0.00 40.75 1.52
407 408 2.218066 GGGCATCTCGGACCCTTAA 58.782 57.895 0.00 0.00 40.75 1.85
408 409 3.965660 GGGCATCTCGGACCCTTA 58.034 61.111 0.00 0.00 40.75 2.69
411 412 1.335132 TGTTAGGGCATCTCGGACCC 61.335 60.000 0.00 0.00 44.62 4.46
412 413 0.539986 TTGTTAGGGCATCTCGGACC 59.460 55.000 0.00 0.00 35.57 4.46
413 414 1.207329 ACTTGTTAGGGCATCTCGGAC 59.793 52.381 0.00 0.00 0.00 4.79
414 415 1.568504 ACTTGTTAGGGCATCTCGGA 58.431 50.000 0.00 0.00 0.00 4.55
415 416 2.483188 GGTACTTGTTAGGGCATCTCGG 60.483 54.545 0.00 0.00 0.00 4.63
416 417 2.483188 GGGTACTTGTTAGGGCATCTCG 60.483 54.545 0.00 0.00 0.00 4.04
417 418 2.158798 GGGGTACTTGTTAGGGCATCTC 60.159 54.545 0.00 0.00 0.00 2.75
418 419 1.844497 GGGGTACTTGTTAGGGCATCT 59.156 52.381 0.00 0.00 0.00 2.90
419 420 1.133884 GGGGGTACTTGTTAGGGCATC 60.134 57.143 0.00 0.00 0.00 3.91
420 421 0.924090 GGGGGTACTTGTTAGGGCAT 59.076 55.000 0.00 0.00 0.00 4.40
421 422 0.178855 AGGGGGTACTTGTTAGGGCA 60.179 55.000 0.00 0.00 0.00 5.36
422 423 0.545171 GAGGGGGTACTTGTTAGGGC 59.455 60.000 0.00 0.00 0.00 5.19
423 424 1.210538 GGAGGGGGTACTTGTTAGGG 58.789 60.000 0.00 0.00 0.00 3.53
424 425 0.828677 CGGAGGGGGTACTTGTTAGG 59.171 60.000 0.00 0.00 0.00 2.69
425 426 1.565067 ACGGAGGGGGTACTTGTTAG 58.435 55.000 0.00 0.00 0.00 2.34
426 427 2.028561 AACGGAGGGGGTACTTGTTA 57.971 50.000 0.00 0.00 0.00 2.41
427 428 1.072806 GAAACGGAGGGGGTACTTGTT 59.927 52.381 0.00 0.00 0.00 2.83
428 429 0.689055 GAAACGGAGGGGGTACTTGT 59.311 55.000 0.00 0.00 0.00 3.16
429 430 0.981943 AGAAACGGAGGGGGTACTTG 59.018 55.000 0.00 0.00 0.00 3.16
430 431 2.629017 TAGAAACGGAGGGGGTACTT 57.371 50.000 0.00 0.00 0.00 2.24
431 432 2.629017 TTAGAAACGGAGGGGGTACT 57.371 50.000 0.00 0.00 0.00 2.73
432 433 3.920231 ATTTAGAAACGGAGGGGGTAC 57.080 47.619 0.00 0.00 0.00 3.34
433 434 6.845975 ACTTATATTTAGAAACGGAGGGGGTA 59.154 38.462 0.00 0.00 0.00 3.69
434 435 5.668991 ACTTATATTTAGAAACGGAGGGGGT 59.331 40.000 0.00 0.00 0.00 4.95
435 436 6.183810 ACTTATATTTAGAAACGGAGGGGG 57.816 41.667 0.00 0.00 0.00 5.40
436 437 9.788889 AAATACTTATATTTAGAAACGGAGGGG 57.211 33.333 0.00 0.00 38.89 4.79
512 513 6.416455 CGAGCAGAAAGAGTGAATGTATACTC 59.584 42.308 4.17 0.00 42.77 2.59
513 514 6.269315 CGAGCAGAAAGAGTGAATGTATACT 58.731 40.000 4.17 0.00 0.00 2.12
514 515 5.460419 CCGAGCAGAAAGAGTGAATGTATAC 59.540 44.000 0.00 0.00 0.00 1.47
515 516 5.127194 ACCGAGCAGAAAGAGTGAATGTATA 59.873 40.000 0.00 0.00 0.00 1.47
