Multiple sequence alignment - TraesCS6D01G360500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G360500 chr6D 100.000 7750 0 0 1 7750 452100246 452107995 0.000000e+00 14312.0
1 TraesCS6D01G360500 chr6D 99.048 1366 13 0 1554 2919 452068620 452069985 0.000000e+00 2451.0
2 TraesCS6D01G360500 chr6D 98.051 1180 23 0 172 1351 462413649 462414828 0.000000e+00 2052.0
3 TraesCS6D01G360500 chr6D 100.000 95 0 0 1348 1442 462415729 462415823 7.990000e-40 176.0
4 TraesCS6D01G360500 chr6D 96.154 104 4 0 34 137 462413540 462413643 3.720000e-38 171.0
5 TraesCS6D01G360500 chr6D 97.436 78 2 0 1434 1511 462416316 462416393 4.880000e-27 134.0
6 TraesCS6D01G360500 chr6D 97.959 49 1 0 1505 1553 452069958 452069910 1.390000e-12 86.1
7 TraesCS6D01G360500 chr6D 97.959 49 1 0 2844 2892 452101798 452101750 1.390000e-12 86.1
8 TraesCS6D01G360500 chr6D 97.959 49 1 0 1505 1553 452103137 452103089 1.390000e-12 86.1
9 TraesCS6D01G360500 chr6D 100.000 29 0 0 1630 1658 42341714 42341742 4.000000e-03 54.7
10 TraesCS6D01G360500 chr6A 95.530 3266 126 12 2911 6164 597858231 597861488 0.000000e+00 5204.0
11 TraesCS6D01G360500 chr6A 91.382 1288 70 21 1654 2910 597856911 597858188 0.000000e+00 1725.0
12 TraesCS6D01G360500 chr6A 93.290 1088 42 13 6203 7272 597861497 597862571 0.000000e+00 1576.0
13 TraesCS6D01G360500 chr6A 84.185 1037 73 43 106 1103 609168236 609169220 0.000000e+00 922.0
14 TraesCS6D01G360500 chr6A 82.769 325 22 13 7257 7580 597862600 597862891 7.710000e-65 259.0
15 TraesCS6D01G360500 chr6A 90.526 95 7 1 1349 1441 609170301 609170395 2.940000e-24 124.0
16 TraesCS6D01G360500 chr6B 95.271 1438 58 5 4180 5615 686687491 686688920 0.000000e+00 2270.0
17 TraesCS6D01G360500 chr6B 95.890 1241 37 6 2911 4141 686685800 686687036 0.000000e+00 1997.0
18 TraesCS6D01G360500 chr6B 95.481 1040 33 10 5983 7018 686688917 686689946 0.000000e+00 1648.0
19 TraesCS6D01G360500 chr6B 89.595 1038 60 18 1727 2728 686684585 686685610 0.000000e+00 1275.0
20 TraesCS6D01G360500 chr6B 85.258 1316 102 38 64 1323 704881461 704882740 0.000000e+00 1271.0
21 TraesCS6D01G360500 chr6B 89.414 614 43 8 6247 6857 686836882 686837476 0.000000e+00 754.0
22 TraesCS6D01G360500 chr6B 89.597 471 41 4 7212 7681 686849576 686850039 6.700000e-165 592.0
23 TraesCS6D01G360500 chr6B 80.577 381 47 7 5629 5983 30039188 30039567 1.280000e-67 268.0
24 TraesCS6D01G360500 chr6B 94.079 152 9 0 2762 2913 686685609 686685760 1.680000e-56 231.0
25 TraesCS6D01G360500 chr6B 82.645 242 18 8 7084 7309 686689947 686690180 7.940000e-45 193.0
26 TraesCS6D01G360500 chr6B 95.556 45 2 0 34 78 704881393 704881437 1.080000e-08 73.1
27 TraesCS6D01G360500 chr6B 94.872 39 2 0 1703 1741 686684531 686684569 2.330000e-05 62.1
28 TraesCS6D01G360500 chrUn 100.000 433 0 0 2218 2650 476211594 476211162 0.000000e+00 800.0
29 TraesCS6D01G360500 chr2D 87.968 374 41 4 5615 5984 624658890 624658517 9.230000e-119 438.0
30 TraesCS6D01G360500 chr2B 86.170 376 47 5 5617 5987 643676326 643675951 1.210000e-107 401.0
31 TraesCS6D01G360500 chr2B 81.186 388 56 15 5612 5984 607548579 607548964 5.880000e-76 296.0
32 TraesCS6D01G360500 chr2B 92.188 64 4 1 1554 1616 665982065 665982002 1.070000e-13 89.8
33 TraesCS6D01G360500 chr4D 84.971 346 37 10 5644 5984 375733827 375734162 3.460000e-88 337.0
34 TraesCS6D01G360500 chr4D 78.231 147 27 5 5848 5991 63093113 63092969 1.070000e-13 89.8
35 TraesCS6D01G360500 chr3A 80.867 392 53 14 5613 5986 323105919 323105532 9.840000e-74 289.0
36 TraesCS6D01G360500 chr3B 79.389 393 57 15 5612 5987 11632884 11632499 9.980000e-64 255.0
37 TraesCS6D01G360500 chr3B 97.778 45 0 1 1613 1657 216422197 216422154 8.340000e-10 76.8
38 TraesCS6D01G360500 chr7D 80.980 347 37 9 5615 5934 380632866 380633210 1.670000e-61 248.0
39 TraesCS6D01G360500 chr7D 100.000 28 0 0 1630 1657 48515201 48515174 1.400000e-02 52.8
40 TraesCS6D01G360500 chr7A 92.537 67 5 0 1554 1620 707829281 707829215 6.400000e-16 97.1
41 TraesCS6D01G360500 chr7A 100.000 28 0 0 1630 1657 535320782 535320755 1.400000e-02 52.8
42 TraesCS6D01G360500 chr3D 92.537 67 4 1 1554 1620 11564334 11564269 2.300000e-15 95.3
43 TraesCS6D01G360500 chr3D 88.679 53 6 0 5937 5989 416196682 416196630 1.810000e-06 65.8
44 TraesCS6D01G360500 chr3D 95.122 41 2 0 1557 1597 570535476 570535516 1.810000e-06 65.8
45 TraesCS6D01G360500 chr3D 100.000 29 0 0 1630 1658 427049417 427049445 4.000000e-03 54.7
46 TraesCS6D01G360500 chr4A 93.548 62 4 0 1554 1615 17730561 17730500 8.280000e-15 93.5
47 TraesCS6D01G360500 chr4A 90.476 42 1 3 1619 1657 715170274 715170315 1.400000e-02 52.8
48 TraesCS6D01G360500 chr7B 88.889 63 7 0 1554 1616 664394863 664394925 2.320000e-10 78.7
49 TraesCS6D01G360500 chr7B 95.745 47 2 0 1554 1600 408908929 408908883 8.340000e-10 76.8
50 TraesCS6D01G360500 chr1A 87.097 62 7 1 1554 1614 357122734 357122795 1.400000e-07 69.4
51 TraesCS6D01G360500 chr1A 100.000 28 0 0 1630 1657 556447524 556447497 1.400000e-02 52.8
52 TraesCS6D01G360500 chr5D 91.667 48 4 0 5937 5984 483566783 483566736 5.020000e-07 67.6
53 TraesCS6D01G360500 chr1B 100.000 29 0 0 1631 1659 229300354 229300382 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G360500 chr6D 452100246 452107995 7749 False 14312.000000 14312 100.000000 1 7750 1 chr6D.!!$F3 7749
1 TraesCS6D01G360500 chr6D 452068620 452069985 1365 False 2451.000000 2451 99.048000 1554 2919 1 chr6D.!!$F2 1365
2 TraesCS6D01G360500 chr6D 462413540 462416393 2853 False 633.250000 2052 97.910250 34 1511 4 chr6D.!!$F4 1477
3 TraesCS6D01G360500 chr6A 597856911 597862891 5980 False 2191.000000 5204 90.742750 1654 7580 4 chr6A.!!$F1 5926
4 TraesCS6D01G360500 chr6A 609168236 609170395 2159 False 523.000000 922 87.355500 106 1441 2 chr6A.!!$F2 1335
5 TraesCS6D01G360500 chr6B 686684531 686690180 5649 False 1096.585714 2270 92.547571 1703 7309 7 chr6B.!!$F4 5606
6 TraesCS6D01G360500 chr6B 686836882 686837476 594 False 754.000000 754 89.414000 6247 6857 1 chr6B.!!$F2 610
