Multiple sequence alignment - TraesCS6D01G360300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G360300 chr6D 100.000 3706 0 0 1 3706 452083797 452080092 0.000000e+00 6844
1 TraesCS6D01G360300 chr6D 97.508 2087 44 6 1622 3706 462409647 462407567 0.000000e+00 3559
2 TraesCS6D01G360300 chr6D 78.313 1079 179 32 1036 2076 449844500 449843439 0.000000e+00 645
3 TraesCS6D01G360300 chr6D 90.506 474 41 2 14 483 48674764 48675237 1.130000e-174 623
4 TraesCS6D01G360300 chr6D 80.871 758 129 14 1330 2076 449818028 449817276 1.920000e-162 582
5 TraesCS6D01G360300 chr6D 78.891 649 96 22 2154 2781 450168065 450167437 5.770000e-108 401
6 TraesCS6D01G360300 chr6D 76.512 562 104 14 2156 2696 450211372 450210818 7.840000e-72 281
7 TraesCS6D01G360300 chr6A 94.370 3126 122 26 596 3706 609163835 609160749 0.000000e+00 4748
8 TraesCS6D01G360300 chr6A 86.420 567 49 10 14 553 65859173 65858608 2.460000e-166 595
9 TraesCS6D01G360300 chr6A 76.774 930 164 36 1036 1929 595489891 595488978 1.200000e-129 473
10 TraesCS6D01G360300 chr6A 79.487 624 91 21 2154 2758 595663709 595663104 3.450000e-110 409
11 TraesCS6D01G360300 chr6B 93.111 3150 153 28 589 3706 704862496 704859379 0.000000e+00 4556
12 TraesCS6D01G360300 chr6B 78.293 1078 181 30 1036 2076 682417949 682419010 0.000000e+00 645
13 TraesCS6D01G360300 chr6B 79.808 624 110 13 1304 1916 681930434 681929816 1.220000e-119 440
14 TraesCS6D01G360300 chr6B 79.006 624 94 21 2154 2758 682660970 682660365 3.470000e-105 392
15 TraesCS6D01G360300 chr6B 77.601 567 99 14 2152 2696 682707669 682707109 5.970000e-83 318
16 TraesCS6D01G360300 chr6B 86.561 253 27 6 1828 2076 681929812 681929563 4.720000e-69 272
17 TraesCS6D01G360300 chr6B 83.810 105 15 1 2243 2345 682741501 682741397 8.470000e-17 99
18 TraesCS6D01G360300 chr3B 87.831 567 37 14 19 554 254836782 254837347 1.450000e-178 636
19 TraesCS6D01G360300 chr2A 90.000 470 43 2 17 482 73547009 73547478 4.090000e-169 604
20 TraesCS6D01G360300 chr2A 88.936 470 46 4 18 482 654383501 654383969 3.210000e-160 575
21 TraesCS6D01G360300 chr5D 89.149 470 45 5 18 482 311608892 311609360 6.900000e-162 580
22 TraesCS6D01G360300 chr1D 89.126 469 46 4 19 483 223773918 223774385 2.480000e-161 579
23 TraesCS6D01G360300 chr1D 85.000 580 59 12 12 565 10600980 10600403 6.950000e-157 564
24 TraesCS6D01G360300 chr4B 88.632 475 48 4 15 485 657859931 657859459 1.150000e-159 573
25 TraesCS6D01G360300 chr4B 88.112 429 45 4 59 482 637276836 637276409 4.270000e-139 505
26 TraesCS6D01G360300 chr4A 88.632 475 47 6 13 481 45350504 45350977 4.150000e-159 571
27 TraesCS6D01G360300 chr1A 88.235 476 52 2 12 483 287381805 287382280 1.930000e-157 566
28 TraesCS6D01G360300 chr1A 87.420 469 52 5 19 483 119343518 119343053 1.960000e-147 532
29 TraesCS6D01G360300 chr1A 86.200 471 60 3 19 485 416683588 416684057 4.270000e-139 505
30 TraesCS6D01G360300 chr3A 84.014 563 56 10 18 554 575352393 575352947 9.180000e-141 510
31 TraesCS6D01G360300 chr2D 83.126 563 67 9 18 554 624546853 624546293 4.300000e-134 488
32 TraesCS6D01G360300 chr4D 95.775 71 3 0 484 554 15433402 15433472 8.410000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G360300 chr6D 452080092 452083797 3705 True 6844 6844 100.0000 1 3706 1 chr6D.!!$R5 3705
1 TraesCS6D01G360300 chr6D 462407567 462409647 2080 True 3559 3559 97.5080 1622 3706 1 chr6D.!!$R6 2084
2 TraesCS6D01G360300 chr6D 449843439 449844500 1061 True 645 645 78.3130 1036 2076 1 chr6D.!!$R2 1040
3 TraesCS6D01G360300 chr6D 449817276 449818028 752 True 582 582 80.8710 1330 2076 1 chr6D.!!$R1 746
4 TraesCS6D01G360300 chr6D 450167437 450168065 628 True 401 401 78.8910 2154 2781 1 chr6D.!!$R3 627
5 TraesCS6D01G360300 chr6D 450210818 450211372 554 True 281 281 76.5120 2156 2696 1 chr6D.!!$R4 540
6 TraesCS6D01G360300 chr6A 609160749 609163835 3086 True 4748 4748 94.3700 596 3706 1 chr6A.!!$R4 3110
7 TraesCS6D01G360300 chr6A 65858608 65859173 565 True 595 595 86.4200 14 553 1 chr6A.!!$R1 539
8 TraesCS6D01G360300 chr6A 595488978 595489891 913 True 473 473 76.7740 1036 1929 1 chr6A.!!$R2 893
9 TraesCS6D01G360300 chr6A 595663104 595663709 605 True 409 409 79.4870 2154 2758 1 chr6A.!!$R3 604
10 TraesCS6D01G360300 chr6B 704859379 704862496 3117 True 4556 4556 93.1110 589 3706 1 chr6B.!!$R4 3117
11 TraesCS6D01G360300 chr6B 682417949 682419010 1061 False 645 645 78.2930 1036 2076 1 chr6B.!!$F1 1040
12 TraesCS6D01G360300 chr6B 682660365 682660970 605 True 392 392 79.0060 2154 2758 1 chr6B.!!$R1 604
13 TraesCS6D01G360300 chr6B 681929563 681930434 871 True 356 440 83.1845 1304 2076 2 chr6B.!!$R5 772
14 TraesCS6D01G360300 chr6B 682707109 682707669 560 True 318 318 77.6010 2152 2696 1 chr6B.!!$R2 544
15 TraesCS6D01G360300 chr3B 254836782 254837347 565 False 636 636 87.8310 19 554 1 chr3B.!!$F1 535
16 TraesCS6D01G360300 chr1D 10600403 10600980 577 True 564 564 85.0000 12 565 1 chr1D.!!$R1 553
17 TraesCS6D01G360300 chr3A 575352393 575352947 554 False 510 510 84.0140 18 554 1 chr3A.!!$F1 536
18 TraesCS6D01G360300 chr2D 624546293 624546853 560 True 488 488 83.1260 18 554 1 chr2D.!!$R1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.034186 ATGCCATTGGACACCATCGT 60.034 50.0 6.95 0.0 31.53 3.73 F
202 203 0.034756 TGGACACCATCGTTGTCAGG 59.965 55.0 4.96 0.0 34.52 3.86 F
203 204 0.034896 GGACACCATCGTTGTCAGGT 59.965 55.0 4.96 0.0 34.52 4.00 F
1539 1567 0.035317 TCCTTGCGAGCATCTTGTGT 59.965 50.0 0.00 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 1438 1.444553 CTTCAGGTGCGACGAGACC 60.445 63.158 0.0 3.42 0.00 3.85 R
1548 1576 2.614057 CCCTTTGATGGTAAGATGTCGC 59.386 50.000 0.0 0.00 0.00 5.19 R
1944 2080 3.219052 TGTGAAACGGTGAAAACAACC 57.781 42.857 0.0 0.00 42.39 3.77 R
3262 3765 0.826715 GCAGTAGACAGATGCAGGGA 59.173 55.000 0.0 0.00 39.75 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.752228 AAAAAGGGTTTTTATCATTTATGCCAT 57.248 25.926 0.00 0.00 40.80 4.40
40 41 9.752228 AAAAGGGTTTTTATCATTTATGCCATT 57.248 25.926 0.00 0.00 34.81 3.16
43 44 9.212593 AGGGTTTTTATCATTTATGCCATTAGT 57.787 29.630 0.00 0.00 0.00 2.24
44 45 9.830975 GGGTTTTTATCATTTATGCCATTAGTT 57.169 29.630 0.00 0.00 0.00 2.24
51 52 7.759489 TCATTTATGCCATTAGTTATGTCCC 57.241 36.000 0.00 0.00 31.99 4.46
52 53 7.293828 TCATTTATGCCATTAGTTATGTCCCA 58.706 34.615 0.00 0.00 31.99 4.37
53 54 6.952773 TTTATGCCATTAGTTATGTCCCAC 57.047 37.500 0.00 0.00 31.99 4.61
54 55 4.796110 ATGCCATTAGTTATGTCCCACT 57.204 40.909 0.00 0.00 31.99 4.00
55 56 5.904984 ATGCCATTAGTTATGTCCCACTA 57.095 39.130 0.00 0.00 31.99 2.74
56 57 5.031066 TGCCATTAGTTATGTCCCACTAC 57.969 43.478 0.00 0.00 31.99 2.73
57 58 4.719773 TGCCATTAGTTATGTCCCACTACT 59.280 41.667 0.00 0.00 31.99 2.57
58 59 5.163343 TGCCATTAGTTATGTCCCACTACTC 60.163 44.000 0.00 0.00 31.99 2.59
59 60 5.163343 GCCATTAGTTATGTCCCACTACTCA 60.163 44.000 0.00 0.00 31.99 3.41
60 61 6.516718 CCATTAGTTATGTCCCACTACTCAG 58.483 44.000 0.00 0.00 31.99 3.35
61 62 6.098409 CCATTAGTTATGTCCCACTACTCAGT 59.902 42.308 0.00 0.00 31.35 3.41
62 63 7.364762 CCATTAGTTATGTCCCACTACTCAGTT 60.365 40.741 0.00 0.00 29.71 3.16
63 64 7.549147 TTAGTTATGTCCCACTACTCAGTTT 57.451 36.000 0.00 0.00 30.46 2.66
64 65 6.435292 AGTTATGTCCCACTACTCAGTTTT 57.565 37.500 0.00 0.00 30.46 2.43