516 517 4.081420 ACCGAGCAGAAAGAGTGAATGTAT 60.081 41.667 0.00 0.00 0.00 2.29
517 518 3.258372 ACCGAGCAGAAAGAGTGAATGTA 59.742 43.478 0.00 0.00 0.00 2.29
518 519 2.037772 ACCGAGCAGAAAGAGTGAATGT 59.962 45.455 0.00 0.00 0.00 2.71
519 520 2.693069 ACCGAGCAGAAAGAGTGAATG 58.307 47.619 0.00 0.00 0.00 2.67
520 521 4.081420 ACATACCGAGCAGAAAGAGTGAAT 60.081 41.667 0.00 0.00 0.00 2.57
521 522 3.258372 ACATACCGAGCAGAAAGAGTGAA 59.742 43.478 0.00 0.00 0.00 3.18
522 523 2.826128 ACATACCGAGCAGAAAGAGTGA 59.174 45.455 0.00 0.00 0.00 3.41
523 524 3.238108 ACATACCGAGCAGAAAGAGTG 57.762 47.619 0.00 0.00 0.00 3.51
524 525 4.096682 GTCTACATACCGAGCAGAAAGAGT 59.903 45.833 0.00 0.00 0.00 3.24
525 526 4.498345 GGTCTACATACCGAGCAGAAAGAG 60.498 50.000 0.00 0.00 0.00 2.85
526 527 3.380637 GGTCTACATACCGAGCAGAAAGA 59.619 47.826 0.00 0.00 0.00 2.52
527 528 3.130516 TGGTCTACATACCGAGCAGAAAG 59.869 47.826 0.00 0.00 42.91 2.62
528 529 3.093814 TGGTCTACATACCGAGCAGAAA 58.906 45.455 0.00 0.00 42.91 2.52
529 530 2.426024 GTGGTCTACATACCGAGCAGAA 59.574 50.000 0.00 0.00 42.91 3.02
530 531 2.022195 GTGGTCTACATACCGAGCAGA 58.978 52.381 0.00 0.00 42.91 4.26
531 532 1.749063 TGTGGTCTACATACCGAGCAG 59.251 52.381 0.00 0.00 42.91 4.24
532 533 1.842052 TGTGGTCTACATACCGAGCA 58.158 50.000 0.00 0.00 42.91 4.26
563 564 9.907229 CTCCCTAAGTTCCAAAATATAAGTCTT 57.093 33.333 0.00 0.00 0.00 3.01
564 565 9.059023 ACTCCCTAAGTTCCAAAATATAAGTCT 57.941 33.333 0.00 0.00 33.03 3.24
568 569 9.603921 CGTTACTCCCTAAGTTCCAAAATATAA 57.396 33.333 0.00 0.00 39.55 0.98
569 570 8.980596 TCGTTACTCCCTAAGTTCCAAAATATA 58.019 33.333 0.00 0.00 39.55 0.86
570 571 7.767659 GTCGTTACTCCCTAAGTTCCAAAATAT 59.232 37.037 0.00 0.00 39.55 1.28
571 572 7.099120 GTCGTTACTCCCTAAGTTCCAAAATA 58.901 38.462 0.00 0.00 39.55 1.40
572 573 5.936372 GTCGTTACTCCCTAAGTTCCAAAAT 59.064 40.000 0.00 0.00 39.55 1.82
573 574 5.163322 TGTCGTTACTCCCTAAGTTCCAAAA 60.163 40.000 0.00 0.00 39.55 2.44
574 575 4.344679 TGTCGTTACTCCCTAAGTTCCAAA 59.655 41.667 0.00 0.00 39.55 3.28
575 576 3.896888 TGTCGTTACTCCCTAAGTTCCAA 59.103 43.478 0.00 0.00 39.55 3.53
576 577 3.499338 TGTCGTTACTCCCTAAGTTCCA 58.501 45.455 0.00 0.00 39.55 3.53
577 578 4.525912 TTGTCGTTACTCCCTAAGTTCC 57.474 45.455 0.00 0.00 39.55 3.62
578 579 5.536260 AGTTTGTCGTTACTCCCTAAGTTC 58.464 41.667 0.00 0.00 39.55 3.01
579 580 5.536260 GAGTTTGTCGTTACTCCCTAAGTT 58.464 41.667 0.00 0.00 39.55 2.66