7 TraesCS6D01G360500 chr6B 704881393 704882740 1347 False 672.050000 1271 90.407000 34 1323 2 chr6B.!!$F5 1289

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 176 1.817099 CTGCGCTCAATCAGGTCCC 60.817 63.158 9.73 0.00 0.00 4.46 F
1218 1343 1.151777 CGTGCTGTCCGTTTGTGAGT 61.152 55.000 0.00 0.00 0.00 3.41 F
1540 3406 0.033796 CATCCAACCCAGCATGAGGT 60.034 55.000 0.00 0.00 40.64 3.85 F
3122 5148 0.617249 GGGGGAATGTGGGCAATTGA 60.617 55.000 10.34 0.00 0.00 2.57 F
3471 5499 3.127030 CCGCTTACTTTTTAGGGCTTCTG 59.873 47.826 0.00 0.00 0.00 3.02 F
4563 7016 0.168128 CTCGGTTCCAATTTCGTGGC 59.832 55.000 0.00 0.00 38.68 5.01 F
4573 7026 1.600023 ATTTCGTGGCGTTCCTTTCA 58.400 45.000 0.00 0.00 0.00 2.69 F
5896 8353 0.172352 GCAGGAGTCCGTTCTCTCTG 59.828 60.000 2.76 13.04 36.63 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 3387 0.033796 ACCTCATGCTGGGTTGGATG 60.034 55.000 8.97 0.0 37.16 3.51 R
3056 5082 3.498397 CAGCGTGTTCACCTAAAGATGTT 59.502 43.478 0.00 0.0 0.00 2.71 R
3428 5456 4.072131 GGAAGCAGTTACCTCAAACATCA 58.928 43.478 0.00 0.0 0.00 3.07 R
4189 6637 0.317938 GTCGACACTCTCACAGCGTT 60.318 55.000 11.55 0.0 0.00 4.84 R
5465 7920 0.323629 TTTGGGCAACTACCTCCTCG 59.676 55.000 0.00 0.0 0.00 4.63 R
5745 8201 0.321671 TGAAAAGTGGGCGAGAGAGG 59.678 55.000 0.00 0.0 0.00 3.69 R
6569 9027 0.733729 CTTTCTGCTGCTGCTCCATC 59.266 55.000 17.00 0.0 40.48 3.51 R
7635 10172 0.108662 CCCAGGAGCCAAAAATTCGC 60.109 55.000 0.00 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.749841 GTACGCTCATGAAATCTATATTCAGT 57.250 34.615 0.00 0.00 39.92 3.41
26 27 7.881643 ACGCTCATGAAATCTATATTCAGTC 57.118 36.000 0.00 0.00 39.92 3.51
27 28 7.436933 ACGCTCATGAAATCTATATTCAGTCA 58.563 34.615 0.00 0.00 39.92 3.41
28 29 7.598118 ACGCTCATGAAATCTATATTCAGTCAG 59.402 37.037 0.00 0.00 39.92 3.51
29 30 7.063191 CGCTCATGAAATCTATATTCAGTCAGG 59.937 40.741 0.00 0.00 39.92 3.86
30 31 7.333921 GCTCATGAAATCTATATTCAGTCAGGG 59.666 40.741 0.00 0.00 39.92 4.45
31 32 7.683578 TCATGAAATCTATATTCAGTCAGGGG 58.316 38.462 0.00 0.00 39.92 4.79
32 33 5.869579 TGAAATCTATATTCAGTCAGGGGC 58.130 41.667 0.00 0.00 33.15 5.80
92 131 4.157289 TCAGTACTAGTAGCAGGAAAACCG 59.843 45.833 1.87 0.00 0.00 4.44
137 176 1.817099 CTGCGCTCAATCAGGTCCC 60.817 63.158 9.73 0.00 0.00 4.46
148 187 2.203182 AGGTCCCGGGAACACTGA 59.797 61.111 39.33 6.48 33.52 3.41
309 371 3.334054 GCACCTTGGAGGAGGGCT 61.334 66.667 0.07 0.00 41.31 5.19
867 959 2.767424 TACCCCGAATCCACCCACCA 62.767 60.000 0.00 0.00 0.00 4.17
1218 1343 1.151777 CGTGCTGTCCGTTTGTGAGT 61.152 55.000 0.00 0.00 0.00 3.41
1250 1375 3.141398 GAGGTGATCTGTTTGTTGCTCA 58.859 45.455 0.00 0.00 0.00 4.26
1255 1380 1.581934 TCTGTTTGTTGCTCAGGTCG 58.418 50.000 0.00 0.00 0.00 4.79
1272 1397 2.285977 GTCGTCTTTGTTGTTGGTCCT 58.714 47.619 0.00 0.00 0.00 3.85
1460 3326 9.178758 CTGTTAGCCACTCTTATTAAAAAGGAT 57.821 33.333 0.00 0.00 0.00 3.24
1465 3331 9.057089 AGCCACTCTTATTAAAAAGGATATTCG 57.943 33.333 0.00 0.00 0.00 3.34
1519 3385 3.186119 GACTCTCAGTCTGCATAACTGC 58.814 50.000 19.51 6.42 43.09 4.40
1520 3386 3.119173 GACTCTCAGTCTGCATAACTGCT 60.119 47.826 19.51 6.50 42.29 4.24
1521 3387 4.969121 GACTCTCAGTCTGCATAACTGCTC 60.969 50.000 19.51 10.38 42.29 4.26
1522 3388 7.342936 GACTCTCAGTCTGCATAACTGCTCA 62.343 48.000 19.51 6.74 42.29 4.26
1523 3389 8.563127 GACTCTCAGTCTGCATAACTGCTCAT 62.563 46.154 19.51 9.03 42.29 2.90
1530 3396 1.678101 GCATAACTGCTCATCCAACCC 59.322 52.381 0.00 0.00 45.32 4.11
1531 3397 2.945440 GCATAACTGCTCATCCAACCCA 60.945 50.000 0.00 0.00 45.32 4.51
1532 3398 2.787473 TAACTGCTCATCCAACCCAG 57.213 50.000 0.00 0.00 0.00 4.45
1533 3399 0.610232 AACTGCTCATCCAACCCAGC 60.610 55.000 0.00 0.00 0.00 4.85
1534 3400 1.001764 CTGCTCATCCAACCCAGCA 60.002 57.895 0.00 0.00 39.58 4.41
1535 3401 0.395311 CTGCTCATCCAACCCAGCAT 60.395 55.000 0.00 0.00 41.00 3.79
1536 3402 0.681887 TGCTCATCCAACCCAGCATG 60.682 55.000 0.00 0.00 36.96 4.06
1537 3403 0.394762 GCTCATCCAACCCAGCATGA 60.395 55.000 0.00 0.00 39.69 3.07
1538 3404 1.676746 CTCATCCAACCCAGCATGAG 58.323 55.000 0.00 0.00 39.69 2.90
1539 3405 0.256752 TCATCCAACCCAGCATGAGG 59.743 55.000 0.00 0.00 39.69 3.86
1540 3406 0.033796 CATCCAACCCAGCATGAGGT 60.034 55.000 0.00 0.00 40.64 3.85
1541 3407 1.212688 CATCCAACCCAGCATGAGGTA 59.787 52.381 0.00 0.00 38.46 3.08
1542 3408 1.595311 TCCAACCCAGCATGAGGTAT 58.405 50.000 0.00 0.00 38.46 2.73
1543 3409 1.490490 TCCAACCCAGCATGAGGTATC 59.510 52.381 0.00 0.00 38.46 2.24
1544 3410 1.212688 CCAACCCAGCATGAGGTATCA 59.787 52.381 0.00 0.00 38.46 2.15
1546 3412 3.144506 CAACCCAGCATGAGGTATCATC 58.855 50.000 0.00 0.00 44.58 2.92
1547 3413 2.411583 ACCCAGCATGAGGTATCATCA 58.588 47.619 0.00 0.00 44.58 3.07
1548 3414 2.984604 ACCCAGCATGAGGTATCATCAT 59.015 45.455 0.00 0.00 44.58 2.45
1549 3415 3.396946 ACCCAGCATGAGGTATCATCATT 59.603 43.478 0.00 0.00 44.58 2.57
1550 3416 4.598807 ACCCAGCATGAGGTATCATCATTA 59.401 41.667 0.00 0.00 44.58 1.90
1551 3417 5.183969 CCCAGCATGAGGTATCATCATTAG 58.816 45.833 0.00 0.00 44.58 1.73
1552 3418 4.634883 CCAGCATGAGGTATCATCATTAGC 59.365 45.833 0.00 0.00 44.58 3.09
1600 3466 1.819632 CCGCAGCTAAAATCGGCCT 60.820 57.895 0.00 0.00 35.20 5.19
1747 3643 0.817634 CAAAACAGCTGGTGTCCGGA 60.818 55.000 19.93 0.00 39.03 5.14
3056 5082 1.131638 AGGGCACACTGTCTTCTTGA 58.868 50.000 0.00 0.00 0.00 3.02
3122 5148 0.617249 GGGGGAATGTGGGCAATTGA 60.617 55.000 10.34 0.00 0.00 2.57
3130 5156 3.951775 TGTGGGCAATTGATGGTTAAC 57.048 42.857 10.34 0.00 0.00 2.01
3146 5172 6.488769 TGGTTAACTGTGGAGTTTCTTCTA 57.511 37.500 5.42 0.00 39.56 2.10
3219 5245 8.435982 TCCATTTACATCCAAACCAAGAAAAAT 58.564 29.630 0.00 0.00 0.00 1.82
3471 5499 3.127030 CCGCTTACTTTTTAGGGCTTCTG 59.873 47.826 0.00 0.00 0.00 3.02
3634 5662 9.987272 AAAATCCATTACAAAAGAAAGAGAAGG 57.013 29.630 0.00 0.00 0.00 3.46
3800 5828 5.053145 TGCCATGTACAAACCAAATTGTTC 58.947 37.500 0.00 0.00 40.52 3.18
3827 5855 5.190528 TCTCTCTTTGCCATACCTCTTTCAT 59.809 40.000 0.00 0.00 0.00 2.57