65 66 6.231211 AGTTATGTCCCACTACTCAGTTTTG 58.769 40.000 0.00 0.00 30.46 2.44
66 67 2.846193 TGTCCCACTACTCAGTTTTGC 58.154 47.619 0.00 0.00 30.46 3.68
67 68 2.152016 GTCCCACTACTCAGTTTTGCC 58.848 52.381 0.00 0.00 30.46 4.52
68 69 1.771854 TCCCACTACTCAGTTTTGCCA 59.228 47.619 0.00 0.00 30.46 4.92
69 70 1.880027 CCCACTACTCAGTTTTGCCAC 59.120 52.381 0.00 0.00 30.46 5.01
70 71 2.487265 CCCACTACTCAGTTTTGCCACT 60.487 50.000 0.00 0.00 30.46 4.00
71 72 3.244422 CCCACTACTCAGTTTTGCCACTA 60.244 47.826 0.00 0.00 30.46 2.74
72 73 3.997021 CCACTACTCAGTTTTGCCACTAG 59.003 47.826 0.00 0.00 30.46 2.57
73 74 4.262463 CCACTACTCAGTTTTGCCACTAGA 60.262 45.833 0.00 0.00 30.46 2.43
74 75 5.482908 CACTACTCAGTTTTGCCACTAGAT 58.517 41.667 0.00 0.00 30.46 1.98
75 76 5.349817 CACTACTCAGTTTTGCCACTAGATG 59.650 44.000 0.00 0.00 30.46 2.90
76 77 4.357918 ACTCAGTTTTGCCACTAGATGT 57.642 40.909 0.00 0.00 0.00 3.06
77 78 4.718961 ACTCAGTTTTGCCACTAGATGTT 58.281 39.130 0.00 0.00 0.00 2.71
78 79 5.865085 ACTCAGTTTTGCCACTAGATGTTA 58.135 37.500 0.00 0.00 0.00 2.41
79 80 5.701290 ACTCAGTTTTGCCACTAGATGTTAC 59.299 40.000 0.00 0.00 0.00 2.50
80 81 5.616270 TCAGTTTTGCCACTAGATGTTACA 58.384 37.500 0.00 0.00 0.00 2.41
81 82 6.058833 TCAGTTTTGCCACTAGATGTTACAA 58.941 36.000 0.00 0.00 0.00 2.41
82 83 6.017440 TCAGTTTTGCCACTAGATGTTACAAC 60.017 38.462 0.00 0.00 0.00 3.32
83 84 6.017109 CAGTTTTGCCACTAGATGTTACAACT 60.017 38.462 0.00 0.08 0.00 3.16
84 85 5.940192 TTTGCCACTAGATGTTACAACTG 57.060 39.130 5.38 0.00 0.00 3.16
85 86 3.334691 TGCCACTAGATGTTACAACTGC 58.665 45.455 5.38 1.09 0.00 4.40
86 87 3.007940 TGCCACTAGATGTTACAACTGCT 59.992 43.478 5.38 0.00 0.00 4.24
87 88 4.221924 TGCCACTAGATGTTACAACTGCTA 59.778 41.667 5.38 0.00 0.00 3.49
88 89 5.175859 GCCACTAGATGTTACAACTGCTAA 58.824 41.667 5.38 0.00 0.00 3.09
89 90 5.642063 GCCACTAGATGTTACAACTGCTAAA 59.358 40.000 5.38 0.00 0.00 1.85
90 91 6.148811 GCCACTAGATGTTACAACTGCTAAAA 59.851 38.462 5.38 0.00 0.00 1.52
91 92 7.308348 GCCACTAGATGTTACAACTGCTAAAAA 60.308 37.037 5.38 0.00 0.00 1.94
108 109 3.634568 AAAAATGCCATCGTTTCGTGA 57.365 38.095 0.00 0.00 31.42 4.35
109 110 2.900122 AAATGCCATCGTTTCGTGAG 57.100 45.000 0.00 0.00 0.00 3.51
110 111 2.093306 AATGCCATCGTTTCGTGAGA 57.907 45.000 0.00 0.00 39.20 3.27
111 112 2.315925 ATGCCATCGTTTCGTGAGAT 57.684 45.000 0.00 0.00 41.60 2.75
112 113 1.358877 TGCCATCGTTTCGTGAGATG 58.641 50.000 0.00 0.00 41.60 2.90
116 117 3.374389 CATCGTTTCGTGAGATGGTTG 57.626 47.619 0.00 0.00 41.60 3.77
117 118 1.144969 TCGTTTCGTGAGATGGTTGC 58.855 50.000 0.00 0.00 41.60 4.17
118 119 1.148310 CGTTTCGTGAGATGGTTGCT 58.852 50.000 0.00 0.00 41.60 3.91
119 120 1.126846 CGTTTCGTGAGATGGTTGCTC 59.873 52.381 0.00 0.00 41.60 4.26
120 121 2.143122 GTTTCGTGAGATGGTTGCTCA 58.857 47.619 0.00 0.00 41.60 4.26
121 122 2.542020 TTCGTGAGATGGTTGCTCAA 57.458 45.000 0.00 0.00 43.39 3.02
122 123 2.542020 TCGTGAGATGGTTGCTCAAA 57.458 45.000 0.00 0.00 43.39 2.69
123 124 2.844946 TCGTGAGATGGTTGCTCAAAA 58.155 42.857 0.00 0.00 43.39 2.44
124 125 3.210227 TCGTGAGATGGTTGCTCAAAAA 58.790 40.909 0.00 0.00 43.39 1.94
125 126 3.820467 TCGTGAGATGGTTGCTCAAAAAT 59.180 39.130 0.00 0.00 43.39 1.82
126 127 3.916172 CGTGAGATGGTTGCTCAAAAATG 59.084 43.478 0.00 0.00 43.39 2.32
127 128 3.676646 GTGAGATGGTTGCTCAAAAATGC 59.323 43.478 0.00 0.00 43.39 3.56
128 129 3.321396 TGAGATGGTTGCTCAAAAATGCA 59.679 39.130 0.00 0.00 39.29 3.96
129 130 4.202233 TGAGATGGTTGCTCAAAAATGCAA 60.202 37.500 0.00 0.00 45.40 4.08
157 158 8.450578 AGATATCTTAAAAATGCATCGTTCCA 57.549 30.769 0.00 0.00 0.00 3.53
158 159 9.071276 AGATATCTTAAAAATGCATCGTTCCAT 57.929 29.630 0.00 0.00 0.00 3.41
159 160 9.683069 GATATCTTAAAAATGCATCGTTCCATT 57.317 29.630 0.00 0.00 33.35 3.16
162 163 7.479980 TCTTAAAAATGCATCGTTCCATTAGG 58.520 34.615 0.00 0.00 31.82 2.69
163 164 5.659440 AAAAATGCATCGTTCCATTAGGT 57.341 34.783 0.00 0.00 35.89 3.08
164 165 4.637483 AAATGCATCGTTCCATTAGGTG 57.363 40.909 0.00 0.00 35.89 4.00
165 166 2.779755 TGCATCGTTCCATTAGGTGT 57.220 45.000 0.00 0.00 35.89 4.16
166 167 3.066291 TGCATCGTTCCATTAGGTGTT 57.934 42.857 0.00 0.00 35.89 3.32
167 168 3.417101 TGCATCGTTCCATTAGGTGTTT 58.583 40.909 0.00 0.00 35.89 2.83
168 169 3.190327 TGCATCGTTCCATTAGGTGTTTG 59.810 43.478 0.00 0.00 35.89 2.93
169 170 3.758300 CATCGTTCCATTAGGTGTTTGC 58.242 45.455 0.00 0.00 35.89 3.68
170 171 3.134574 TCGTTCCATTAGGTGTTTGCT 57.865 42.857 0.00 0.00 35.89 3.91
171 172 3.071479 TCGTTCCATTAGGTGTTTGCTC 58.929 45.455 0.00 0.00 35.89 4.26
172 173 2.811431 CGTTCCATTAGGTGTTTGCTCA 59.189 45.455 0.00 0.00 35.89 4.26
173 174 3.252215 CGTTCCATTAGGTGTTTGCTCAA 59.748 43.478 0.00 0.00 35.89 3.02
174 175 4.261405 CGTTCCATTAGGTGTTTGCTCAAA 60.261 41.667 0.00 0.00 35.89 2.69
175 176 5.596845 GTTCCATTAGGTGTTTGCTCAAAA 58.403 37.500 0.00 0.00 35.89 2.44
176 177 5.860941 TCCATTAGGTGTTTGCTCAAAAA 57.139 34.783 0.00 0.00 35.89 1.94
177 178 6.418057 TCCATTAGGTGTTTGCTCAAAAAT 57.582 33.333 0.00 0.00 35.89 1.82
178 179 6.222389 TCCATTAGGTGTTTGCTCAAAAATG 58.778 36.000 0.00 3.85 35.89 2.32
179 180 5.106987 CCATTAGGTGTTTGCTCAAAAATGC 60.107 40.000 9.49 0.00 29.18 3.56
180 181 2.837498 AGGTGTTTGCTCAAAAATGCC 58.163 42.857 0.00 0.00 31.33 4.40
181 182 2.170187 AGGTGTTTGCTCAAAAATGCCA 59.830 40.909 0.00 0.00 31.33 4.92
182 183 3.140623 GGTGTTTGCTCAAAAATGCCAT 58.859 40.909 0.00 0.00 31.33 4.40
183 184 3.565063 GGTGTTTGCTCAAAAATGCCATT 59.435 39.130 0.00 0.00 31.33 3.16
184 185 4.529446 GTGTTTGCTCAAAAATGCCATTG 58.471 39.130 0.00 0.00 31.33 2.82
185 186 3.564644 TGTTTGCTCAAAAATGCCATTGG 59.435 39.130 0.00 0.00 31.33 3.16
186 187 3.766068 TTGCTCAAAAATGCCATTGGA 57.234 38.095 6.95 0.00 0.00 3.53
187 188 3.042871 TGCTCAAAAATGCCATTGGAC 57.957 42.857 6.95 0.00 0.00 4.02
188 189 2.367894 TGCTCAAAAATGCCATTGGACA 59.632 40.909 6.95 4.54 0.00 4.02
189 190 2.738314 GCTCAAAAATGCCATTGGACAC 59.262 45.455 6.95 0.00 0.00 3.67
190 191 3.328505 CTCAAAAATGCCATTGGACACC 58.671 45.455 6.95 0.00 0.00 4.16
191 192 2.702478 TCAAAAATGCCATTGGACACCA 59.298 40.909 6.95 0.00 0.00 4.17
192 193 3.327172 TCAAAAATGCCATTGGACACCAT 59.673 39.130 6.95 0.00 31.53 3.55
193 194 3.615224 AAAATGCCATTGGACACCATC 57.385 42.857 6.95 0.00 31.53 3.51
194 195 1.105457 AATGCCATTGGACACCATCG 58.895 50.000 6.95 0.00 31.53 3.84
195 196 0.034186 ATGCCATTGGACACCATCGT 60.034 50.000 6.95 0.00 31.53 3.73
196 197 0.251121 TGCCATTGGACACCATCGTT 60.251 50.000 6.95 0.00 31.53 3.85
197 198 0.171007 GCCATTGGACACCATCGTTG 59.829 55.000 6.95 0.00 31.53 4.10
198 199 1.533625 CCATTGGACACCATCGTTGT 58.466 50.000 0.00 0.00 31.53 3.32
199 200 1.468520 CCATTGGACACCATCGTTGTC 59.531 52.381 0.00 0.00 31.53 3.18
200 201 2.150390 CATTGGACACCATCGTTGTCA 58.850 47.619 4.96 0.00 34.52 3.58
201 202 1.877637 TTGGACACCATCGTTGTCAG 58.122 50.000 4.96 0.00 34.52 3.51
202 203 0.034756 TGGACACCATCGTTGTCAGG 59.965 55.000 4.96 0.00 34.52 3.86
203 204 0.034896 GGACACCATCGTTGTCAGGT 59.965 55.000 4.96 0.00 34.52 4.00
204 205 1.429463 GACACCATCGTTGTCAGGTC 58.571 55.000 0.00 0.00 33.20 3.85
205 206 0.756294 ACACCATCGTTGTCAGGTCA 59.244 50.000 0.00 0.00 30.44 4.02
206 207 1.140052 ACACCATCGTTGTCAGGTCAA 59.860 47.619 0.00 0.00 30.44 3.18