580 581 4.320788 CGAGTTTGTCGTTACTCCCTAAGT 60.321 45.833 0.00 0.00 44.20 2.24
581 582 4.164294 CGAGTTTGTCGTTACTCCCTAAG 58.836 47.826 0.00 0.00 44.20 2.18
582 583 4.164822 CGAGTTTGTCGTTACTCCCTAA 57.835 45.455 0.00 0.00 44.20 2.69
583 584 3.837213 CGAGTTTGTCGTTACTCCCTA 57.163 47.619 0.00 0.00 44.20 3.53
584 585 2.719426 CGAGTTTGTCGTTACTCCCT 57.281 50.000 0.00 0.00 44.20 4.20
597 598 4.096382 ACAAATCAACAAGCTCACGAGTTT 59.904 37.500 0.00 0.00 31.86 2.66
598 599 3.627577 ACAAATCAACAAGCTCACGAGTT 59.372 39.130 0.00 0.00 0.00 3.01
599 600 3.206150 ACAAATCAACAAGCTCACGAGT 58.794 40.909 0.00 0.00 0.00 4.18
600 601 3.662713 CGACAAATCAACAAGCTCACGAG 60.663 47.826 0.00 0.00 0.00 4.18
601 602 2.220824 CGACAAATCAACAAGCTCACGA 59.779 45.455 0.00 0.00 0.00 4.35
602 603 2.032894 ACGACAAATCAACAAGCTCACG 60.033 45.455 0.00 0.00 0.00 4.35
603 604 3.291585 CACGACAAATCAACAAGCTCAC 58.708 45.455 0.00 0.00 0.00 3.51
604 605 2.286950 GCACGACAAATCAACAAGCTCA 60.287 45.455 0.00 0.00 0.00 4.26
605 606 2.031682 AGCACGACAAATCAACAAGCTC 60.032 45.455 0.00 0.00 0.00 4.09
606 607 1.949525 AGCACGACAAATCAACAAGCT 59.050 42.857 0.00 0.00 0.00 3.74
607 608 2.046313 CAGCACGACAAATCAACAAGC 58.954 47.619 0.00 0.00 0.00 4.01
608 609 2.653890 CCAGCACGACAAATCAACAAG 58.346 47.619 0.00 0.00 0.00 3.16
609 610 1.268999 GCCAGCACGACAAATCAACAA 60.269 47.619 0.00 0.00 0.00 2.83
610 611 0.310543 GCCAGCACGACAAATCAACA 59.689 50.000 0.00 0.00 0.00 3.33
611 612 0.593128 AGCCAGCACGACAAATCAAC 59.407 50.000 0.00 0.00 0.00 3.18
612 613 0.592637 CAGCCAGCACGACAAATCAA 59.407 50.000 0.00 0.00 0.00 2.57
613 614 0.250252 TCAGCCAGCACGACAAATCA 60.250 50.000 0.00 0.00 0.00 2.57
614 615 0.166814 GTCAGCCAGCACGACAAATC 59.833 55.000 7.19 0.00 0.00 2.17
615 616 1.568612 CGTCAGCCAGCACGACAAAT 61.569 55.000 11.32 0.00 38.32 2.32
616 617 2.243957 CGTCAGCCAGCACGACAAA 61.244 57.895 11.32 0.00 38.32 2.83
617 618 2.661537 CGTCAGCCAGCACGACAA 60.662 61.111 11.32 0.00 38.32 3.18
618 619 4.662961 CCGTCAGCCAGCACGACA 62.663 66.667 11.32 0.00 38.32 4.35
780 781 2.281761 CCACCACCACCACTGCTC 60.282 66.667 0.00 0.00 0.00 4.26
784 785 2.595095 CACACCACCACCACCACT 59.405 61.111 0.00 0.00 0.00 4.00
785 786 2.518349 CCACACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
786 787 2.559922 GAACCACACCACCACCACCA 62.560 60.000 0.00 0.00 0.00 4.17
787 788 1.826487 GAACCACACCACCACCACC 60.826 63.158 0.00 0.00 0.00 4.61
788 789 2.184167 CGAACCACACCACCACCAC 61.184 63.158 0.00 0.00 0.00 4.16