3938 5966 4.286032 TCAGGTTCTATTGGCTAACTGTGT 59.714 41.667 0.00 0.00 0.00 3.72
3986 6014 4.095483 ACATGTACTGCAATTTGCTCTAGC 59.905 41.667 21.19 9.09 45.31 3.42
4109 6141 4.700213 TCTTATCTGGGTTGCTTTGCTTAC 59.300 41.667 0.00 0.00 0.00 2.34
4154 6186 7.958053 ACTCGTTTTTGCTAGTACACTTATT 57.042 32.000 0.00 0.00 0.00 1.40
4155 6187 8.374327 ACTCGTTTTTGCTAGTACACTTATTT 57.626 30.769 0.00 0.00 0.00 1.40
4156 6188 8.833493 ACTCGTTTTTGCTAGTACACTTATTTT 58.167 29.630 0.00 0.00 0.00 1.82
4157 6189 9.659830 CTCGTTTTTGCTAGTACACTTATTTTT 57.340 29.630 0.00 0.00 0.00 1.94
4189 6637 8.198778 TGTAGATATAACGATTGCTTAACCACA 58.801 33.333 0.00 0.00 0.00 4.17
4208 6656 0.317938 AACGCTGTGAGAGTGTCGAC 60.318 55.000 9.11 9.11 45.06 4.20
4240 6689 0.749818 TCAAAACTGCGGCTCAACCA 60.750 50.000 0.00 0.00 39.03 3.67
4358 6807 9.774742 GAAATGAAATTAGTTGCCTACTTGTAG 57.225 33.333 1.07 1.07 33.67 2.74
4359 6808 8.863872 AATGAAATTAGTTGCCTACTTGTAGT 57.136 30.769 6.99 0.00 38.33 2.73
4379 6828 4.290093 AGTCATTCTACTATCACCAGGCA 58.710 43.478 0.00 0.00 0.00 4.75
4421 6870 9.632638 ATCTTGGTAATTAATATGTGCTCTTGT 57.367 29.630 0.00 0.00 0.00 3.16
4462 6915 2.475666 GCCTGAGGCTTGTAGCTTG 58.524 57.895 17.96 0.00 46.69 4.01
4513 6966 8.854614 AAGTGCCAGATATAATTTAGGATGAC 57.145 34.615 0.00 0.00 0.00 3.06
4537 6990 6.483974 ACAAATGTGTTATTTGTGGTCGTAGA 59.516 34.615 14.98 0.00 46.67 2.59
4563 7016 0.168128 CTCGGTTCCAATTTCGTGGC 59.832 55.000 0.00 0.00 38.68 5.01
4573 7026 1.600023 ATTTCGTGGCGTTCCTTTCA 58.400 45.000 0.00 0.00 0.00 2.69
4639 7092 4.006319 AGAGTAGCAGAATTTGTTCTGGC 58.994 43.478 17.08 10.73 46.37 4.85
4714 7167 5.997746 ACTGCACTGACATGTAACTTATTGT 59.002 36.000 0.00 0.00 0.00 2.71
4838 7293 6.096695 ACGTCTTTTTGTTGTTTGCACTAAT 58.903 32.000 0.00 0.00 0.00 1.73
4946 7401 9.674824 GATTTAGTTGGAATATTGAGATGCTTG 57.325 33.333 0.00 0.00 0.00 4.01
5234 7689 2.029918 CCTTGCTTTTGTGCCCTTAGAC 60.030 50.000 0.00 0.00 0.00 2.59
5272 7727 8.243426 GTGTTGGCATCTGTCAATATTTTCTTA 58.757 33.333 0.00 0.00 42.06 2.10
5414 7869 6.882656 TGAGGATAGTTTGAATTCTGAGGAG 58.117 40.000 7.05 0.00 0.00 3.69
5465 7920 3.078837 TGAAGGGCGAAAAAGGATACAC 58.921 45.455 0.00 0.00 41.41 2.90
5504 7959 5.048434 CCAAATTGAGAAAGAGAAGGTGTCC 60.048 44.000 0.00 0.00 0.00 4.02
5513 7968 2.430367 AAGGTGTCCGCCTTGGTC 59.570 61.111 11.21 0.00 46.28 4.02
5633 8089 5.023533 CTTAGGGCATGTACTAAGAAGCA 57.976 43.478 23.11 1.21 45.63 3.91
5661 8117 1.834856 CTGCTGCCTCACCTCTTCCA 61.835 60.000 0.00 0.00 0.00 3.53
5691 8147 9.193806 AGATAAATTTGAATGAAGCTATGGTGT 57.806 29.630 0.00 0.00 0.00 4.16
5692 8148 9.241317 GATAAATTTGAATGAAGCTATGGTGTG 57.759 33.333 0.00 0.00 0.00 3.82
5693 8149 6.594788 AATTTGAATGAAGCTATGGTGTGT 57.405 33.333 0.00 0.00 0.00 3.72
5694 8150 5.375417 TTTGAATGAAGCTATGGTGTGTG 57.625 39.130 0.00 0.00 0.00 3.82
5753 8209 4.560819 CGTCATCTTTCTTTTCCTCTCTCG 59.439 45.833 0.00 0.00 0.00 4.04
5796 8252 1.966451 CCAAGCCGTGGTCCTGAAC 60.966 63.158 0.00 0.00 43.20 3.18
5809 8265 0.835941 CCTGAACCCAGCAGAGCTAT 59.164 55.000 0.00 0.00 36.40 2.97
5826 8282 2.898705 CTATGAAGCTCACACCACCTC 58.101 52.381 0.00 0.00 0.00 3.85
5830 8286 4.008933 GCTCACACCACCTCGCCT 62.009 66.667 0.00 0.00 0.00 5.52
5856 8312 1.901650 CTGCCTCGTCGCTTTTGTCC 61.902 60.000 0.00 0.00 0.00 4.02
5858 8314 2.380410 CCTCGTCGCTTTTGTCCGG 61.380 63.158 0.00 0.00 0.00 5.14
5896 8353 0.172352 GCAGGAGTCCGTTCTCTCTG 59.828 60.000 2.76 13.04 36.63 3.35
5914 8371 2.202388 CAAGCAGCATGTTCGGCG 60.202 61.111 0.00 0.00 39.31 6.46
5935 8392 4.681978 GTGGCGTTCGGCAGGACT 62.682 66.667 20.64 0.00 46.16 3.85
5937 8394 2.355986 TGGCGTTCGGCAGGACTAT 61.356 57.895 16.77 0.00 46.16 2.12
6083 8540 1.404391 CCCTTCATGCATGTGCTCTTC 59.596 52.381 25.43 0.00 42.66 2.87
6151 8608 9.336171 AGTTTGCATTTGTAACCATTTGTATTT 57.664 25.926 0.00 0.00 0.00 1.40
6179 8636 2.221169 CATCACGGAGAGAGGAGAGAG 58.779 57.143 0.00 0.00 28.69 3.20
6180 8637 1.574263 TCACGGAGAGAGGAGAGAGA 58.426 55.000 0.00 0.00 0.00 3.10
6342 8800 7.447238 CACATTGGAGAACCCTAAACTCTTTTA 59.553 37.037 0.00 0.00 35.38 1.52
6569 9027 0.749649 AGGCTCAGATGAAGGTAGCG 59.250 55.000 0.00 0.00 33.96 4.26
6950 9409 0.179108 GTTATCTTGCCGCTCCGACT 60.179 55.000 0.00 0.00 0.00 4.18
6972 9431 5.707298 ACTCAAGATGTTGATTGGTTGTAGG 59.293 40.000 5.65 0.00 41.96 3.18
6973 9432 5.630121 TCAAGATGTTGATTGGTTGTAGGT 58.370 37.500 0.23 0.00 37.79 3.08
6993 9453 5.846203 AGGTGAAAACATCCTGTCAAAATG 58.154 37.500 0.00 0.00 0.00 2.32
7005 9465 6.761312 TCCTGTCAAAATGATGAAAATGCTT 58.239 32.000 0.00 0.00 0.00 3.91
7025 9485 1.760086 TAGAGCAGAGGAGGCTGGC 60.760 63.158 0.00 0.00 42.78 4.85
7026 9486 2.235602 TAGAGCAGAGGAGGCTGGCT 62.236 60.000 2.24 2.24 42.78 4.75
7028 9488 1.306482 AGCAGAGGAGGCTGGCTAA 60.306 57.895 2.77 0.00 40.80 3.09
7031 9491 1.126488 CAGAGGAGGCTGGCTAATGA 58.874 55.000 2.77 0.00 32.26 2.57
7064 9524 3.064931 GGCTGTAGTAGTGTGTGGAAAC 58.935 50.000 0.00 0.00 0.00 2.78
7073 9533 2.096248 GTGTGTGGAAACCCAACAAGA 58.904 47.619 0.00 0.00 35.07 3.02
7087 9554 4.478699 CCAACAAGAATGTACGTACTCGA 58.521 43.478 25.12 6.98 39.40 4.04
7092 9567 2.098770 AGAATGTACGTACTCGAAGGGC 59.901 50.000 25.12 7.34 40.62 5.19
7140 9615 4.070716 CCTCCTTGTGATGAATCATAGCC 58.929 47.826 0.00 0.00 39.30 3.93
7153 9628 4.825546 ATCATAGCCAAGAAATGAAGCG 57.174 40.909 0.00 0.00 33.60 4.68
7173 9648 8.564574 TGAAGCGTGTACAAAGAAGATTTATTT 58.435 29.630 0.00 0.00 0.00 1.40
7206 9681 1.648116 AGGAGGCATGCCAAACAAAT 58.352 45.000 37.18 16.13 38.92 2.32
7207 9682 2.818921 AGGAGGCATGCCAAACAAATA 58.181 42.857 37.18 0.00 38.92 1.40
7208 9683 2.497273 AGGAGGCATGCCAAACAAATAC 59.503 45.455 37.18 16.59 38.92 1.89
7209 9684 2.497273 GGAGGCATGCCAAACAAATACT 59.503 45.455 37.18 13.69 38.92 2.12
7210 9685 3.514645 GAGGCATGCCAAACAAATACTG 58.485 45.455 37.18 0.00 38.92 2.74
7228 9703 7.730364 AATACTGTACAACAAGAAAGGTGAG 57.270 36.000 0.00 0.00 0.00 3.51
7276 9772 8.560355 TCAAATATCCATGGGAATTATGTACG 57.440 34.615 13.02 0.00 34.34 3.67