207 208 2.217750 CACCATCGTTGTCAGGTCAAA 58.782 47.619 0.00 0.00 30.44 2.69
208 209 2.032030 CACCATCGTTGTCAGGTCAAAC 60.032 50.000 0.00 0.00 30.44 2.93
209 210 2.158813 ACCATCGTTGTCAGGTCAAACT 60.159 45.455 0.00 0.00 0.00 2.66
210 211 2.480419 CCATCGTTGTCAGGTCAAACTC 59.520 50.000 0.00 0.00 0.00 3.01
211 212 1.847818 TCGTTGTCAGGTCAAACTCG 58.152 50.000 0.00 0.00 0.00 4.18
212 213 1.135527 TCGTTGTCAGGTCAAACTCGT 59.864 47.619 0.00 0.00 0.00 4.18
213 214 1.931172 CGTTGTCAGGTCAAACTCGTT 59.069 47.619 0.00 0.00 0.00 3.85
214 215 2.285602 CGTTGTCAGGTCAAACTCGTTG 60.286 50.000 0.00 0.00 38.71 4.10
215 216 2.933906 GTTGTCAGGTCAAACTCGTTGA 59.066 45.455 0.00 0.00 44.20 3.18
227 228 7.302350 TCAAACTCGTTGACCATGTTATATG 57.698 36.000 0.00 0.00 41.47 1.78
228 229 6.315144 TCAAACTCGTTGACCATGTTATATGG 59.685 38.462 6.44 6.44 41.47 2.74
229 230 4.127171 ACTCGTTGACCATGTTATATGGC 58.873 43.478 7.93 2.24 42.82 4.40
230 231 3.127589 TCGTTGACCATGTTATATGGCG 58.872 45.455 7.93 3.96 42.82 5.69
231 232 3.127589 CGTTGACCATGTTATATGGCGA 58.872 45.455 7.93 0.00 42.82 5.54
232 233 3.558006 CGTTGACCATGTTATATGGCGAA 59.442 43.478 7.93 0.00 42.82 4.70
233 234 4.034626 CGTTGACCATGTTATATGGCGAAA 59.965 41.667 7.93 0.00 42.82 3.46
234 235 5.447954 CGTTGACCATGTTATATGGCGAAAA 60.448 40.000 7.93 0.00 42.82 2.29
235 236 6.503524 GTTGACCATGTTATATGGCGAAAAT 58.496 36.000 7.93 0.00 42.82 1.82
236 237 7.519168 CGTTGACCATGTTATATGGCGAAAATA 60.519 37.037 7.93 0.00 42.82 1.40
237 238 7.197071 TGACCATGTTATATGGCGAAAATAC 57.803 36.000 7.93 0.00 42.82 1.89
238 239 6.205853 TGACCATGTTATATGGCGAAAATACC 59.794 38.462 7.93 0.00 42.82 2.73
239 240 5.475564 ACCATGTTATATGGCGAAAATACCC 59.524 40.000 7.93 0.00 42.82 3.69
240 241 5.105917 CCATGTTATATGGCGAAAATACCCC 60.106 44.000 0.00 0.00 31.75 4.95
241 242 5.313280 TGTTATATGGCGAAAATACCCCT 57.687 39.130 0.00 0.00 0.00 4.79
242 243 5.067273 TGTTATATGGCGAAAATACCCCTG 58.933 41.667 0.00 0.00 0.00 4.45
243 244 3.876309 ATATGGCGAAAATACCCCTGT 57.124 42.857 0.00 0.00 0.00 4.00
244 245 4.986054 ATATGGCGAAAATACCCCTGTA 57.014 40.909 0.00 0.00 0.00 2.74
245 246 2.406596 TGGCGAAAATACCCCTGTAC 57.593 50.000 0.00 0.00 0.00 2.90
246 247 1.065272 TGGCGAAAATACCCCTGTACC 60.065 52.381 0.00 0.00 0.00 3.34
247 248 1.671979 GCGAAAATACCCCTGTACCC 58.328 55.000 0.00 0.00 0.00 3.69
248 249 1.065272 GCGAAAATACCCCTGTACCCA 60.065 52.381 0.00 0.00 0.00 4.51
249 250 2.618559 GCGAAAATACCCCTGTACCCAA 60.619 50.000 0.00 0.00 0.00 4.12
250 251 3.688235 CGAAAATACCCCTGTACCCAAA 58.312 45.455 0.00 0.00 0.00 3.28
251 252 4.274978 CGAAAATACCCCTGTACCCAAAT 58.725 43.478 0.00 0.00 0.00 2.32
252 253 4.097286 CGAAAATACCCCTGTACCCAAATG 59.903 45.833 0.00 0.00 0.00 2.32
253 254 4.685513 AAATACCCCTGTACCCAAATGT 57.314 40.909 0.00 0.00 0.00 2.71
254 255 3.945640 ATACCCCTGTACCCAAATGTC 57.054 47.619 0.00 0.00 0.00 3.06
255 256 1.451449 ACCCCTGTACCCAAATGTCA 58.549 50.000 0.00 0.00 0.00 3.58
256 257 1.354368 ACCCCTGTACCCAAATGTCAG 59.646 52.381 0.00 0.00 0.00 3.51
257 258 1.354368 CCCCTGTACCCAAATGTCAGT 59.646 52.381 0.00 0.00 0.00 3.41
258 259 2.225017 CCCCTGTACCCAAATGTCAGTT 60.225 50.000 0.00 0.00 0.00 3.16
259 260 3.081804 CCCTGTACCCAAATGTCAGTTC 58.918 50.000 0.00 0.00 0.00 3.01
260 261 3.244911 CCCTGTACCCAAATGTCAGTTCT 60.245 47.826 0.00 0.00 0.00 3.01
261 262 4.003648 CCTGTACCCAAATGTCAGTTCTC 58.996 47.826 0.00 0.00 0.00 2.87
262 263 4.263068 CCTGTACCCAAATGTCAGTTCTCT 60.263 45.833 0.00 0.00 0.00 3.10
263 264 4.641396 TGTACCCAAATGTCAGTTCTCTG 58.359 43.478 0.00 0.00 42.54 3.35
264 265 3.864789 ACCCAAATGTCAGTTCTCTGT 57.135 42.857 0.00 0.00 41.91 3.41
265 266 4.974645 ACCCAAATGTCAGTTCTCTGTA 57.025 40.909 0.00 0.00 41.91 2.74
266 267 5.505181 ACCCAAATGTCAGTTCTCTGTAT 57.495 39.130 0.00 0.00 41.91 2.29
267 268 5.491982 ACCCAAATGTCAGTTCTCTGTATC 58.508 41.667 0.00 0.00 41.91 2.24
268 269 5.249393 ACCCAAATGTCAGTTCTCTGTATCT 59.751 40.000 0.00 0.00 41.91 1.98
269 270 5.814705 CCCAAATGTCAGTTCTCTGTATCTC 59.185 44.000 0.00 0.00 41.91 2.75
270 271 6.401394 CCAAATGTCAGTTCTCTGTATCTCA 58.599 40.000 0.00 0.00 41.91 3.27
271 272 6.312426 CCAAATGTCAGTTCTCTGTATCTCAC 59.688 42.308 0.00 0.00 41.91 3.51
272 273 6.596309 AATGTCAGTTCTCTGTATCTCACA 57.404 37.500 0.00 0.00 41.91 3.58
273 274 6.596309 ATGTCAGTTCTCTGTATCTCACAA 57.404 37.500 0.00 0.00 41.91 3.33
274 275 6.596309 TGTCAGTTCTCTGTATCTCACAAT 57.404 37.500 0.00 0.00 41.91 2.71
275 276 6.393171 TGTCAGTTCTCTGTATCTCACAATG 58.607 40.000 0.00 0.00 41.91 2.82
276 277 6.209391 TGTCAGTTCTCTGTATCTCACAATGA 59.791 38.462 0.00 0.00 41.91 2.57
277 278 7.093596 TGTCAGTTCTCTGTATCTCACAATGAT 60.094 37.037 0.00 0.00 41.91 2.45
278 279 8.409371 GTCAGTTCTCTGTATCTCACAATGATA 58.591 37.037 0.00 0.00 41.91 2.15
279 280 8.971073 TCAGTTCTCTGTATCTCACAATGATAA 58.029 33.333 0.00 0.00 41.91 1.75
280 281 9.247126 CAGTTCTCTGTATCTCACAATGATAAG 57.753 37.037 0.00 0.00 36.48 1.73
281 282 8.976353 AGTTCTCTGTATCTCACAATGATAAGT 58.024 33.333 0.00 0.00 36.48 2.24
282 283 9.029243 GTTCTCTGTATCTCACAATGATAAGTG 57.971 37.037 0.00 0.00 36.48 3.16
283 284 8.298729 TCTCTGTATCTCACAATGATAAGTGT 57.701 34.615 0.00 0.00 36.48 3.55
284 285 8.193438 TCTCTGTATCTCACAATGATAAGTGTG 58.807 37.037 4.14 4.14 45.29 3.82
285 286 7.267857 TCTGTATCTCACAATGATAAGTGTGG 58.732 38.462 10.70 2.32 44.29 4.17
286 287 7.124147 TCTGTATCTCACAATGATAAGTGTGGA 59.876 37.037 10.70 7.41 44.29 4.02
287 288 7.041721 TGTATCTCACAATGATAAGTGTGGAC 58.958 38.462 10.70 5.22 44.29 4.02
288 289 4.832248 TCTCACAATGATAAGTGTGGACC 58.168 43.478 10.70 0.00 44.29 4.46
289 290 3.941483 CTCACAATGATAAGTGTGGACCC 59.059 47.826 10.70 0.00 44.29 4.46
290 291 3.016736 CACAATGATAAGTGTGGACCCC 58.983 50.000 2.48 0.00 41.19 4.95
291 292 2.647299 ACAATGATAAGTGTGGACCCCA 59.353 45.455 0.00 0.00 0.00 4.96
301 302 2.938301 TGGACCCCACTTGTCAAGA 58.062 52.632 19.53 0.00 34.36 3.02
302 303 0.764890 TGGACCCCACTTGTCAAGAG 59.235 55.000 19.53 11.17 34.36 2.85
303 304 0.765510 GGACCCCACTTGTCAAGAGT 59.234 55.000 19.53 10.16 34.36 3.24
304 305 1.975680 GGACCCCACTTGTCAAGAGTA 59.024 52.381 19.53 0.00 34.36 2.59
305 306 2.370849 GGACCCCACTTGTCAAGAGTAA 59.629 50.000 19.53 0.00 34.36 2.24
306 307 3.557264 GGACCCCACTTGTCAAGAGTAAG 60.557 52.174 19.53 6.27 34.36 2.34
307 308 2.224548 ACCCCACTTGTCAAGAGTAAGC 60.225 50.000 19.53 0.00 0.00 3.09
308 309 2.224523 CCCCACTTGTCAAGAGTAAGCA 60.225 50.000 19.53 0.00 0.00 3.91
309 310 3.476552 CCCACTTGTCAAGAGTAAGCAA 58.523 45.455 19.53 0.00 0.00 3.91
310 311 3.499918 CCCACTTGTCAAGAGTAAGCAAG 59.500 47.826 19.53 0.00 41.40 4.01
311 312 3.058639 CCACTTGTCAAGAGTAAGCAAGC 60.059 47.826 19.53 0.00 39.86 4.01
312 313 2.802816 ACTTGTCAAGAGTAAGCAAGCG 59.197 45.455 19.53 0.00 39.86 4.68
313 314 2.812358 TGTCAAGAGTAAGCAAGCGA 57.188 45.000 0.00 0.00 0.00 4.93
314 315 3.106242 TGTCAAGAGTAAGCAAGCGAA 57.894 42.857 0.00 0.00 0.00 4.70
315 316 3.664107 TGTCAAGAGTAAGCAAGCGAAT 58.336 40.909 0.00 0.00 0.00 3.34
316 317 4.816392 TGTCAAGAGTAAGCAAGCGAATA 58.184 39.130 0.00 0.00 0.00 1.75
317 318 5.234752 TGTCAAGAGTAAGCAAGCGAATAA 58.765 37.500 0.00 0.00 0.00 1.40
318 319 5.874810 TGTCAAGAGTAAGCAAGCGAATAAT 59.125 36.000 0.00 0.00 0.00 1.28
319 320 6.371548 TGTCAAGAGTAAGCAAGCGAATAATT 59.628 34.615 0.00 0.00 0.00 1.40