789 790 2.190843 CGAACCACACCACCACCA 59.809 61.111 0.00 0.00 0.00 4.17
823 825 1.285950 CCGAAGAGCGTGTGAGTGA 59.714 57.895 0.00 0.00 38.67 3.41
825 827 1.173444 AGACCGAAGAGCGTGTGAGT 61.173 55.000 0.00 0.00 38.67 3.41
828 830 0.318699 TGAAGACCGAAGAGCGTGTG 60.319 55.000 0.00 0.00 38.67 3.82
829 831 0.318784 GTGAAGACCGAAGAGCGTGT 60.319 55.000 0.00 0.00 38.67 4.49
830 832 1.009389 GGTGAAGACCGAAGAGCGTG 61.009 60.000 0.00 0.00 38.67 5.34
831 833 1.289380 GGTGAAGACCGAAGAGCGT 59.711 57.895 0.00 0.00 38.67 5.07
833 835 0.670854 GTGGGTGAAGACCGAAGAGC 60.671 60.000 0.00 0.00 44.23 4.09
835 837 0.391597 GTGTGGGTGAAGACCGAAGA 59.608 55.000 0.00 0.00 44.23 2.87
836 838 0.105964 TGTGTGGGTGAAGACCGAAG 59.894 55.000 0.00 0.00 44.23 3.79
837 839 0.179067 GTGTGTGGGTGAAGACCGAA 60.179 55.000 0.00 0.00 44.23 4.30
840 842 1.597027 CCGTGTGTGGGTGAAGACC 60.597 63.158 0.00 0.00 42.27 3.85
841 843 2.251642 GCCGTGTGTGGGTGAAGAC 61.252 63.158 0.00 0.00 0.00 3.01
842 844 2.110213 GCCGTGTGTGGGTGAAGA 59.890 61.111 0.00 0.00 0.00 2.87
843 845 2.978010 GGCCGTGTGTGGGTGAAG 60.978 66.667 0.00 0.00 0.00 3.02
844 846 3.798511 TGGCCGTGTGTGGGTGAA 61.799 61.111 0.00 0.00 0.00 3.18
845 847 4.555709 GTGGCCGTGTGTGGGTGA 62.556 66.667 0.00 0.00 0.00 4.02
858 860 3.426568 GAAGCTGTGAGGCGTGGC 61.427 66.667 0.00 0.00 37.29 5.01
859 861 2.743928 GGAAGCTGTGAGGCGTGG 60.744 66.667 0.00 0.00 37.29 4.94
860 862 1.739562 GAGGAAGCTGTGAGGCGTG 60.740 63.158 0.00 0.00 37.29 5.34
861 863 2.210013 TGAGGAAGCTGTGAGGCGT 61.210 57.895 0.00 0.00 37.29 5.68
862 864 1.739562 GTGAGGAAGCTGTGAGGCG 60.740 63.158 0.00 0.00 37.29 5.52
863 865 0.390998 GAGTGAGGAAGCTGTGAGGC 60.391 60.000 0.00 0.00 0.00 4.70
864 866 0.248843 GGAGTGAGGAAGCTGTGAGG 59.751 60.000 0.00 0.00 0.00 3.86
879 881 3.255888 GGAAATTGGAAGCGAAAAGGAGT 59.744 43.478 0.00 0.00 0.00 3.85
880 882 3.367395 GGGAAATTGGAAGCGAAAAGGAG 60.367 47.826 0.00 0.00 0.00 3.69
881 883 2.560981 GGGAAATTGGAAGCGAAAAGGA 59.439 45.455 0.00 0.00 0.00 3.36
951 961 0.453615 GAGCGAGATACGGCAGATCG 60.454 60.000 0.00 0.00 42.83 3.69
953 963 1.857318 CGGAGCGAGATACGGCAGAT 61.857 60.000 0.00 0.00 42.83 2.90
954 964 2.543802 CGGAGCGAGATACGGCAGA 61.544 63.158 0.00 0.00 42.83 4.26
955 965 2.050895 CGGAGCGAGATACGGCAG 60.051 66.667 0.00 0.00 42.83 4.85
1070 1089 4.828925 GAGCGGAGGAGCACAGCC 62.829 72.222 0.00 0.00 40.15 4.85
1146 1165 3.753070 GACCGGCTCGTCGTCATCC 62.753 68.421 0.00 0.00 0.00 3.51