7277 9773 8.379331 TCAAATATCCATGGGAATTATGTACGA 58.621 33.333 13.02 1.38 34.34 3.43
7278 9774 9.177608 CAAATATCCATGGGAATTATGTACGAT 57.822 33.333 13.02 0.00 34.34 3.73
7284 9821 6.313905 CCATGGGAATTATGTACGATCTAAGC 59.686 42.308 2.85 0.00 0.00 3.09
7310 9847 9.948964 CCTTGTGTGATATCCATGAGAATTATA 57.051 33.333 0.00 0.00 0.00 0.98
7343 9880 7.829211 ACTACAACCTAAATATTGTGTGCTCAT 59.171 33.333 0.00 0.00 39.36 2.90
7349 9886 1.807139 TATTGTGTGCTCATGTGCGT 58.193 45.000 14.53 0.35 35.36 5.24
7378 9915 6.421377 AAGGCAAACAACAATTTTCAGTTC 57.579 33.333 0.00 0.00 0.00 3.01
7380 9917 4.328712 GGCAAACAACAATTTTCAGTTCGT 59.671 37.500 0.00 0.00 0.00 3.85
7382 9919 5.723678 GCAAACAACAATTTTCAGTTCGTGG 60.724 40.000 0.00 0.00 0.00 4.94
7383 9920 3.443976 ACAACAATTTTCAGTTCGTGGC 58.556 40.909 0.00 0.00 0.00 5.01
7387 9924 4.499183 ACAATTTTCAGTTCGTGGCAAAA 58.501 34.783 0.00 0.00 0.00 2.44
7440 9977 6.716934 TGTGCTACCCTTGAAACAAATTTA 57.283 33.333 0.00 0.00 0.00 1.40
7441 9978 7.113658 TGTGCTACCCTTGAAACAAATTTAA 57.886 32.000 0.00 0.00 0.00 1.52
7442 9979 7.556844 TGTGCTACCCTTGAAACAAATTTAAA 58.443 30.769 0.00 0.00 0.00 1.52
7443 9980 8.041323 TGTGCTACCCTTGAAACAAATTTAAAA 58.959 29.630 0.00 0.00 0.00 1.52
7444 9981 8.547894 GTGCTACCCTTGAAACAAATTTAAAAG 58.452 33.333 0.00 0.00 0.00 2.27
7445 9982 8.478877 TGCTACCCTTGAAACAAATTTAAAAGA 58.521 29.630 0.00 0.00 0.00 2.52
7446 9983 9.320352 GCTACCCTTGAAACAAATTTAAAAGAA 57.680 29.630 0.00 0.00 0.00 2.52
7449 9986 9.679661 ACCCTTGAAACAAATTTAAAAGAACAT 57.320 25.926 0.00 0.00 0.00 2.71
7450 9987 9.934190 CCCTTGAAACAAATTTAAAAGAACATG 57.066 29.630 0.00 0.00 0.00 3.21
7465 10002 6.754702 AAGAACATGTTTCATCTCTGATGG 57.245 37.500 13.36 0.00 0.00 3.51
7483 10020 4.892345 TGATGGAAAACATGTCTTTGGTGA 59.108 37.500 0.00 0.00 40.72 4.02
7505 10042 3.487120 AAGACCAACCAGTTACACCTC 57.513 47.619 0.00 0.00 0.00 3.85
7508 10045 1.142262 ACCAACCAGTTACACCTCACC 59.858 52.381 0.00 0.00 0.00 4.02
7519 10056 3.788227 ACACCTCACCAAAGAATAGCA 57.212 42.857 0.00 0.00 0.00 3.49
7524 10061 4.202461 ACCTCACCAAAGAATAGCAAGTCA 60.202 41.667 0.00 0.00 0.00 3.41
7556 10093 0.803380 GCTGTTTCATGCGCATTCCC 60.803 55.000 22.81 9.58 0.00 3.97
7564 10101 1.227999 ATGCGCATTCCCGTAATCCG 61.228 55.000 19.28 0.00 31.61 4.18
7575 10112 2.350580 CCCGTAATCCGTTCGAGATCTC 60.351 54.545 13.05 13.05 33.66 2.75
7587 10124 1.191868 CGAGATCTCGTTGCATCATGC 59.808 52.381 32.23 1.35 46.99 4.06
7588 10125 2.481854 GAGATCTCGTTGCATCATGCT 58.518 47.619 11.84 0.00 45.31 3.79
7589 10126 3.646946 GAGATCTCGTTGCATCATGCTA 58.353 45.455 11.84 0.00 45.31 3.49
7590 10127 4.244066 GAGATCTCGTTGCATCATGCTAT 58.756 43.478 11.84 0.00 45.31 2.97
7591 10128 5.397142 AGATCTCGTTGCATCATGCTATA 57.603 39.130 11.84 0.00 45.31 1.31
7592 10129 5.167121 AGATCTCGTTGCATCATGCTATAC 58.833 41.667 11.84 5.68 45.31 1.47
7593 10130 3.308530 TCTCGTTGCATCATGCTATACG 58.691 45.455 19.71 19.71 45.31 3.06
7594 10131 3.004315 TCTCGTTGCATCATGCTATACGA 59.996 43.478 23.88 23.88 45.31 3.43
7595 10132 3.712187 TCGTTGCATCATGCTATACGAA 58.288 40.909 23.52 12.90 45.31 3.85
7596 10133 4.306600 TCGTTGCATCATGCTATACGAAT 58.693 39.130 23.52 0.00 45.31 3.34
7597 10134 5.465935 TCGTTGCATCATGCTATACGAATA 58.534 37.500 23.52 9.28 45.31 1.75
7598 10135 5.923684 TCGTTGCATCATGCTATACGAATAA 59.076 36.000 23.52 9.02 45.31 1.40
7599 10136 6.422400 TCGTTGCATCATGCTATACGAATAAA 59.578 34.615 23.52 8.75 45.31 1.40
7600 10137 7.117667 TCGTTGCATCATGCTATACGAATAAAT 59.882 33.333 23.52 0.00 45.31 1.40
7601 10138 8.379902 CGTTGCATCATGCTATACGAATAAATA 58.620 33.333 20.60 0.00 45.31 1.40
7616 10153 8.791327 ACGAATAAATATATGTGCATCCATCA 57.209 30.769 0.00 0.00 0.00 3.07
7617 10154 8.668353 ACGAATAAATATATGTGCATCCATCAC 58.332 33.333 0.00 0.00 35.14 3.06
7618 10155 7.847564 CGAATAAATATATGTGCATCCATCACG 59.152 37.037 0.00 0.00 37.26 4.35
7619 10156 8.565896 AATAAATATATGTGCATCCATCACGT 57.434 30.769 0.00 0.00 37.26 4.49
7620 10157 9.665719 AATAAATATATGTGCATCCATCACGTA 57.334 29.630 0.00 0.00 39.41 3.57
7621 10158 9.836864 ATAAATATATGTGCATCCATCACGTAT 57.163 29.630 11.20 11.20 44.36 3.06
7622 10159 7.543947 AATATATGTGCATCCATCACGTATG 57.456 36.000 14.58 0.00 42.97 2.39
7633 10170 3.595173 CATCACGTATGGAAACCACTGA 58.405 45.455 0.00 0.00 35.80 3.41
7634 10171 3.034721 TCACGTATGGAAACCACTGAC 57.965 47.619 0.00 0.00 35.80 3.51
7635 10172 1.724623 CACGTATGGAAACCACTGACG 59.275 52.381 15.23 15.23 40.73 4.35
7636 10173 0.719465 CGTATGGAAACCACTGACGC 59.281 55.000 0.00 0.00 35.80 5.19
7637 10174 0.719465 GTATGGAAACCACTGACGCG 59.281 55.000 3.53 3.53 35.80 6.01
7638 10175 0.604073 TATGGAAACCACTGACGCGA 59.396 50.000 15.93 0.00 35.80 5.87
7639 10176 0.250124 ATGGAAACCACTGACGCGAA 60.250 50.000 15.93 0.00 35.80 4.70
7640 10177 0.250124 TGGAAACCACTGACGCGAAT 60.250 50.000 15.93 0.00 0.00 3.34
7641 10178 0.872388 GGAAACCACTGACGCGAATT 59.128 50.000 15.93 0.00 0.00 2.17
7642 10179 1.265905 GGAAACCACTGACGCGAATTT 59.734 47.619 15.93 1.80 0.00 1.82
7643 10180 2.287368 GGAAACCACTGACGCGAATTTT 60.287 45.455 15.93 1.55 0.00 1.82
7644 10181 3.368495 GAAACCACTGACGCGAATTTTT 58.632 40.909 15.93 2.15 0.00 1.94
7645 10182 2.399396 ACCACTGACGCGAATTTTTG 57.601 45.000 15.93 1.36 0.00 2.44
7646 10183 1.001815 ACCACTGACGCGAATTTTTGG 60.002 47.619 15.93 13.57 0.00 3.28
7647 10184 1.052287 CACTGACGCGAATTTTTGGC 58.948 50.000 15.93 0.00 0.00 4.52
7648 10185 0.951558 ACTGACGCGAATTTTTGGCT 59.048 45.000 15.93 0.00 31.68 4.75
7649 10186 1.069227 ACTGACGCGAATTTTTGGCTC 60.069 47.619 15.93 0.00 31.68 4.70
7650 10187 0.239879 TGACGCGAATTTTTGGCTCC 59.760 50.000 15.93 0.00 31.68 4.70
7651 10188 0.521735 GACGCGAATTTTTGGCTCCT 59.478 50.000 15.93 0.00 31.68 3.69
7652 10189 0.240945 ACGCGAATTTTTGGCTCCTG 59.759 50.000 15.93 0.00 31.68 3.86
7653 10190 0.456653 CGCGAATTTTTGGCTCCTGG 60.457 55.000 0.00 0.00 31.68 4.45
7654 10191 0.108662 GCGAATTTTTGGCTCCTGGG 60.109 55.000 0.00 0.00 0.00 4.45
7655 10192 1.256812 CGAATTTTTGGCTCCTGGGT 58.743 50.000 0.00 0.00 0.00 4.51