320 321 7.094805 TGTCAAGAGTAAGCAAGCGAATAATTT 60.095 33.333 0.00 0.00 0.00 1.82
321 322 7.750903 GTCAAGAGTAAGCAAGCGAATAATTTT 59.249 33.333 0.00 0.00 0.00 1.82
322 323 8.941977 TCAAGAGTAAGCAAGCGAATAATTTTA 58.058 29.630 0.00 0.00 0.00 1.52
323 324 9.214953 CAAGAGTAAGCAAGCGAATAATTTTAG 57.785 33.333 0.00 0.00 0.00 1.85
324 325 8.718102 AGAGTAAGCAAGCGAATAATTTTAGA 57.282 30.769 0.00 0.00 0.00 2.10
325 326 8.821894 AGAGTAAGCAAGCGAATAATTTTAGAG 58.178 33.333 0.00 0.00 0.00 2.43
326 327 8.718102 AGTAAGCAAGCGAATAATTTTAGAGA 57.282 30.769 0.00 0.00 0.00 3.10
327 328 9.162764 AGTAAGCAAGCGAATAATTTTAGAGAA 57.837 29.630 0.00 0.00 0.00 2.87
328 329 9.769093 GTAAGCAAGCGAATAATTTTAGAGAAA 57.231 29.630 0.00 0.00 0.00 2.52
330 331 9.691362 AAGCAAGCGAATAATTTTAGAGAAAAA 57.309 25.926 0.00 0.00 41.21 1.94
346 347 7.145932 AGAGAAAAATAAGAACGATGTTGGG 57.854 36.000 0.00 0.00 0.00 4.12
347 348 6.940298 AGAGAAAAATAAGAACGATGTTGGGA 59.060 34.615 0.00 0.00 0.00 4.37
348 349 7.611855 AGAGAAAAATAAGAACGATGTTGGGAT 59.388 33.333 0.00 0.00 0.00 3.85
349 350 7.762382 AGAAAAATAAGAACGATGTTGGGATC 58.238 34.615 0.00 0.00 0.00 3.36
350 351 7.393234 AGAAAAATAAGAACGATGTTGGGATCA 59.607 33.333 0.00 0.00 0.00 2.92
351 352 7.461182 AAAATAAGAACGATGTTGGGATCAA 57.539 32.000 0.00 0.00 0.00 2.57
352 353 6.683974 AATAAGAACGATGTTGGGATCAAG 57.316 37.500 0.00 0.00 32.92 3.02
353 354 3.703001 AGAACGATGTTGGGATCAAGT 57.297 42.857 0.00 0.00 32.92 3.16
354 355 3.338249 AGAACGATGTTGGGATCAAGTG 58.662 45.455 0.00 0.00 32.92 3.16
355 356 2.113860 ACGATGTTGGGATCAAGTGG 57.886 50.000 0.00 0.00 32.92 4.00
356 357 1.340017 ACGATGTTGGGATCAAGTGGG 60.340 52.381 0.00 0.00 32.92 4.61
357 358 1.065491 CGATGTTGGGATCAAGTGGGA 60.065 52.381 0.00 0.00 32.92 4.37
358 359 2.369394 GATGTTGGGATCAAGTGGGAC 58.631 52.381 0.00 0.00 32.92 4.46
359 360 1.444933 TGTTGGGATCAAGTGGGACT 58.555 50.000 0.00 0.00 32.92 3.85
360 361 1.351017 TGTTGGGATCAAGTGGGACTC 59.649 52.381 0.00 0.00 32.92 3.36
361 362 1.351017 GTTGGGATCAAGTGGGACTCA 59.649 52.381 0.00 0.00 32.92 3.41
362 363 0.984230 TGGGATCAAGTGGGACTCAC 59.016 55.000 0.00 0.00 46.39 3.51
371 372 2.643551 AGTGGGACTCACACTTTGTTG 58.356 47.619 8.24 0.00 46.38 3.33
372 373 2.026262 AGTGGGACTCACACTTTGTTGT 60.026 45.455 8.24 0.00 46.38 3.32
373 374 3.199071 AGTGGGACTCACACTTTGTTGTA 59.801 43.478 8.24 0.00 46.38 2.41
374 375 3.560068 GTGGGACTCACACTTTGTTGTAG 59.440 47.826 3.99 0.00 45.39 2.74
375 376 3.199071 TGGGACTCACACTTTGTTGTAGT 59.801 43.478 0.00 0.00 0.00 2.73
376 377 3.560068 GGGACTCACACTTTGTTGTAGTG 59.440 47.826 0.00 0.00 46.56 2.74
377 378 4.439057 GGACTCACACTTTGTTGTAGTGA 58.561 43.478 9.74 0.00 44.52 3.41
383 384 7.284919 TCACACTTTGTTGTAGTGAGATAGA 57.715 36.000 9.74 0.00 44.52 1.98
384 385 7.722363 TCACACTTTGTTGTAGTGAGATAGAA 58.278 34.615 9.74 0.00 44.52 2.10
385 386 7.867909 TCACACTTTGTTGTAGTGAGATAGAAG 59.132 37.037 9.74 0.00 44.52 2.85
386 387 7.116948 CACACTTTGTTGTAGTGAGATAGAAGG 59.883 40.741 9.74 0.00 44.52 3.46
387 388 7.015292 ACACTTTGTTGTAGTGAGATAGAAGGA 59.985 37.037 9.74 0.00 44.52 3.36
388 389 7.543868 CACTTTGTTGTAGTGAGATAGAAGGAG 59.456 40.741 0.00 0.00 44.52 3.69
389 390 7.451877 ACTTTGTTGTAGTGAGATAGAAGGAGA 59.548 37.037 0.00 0.00 0.00 3.71
390 391 7.397892 TTGTTGTAGTGAGATAGAAGGAGAG 57.602 40.000 0.00 0.00 0.00 3.20
391 392 5.358442 TGTTGTAGTGAGATAGAAGGAGAGC 59.642 44.000 0.00 0.00 0.00 4.09
392 393 5.381184 TGTAGTGAGATAGAAGGAGAGCT 57.619 43.478 0.00 0.00 0.00 4.09
393 394 5.129634 TGTAGTGAGATAGAAGGAGAGCTG 58.870 45.833 0.00 0.00 0.00 4.24
394 395 3.565307 AGTGAGATAGAAGGAGAGCTGG 58.435 50.000 0.00 0.00 0.00 4.85
395 396 2.035832 GTGAGATAGAAGGAGAGCTGGC 59.964 54.545 0.00 0.00 0.00 4.85
396 397 2.315176 GAGATAGAAGGAGAGCTGGCA 58.685 52.381 0.00 0.00 0.00 4.92
397 398 2.899256 GAGATAGAAGGAGAGCTGGCAT 59.101 50.000 0.00 0.00 0.00 4.40
398 399 2.633967 AGATAGAAGGAGAGCTGGCATG 59.366 50.000 0.00 0.00 0.00 4.06
399 400 1.126488 TAGAAGGAGAGCTGGCATGG 58.874 55.000 0.00 0.00 0.00 3.66
400 401 0.913451 AGAAGGAGAGCTGGCATGGT 60.913 55.000 0.00 0.00 0.00 3.55
401 402 0.463474 GAAGGAGAGCTGGCATGGTC 60.463 60.000 0.00 7.70 34.96 4.02
402 403 0.913451 AAGGAGAGCTGGCATGGTCT 60.913 55.000 15.27 15.27 45.97 3.85
403 404 1.153208 GGAGAGCTGGCATGGTCTG 60.153 63.158 18.70 0.00 43.74 3.51
404 405 1.601171 GAGAGCTGGCATGGTCTGT 59.399 57.895 18.70 0.67 43.74 3.41
405 406 0.826715 GAGAGCTGGCATGGTCTGTA 59.173 55.000 18.70 0.00 43.74 2.74
406 407 0.829333 AGAGCTGGCATGGTCTGTAG 59.171 55.000 14.80 0.00 42.36 2.74
407 408 0.179062 GAGCTGGCATGGTCTGTAGG 60.179 60.000 0.00 0.00 0.00 3.18
408 409 0.911525 AGCTGGCATGGTCTGTAGGT 60.912 55.000 0.00 0.00 0.00 3.08
409 410 0.830648 GCTGGCATGGTCTGTAGGTA 59.169 55.000 0.00 0.00 0.00 3.08
410 411 1.417890 GCTGGCATGGTCTGTAGGTAT 59.582 52.381 0.00 0.00 0.00 2.73
411 412 2.158755 GCTGGCATGGTCTGTAGGTATT 60.159 50.000 0.00 0.00 0.00 1.89
412 413 3.685550 GCTGGCATGGTCTGTAGGTATTT 60.686 47.826 0.00 0.00 0.00 1.40
413 414 4.526970 CTGGCATGGTCTGTAGGTATTTT 58.473 43.478 0.00 0.00 0.00 1.82
414 415 4.269183 TGGCATGGTCTGTAGGTATTTTG 58.731 43.478 0.00 0.00 0.00 2.44
415 416 3.632145 GGCATGGTCTGTAGGTATTTTGG 59.368 47.826 0.00 0.00 0.00 3.28
416 417 4.270008 GCATGGTCTGTAGGTATTTTGGT 58.730 43.478 0.00 0.00 0.00 3.67
417 418 4.335594 GCATGGTCTGTAGGTATTTTGGTC 59.664 45.833 0.00 0.00 0.00 4.02
418 419 5.496556 CATGGTCTGTAGGTATTTTGGTCA 58.503 41.667 0.00 0.00 0.00 4.02
419 420 5.772393 TGGTCTGTAGGTATTTTGGTCAT 57.228 39.130 0.00 0.00 0.00 3.06
420 421 6.134535 TGGTCTGTAGGTATTTTGGTCATT 57.865 37.500 0.00 0.00 0.00 2.57
421 422 7.260387 TGGTCTGTAGGTATTTTGGTCATTA 57.740 36.000 0.00 0.00 0.00 1.90
422 423 7.867921 TGGTCTGTAGGTATTTTGGTCATTAT 58.132 34.615 0.00 0.00 0.00 1.28
423 424 8.994500 TGGTCTGTAGGTATTTTGGTCATTATA 58.006 33.333 0.00 0.00 0.00 0.98
424 425 9.841295 GGTCTGTAGGTATTTTGGTCATTATAA 57.159 33.333 0.00 0.00 0.00 0.98
430 431 7.951591 AGGTATTTTGGTCATTATAACATGGC 58.048 34.615 0.00 0.00 0.00 4.40
431 432 7.563188 AGGTATTTTGGTCATTATAACATGGCA 59.437 33.333 0.00 0.00 29.59 4.92
432 433 8.200792 GGTATTTTGGTCATTATAACATGGCAA 58.799 33.333 0.00 0.00 29.59 4.52
433 434 9.593134 GTATTTTGGTCATTATAACATGGCAAA 57.407 29.630 0.00 0.00 29.59 3.68
434 435 7.897575 TTTTGGTCATTATAACATGGCAAAC 57.102 32.000 0.00 0.00 29.59 2.93
435 436 5.242069 TGGTCATTATAACATGGCAAACG 57.758 39.130 0.00 0.00 29.59 3.60
436 437 4.944317 TGGTCATTATAACATGGCAAACGA 59.056 37.500 0.00 0.00 29.59 3.85
437 438 5.065859 TGGTCATTATAACATGGCAAACGAG 59.934 40.000 0.00 0.00 29.59 4.18
438 439 5.295787 GGTCATTATAACATGGCAAACGAGA 59.704 40.000 0.00 0.00 29.59 4.04
439 440 6.017109 GGTCATTATAACATGGCAAACGAGAT 60.017 38.462 0.00 0.00 29.59 2.75
440 441 7.417612 GTCATTATAACATGGCAAACGAGATT 58.582 34.615 0.00 0.00 0.00 2.40
441 442 7.915397 GTCATTATAACATGGCAAACGAGATTT 59.085 33.333 0.00 0.00 0.00 2.17
452 453 3.393089 AACGAGATTTGAGCTCACAGT 57.607 42.857 18.03 5.03 32.67 3.55
453 454 4.521130 AACGAGATTTGAGCTCACAGTA 57.479 40.909 18.03 0.00 32.67 2.74
454 455 4.521130 ACGAGATTTGAGCTCACAGTAA 57.479 40.909 18.03 8.62 32.67 2.24
455 456 5.078411 ACGAGATTTGAGCTCACAGTAAT 57.922 39.130 18.03 13.57 32.67 1.89
456 457 4.867047 ACGAGATTTGAGCTCACAGTAATG 59.133 41.667 18.03 6.65 32.67 1.90