1210 1232 2.747855 GTTCTTGGCGCCAGAGGG 60.748 66.667 30.75 19.96 37.18 4.30
1270 1292 4.353437 GACCTTGGTCGGCGTCGT 62.353 66.667 10.18 0.00 37.69 4.34
1276 1301 2.358737 GGTGCTGACCTTGGTCGG 60.359 66.667 20.99 20.99 39.47 4.79
1289 1314 3.423154 CGGTCGCCTTCTTGGTGC 61.423 66.667 0.00 0.00 45.61 5.01
1317 1342 1.001633 GGCTTCTTGGTCGTGGTAGAA 59.998 52.381 0.00 0.00 0.00 2.10
1320 1387 1.290955 CGGCTTCTTGGTCGTGGTA 59.709 57.895 0.00 0.00 0.00 3.25
1364 1431 3.860930 TTCGGGACCTTGGGCTTGC 62.861 63.158 0.00 0.00 0.00 4.01
1418 1485 2.046314 ACTTGGCGGAATCGGTGG 60.046 61.111 0.00 0.00 36.79 4.61
1420 1487 2.267961 GGACTTGGCGGAATCGGT 59.732 61.111 0.00 0.00 36.79 4.69
1559 1626 1.978580 ACTTGGTCGAATCCACCTTCT 59.021 47.619 0.00 0.00 37.20 2.85
1583 1650 1.912371 GACGGCCTTCGCTTTCTTGG 61.912 60.000 0.00 0.00 43.89 3.61
2175 2242 4.548513 CCCTCCTCCTCCTCCGGG 62.549 77.778 0.00 0.00 0.00 5.73
2403 2470 0.251832 TCTTCTTCCACTCCTCGGCT 60.252 55.000 0.00 0.00 0.00 5.52
2484 2551 3.498661 CCCATCTTATACCCAAGCCCTTC 60.499 52.174 0.00 0.00 0.00 3.46
2517 2584 6.656693 TCTTGTTCTCCTTGATCTTCCAATTC 59.343 38.462 0.00 0.00 0.00 2.17
2576 2643 8.260114 ACTCAAACCAATTCAAAATGAGAAAGT 58.740 29.630 6.86 0.00 37.01 2.66
2666 2733 5.701750 TGGAGCCAAATGTCAAAAATCATTG 59.298 36.000 0.00 0.00 34.98 2.82
2789 2871 8.405531 AGATTACACCCAAAATGTATTTCATCG 58.594 33.333 0.00 0.00 35.48 3.84
2833 2915 8.402798 TGTTCCATGTGAGTTGTACATTTATT 57.597 30.769 0.00 0.00 36.67 1.40
2834 2916 7.994425 TGTTCCATGTGAGTTGTACATTTAT 57.006 32.000 0.00 0.00 36.67 1.40
2835 2917 7.994425 ATGTTCCATGTGAGTTGTACATTTA 57.006 32.000 0.00 0.00 36.67 1.40
2836 2918 6.899393 ATGTTCCATGTGAGTTGTACATTT 57.101 33.333 0.00 0.00 36.67 2.32
2837 2919 8.579850 AATATGTTCCATGTGAGTTGTACATT 57.420 30.769 0.00 0.00 36.67 2.71
2920 4039 9.816354 GTTAATGTTTATAAGGGTGCATTTGAT 57.184 29.630 0.00 0.00 0.00 2.57
3045 4169 7.406031 TGTTATTTTTGTCCAAACCTACACA 57.594 32.000 0.00 0.00 0.00 3.72
3054 4178 8.203485 AGAGCTCATTTTGTTATTTTTGTCCAA 58.797 29.630 17.77 0.00 0.00 3.53
3100 4224 4.445385 GCAAAACGATGCTTCAAAATGACT 59.555 37.500 0.08 0.00 43.06 3.41
3110 4234 1.270550 CTCTTGGGCAAAACGATGCTT 59.729 47.619 11.18 0.00 45.68 3.91
3240 4374 5.927689 CCAAGCTCAAATGCACTTTTATGAA 59.072 36.000 0.00 0.00 34.99 2.57
3397 4532 0.392998 GAATTGCTTCAGGCTCCCGA 60.393 55.000 0.00 0.00 42.39 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.