7656 10193 1.067635 CGAATTTTTGGCTCCTGGGTG 60.068 52.381 0.00 0.00 0.00 4.61
7657 10194 0.686789 AATTTTTGGCTCCTGGGTGC 59.313 50.000 5.24 5.24 0.00 5.01
7658 10195 0.178924 ATTTTTGGCTCCTGGGTGCT 60.179 50.000 12.44 0.00 35.28 4.40
7659 10196 0.827507 TTTTTGGCTCCTGGGTGCTC 60.828 55.000 12.44 4.92 35.28 4.26
7660 10197 2.713531 TTTTGGCTCCTGGGTGCTCC 62.714 60.000 12.44 0.00 35.28 4.70
7663 10200 4.459089 GCTCCTGGGTGCTCCGAC 62.459 72.222 6.45 0.00 38.76 4.79
7664 10201 3.775654 CTCCTGGGTGCTCCGACC 61.776 72.222 0.00 0.00 38.76 4.79
7665 10202 4.316823 TCCTGGGTGCTCCGACCT 62.317 66.667 0.00 0.00 38.76 3.85
7666 10203 3.775654 CCTGGGTGCTCCGACCTC 61.776 72.222 0.00 0.00 38.76 3.85
7667 10204 3.775654 CTGGGTGCTCCGACCTCC 61.776 72.222 0.00 0.00 38.76 4.30
7668 10205 4.316823 TGGGTGCTCCGACCTCCT 62.317 66.667 0.00 0.00 38.76 3.69
7669 10206 2.043248 GGGTGCTCCGACCTCCTA 60.043 66.667 0.00 0.00 36.14 2.94
7670 10207 1.457831 GGGTGCTCCGACCTCCTAT 60.458 63.158 0.00 0.00 36.14 2.57
7671 10208 0.178970 GGGTGCTCCGACCTCCTATA 60.179 60.000 0.00 0.00 36.14 1.31
7672 10209 1.700955 GGTGCTCCGACCTCCTATAA 58.299 55.000 0.00 0.00 32.69 0.98
7673 10210 2.037144 GGTGCTCCGACCTCCTATAAA 58.963 52.381 0.00 0.00 32.69 1.40
7674 10211 2.223994 GGTGCTCCGACCTCCTATAAAC 60.224 54.545 0.00 0.00 32.69 2.01
7675 10212 2.429610 GTGCTCCGACCTCCTATAAACA 59.570 50.000 0.00 0.00 0.00 2.83
7676 10213 3.069729 GTGCTCCGACCTCCTATAAACAT 59.930 47.826 0.00 0.00 0.00 2.71
7677 10214 3.709653 TGCTCCGACCTCCTATAAACATT 59.290 43.478 0.00 0.00 0.00 2.71
7678 10215 4.897076 TGCTCCGACCTCCTATAAACATTA 59.103 41.667 0.00 0.00 0.00 1.90
7679 10216 5.364446 TGCTCCGACCTCCTATAAACATTAA 59.636 40.000 0.00 0.00 0.00 1.40
7680 10217 6.126997 TGCTCCGACCTCCTATAAACATTAAA 60.127 38.462 0.00 0.00 0.00 1.52
7681 10218 6.764560 GCTCCGACCTCCTATAAACATTAAAA 59.235 38.462 0.00 0.00 0.00 1.52
7682 10219 7.444487 GCTCCGACCTCCTATAAACATTAAAAT 59.556 37.037 0.00 0.00 0.00 1.82
7683 10220 9.991906 CTCCGACCTCCTATAAACATTAAAATA 57.008 33.333 0.00 0.00 0.00 1.40
7746 10283 4.537260 CCAAATCTGGGTGCCCAA 57.463 55.556 11.54 3.32 46.63 4.12
7747 10284 2.995480 CCAAATCTGGGTGCCCAAT 58.005 52.632 11.54 5.44 46.63 3.16
7748 10285 0.826062 CCAAATCTGGGTGCCCAATC 59.174 55.000 11.54 0.00 46.63 2.67
7749 10286 1.620524 CCAAATCTGGGTGCCCAATCT 60.621 52.381 11.54 0.00 46.63 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.749841 ACTGAATATAGATTTCATGAGCGTAC 57.250 34.615 0.00 0.00 32.94 3.67
1 2 8.576442 TGACTGAATATAGATTTCATGAGCGTA 58.424 33.333 0.00 0.00 32.94 4.42
2 3 7.436933 TGACTGAATATAGATTTCATGAGCGT 58.563 34.615 0.00 0.00 32.94 5.07
3 4 7.063191 CCTGACTGAATATAGATTTCATGAGCG 59.937 40.741 0.00 0.00 32.94 5.03
4 5 7.333921 CCCTGACTGAATATAGATTTCATGAGC 59.666 40.741 0.00 0.00 32.94 4.26
5 6 7.823310 CCCCTGACTGAATATAGATTTCATGAG 59.177 40.741 0.00 0.00 32.94 2.90
6 7 7.683578 CCCCTGACTGAATATAGATTTCATGA 58.316 38.462 0.00 0.00 32.94 3.07
7 8 6.373774 GCCCCTGACTGAATATAGATTTCATG 59.626 42.308 0.00 0.00 32.94 3.07
8 9 6.479884 GCCCCTGACTGAATATAGATTTCAT 58.520 40.000 0.00 0.00 32.94 2.57
9 10 5.511373 CGCCCCTGACTGAATATAGATTTCA 60.511 44.000 0.00 0.00 0.00 2.69
10 11 4.932200 CGCCCCTGACTGAATATAGATTTC 59.068 45.833 0.00 0.00 0.00 2.17
11 12 4.593206 TCGCCCCTGACTGAATATAGATTT 59.407 41.667 0.00 0.00 0.00 2.17
12 13 4.160329 TCGCCCCTGACTGAATATAGATT 58.840 43.478 0.00 0.00 0.00 2.40
13 14 3.779444 TCGCCCCTGACTGAATATAGAT 58.221 45.455 0.00 0.00 0.00 1.98
14 15 3.238788 TCGCCCCTGACTGAATATAGA 57.761 47.619 0.00 0.00 0.00 1.98
15 16 3.069586 TGTTCGCCCCTGACTGAATATAG 59.930 47.826 0.00 0.00 0.00 1.31
16 17 3.035363 TGTTCGCCCCTGACTGAATATA 58.965 45.455 0.00 0.00 0.00 0.86
17 18 1.837439 TGTTCGCCCCTGACTGAATAT 59.163 47.619 0.00 0.00 0.00 1.28
18 19 1.271856 TGTTCGCCCCTGACTGAATA 58.728 50.000 0.00 0.00 0.00 1.75
19 20 0.400213 TTGTTCGCCCCTGACTGAAT 59.600 50.000 0.00 0.00 0.00 2.57
20 21 0.250295 CTTGTTCGCCCCTGACTGAA 60.250 55.000 0.00 0.00 0.00 3.02
21 22 1.371183 CTTGTTCGCCCCTGACTGA 59.629 57.895 0.00 0.00 0.00 3.41
22 23 1.672356 CCTTGTTCGCCCCTGACTG 60.672 63.158 0.00 0.00 0.00 3.51
23 24 2.750350 CCTTGTTCGCCCCTGACT 59.250 61.111 0.00 0.00 0.00 3.41
24 25 3.056328 GCCTTGTTCGCCCCTGAC 61.056 66.667 0.00 0.00 0.00 3.51
25 26 3.126703 TTGCCTTGTTCGCCCCTGA 62.127 57.895 0.00 0.00 0.00 3.86
26 27 2.597217 TTGCCTTGTTCGCCCCTG 60.597 61.111 0.00 0.00 0.00 4.45
27 28 1.774894 TAGTTGCCTTGTTCGCCCCT 61.775 55.000 0.00 0.00 0.00 4.79
28 29 0.679960 ATAGTTGCCTTGTTCGCCCC 60.680 55.000 0.00 0.00 0.00 5.80
29 30 0.451783 CATAGTTGCCTTGTTCGCCC 59.548 55.000 0.00 0.00 0.00 6.13
30 31 0.179163 GCATAGTTGCCTTGTTCGCC 60.179 55.000 0.00 0.00 43.38 5.54
31 32 3.312709 GCATAGTTGCCTTGTTCGC 57.687 52.632 0.00 0.00 43.38 4.70
78 79 1.804748 CTTCACCGGTTTTCCTGCTAC 59.195 52.381 2.97 0.00 37.95 3.58
92 131 1.327764 GCTATACTTGTGCGCTTCACC 59.672 52.381 9.73 0.00 45.03 4.02
137 176 3.460648 GGGATCTTCAGTGTTCCCG 57.539 57.895 7.22 0.00 38.59 5.14
148 187 7.995488 CCAGTACAGAGAAATATTTGGGATCTT 59.005 37.037 5.17 0.00 0.00 2.40
524 586 2.166664 CCAGTTCCTCTTCTCTTACCGG 59.833 54.545 0.00 0.00 0.00 5.28
1246 1371 1.583054 ACAACAAAGACGACCTGAGC 58.417 50.000 0.00 0.00 0.00 4.26
1250 1375 2.285977 GACCAACAACAAAGACGACCT 58.714 47.619 0.00 0.00 0.00 3.85
1255 1380 3.192633 ACACAAGGACCAACAACAAAGAC 59.807 43.478 0.00 0.00 0.00 3.01
1338 1731 2.666526 GCTATAGCAGGGCACGCC 60.667 66.667 20.01 0.00 41.59 5.68
1460 3326 9.719355 TTGCTTTCCTTATATAGCATTCGAATA 57.281 29.630 10.97 0.00 42.60 1.75
1465 3331 7.596621 GCCTTTTGCTTTCCTTATATAGCATTC 59.403 37.037 0.00 0.00 42.60 2.67
1511 3377 2.947652 CTGGGTTGGATGAGCAGTTATG 59.052 50.000 0.00 0.00 0.00 1.90
1512 3378 2.684927 GCTGGGTTGGATGAGCAGTTAT 60.685 50.000 0.00 0.00 0.00 1.89
1513 3379 1.340017 GCTGGGTTGGATGAGCAGTTA 60.340 52.381 0.00 0.00 0.00 2.24
1514 3380 0.610232 GCTGGGTTGGATGAGCAGTT 60.610 55.000 0.00 0.00 0.00 3.16
1515 3381 1.001641 GCTGGGTTGGATGAGCAGT 60.002 57.895 0.00 0.00 0.00 4.40