457 458 5.105063 CGAGATTTGAGCTCACAGTAATGA 58.895 41.667 18.03 0.00 32.67 2.57
458 459 5.752472 CGAGATTTGAGCTCACAGTAATGAT 59.248 40.000 18.03 4.55 32.67 2.45
459 460 6.292221 CGAGATTTGAGCTCACAGTAATGATG 60.292 42.308 18.03 1.76 32.67 3.07
460 461 6.413052 AGATTTGAGCTCACAGTAATGATGT 58.587 36.000 18.03 0.00 0.00 3.06
461 462 6.538021 AGATTTGAGCTCACAGTAATGATGTC 59.462 38.462 18.03 0.93 0.00 3.06
462 463 4.128925 TGAGCTCACAGTAATGATGTCC 57.871 45.455 13.74 0.00 0.00 4.02
463 464 3.515104 TGAGCTCACAGTAATGATGTCCA 59.485 43.478 13.74 0.00 0.00 4.02
464 465 4.118410 GAGCTCACAGTAATGATGTCCAG 58.882 47.826 9.40 0.00 0.00 3.86
465 466 3.517100 AGCTCACAGTAATGATGTCCAGT 59.483 43.478 0.00 0.00 0.00 4.00
466 467 3.620374 GCTCACAGTAATGATGTCCAGTG 59.380 47.826 0.00 0.00 0.00 3.66
467 468 4.186926 CTCACAGTAATGATGTCCAGTGG 58.813 47.826 1.40 1.40 0.00 4.00
468 469 2.679837 CACAGTAATGATGTCCAGTGGC 59.320 50.000 3.51 0.00 0.00 5.01
469 470 2.305635 ACAGTAATGATGTCCAGTGGCA 59.694 45.455 3.51 6.52 0.00 4.92
470 471 3.054139 ACAGTAATGATGTCCAGTGGCAT 60.054 43.478 16.08 16.08 0.00 4.40
471 472 3.949754 CAGTAATGATGTCCAGTGGCATT 59.050 43.478 16.88 15.76 34.05 3.56
472 473 4.400251 CAGTAATGATGTCCAGTGGCATTT 59.600 41.667 15.28 11.25 32.13 2.32
473 474 5.018809 AGTAATGATGTCCAGTGGCATTTT 58.981 37.500 15.28 14.68 32.13 1.82
474 475 4.895668 AATGATGTCCAGTGGCATTTTT 57.104 36.364 16.88 11.98 0.00 1.94
475 476 3.663995 TGATGTCCAGTGGCATTTTTG 57.336 42.857 16.88 0.00 0.00 2.44
476 477 3.229293 TGATGTCCAGTGGCATTTTTGA 58.771 40.909 16.88 0.00 0.00 2.69
477 478 3.256383 TGATGTCCAGTGGCATTTTTGAG 59.744 43.478 16.88 0.00 0.00 3.02
478 479 1.340889 TGTCCAGTGGCATTTTTGAGC 59.659 47.619 3.51 0.00 0.00 4.26
479 480 1.340889 GTCCAGTGGCATTTTTGAGCA 59.659 47.619 3.51 0.00 0.00 4.26
480 481 2.028748 GTCCAGTGGCATTTTTGAGCAT 60.029 45.455 3.51 0.00 0.00 3.79
481 482 2.028839 TCCAGTGGCATTTTTGAGCATG 60.029 45.455 3.51 0.00 0.00 4.06
482 483 1.730064 CAGTGGCATTTTTGAGCATGC 59.270 47.619 10.51 10.51 44.39 4.06
483 484 1.621814 AGTGGCATTTTTGAGCATGCT 59.378 42.857 22.92 22.92 44.50 3.79
484 485 2.038033 AGTGGCATTTTTGAGCATGCTT 59.962 40.909 23.61 5.39 44.50 3.91
485 486 2.158841 GTGGCATTTTTGAGCATGCTTG 59.841 45.455 23.61 15.84 44.50 4.01
486 487 2.037381 TGGCATTTTTGAGCATGCTTGA 59.963 40.909 23.61 10.85 44.50 3.02
487 488 2.671396 GGCATTTTTGAGCATGCTTGAG 59.329 45.455 23.61 9.01 44.50 3.02
488 489 2.093783 GCATTTTTGAGCATGCTTGAGC 59.906 45.455 23.61 14.81 42.25 4.26
504 505 6.006759 GCTTGAGCAGTTGAAATTCTTAGT 57.993 37.500 0.00 0.00 41.59 2.24
505 506 5.855395 GCTTGAGCAGTTGAAATTCTTAGTG 59.145 40.000 0.00 0.00 41.59 2.74
506 507 5.947228 TGAGCAGTTGAAATTCTTAGTGG 57.053 39.130 0.00 0.00 0.00 4.00
507 508 4.216257 TGAGCAGTTGAAATTCTTAGTGGC 59.784 41.667 0.00 0.00 0.00 5.01
508 509 4.144297 AGCAGTTGAAATTCTTAGTGGCA 58.856 39.130 0.00 0.00 0.00 4.92
509 510 4.584325 AGCAGTTGAAATTCTTAGTGGCAA 59.416 37.500 0.00 0.00 0.00 4.52
510 511 5.068987 AGCAGTTGAAATTCTTAGTGGCAAA 59.931 36.000 0.00 0.00 0.00 3.68
511 512 5.752955 GCAGTTGAAATTCTTAGTGGCAAAA 59.247 36.000 0.00 0.00 0.00 2.44
512 513 6.292328 GCAGTTGAAATTCTTAGTGGCAAAAC 60.292 38.462 0.00 0.00 0.00 2.43
513 514 6.980397 CAGTTGAAATTCTTAGTGGCAAAACT 59.020 34.615 0.00 0.00 0.00 2.66
514 515 7.168135 CAGTTGAAATTCTTAGTGGCAAAACTC 59.832 37.037 0.00 0.00 0.00 3.01
515 516 6.707440 TGAAATTCTTAGTGGCAAAACTCA 57.293 33.333 0.00 0.00 0.00 3.41
516 517 6.738114 TGAAATTCTTAGTGGCAAAACTCAG 58.262 36.000 0.00 0.00 0.00 3.35
517 518 6.321181 TGAAATTCTTAGTGGCAAAACTCAGT 59.679 34.615 0.00 0.00 0.00 3.41
518 519 7.500892 TGAAATTCTTAGTGGCAAAACTCAGTA 59.499 33.333 0.00 0.00 0.00 2.74
519 520 7.440523 AATTCTTAGTGGCAAAACTCAGTAG 57.559 36.000 0.00 0.00 0.00 2.57
520 521 5.546621 TCTTAGTGGCAAAACTCAGTAGT 57.453 39.130 0.00 0.00 37.65 2.73
521 522 5.297547 TCTTAGTGGCAAAACTCAGTAGTG 58.702 41.667 0.00 0.00 35.62 2.74
522 523 3.838244 AGTGGCAAAACTCAGTAGTGA 57.162 42.857 0.00 0.00 35.62 3.41
534 535 4.955811 TCAGTAGTGAGACACAACCAAT 57.044 40.909 0.00 0.00 36.74 3.16
536 537 6.413783 TCAGTAGTGAGACACAACCAATAA 57.586 37.500 0.00 0.00 36.74 1.40
537 538 6.220930 TCAGTAGTGAGACACAACCAATAAC 58.779 40.000 0.00 0.00 36.74 1.89
538 539 5.989168 CAGTAGTGAGACACAACCAATAACA 59.011 40.000 4.75 0.00 36.74 2.41
539 540 6.650807 CAGTAGTGAGACACAACCAATAACAT 59.349 38.462 4.75 0.00 36.74 2.71
540 541 7.817478 CAGTAGTGAGACACAACCAATAACATA 59.183 37.037 4.75 0.00 36.74 2.29
541 542 8.372459 AGTAGTGAGACACAACCAATAACATAA 58.628 33.333 4.75 0.00 36.74 1.90
542 543 8.995220 GTAGTGAGACACAACCAATAACATAAA 58.005 33.333 4.75 0.00 36.74 1.40
543 544 8.635765 AGTGAGACACAACCAATAACATAAAT 57.364 30.769 4.75 0.00 36.74 1.40
544 545 8.514594 AGTGAGACACAACCAATAACATAAATG 58.485 33.333 4.75 0.00 36.74 2.32
545 546 8.511321 GTGAGACACAACCAATAACATAAATGA 58.489 33.333 0.00 0.00 34.08 2.57
546 547 9.241919 TGAGACACAACCAATAACATAAATGAT 57.758 29.630 0.00 0.00 0.00 2.45
586 587 8.662781 AAAAAGAAAAGAAAATAAGCCAGACC 57.337 30.769 0.00 0.00 0.00 3.85
587 588 5.984695 AGAAAAGAAAATAAGCCAGACCC 57.015 39.130 0.00 0.00 0.00 4.46
663 666 2.435586 CCTCTGCCCAACGAGCTG 60.436 66.667 0.00 0.00 0.00 4.24
739 742 4.760220 ATCGCCCCCAAGTCCCCT 62.760 66.667 0.00 0.00 0.00 4.79
749 752 1.982938 AAGTCCCCTCCGGAACTCG 60.983 63.158 5.23 0.00 44.47 4.18
799 802 1.705997 CCTACCCCAAGAATCCCCCG 61.706 65.000 0.00 0.00 0.00 5.73
818 821 1.706287 GAAATCGCGCTCCCACTTCC 61.706 60.000 5.56 0.00 0.00 3.46
823 826 3.764466 CGCTCCCACTTCCGCTCT 61.764 66.667 0.00 0.00 0.00 4.09
824 827 2.185608 GCTCCCACTTCCGCTCTC 59.814 66.667 0.00 0.00 0.00 3.20
825 828 2.896443 CTCCCACTTCCGCTCTCC 59.104 66.667 0.00 0.00 0.00 3.71
854 857 0.240145 CTAGTTGACTCCGTCACGCA 59.760 55.000 0.00 0.00 42.60 5.24
902 907 3.432326 GCCCATCCGGTGATAGATATTCC 60.432 52.174 0.00 0.00 0.00 3.01
909 916 3.257393 GGTGATAGATATTCCTGCAGCG 58.743 50.000 8.66 1.56 0.00 5.18
947 954 3.710722 CTGCACCCGCTCCCTTCT 61.711 66.667 0.00 0.00 39.64 2.85
950 957 2.960688 GCACCCGCTCCCTTCTCTT 61.961 63.158 0.00 0.00 34.30 2.85
978 985 0.250640 CTGAACTCTGCAGCTTGGGT 60.251 55.000 9.47 0.00 0.00 4.51
1500 1528 1.337728 TGTCGGGTGCTAGATGTGTTG 60.338 52.381 0.00 0.00 0.00 3.33
1539 1567 0.035317 TCCTTGCGAGCATCTTGTGT 59.965 50.000 0.00 0.00 0.00 3.72
1548 1576 2.735663 GAGCATCTTGTGTCAGTCAGTG 59.264 50.000 0.00 0.00 0.00 3.66
1838 1877 1.620323 TGATGATGAGGTATGCTCCCG 59.380 52.381 0.00 0.00 0.00 5.14
1854 1985 3.692593 GCTCCCGTTTTTGCTAATTCCTA 59.307 43.478 0.00 0.00 0.00 2.94
2839 3326 3.084786 ACCTAGTTTGAAGCAGCATTCC 58.915 45.455 0.00 0.00 0.00 3.01
2849 3336 3.611766 AGCAGCATTCCGTACTAGTTT 57.388 42.857 0.00 0.00 0.00 2.66
3224 3719 1.228367 AAGTGGCTTGCTGGTCCAG 60.228 57.895 15.15 15.15 34.12 3.86
3442 3945 1.004918 CTCCCCGTGTCCTGTTCAC 60.005 63.158 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.212593 ACTAATGGCATAAATGATAAAAACCCT 57.787 29.630 0.00 0.00 0.00 4.34
25 26 9.461312 GGGACATAACTAATGGCATAAATGATA 57.539 33.333 0.00 0.00 46.56 2.15
26 27 7.949565 TGGGACATAACTAATGGCATAAATGAT 59.050 33.333 0.00 0.00 46.56 2.45
27 28 7.230510 GTGGGACATAACTAATGGCATAAATGA 59.769 37.037 0.00 0.00 46.56 2.57