1516 3382 0.395311 ATGCTGGGTTGGATGAGCAG 60.395 55.000 0.00 0.00 44.30 4.24
1517 3383 0.681887 CATGCTGGGTTGGATGAGCA 60.682 55.000 0.00 0.00 45.12 4.26
1518 3384 0.394762 TCATGCTGGGTTGGATGAGC 60.395 55.000 0.00 0.00 39.31 4.26
1519 3385 3.888424 TCATGCTGGGTTGGATGAG 57.112 52.632 0.00 0.00 39.31 2.90
1520 3386 0.256752 CCTCATGCTGGGTTGGATGA 59.743 55.000 0.00 0.00 41.34 2.92
1521 3387 0.033796 ACCTCATGCTGGGTTGGATG 60.034 55.000 8.97 0.00 37.16 3.51
1522 3388 1.595311 TACCTCATGCTGGGTTGGAT 58.405 50.000 9.44 0.00 37.07 3.41
1523 3389 1.490490 GATACCTCATGCTGGGTTGGA 59.510 52.381 9.44 0.00 37.07 3.53
1524 3390 1.212688 TGATACCTCATGCTGGGTTGG 59.787 52.381 9.44 0.00 37.07 3.77
1525 3391 2.715749 TGATACCTCATGCTGGGTTG 57.284 50.000 9.44 0.00 37.07 3.77
1526 3392 2.779430 TGATGATACCTCATGCTGGGTT 59.221 45.455 9.44 0.00 42.27 4.11
1527 3393 2.411583 TGATGATACCTCATGCTGGGT 58.588 47.619 8.97 9.09 42.27 4.51
1528 3394 3.715638 ATGATGATACCTCATGCTGGG 57.284 47.619 8.97 4.11 42.27 4.45
1529 3395 4.634883 GCTAATGATGATACCTCATGCTGG 59.365 45.833 3.48 3.48 42.27 4.85
1530 3396 5.489249 AGCTAATGATGATACCTCATGCTG 58.511 41.667 0.00 0.00 42.27 4.41
1531 3397 5.758790 AGCTAATGATGATACCTCATGCT 57.241 39.130 0.00 0.00 42.27 3.79
1532 3398 5.518128 CGTAGCTAATGATGATACCTCATGC 59.482 44.000 0.00 0.00 42.27 4.06
1533 3399 6.038985 CCGTAGCTAATGATGATACCTCATG 58.961 44.000 0.00 0.00 42.27 3.07
1534 3400 5.127845 CCCGTAGCTAATGATGATACCTCAT 59.872 44.000 0.00 0.00 44.93 2.90
1535 3401 4.462834 CCCGTAGCTAATGATGATACCTCA 59.537 45.833 0.00 0.00 35.41 3.86
1536 3402 4.463186 ACCCGTAGCTAATGATGATACCTC 59.537 45.833 0.00 0.00 0.00 3.85
1537 3403 4.417437 ACCCGTAGCTAATGATGATACCT 58.583 43.478 0.00 0.00 0.00 3.08
1538 3404 4.803098 ACCCGTAGCTAATGATGATACC 57.197 45.455 0.00 0.00 0.00 2.73
1539 3405 5.779922 TCAACCCGTAGCTAATGATGATAC 58.220 41.667 0.00 0.00 0.00 2.24
1540 3406 6.605471 ATCAACCCGTAGCTAATGATGATA 57.395 37.500 0.00 0.00 0.00 2.15
1541 3407 4.955811 TCAACCCGTAGCTAATGATGAT 57.044 40.909 0.00 0.00 0.00 2.45
1542 3408 4.955811 ATCAACCCGTAGCTAATGATGA 57.044 40.909 0.00 0.00 0.00 2.92
1543 3409 7.492669 CCTATAATCAACCCGTAGCTAATGATG 59.507 40.741 0.00 0.00 0.00 3.07
1544 3410 7.364762 CCCTATAATCAACCCGTAGCTAATGAT 60.365 40.741 0.00 0.00 0.00 2.45
1545 3411 6.070995 CCCTATAATCAACCCGTAGCTAATGA 60.071 42.308 0.00 0.00 0.00 2.57
1546 3412 6.106673 CCCTATAATCAACCCGTAGCTAATG 58.893 44.000 0.00 0.00 0.00 1.90
1547 3413 5.189145 CCCCTATAATCAACCCGTAGCTAAT 59.811 44.000 0.00 0.00 0.00 1.73
1548 3414 4.529377 CCCCTATAATCAACCCGTAGCTAA 59.471 45.833 0.00 0.00 0.00 3.09
1549 3415 4.091549 CCCCTATAATCAACCCGTAGCTA 58.908 47.826 0.00 0.00 0.00 3.32
1550 3416 2.904434 CCCCTATAATCAACCCGTAGCT 59.096 50.000 0.00 0.00 0.00 3.32
1551 3417 2.636403 ACCCCTATAATCAACCCGTAGC 59.364 50.000 0.00 0.00 0.00 3.58
1552 3418 4.591924 AGAACCCCTATAATCAACCCGTAG 59.408 45.833 0.00 0.00 0.00 3.51
1600 3466 1.272781 CGCAGAAAAACGGTTTTGCA 58.727 45.000 22.84 0.00 37.07 4.08
1747 3643 6.101223 AGATGAGGAAAATATAGGGTGGGAT 58.899 40.000 0.00 0.00 0.00 3.85
3056 5082 3.498397 CAGCGTGTTCACCTAAAGATGTT 59.502 43.478 0.00 0.00 0.00 2.71
3122 5148 5.941788 AGAAGAAACTCCACAGTTAACCAT 58.058 37.500 0.88 0.00 42.45 3.55
3130 5156 8.356657 AGATCGATAATAGAAGAAACTCCACAG 58.643 37.037 0.00 0.00 0.00 3.66
3219 5245 5.830457 TCCATATGTGTTCCTTGTTCAACAA 59.170 36.000 2.24 2.24 34.33 2.83
3428 5456 4.072131 GGAAGCAGTTACCTCAAACATCA 58.928 43.478 0.00 0.00 0.00 3.07
3634 5662 0.667792 GAGAACCAGTGACACTCGGC 60.668 60.000 18.45 5.84 0.00 5.54
3800 5828 3.450457 AGAGGTATGGCAAAGAGAGAGTG 59.550 47.826 0.00 0.00 0.00 3.51
4006 6036 5.600908 AAAACATGATTGAATTGCACAGC 57.399 34.783 0.00 0.00 0.00 4.40
4008 6038 9.269453 TCAATAAAAACATGATTGAATTGCACA 57.731 25.926 0.00 0.00 36.81 4.57
4109 6141 3.574284 TTTGGATGTGCCTTCATTTCG 57.426 42.857 0.00 0.00 37.63 3.46
4155 6187 7.990886 AGCAATCGTTATATCTACAGGGAAAAA 59.009 33.333 0.00 0.00 0.00 1.94
4156 6188 7.506114 AGCAATCGTTATATCTACAGGGAAAA 58.494 34.615 0.00 0.00 0.00 2.29
4157 6189 7.062749 AGCAATCGTTATATCTACAGGGAAA 57.937 36.000 0.00 0.00 0.00 3.13
4158 6190 6.665992 AGCAATCGTTATATCTACAGGGAA 57.334 37.500 0.00 0.00 0.00 3.97
4159 6191 6.665992 AAGCAATCGTTATATCTACAGGGA 57.334 37.500 0.00 0.00 0.00 4.20
4163 6195 8.198778 TGTGGTTAAGCAATCGTTATATCTACA 58.801 33.333 9.30 0.00 0.00 2.74
4189 6637 0.317938 GTCGACACTCTCACAGCGTT 60.318 55.000 11.55 0.00 0.00 4.84
4231 6680 4.320275 GCTTACAACTAAAGTGGTTGAGCC 60.320 45.833 10.92 0.00 44.58 4.70
4235 6684 7.148623 GCTACTAGCTTACAACTAAAGTGGTTG 60.149 40.741 0.00 3.26 42.41 3.77
4358 6807 4.672587 TGCCTGGTGATAGTAGAATGAC 57.327 45.455 0.00 0.00 0.00 3.06
4359 6808 5.366477 TGAATGCCTGGTGATAGTAGAATGA 59.634 40.000 0.00 0.00 0.00 2.57
4421 6870 8.107095 AGGCAACCTGACTTAATAAACTATGAA 58.893 33.333 0.00 0.00 24.46 2.57
4484 6937 9.866655 ATCCTAAATTATATCTGGCACTTTCAA 57.133 29.630 0.00 0.00 0.00 2.69
4513 6966 6.893759 TCTACGACCACAAATAACACATTTG 58.106 36.000 7.90 7.90 42.81 2.32
4537 6990 3.374058 CGAAATTGGAACCGAGCAAGTAT 59.626 43.478 0.00 0.00 0.00 2.12
4563 7016 8.073768 TCAAAACTAAGCTAAATGAAAGGAACG 58.926 33.333 0.00 0.00 0.00 3.95
4639 7092 8.449397 GCCAGAACATTAATCTATATTGAGCAG 58.551 37.037 0.00 0.00 0.00 4.24
4714 7167 3.078837 GCTACTTTGGTTTCATTCCCGA 58.921 45.455 0.00 0.00 0.00 5.14
4838 7293 7.092079 CCAATTCAATTGCTTATTGTGACTCA 58.908 34.615 18.23 0.00 43.41 3.41
4883 7338 5.360714 GCATCTGAGGGAATATCAAACCAAA 59.639 40.000 0.00 0.00 0.00 3.28
4946 7401 4.758674 TGGCAGATTTAGAGCTAATCATGC 59.241 41.667 16.03 16.03 0.00 4.06
5234 7689 5.347635 CAGATGCCAACACTCAAATCAAATG 59.652 40.000 0.00 0.00 0.00 2.32
5272 7727 8.396272 AGAAGTTAATGAAGTGTACTTTGCAT 57.604 30.769 0.00 0.00 36.11 3.96
5414 7869 4.957967 CGACGCTGTATTTCATGTTTGATC 59.042 41.667 0.00 0.00 0.00 2.92
5465 7920 0.323629 TTTGGGCAACTACCTCCTCG 59.676 55.000 0.00 0.00 0.00 4.63
5513 7968 2.097038 CGCTCTCTGTTGGGCTTCG 61.097 63.158 0.00 0.00 0.00 3.79
5604 8059 8.090788 TCTTAGTACATGCCCTAAGATTCTTT 57.909 34.615 21.82 0.00 42.46 2.52
5691 8147 1.451337 CGTTGGGTGATTGTGGCACA 61.451 55.000 17.96 17.96 37.99 4.57
5692 8148 1.285641 CGTTGGGTGATTGTGGCAC 59.714 57.895 11.55 11.55 35.56 5.01
5693 8149 1.900981 CCGTTGGGTGATTGTGGCA 60.901 57.895 0.00 0.00 0.00 4.92
5694 8150 1.586154 CTCCGTTGGGTGATTGTGGC 61.586 60.000 0.00 0.00 33.83 5.01
5745 8201 0.321671 TGAAAAGTGGGCGAGAGAGG 59.678 55.000 0.00 0.00 0.00 3.69
5753 8209 1.284297 GCATGCGTTGAAAAGTGGGC 61.284 55.000 0.00 0.00 0.00 5.36
5796 8252 3.003740 GCTTCATAGCTCTGCTGGG 57.996 57.895 1.96 0.00 44.27 4.45
5809 8265 1.367471 CGAGGTGGTGTGAGCTTCA 59.633 57.895 0.00 0.00 0.00 3.02
5816 8272 2.047844 CTCAGGCGAGGTGGTGTG 60.048 66.667 0.00 0.00 35.44 3.82
5836 8292 2.174349 CAAAAGCGACGAGGCAGC 59.826 61.111 0.00 0.00 34.64 5.25
5846 8302 1.741770 CTCCTCCCGGACAAAAGCG 60.742 63.158 0.73 0.00 34.92 4.68
5858 8314 1.756561 AGAAGAGCTCGCCTCCTCC 60.757 63.158 8.37 0.00 41.74 4.30
5896 8353 2.505557 GCCGAACATGCTGCTTGC 60.506 61.111 14.63 0.00 43.25 4.01
5927 8384 2.897350 GCGCCACATAGTCCTGCC 60.897 66.667 0.00 0.00 0.00 4.85
6083 8540 3.633235 CCAATCGACTCTACTTCATCCG 58.367 50.000 0.00 0.00 0.00 4.18
6151 8608 3.068732 CCTCTCTCCGTGATGCATAAAGA 59.931 47.826 0.00 0.00 0.00 2.52
6179 8636 6.144402 CACAAGCAATACAAAACCATGTTCTC 59.856 38.462 0.00 0.00 34.75 2.87
6180 8637 5.984926 CACAAGCAATACAAAACCATGTTCT 59.015 36.000 0.00 0.00 34.75 3.01
6342 8800 1.959085 CAGAAAACATGGCAGCGGT 59.041 52.632 0.00 0.00 0.00 5.68
6366 8824 1.819928 TGCGAAGGTGCACAATACAT 58.180 45.000 20.43 0.00 40.62 2.29
6367 8825 3.314083 TGCGAAGGTGCACAATACA 57.686 47.368 20.43 6.94 40.62 2.29
6569 9027 0.733729 CTTTCTGCTGCTGCTCCATC 59.266 55.000 17.00 0.00 40.48 3.51
6908 9367 2.250939 CGCGAAAACAGGGCAGTCA 61.251 57.895 0.00 0.00 0.00 3.41
6950 9409 5.473162 CACCTACAACCAATCAACATCTTGA 59.527 40.000 0.00 0.00 40.77 3.02
7005 9465 0.685785 CCAGCCTCCTCTGCTCTACA 60.686 60.000 0.00 0.00 36.81 2.74
7025 9485 4.063689 CAGCCCTAGTTCATGCTCATTAG 58.936 47.826 0.00 0.00 30.08 1.73
7026 9486 3.455910 ACAGCCCTAGTTCATGCTCATTA 59.544 43.478 0.00 0.00 30.08 1.90
7028 9488 1.842562 ACAGCCCTAGTTCATGCTCAT 59.157 47.619 0.00 0.00 30.08 2.90
7031 9491 2.472029 ACTACAGCCCTAGTTCATGCT 58.528 47.619 0.00 0.00 33.52 3.79
7064 9524 3.611113 CGAGTACGTACATTCTTGTTGGG 59.389 47.826 26.55 0.00 37.28 4.12
7073 9533 1.135721 GGCCCTTCGAGTACGTACATT 59.864 52.381 26.55 7.86 40.69 2.71
7087 9554 1.285078 GGTGAACCTAGAATGGCCCTT 59.715 52.381 0.00 0.00 0.00 3.95
7140 9615 5.747565 TCTTTGTACACGCTTCATTTCTTG 58.252 37.500 0.00 0.00 0.00 3.02
7153 9628 9.827411 GGAGTCAAATAAATCTTCTTTGTACAC 57.173 33.333 0.00 0.00 32.89 2.90
7173 9648 1.279496 CCTCCTTGTCATGGGAGTCA 58.721 55.000 16.40 0.00 45.46 3.41
7206 9681 6.046593 CACTCACCTTTCTTGTTGTACAGTA 58.953 40.000 0.00 0.00 0.00 2.74
7207 9682 4.876107 CACTCACCTTTCTTGTTGTACAGT 59.124 41.667 0.00 0.00 0.00 3.55
7208 9683 4.260784 GCACTCACCTTTCTTGTTGTACAG 60.261 45.833 0.00 0.00 0.00 2.74
7209 9684 3.625764 GCACTCACCTTTCTTGTTGTACA 59.374 43.478 0.00 0.00 0.00 2.90
7210 9685 3.625764 TGCACTCACCTTTCTTGTTGTAC 59.374 43.478 0.00 0.00 0.00 2.90
7228 9703 6.261603 TGAATTATGATCATCCAAGAGTGCAC 59.738 38.462 12.53 9.40 0.00 4.57
7264 9760 6.929606 ACAAGGCTTAGATCGTACATAATTCC 59.070 38.462 0.00 0.00 0.00 3.01
7272 9768 4.106029 TCACACAAGGCTTAGATCGTAC 57.894 45.455 0.00 0.00 0.00 3.67
7275 9771 4.926238 GGATATCACACAAGGCTTAGATCG 59.074 45.833 0.00 0.00 0.00 3.69
7276 9772 5.858381 TGGATATCACACAAGGCTTAGATC 58.142 41.667 0.00 0.00 0.00 2.75
7277 9773 5.894298 TGGATATCACACAAGGCTTAGAT 57.106 39.130 0.00 4.32 0.00 1.98
7278 9774 5.366477 TCATGGATATCACACAAGGCTTAGA 59.634 40.000 0.00 0.00 0.00 2.10
7284 9821 8.859236 ATAATTCTCATGGATATCACACAAGG 57.141 34.615 4.83 0.00 0.00 3.61
7322 9859 6.625740 GCACATGAGCACACAATATTTAGGTT 60.626 38.462 10.48 0.00 0.00 3.50
7325 9862 4.965762 CGCACATGAGCACACAATATTTAG 59.034 41.667 15.56 0.00 0.00 1.85
7343 9880 0.528017 TTTGCCTTTGACAACGCACA 59.472 45.000 8.32 0.89 0.00 4.57
7349 9886 6.205464 TGAAAATTGTTGTTTGCCTTTGACAA 59.795 30.769 0.00 0.00 0.00 3.18
7391 9928 6.455360 TTGTTTCTTCATGAGCTGAAAGTT 57.545 33.333 15.89 0.00 43.20 2.66
7392 9929 6.455360 TTTGTTTCTTCATGAGCTGAAAGT 57.545 33.333 15.89 0.00 43.20 2.66
7393 9930 7.437267 ACAATTTGTTTCTTCATGAGCTGAAAG 59.563 33.333 15.89 3.00 43.20 2.62
7440 9977 7.449395 TCCATCAGAGATGAAACATGTTCTTTT 59.551 33.333 12.39 0.00 0.00 2.27
7441 9978 6.944290 TCCATCAGAGATGAAACATGTTCTTT 59.056 34.615 12.39 0.00 0.00 2.52
7442 9979 6.479006 TCCATCAGAGATGAAACATGTTCTT 58.521 36.000 12.39 0.00 0.00 2.52
7443 9980 6.058553 TCCATCAGAGATGAAACATGTTCT 57.941 37.500 12.39 4.31 0.00 3.01
7444 9981 6.748333 TTCCATCAGAGATGAAACATGTTC 57.252 37.500 12.39 6.33 0.00 3.18
7445 9982 7.014518 TGTTTTCCATCAGAGATGAAACATGTT 59.985 33.333 16.48 4.92 32.51 2.71
7446 9983 6.491062 TGTTTTCCATCAGAGATGAAACATGT 59.509 34.615 16.48 0.00 32.51 3.21
7447 9984 6.916440 TGTTTTCCATCAGAGATGAAACATG 58.084 36.000 16.48 0.00 32.51 3.21
7448 9985 7.177921 ACATGTTTTCCATCAGAGATGAAACAT 59.822 33.333 21.57 21.57 43.18 2.71
7449 9986 6.491062 ACATGTTTTCCATCAGAGATGAAACA 59.509 34.615 19.94 19.94 39.09 2.83
7450 9987 6.917533 ACATGTTTTCCATCAGAGATGAAAC 58.082 36.000 8.49 11.37 0.00 2.78
7451 9988 6.944290 AGACATGTTTTCCATCAGAGATGAAA 59.056 34.615 0.00 5.00 0.00 2.69
7452 9989 6.479006 AGACATGTTTTCCATCAGAGATGAA 58.521 36.000 0.00 0.00 0.00 2.57
7453 9990 6.058553 AGACATGTTTTCCATCAGAGATGA 57.941 37.500 0.00 0.00 0.00 2.92
7454 9991 6.754702 AAGACATGTTTTCCATCAGAGATG 57.245 37.500 0.00 0.07 0.00 2.90
7455 9992 6.152323 CCAAAGACATGTTTTCCATCAGAGAT 59.848 38.462 0.00 0.00 0.00 2.75
7456 9993 5.474532 CCAAAGACATGTTTTCCATCAGAGA 59.525 40.000 0.00 0.00 0.00 3.10
7457 9994 5.242393 ACCAAAGACATGTTTTCCATCAGAG 59.758 40.000 0.00 0.00 0.00 3.35
7458 9995 5.009911 CACCAAAGACATGTTTTCCATCAGA 59.990 40.000 0.00 0.00 0.00 3.27