28 29 7.231317 AGTGGGACATAACTAATGGCATAAATG 59.769 37.037 0.00 3.41 46.56 2.32
29 30 7.297614 AGTGGGACATAACTAATGGCATAAAT 58.702 34.615 0.00 0.00 46.56 1.40
30 31 6.668645 AGTGGGACATAACTAATGGCATAAA 58.331 36.000 0.00 0.00 46.56 1.40
31 32 6.260700 AGTGGGACATAACTAATGGCATAA 57.739 37.500 0.00 0.00 46.56 1.90
32 33 5.904984 AGTGGGACATAACTAATGGCATA 57.095 39.130 0.00 0.00 46.56 3.14
33 34 4.796110 AGTGGGACATAACTAATGGCAT 57.204 40.909 0.00 0.00 46.56 4.40
34 35 4.719773 AGTAGTGGGACATAACTAATGGCA 59.280 41.667 0.00 0.00 46.56 4.92
35 36 5.163343 TGAGTAGTGGGACATAACTAATGGC 60.163 44.000 0.00 0.00 44.52 4.40
36 37 6.098409 ACTGAGTAGTGGGACATAACTAATGG 59.902 42.308 0.00 0.00 44.52 3.16
37 38 7.113658 ACTGAGTAGTGGGACATAACTAATG 57.886 40.000 0.00 0.00 44.52 1.90
38 39 7.735326 AACTGAGTAGTGGGACATAACTAAT 57.265 36.000 0.00 0.00 44.52 1.73
39 40 7.549147 AAACTGAGTAGTGGGACATAACTAA 57.451 36.000 0.00 0.00 44.52 2.24
40 41 7.383687 CAAAACTGAGTAGTGGGACATAACTA 58.616 38.462 0.00 0.00 44.52 2.24
41 42 6.231211 CAAAACTGAGTAGTGGGACATAACT 58.769 40.000 0.00 0.00 44.52 2.24
42 43 5.106673 GCAAAACTGAGTAGTGGGACATAAC 60.107 44.000 0.00 0.00 44.52 1.89
43 44 5.001232 GCAAAACTGAGTAGTGGGACATAA 58.999 41.667 0.00 0.00 44.52 1.90
44 45 4.564821 GGCAAAACTGAGTAGTGGGACATA 60.565 45.833 0.00 0.00 44.52 2.29
45 46 3.412386 GCAAAACTGAGTAGTGGGACAT 58.588 45.455 0.00 0.00 44.52 3.06
46 47 2.486548 GGCAAAACTGAGTAGTGGGACA 60.487 50.000 0.00 0.00 37.19 4.02
47 48 2.152016 GGCAAAACTGAGTAGTGGGAC 58.848 52.381 0.00 0.00 37.19 4.46
48 49 1.771854 TGGCAAAACTGAGTAGTGGGA 59.228 47.619 0.00 0.00 37.19 4.37
49 50 1.880027 GTGGCAAAACTGAGTAGTGGG 59.120 52.381 0.00 0.00 37.19 4.61
50 51 2.851195 AGTGGCAAAACTGAGTAGTGG 58.149 47.619 0.00 0.00 37.19 4.00
51 52 4.883083 TCTAGTGGCAAAACTGAGTAGTG 58.117 43.478 0.00 0.00 37.19 2.74
52 53 5.012148 ACATCTAGTGGCAAAACTGAGTAGT 59.988 40.000 0.00 0.00 39.32 2.73
53 54 5.482908 ACATCTAGTGGCAAAACTGAGTAG 58.517 41.667 0.00 0.00 0.00 2.57
54 55 5.483685 ACATCTAGTGGCAAAACTGAGTA 57.516 39.130 0.00 0.00 0.00 2.59
55 56 4.357918 ACATCTAGTGGCAAAACTGAGT 57.642 40.909 0.00 0.00 0.00 3.41
56 57 5.700832 TGTAACATCTAGTGGCAAAACTGAG 59.299 40.000 0.00 0.00 0.00 3.35
57 58 5.616270 TGTAACATCTAGTGGCAAAACTGA 58.384 37.500 0.00 0.00 0.00 3.41
58 59 5.940192 TGTAACATCTAGTGGCAAAACTG 57.060 39.130 0.00 0.00 0.00 3.16
59 60 6.017109 CAGTTGTAACATCTAGTGGCAAAACT 60.017 38.462 0.00 0.00 0.00 2.66
60 61 6.142817 CAGTTGTAACATCTAGTGGCAAAAC 58.857 40.000 0.00 0.00 0.00 2.43
61 62 5.278266 GCAGTTGTAACATCTAGTGGCAAAA 60.278 40.000 0.00 0.00 0.00 2.44
62 63 4.215399 GCAGTTGTAACATCTAGTGGCAAA 59.785 41.667 0.00 0.00 0.00 3.68
63 64 3.751175 GCAGTTGTAACATCTAGTGGCAA 59.249 43.478 0.00 0.00 0.00 4.52
64 65 3.007940 AGCAGTTGTAACATCTAGTGGCA 59.992 43.478 0.00 0.00 0.00 4.92
65 66 3.600388 AGCAGTTGTAACATCTAGTGGC 58.400 45.455 0.00 0.00 0.00 5.01
66 67 7.667043 TTTTAGCAGTTGTAACATCTAGTGG 57.333 36.000 0.00 0.00 0.00 4.00
88 89 3.252215 TCTCACGAAACGATGGCATTTTT 59.748 39.130 0.00 4.53 0.00 1.94
89 90 2.811431 TCTCACGAAACGATGGCATTTT 59.189 40.909 0.00 0.00 0.00 1.82
90 91 2.422597 TCTCACGAAACGATGGCATTT 58.577 42.857 0.00 0.00 0.00 2.32
91 92 2.093306 TCTCACGAAACGATGGCATT 57.907 45.000 0.00 0.00 0.00 3.56
92 93 1.935873 CATCTCACGAAACGATGGCAT 59.064 47.619 0.00 0.00 32.84 4.40
93 94 1.358877 CATCTCACGAAACGATGGCA 58.641 50.000 0.00 0.00 32.84 4.92
94 95 0.652592 CCATCTCACGAAACGATGGC 59.347 55.000 12.25 0.00 45.26 4.40
96 97 2.474526 GCAACCATCTCACGAAACGATG 60.475 50.000 0.00 0.00 35.48 3.84
97 98 1.732259 GCAACCATCTCACGAAACGAT 59.268 47.619 0.00 0.00 0.00 3.73
98 99 1.144969 GCAACCATCTCACGAAACGA 58.855 50.000 0.00 0.00 0.00 3.85
99 100 1.126846 GAGCAACCATCTCACGAAACG 59.873 52.381 0.00 0.00 0.00 3.60
100 101 2.143122 TGAGCAACCATCTCACGAAAC 58.857 47.619 0.00 0.00 35.81 2.78
101 102 2.542020 TGAGCAACCATCTCACGAAA 57.458 45.000 0.00 0.00 35.81 3.46
102 103 2.542020 TTGAGCAACCATCTCACGAA 57.458 45.000 0.00 0.00 39.99 3.85
103 104 2.542020 TTTGAGCAACCATCTCACGA 57.458 45.000 0.00 0.00 39.99 4.35
104 105 3.624326 TTTTTGAGCAACCATCTCACG 57.376 42.857 0.00 0.00 39.99 4.35
105 106 3.676646 GCATTTTTGAGCAACCATCTCAC 59.323 43.478 0.00 0.00 39.99 3.51
106 107 3.321396 TGCATTTTTGAGCAACCATCTCA 59.679 39.130 0.00 0.00 37.90 3.27
107 108 3.916761 TGCATTTTTGAGCAACCATCTC 58.083 40.909 0.00 0.00 37.90 2.75
108 109 4.339872 TTGCATTTTTGAGCAACCATCT 57.660 36.364 0.00 0.00 44.98 2.90
131 132 9.554395 TGGAACGATGCATTTTTAAGATATCTA 57.446 29.630 5.46 0.00 0.00 1.98
132 133 8.450578 TGGAACGATGCATTTTTAAGATATCT 57.549 30.769 0.00 0.00 0.00 1.98
133 134 9.683069 AATGGAACGATGCATTTTTAAGATATC 57.317 29.630 6.59 0.00 44.15 1.63
136 137 8.137437 CCTAATGGAACGATGCATTTTTAAGAT 58.863 33.333 16.99 0.00 44.15 2.40
137 138 7.122055 ACCTAATGGAACGATGCATTTTTAAGA 59.878 33.333 16.99 0.00 44.15 2.10
138 139 7.220683 CACCTAATGGAACGATGCATTTTTAAG 59.779 37.037 16.99 8.68 44.15 1.85
139 140 7.032580 CACCTAATGGAACGATGCATTTTTAA 58.967 34.615 16.99 0.00 44.15 1.52
140 141 6.151985 ACACCTAATGGAACGATGCATTTTTA 59.848 34.615 16.99 0.00 44.15 1.52
141 142 5.047377 ACACCTAATGGAACGATGCATTTTT 60.047 36.000 16.99 0.00 44.15 1.94
142 143 4.462483 ACACCTAATGGAACGATGCATTTT 59.538 37.500 16.99 0.00 44.15 1.82
143 144 4.016444 ACACCTAATGGAACGATGCATTT 58.984 39.130 16.99 0.00 44.15 2.32
145 146 3.281727 ACACCTAATGGAACGATGCAT 57.718 42.857 0.00 0.00 39.58 3.96
146 147 2.779755 ACACCTAATGGAACGATGCA 57.220 45.000 0.00 0.00 37.04 3.96
147 148 3.758300 CAAACACCTAATGGAACGATGC 58.242 45.455 0.00 0.00 37.04 3.91
148 149 3.440173 AGCAAACACCTAATGGAACGATG 59.560 43.478 0.00 0.00 37.04 3.84
149 150 3.686016 AGCAAACACCTAATGGAACGAT 58.314 40.909 0.00 0.00 37.04 3.73
150 151 3.071479 GAGCAAACACCTAATGGAACGA 58.929 45.455 0.00 0.00 37.04 3.85
151 152 2.811431 TGAGCAAACACCTAATGGAACG 59.189 45.455 0.00 0.00 37.04 3.95
152 153 4.846779 TTGAGCAAACACCTAATGGAAC 57.153 40.909 0.00 0.00 37.04 3.62
153 154 5.860941 TTTTGAGCAAACACCTAATGGAA 57.139 34.783 0.00 0.00 37.04 3.53
154 155 5.860941 TTTTTGAGCAAACACCTAATGGA 57.139 34.783 0.00 0.00 37.04 3.41
155 156 5.106987 GCATTTTTGAGCAAACACCTAATGG 60.107 40.000 14.28 0.00 39.83 3.16
156 157 5.106987 GGCATTTTTGAGCAAACACCTAATG 60.107 40.000 10.62 10.62 31.65 1.90
157 158 4.996758 GGCATTTTTGAGCAAACACCTAAT 59.003 37.500 0.00 0.00 0.00 1.73
158 159 4.141846 TGGCATTTTTGAGCAAACACCTAA 60.142 37.500 0.00 0.00 0.00 2.69
159 160 3.386078 TGGCATTTTTGAGCAAACACCTA 59.614 39.130 0.00 0.00 0.00 3.08
160 161 2.170187 TGGCATTTTTGAGCAAACACCT 59.830 40.909 0.00 0.00 0.00 4.00
161 162 2.559440 TGGCATTTTTGAGCAAACACC 58.441 42.857 0.00 0.00 0.00 4.16
162 163 4.529446 CAATGGCATTTTTGAGCAAACAC 58.471 39.130 10.65 0.00 0.00 3.32
163 164 3.564644 CCAATGGCATTTTTGAGCAAACA 59.435 39.130 10.65 0.00 0.00 2.83
164 165 3.814283 TCCAATGGCATTTTTGAGCAAAC 59.186 39.130 10.65 0.00 0.00 2.93
165 166 3.814283 GTCCAATGGCATTTTTGAGCAAA 59.186 39.130 10.65 0.00 0.00 3.68
166 167 3.181457 TGTCCAATGGCATTTTTGAGCAA 60.181 39.130 10.65 0.00 0.00 3.91
167 168 2.367894 TGTCCAATGGCATTTTTGAGCA 59.632 40.909 10.65 6.26 0.00 4.26
168 169 2.738314 GTGTCCAATGGCATTTTTGAGC 59.262 45.455 10.65 4.07 0.00 4.26