7459 9996 5.009911 TCACCAAAGACATGTTTTCCATCAG 59.990 40.000 0.00 0.00 0.00 2.90
7460 9997 4.892345 TCACCAAAGACATGTTTTCCATCA 59.108 37.500 0.00 0.00 0.00 3.07
7461 9998 5.452078 TCACCAAAGACATGTTTTCCATC 57.548 39.130 0.00 0.00 0.00 3.51
7462 9999 7.451255 TCTTATCACCAAAGACATGTTTTCCAT 59.549 33.333 0.00 0.00 0.00 3.41
7463 10000 6.775142 TCTTATCACCAAAGACATGTTTTCCA 59.225 34.615 0.00 0.00 0.00 3.53
7464 10001 7.214467 TCTTATCACCAAAGACATGTTTTCC 57.786 36.000 0.00 0.00 0.00 3.13
7483 10020 4.595781 TGAGGTGTAACTGGTTGGTCTTAT 59.404 41.667 0.00 0.00 36.74 1.73
7505 10042 5.645067 TGAGATGACTTGCTATTCTTTGGTG 59.355 40.000 0.00 0.00 0.00 4.17
7508 10045 5.220815 GGCTGAGATGACTTGCTATTCTTTG 60.221 44.000 0.00 0.00 0.00 2.77
7519 10056 2.328819 GCTGATGGCTGAGATGACTT 57.671 50.000 0.00 0.00 38.06 3.01
7590 10127 9.883142 TGATGGATGCACATATATTTATTCGTA 57.117 29.630 0.00 0.00 0.00 3.43
7591 10128 8.668353 GTGATGGATGCACATATATTTATTCGT 58.332 33.333 0.00 0.00 36.31 3.85
7592 10129 7.847564 CGTGATGGATGCACATATATTTATTCG 59.152 37.037 0.00 0.00 36.06 3.34
7593 10130 8.668353 ACGTGATGGATGCACATATATTTATTC 58.332 33.333 0.00 0.00 36.06 1.75
7594 10131 8.565896 ACGTGATGGATGCACATATATTTATT 57.434 30.769 0.00 0.00 36.06 1.40
7595 10132 9.836864 ATACGTGATGGATGCACATATATTTAT 57.163 29.630 0.00 0.00 36.06 1.40
7596 10133 9.097257 CATACGTGATGGATGCACATATATTTA 57.903 33.333 0.00 0.00 36.06 1.40
7597 10134 7.977904 CATACGTGATGGATGCACATATATTT 58.022 34.615 0.00 0.00 36.06 1.40
7598 10135 7.543947 CATACGTGATGGATGCACATATATT 57.456 36.000 0.00 0.00 36.06 1.28
7612 10149 3.370978 GTCAGTGGTTTCCATACGTGATG 59.629 47.826 0.00 0.00 35.28 3.07
7613 10150 3.596214 GTCAGTGGTTTCCATACGTGAT 58.404 45.455 0.00 0.00 35.28 3.06
7614 10151 2.608506 CGTCAGTGGTTTCCATACGTGA 60.609 50.000 0.00 0.00 35.28 4.35
7615 10152 1.724623 CGTCAGTGGTTTCCATACGTG 59.275 52.381 0.00 0.00 35.28 4.49
7616 10153 1.938016 GCGTCAGTGGTTTCCATACGT 60.938 52.381 16.30 0.00 38.40 3.57
7617 10154 0.719465 GCGTCAGTGGTTTCCATACG 59.281 55.000 13.07 13.07 38.81 3.06
7618 10155 0.719465 CGCGTCAGTGGTTTCCATAC 59.281 55.000 0.00 0.00 35.28 2.39
7619 10156 0.604073 TCGCGTCAGTGGTTTCCATA 59.396 50.000 5.77 0.00 35.28 2.74
7620 10157 0.250124 TTCGCGTCAGTGGTTTCCAT 60.250 50.000 5.77 0.00 35.28 3.41
7621 10158 0.250124 ATTCGCGTCAGTGGTTTCCA 60.250 50.000 5.77 0.00 0.00 3.53
7622 10159 0.872388 AATTCGCGTCAGTGGTTTCC 59.128 50.000 5.77 0.00 0.00 3.13
7623 10160 2.681152 AAATTCGCGTCAGTGGTTTC 57.319 45.000 5.77 0.00 0.00 2.78
7624 10161 3.112580 CAAAAATTCGCGTCAGTGGTTT 58.887 40.909 5.77 0.00 0.00 3.27
7625 10162 2.542824 CCAAAAATTCGCGTCAGTGGTT 60.543 45.455 5.77 0.00 0.00 3.67
7626 10163 1.001815 CCAAAAATTCGCGTCAGTGGT 60.002 47.619 5.77 0.00 0.00 4.16
7627 10164 1.685302 CCAAAAATTCGCGTCAGTGG 58.315 50.000 5.77 3.94 0.00 4.00
7628 10165 1.052287 GCCAAAAATTCGCGTCAGTG 58.948 50.000 5.77 0.00 0.00 3.66
7629 10166 0.951558 AGCCAAAAATTCGCGTCAGT 59.048 45.000 5.77 0.00 0.00 3.41
7630 10167 1.606606 GAGCCAAAAATTCGCGTCAG 58.393 50.000 5.77 0.00 0.00 3.51
7631 10168 0.239879 GGAGCCAAAAATTCGCGTCA 59.760 50.000 5.77 0.00 0.00 4.35
7632 10169 0.521735 AGGAGCCAAAAATTCGCGTC 59.478 50.000 5.77 0.00 0.00 5.19
7633 10170 0.240945 CAGGAGCCAAAAATTCGCGT 59.759 50.000 5.77 0.00 0.00 6.01
7634 10171 0.456653 CCAGGAGCCAAAAATTCGCG 60.457 55.000 0.00 0.00 0.00 5.87
7635 10172 0.108662 CCCAGGAGCCAAAAATTCGC 60.109 55.000 0.00 0.00 0.00 4.70
7636 10173 1.067635 CACCCAGGAGCCAAAAATTCG 60.068 52.381 0.00 0.00 0.00 3.34
7637 10174 1.338105 GCACCCAGGAGCCAAAAATTC 60.338 52.381 0.00 0.00 0.00 2.17
7638 10175 0.686789 GCACCCAGGAGCCAAAAATT 59.313 50.000 0.00 0.00 0.00 1.82
7639 10176 0.178924 AGCACCCAGGAGCCAAAAAT 60.179 50.000 2.22 0.00 32.18 1.82
7640 10177 0.827507 GAGCACCCAGGAGCCAAAAA 60.828 55.000 2.22 0.00 32.18 1.94
7641 10178 1.228552 GAGCACCCAGGAGCCAAAA 60.229 57.895 2.22 0.00 32.18 2.44
7642 10179 2.436109 GAGCACCCAGGAGCCAAA 59.564 61.111 2.22 0.00 32.18 3.28
7643 10180 3.650950 GGAGCACCCAGGAGCCAA 61.651 66.667 2.22 0.00 32.18 4.52
7646 10183 4.459089 GTCGGAGCACCCAGGAGC 62.459 72.222 0.00 0.00 34.14 4.70
7647 10184 3.775654 GGTCGGAGCACCCAGGAG 61.776 72.222 1.64 0.00 34.14 3.69
7648 10185 4.316823 AGGTCGGAGCACCCAGGA 62.317 66.667 10.15 0.00 37.09 3.86
7649 10186 3.775654 GAGGTCGGAGCACCCAGG 61.776 72.222 10.15 0.00 37.09 4.45
7650 10187 2.856039 TAGGAGGTCGGAGCACCCAG 62.856 65.000 18.10 0.00 37.09 4.45
7651 10188 2.238319 ATAGGAGGTCGGAGCACCCA 62.238 60.000 18.10 7.11 37.09 4.51
7652 10189 0.178970 TATAGGAGGTCGGAGCACCC 60.179 60.000 18.10 13.67 37.09 4.61
7653 10190 1.700955 TTATAGGAGGTCGGAGCACC 58.299 55.000 14.69 14.69 36.58 5.01
7654 10191 2.429610 TGTTTATAGGAGGTCGGAGCAC 59.570 50.000 10.15 2.81 0.00 4.40
7655 10192 2.742348 TGTTTATAGGAGGTCGGAGCA 58.258 47.619 10.15 0.00 0.00 4.26
7656 10193 4.338379 AATGTTTATAGGAGGTCGGAGC 57.662 45.455 0.00 0.00 0.00 4.70
7657 10194 8.904099 ATTTTAATGTTTATAGGAGGTCGGAG 57.096 34.615 0.00 0.00 0.00 4.63
7713 10250 9.799106 CCCAGATTTGGTATACTAAAATCAGAT 57.201 33.333 27.59 15.73 43.40 2.90
7714 10251 8.778059 ACCCAGATTTGGTATACTAAAATCAGA 58.222 33.333 27.59 8.48 43.40 3.27
7715 10252 8.840321 CACCCAGATTTGGTATACTAAAATCAG 58.160 37.037 27.59 23.30 43.40 2.90
7716 10253 7.284489 GCACCCAGATTTGGTATACTAAAATCA 59.716 37.037 27.59 9.29 43.40 2.57
7717 10254 7.255486 GGCACCCAGATTTGGTATACTAAAATC 60.255 40.741 23.18 23.18 43.40 2.17
7718 10255 6.549736 GGCACCCAGATTTGGTATACTAAAAT 59.450 38.462 17.05 15.04 43.40 1.82
7719 10256 5.889289 GGCACCCAGATTTGGTATACTAAAA 59.111 40.000 17.05 11.43 43.40 1.52
7720 10257 5.442391 GGCACCCAGATTTGGTATACTAAA 58.558 41.667 15.69 15.69 43.40 1.85
7721 10258 5.043737 GGCACCCAGATTTGGTATACTAA 57.956 43.478 2.25 0.00 43.40 2.24
7722 10259 4.699925 GGCACCCAGATTTGGTATACTA 57.300 45.455 2.25 0.00 43.40 1.82
7723 10260 3.577805 GGCACCCAGATTTGGTATACT 57.422 47.619 2.25 0.00 43.40 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.