169 170 3.244146 TGGTGTCCAATGGCATTTTTGAG 60.244 43.478 10.65 0.00 0.00 3.02
170 171 2.702478 TGGTGTCCAATGGCATTTTTGA 59.298 40.909 10.65 4.92 0.00 2.69
171 172 3.123157 TGGTGTCCAATGGCATTTTTG 57.877 42.857 10.65 0.62 0.00 2.44
172 173 3.617045 CGATGGTGTCCAATGGCATTTTT 60.617 43.478 10.65 0.00 36.95 1.94
173 174 2.094078 CGATGGTGTCCAATGGCATTTT 60.094 45.455 10.65 0.00 36.95 1.82
174 175 1.477700 CGATGGTGTCCAATGGCATTT 59.522 47.619 10.65 0.00 36.95 2.32
175 176 1.105457 CGATGGTGTCCAATGGCATT 58.895 50.000 6.96 6.96 36.95 3.56
176 177 0.034186 ACGATGGTGTCCAATGGCAT 60.034 50.000 0.00 0.00 36.95 4.40
177 178 0.251121 AACGATGGTGTCCAATGGCA 60.251 50.000 0.00 0.00 36.95 4.92
178 179 0.171007 CAACGATGGTGTCCAATGGC 59.829 55.000 0.00 0.00 36.95 4.40
179 180 1.468520 GACAACGATGGTGTCCAATGG 59.531 52.381 3.61 0.00 36.95 3.16
180 181 2.150390 TGACAACGATGGTGTCCAATG 58.850 47.619 12.08 0.00 36.95 2.82
181 182 2.426522 CTGACAACGATGGTGTCCAAT 58.573 47.619 12.08 0.00 36.95 3.16
182 183 1.542328 CCTGACAACGATGGTGTCCAA 60.542 52.381 12.08 0.00 36.95 3.53
183 184 0.034756 CCTGACAACGATGGTGTCCA 59.965 55.000 12.08 0.74 38.19 4.02
184 185 0.034896 ACCTGACAACGATGGTGTCC 59.965 55.000 12.08 0.00 0.00 4.02
185 186 1.270094 TGACCTGACAACGATGGTGTC 60.270 52.381 8.01 8.01 32.30 3.67
186 187 0.756294 TGACCTGACAACGATGGTGT 59.244 50.000 0.00 0.00 32.30 4.16
187 188 1.877637 TTGACCTGACAACGATGGTG 58.122 50.000 0.00 0.00 32.30 4.17
188 189 2.158813 AGTTTGACCTGACAACGATGGT 60.159 45.455 0.00 0.00 35.23 3.55
189 190 2.480419 GAGTTTGACCTGACAACGATGG 59.520 50.000 0.00 0.00 0.00 3.51
190 191 2.155732 CGAGTTTGACCTGACAACGATG 59.844 50.000 0.00 0.00 0.00 3.84
191 192 2.223971 ACGAGTTTGACCTGACAACGAT 60.224 45.455 0.00 0.00 0.00 3.73
192 193 1.135527 ACGAGTTTGACCTGACAACGA 59.864 47.619 0.00 0.00 0.00 3.85
193 194 1.567504 ACGAGTTTGACCTGACAACG 58.432 50.000 0.00 0.00 0.00 4.10
194 195 2.933906 TCAACGAGTTTGACCTGACAAC 59.066 45.455 0.00 0.00 39.45 3.32
195 196 3.254470 TCAACGAGTTTGACCTGACAA 57.746 42.857 0.00 0.00 39.45 3.18
196 197 2.971660 TCAACGAGTTTGACCTGACA 57.028 45.000 0.00 0.00 39.45 3.58
203 204 6.315144 CCATATAACATGGTCAACGAGTTTGA 59.685 38.462 0.00 0.00 42.26 2.69
204 205 6.486248 CCATATAACATGGTCAACGAGTTTG 58.514 40.000 0.00 0.00 34.56 2.93
205 206 5.065988 GCCATATAACATGGTCAACGAGTTT 59.934 40.000 0.00 0.00 41.17 2.66
206 207 4.574828 GCCATATAACATGGTCAACGAGTT 59.425 41.667 0.00 0.00 41.17 3.01
207 208 4.127171 GCCATATAACATGGTCAACGAGT 58.873 43.478 0.00 0.00 41.17 4.18
208 209 3.184379 CGCCATATAACATGGTCAACGAG 59.816 47.826 0.00 0.00 41.17 4.18
209 210 3.127589 CGCCATATAACATGGTCAACGA 58.872 45.455 0.00 0.00 41.17 3.85
210 211 3.127589 TCGCCATATAACATGGTCAACG 58.872 45.455 0.00 0.90 41.17 4.10
211 212 5.493133 TTTCGCCATATAACATGGTCAAC 57.507 39.130 0.00 0.00 41.17 3.18
212 213 6.707440 ATTTTCGCCATATAACATGGTCAA 57.293 33.333 0.00 0.00 41.17 3.18
213 214 6.205853 GGTATTTTCGCCATATAACATGGTCA 59.794 38.462 0.00 0.00 41.17 4.02
214 215 6.349033 GGGTATTTTCGCCATATAACATGGTC 60.349 42.308 0.00 0.00 41.17 4.02
215 216 5.475564 GGGTATTTTCGCCATATAACATGGT 59.524 40.000 0.00 0.00 41.17 3.55
216 217 5.105917 GGGGTATTTTCGCCATATAACATGG 60.106 44.000 0.00 0.00 41.99 3.66
217 218 5.710099 AGGGGTATTTTCGCCATATAACATG 59.290 40.000 0.00 0.00 41.92 3.21
218 219 5.710099 CAGGGGTATTTTCGCCATATAACAT 59.290 40.000 0.00 0.00 41.92 2.71
219 220 5.067273 CAGGGGTATTTTCGCCATATAACA 58.933 41.667 0.00 0.00 41.92 2.41
220 221 5.067954 ACAGGGGTATTTTCGCCATATAAC 58.932 41.667 0.00 0.00 41.92 1.89
221 222 5.313280 ACAGGGGTATTTTCGCCATATAA 57.687 39.130 0.00 0.00 41.92 0.98
222 223 4.986054 ACAGGGGTATTTTCGCCATATA 57.014 40.909 0.00 0.00 41.92 0.86
223 224 3.876309 ACAGGGGTATTTTCGCCATAT 57.124 42.857 0.00 0.00 41.92 1.78
224 225 3.181452 GGTACAGGGGTATTTTCGCCATA 60.181 47.826 0.00 0.00 41.92 2.74
225 226 2.422377 GGTACAGGGGTATTTTCGCCAT 60.422 50.000 0.00 0.00 41.92 4.40
226 227 1.065272 GGTACAGGGGTATTTTCGCCA 60.065 52.381 0.00 0.00 41.92 5.69
227 228 1.671979 GGTACAGGGGTATTTTCGCC 58.328 55.000 0.00 0.00 40.15 5.54
228 229 1.065272 TGGGTACAGGGGTATTTTCGC 60.065 52.381 0.00 0.00 0.00 4.70
229 230 3.353370 TTGGGTACAGGGGTATTTTCG 57.647 47.619 0.00 0.00 0.00 3.46
230 231 5.020795 ACATTTGGGTACAGGGGTATTTTC 58.979 41.667 0.00 0.00 0.00 2.29
231 232 5.018374 ACATTTGGGTACAGGGGTATTTT 57.982 39.130 0.00 0.00 0.00 1.82
232 233 4.044825 TGACATTTGGGTACAGGGGTATTT 59.955 41.667 0.00 0.00 0.00 1.40
233 234 3.594232 TGACATTTGGGTACAGGGGTATT 59.406 43.478 0.00 0.00 0.00 1.89
234 235 3.194620 TGACATTTGGGTACAGGGGTAT 58.805 45.455 0.00 0.00 0.00 2.73
235 236 2.574369 CTGACATTTGGGTACAGGGGTA 59.426 50.000 0.00 0.00 0.00 3.69
236 237 1.354368 CTGACATTTGGGTACAGGGGT 59.646 52.381 0.00 0.00 0.00 4.95
237 238 1.354368 ACTGACATTTGGGTACAGGGG 59.646 52.381 0.00 0.00 33.57 4.79
238 239 2.879103 ACTGACATTTGGGTACAGGG 57.121 50.000 0.00 0.00 33.57 4.45
239 240 4.003648 GAGAACTGACATTTGGGTACAGG 58.996 47.826 0.00 0.00 33.57 4.00
240 241 4.692625 CAGAGAACTGACATTTGGGTACAG 59.307 45.833 0.00 0.00 46.03 2.74
241 242 4.102524 ACAGAGAACTGACATTTGGGTACA 59.897 41.667 0.00 0.00 46.03 2.90
242 243 4.642429 ACAGAGAACTGACATTTGGGTAC 58.358 43.478 0.00 0.00 46.03 3.34
243 244 4.974645 ACAGAGAACTGACATTTGGGTA 57.025 40.909 0.00 0.00 46.03 3.69
244 245 3.864789 ACAGAGAACTGACATTTGGGT 57.135 42.857 0.00 0.00 46.03 4.51
245 246 5.738909 AGATACAGAGAACTGACATTTGGG 58.261 41.667 0.00 0.00 46.03 4.12
246 247 6.312426 GTGAGATACAGAGAACTGACATTTGG 59.688 42.308 0.00 0.00 46.03 3.28
247 248 6.870439 TGTGAGATACAGAGAACTGACATTTG 59.130 38.462 0.00 0.00 46.03 2.32
248 249 6.997655 TGTGAGATACAGAGAACTGACATTT 58.002 36.000 0.00 0.00 46.03 2.32
249 250 6.596309 TGTGAGATACAGAGAACTGACATT 57.404 37.500 0.00 0.00 46.03 2.71
250 251 6.596309 TTGTGAGATACAGAGAACTGACAT 57.404 37.500 0.00 0.00 46.03 3.06
251 252 6.209391 TCATTGTGAGATACAGAGAACTGACA 59.791 38.462 0.00 0.00 46.03 3.58
252 253 6.625362 TCATTGTGAGATACAGAGAACTGAC 58.375 40.000 0.00 0.00 46.03 3.51
253 254 6.840780 TCATTGTGAGATACAGAGAACTGA 57.159 37.500 0.00 0.00 46.03 3.41
255 256 8.976353 ACTTATCATTGTGAGATACAGAGAACT 58.024 33.333 0.00 0.00 41.10 3.01
256 257 9.029243 CACTTATCATTGTGAGATACAGAGAAC 57.971 37.037 0.00 0.00 41.10 3.01
257 258 8.753133 ACACTTATCATTGTGAGATACAGAGAA 58.247 33.333 0.00 0.00 41.10 2.87
258 259 8.193438 CACACTTATCATTGTGAGATACAGAGA 58.807 37.037 0.00 0.00 45.03 3.10
259 260 7.437565 CCACACTTATCATTGTGAGATACAGAG 59.562 40.741 3.30 0.00 45.03 3.35
260 261 7.124147 TCCACACTTATCATTGTGAGATACAGA 59.876 37.037 3.30 0.00 45.03 3.41
261 262 7.223582 GTCCACACTTATCATTGTGAGATACAG 59.776 40.741 3.30 0.00 45.03 2.74
262 263 7.041721 GTCCACACTTATCATTGTGAGATACA 58.958 38.462 3.30 0.00 45.03 2.29
263 264 6.480320 GGTCCACACTTATCATTGTGAGATAC 59.520 42.308 3.30 0.00 45.03 2.24
264 265 6.408092 GGGTCCACACTTATCATTGTGAGATA 60.408 42.308 3.30 0.00 45.03 1.98
265 266 5.431765 GGTCCACACTTATCATTGTGAGAT 58.568 41.667 3.30 0.00 45.03 2.75
266 267 4.323485 GGGTCCACACTTATCATTGTGAGA 60.323 45.833 3.30 0.00 45.03 3.27
267 268 3.941483 GGGTCCACACTTATCATTGTGAG 59.059 47.826 3.30 0.00 45.03 3.51
268 269 3.308117 GGGGTCCACACTTATCATTGTGA 60.308 47.826 3.30 0.00 45.03 3.58
269 270 3.016736 GGGGTCCACACTTATCATTGTG 58.983 50.000 0.00 0.00 42.40 3.33
270 271 2.647299 TGGGGTCCACACTTATCATTGT 59.353 45.455 0.00 0.00 0.00 2.71
271 272 3.364460 TGGGGTCCACACTTATCATTG 57.636 47.619 0.00 0.00 0.00 2.82
283 284 0.764890 CTCTTGACAAGTGGGGTCCA 59.235 55.000 14.75 0.00 34.36 4.02
284 285 0.765510 ACTCTTGACAAGTGGGGTCC 59.234 55.000 18.71 0.00 34.36 4.46
285 286 3.665190 CTTACTCTTGACAAGTGGGGTC 58.335 50.000 18.71 0.00 35.83 4.46
286 287 2.224548 GCTTACTCTTGACAAGTGGGGT 60.225 50.000 18.71 13.51 0.00 4.95
287 288 2.224523 TGCTTACTCTTGACAAGTGGGG 60.225 50.000 18.71 10.49 0.00 4.96
288 289 3.126001 TGCTTACTCTTGACAAGTGGG 57.874 47.619 18.71 11.38 0.00 4.61
289 290 3.058639 GCTTGCTTACTCTTGACAAGTGG 60.059 47.826 18.71 13.39 39.86 4.00
290 291 3.363378 CGCTTGCTTACTCTTGACAAGTG 60.363 47.826 14.75 14.47 40.97 3.16
291 292 2.802816 CGCTTGCTTACTCTTGACAAGT 59.197 45.455 14.75 0.00 39.86 3.16
292 293 3.059884 TCGCTTGCTTACTCTTGACAAG 58.940 45.455 9.03 9.03 40.49 3.16
293 294 3.106242 TCGCTTGCTTACTCTTGACAA 57.894 42.857 0.00 0.00 0.00 3.18
294 295 2.812358 TCGCTTGCTTACTCTTGACA 57.188 45.000 0.00 0.00 0.00 3.58
295 296 5.779806 TTATTCGCTTGCTTACTCTTGAC 57.220 39.130 0.00 0.00 0.00 3.18
296 297 6.985188 AATTATTCGCTTGCTTACTCTTGA 57.015 33.333 0.00 0.00 0.00 3.02
297 298 9.214953 CTAAAATTATTCGCTTGCTTACTCTTG 57.785 33.333 0.00 0.00 0.00 3.02
298 299 9.162764 TCTAAAATTATTCGCTTGCTTACTCTT 57.837 29.630 0.00 0.00 0.00 2.85
299 300 8.718102 TCTAAAATTATTCGCTTGCTTACTCT 57.282 30.769 0.00 0.00 0.00 3.24
300 301 8.818057 TCTCTAAAATTATTCGCTTGCTTACTC 58.182 33.333 0.00 0.00 0.00 2.59
301 302 8.718102 TCTCTAAAATTATTCGCTTGCTTACT 57.282 30.769 0.00 0.00 0.00 2.24
302 303 9.769093 TTTCTCTAAAATTATTCGCTTGCTTAC 57.231 29.630 0.00 0.00 0.00 2.34
304 305 9.691362 TTTTTCTCTAAAATTATTCGCTTGCTT 57.309 25.926 0.00 0.00 34.62 3.91
305 306 9.860898 ATTTTTCTCTAAAATTATTCGCTTGCT 57.139 25.926 0.00 0.00 42.40 3.91
320 321 8.726988 CCCAACATCGTTCTTATTTTTCTCTAA 58.273 33.333 0.00 0.00 0.00 2.10
321 322 8.098286 TCCCAACATCGTTCTTATTTTTCTCTA 58.902 33.333 0.00 0.00 0.00 2.43
322 323 6.940298 TCCCAACATCGTTCTTATTTTTCTCT 59.060 34.615 0.00 0.00 0.00 3.10
323 324 7.141100 TCCCAACATCGTTCTTATTTTTCTC 57.859 36.000 0.00 0.00 0.00 2.87
324 325 7.393234 TGATCCCAACATCGTTCTTATTTTTCT 59.607 33.333 0.00 0.00 0.00 2.52
325 326 7.535139 TGATCCCAACATCGTTCTTATTTTTC 58.465 34.615 0.00 0.00 0.00 2.29
326 327 7.461182 TGATCCCAACATCGTTCTTATTTTT 57.539 32.000 0.00 0.00 0.00 1.94
327 328 7.176690 ACTTGATCCCAACATCGTTCTTATTTT 59.823 33.333 0.00 0.00 0.00 1.82
328 329 6.659242 ACTTGATCCCAACATCGTTCTTATTT 59.341 34.615 0.00 0.00 0.00 1.40
329 330 6.094048 CACTTGATCCCAACATCGTTCTTATT 59.906 38.462 0.00 0.00 0.00 1.40
330 331 5.586243 CACTTGATCCCAACATCGTTCTTAT 59.414 40.000 0.00 0.00 0.00 1.73
331 332 4.935205 CACTTGATCCCAACATCGTTCTTA 59.065 41.667 0.00 0.00 0.00 2.10
332 333 3.753272 CACTTGATCCCAACATCGTTCTT 59.247 43.478 0.00 0.00 0.00 2.52
333 334 3.338249 CACTTGATCCCAACATCGTTCT 58.662 45.455 0.00 0.00 0.00 3.01
334 335 2.420022 CCACTTGATCCCAACATCGTTC 59.580 50.000 0.00 0.00 0.00 3.95
335 336 2.436417 CCACTTGATCCCAACATCGTT 58.564 47.619 0.00 0.00 0.00 3.85
336 337 1.340017 CCCACTTGATCCCAACATCGT 60.340 52.381 0.00 0.00 0.00 3.73
337 338 1.065491 TCCCACTTGATCCCAACATCG 60.065 52.381 0.00 0.00 0.00 3.84
338 339 2.025887 AGTCCCACTTGATCCCAACATC 60.026 50.000 0.00 0.00 0.00 3.06
339 340 1.995542 AGTCCCACTTGATCCCAACAT 59.004 47.619 0.00 0.00 0.00 2.71
340 341 1.351017 GAGTCCCACTTGATCCCAACA 59.649 52.381 0.00 0.00 0.00 3.33
341 342 1.351017 TGAGTCCCACTTGATCCCAAC 59.649 52.381 0.00 0.00 0.00 3.77
342 343 1.351017 GTGAGTCCCACTTGATCCCAA 59.649 52.381 0.00 0.00 42.44 4.12
343 344 0.984230 GTGAGTCCCACTTGATCCCA 59.016 55.000 0.00 0.00 42.44 4.37
344 345 0.984230 TGTGAGTCCCACTTGATCCC 59.016 55.000 0.00 0.00 45.86 3.85
345 346 1.625818 AGTGTGAGTCCCACTTGATCC 59.374 52.381 1.99 0.00 45.86 3.36
351 352 2.026262 ACAACAAAGTGTGAGTCCCACT 60.026 45.455 1.99 1.99 45.86 4.00
352 353 2.365582 ACAACAAAGTGTGAGTCCCAC 58.634 47.619 0.00 0.00 45.88 4.61
353 354 2.799126 ACAACAAAGTGTGAGTCCCA 57.201 45.000 0.00 0.00 0.00 4.37
354 355 3.560068 CACTACAACAAAGTGTGAGTCCC 59.440 47.826 0.00 0.00 39.61 4.46
355 356 4.439057 TCACTACAACAAAGTGTGAGTCC 58.561 43.478 3.40 0.00 43.88 3.85
356 357 5.643339 CTCACTACAACAAAGTGTGAGTC 57.357 43.478 11.78 0.00 45.38 3.36
359 360 7.284919 TCTATCTCACTACAACAAAGTGTGA 57.715 36.000 9.58 9.58 45.93 3.58
360 361 7.116948 CCTTCTATCTCACTACAACAAAGTGTG 59.883 40.741 3.40 1.71 43.88 3.82
361 362 7.015292 TCCTTCTATCTCACTACAACAAAGTGT 59.985 37.037 3.40 0.00 43.88 3.55
362 363 7.378966 TCCTTCTATCTCACTACAACAAAGTG 58.621 38.462 0.00 0.00 44.66 3.16
363 364 7.451877 TCTCCTTCTATCTCACTACAACAAAGT 59.548 37.037 0.00 0.00 0.00 2.66
364 365 7.831753 TCTCCTTCTATCTCACTACAACAAAG 58.168 38.462 0.00 0.00 0.00 2.77
365 366 7.577807 GCTCTCCTTCTATCTCACTACAACAAA 60.578 40.741 0.00 0.00 0.00 2.83
366 367 6.127591 GCTCTCCTTCTATCTCACTACAACAA 60.128 42.308 0.00 0.00 0.00 2.83
367 368 5.358442 GCTCTCCTTCTATCTCACTACAACA 59.642 44.000 0.00 0.00 0.00 3.33
368 369 5.592688 AGCTCTCCTTCTATCTCACTACAAC 59.407 44.000 0.00 0.00 0.00 3.32
369 370 5.592282 CAGCTCTCCTTCTATCTCACTACAA 59.408 44.000 0.00 0.00 0.00 2.41
370 371 5.129634 CAGCTCTCCTTCTATCTCACTACA 58.870 45.833 0.00 0.00 0.00 2.74
371 372 4.518970 CCAGCTCTCCTTCTATCTCACTAC 59.481 50.000 0.00 0.00 0.00 2.73
372 373 4.724399 CCAGCTCTCCTTCTATCTCACTA 58.276 47.826 0.00 0.00 0.00 2.74
373 374 3.565307 CCAGCTCTCCTTCTATCTCACT 58.435 50.000 0.00 0.00 0.00 3.41
374 375 2.035832 GCCAGCTCTCCTTCTATCTCAC 59.964 54.545 0.00 0.00 0.00 3.51
375 376 2.315176 GCCAGCTCTCCTTCTATCTCA 58.685 52.381 0.00 0.00 0.00 3.27
376 377 2.315176 TGCCAGCTCTCCTTCTATCTC 58.685 52.381 0.00 0.00 0.00 2.75
377 378 2.468301 TGCCAGCTCTCCTTCTATCT 57.532 50.000 0.00 0.00 0.00 1.98
378 379 2.289569 CCATGCCAGCTCTCCTTCTATC 60.290 54.545 0.00 0.00 0.00 2.08
379 380 1.698532 CCATGCCAGCTCTCCTTCTAT 59.301 52.381 0.00 0.00 0.00 1.98
380 381 1.126488 CCATGCCAGCTCTCCTTCTA 58.874 55.000 0.00 0.00 0.00 2.10
381 382 0.913451 ACCATGCCAGCTCTCCTTCT 60.913 55.000 0.00 0.00 0.00 2.85
382 383 0.463474 GACCATGCCAGCTCTCCTTC 60.463 60.000 0.00 0.00 0.00 3.46
383 384 0.913451 AGACCATGCCAGCTCTCCTT 60.913 55.000 0.00 0.00 0.00 3.36
384 385 1.306825 AGACCATGCCAGCTCTCCT 60.307 57.895 0.00 0.00 0.00 3.69
385 386 1.153208 CAGACCATGCCAGCTCTCC 60.153 63.158 0.00 0.00 0.00 3.71
386 387 0.826715 TACAGACCATGCCAGCTCTC 59.173 55.000 0.00 0.00 0.00 3.20
387 388 0.829333 CTACAGACCATGCCAGCTCT 59.171 55.000 0.00 0.00 0.00 4.09
388 389 0.179062 CCTACAGACCATGCCAGCTC 60.179 60.000 0.00 0.00 0.00 4.09
389 390 0.911525 ACCTACAGACCATGCCAGCT 60.912 55.000 0.00 0.00 0.00 4.24
390 391 0.830648 TACCTACAGACCATGCCAGC 59.169 55.000 0.00 0.00 0.00 4.85
391 392 3.845781 AATACCTACAGACCATGCCAG 57.154 47.619 0.00 0.00 0.00 4.85
392 393 4.269183 CAAAATACCTACAGACCATGCCA 58.731 43.478 0.00 0.00 0.00 4.92
393 394 3.632145 CCAAAATACCTACAGACCATGCC 59.368 47.826 0.00 0.00 0.00 4.40
394 395 4.270008 ACCAAAATACCTACAGACCATGC 58.730 43.478 0.00 0.00 0.00 4.06
395 396 5.496556 TGACCAAAATACCTACAGACCATG 58.503 41.667 0.00 0.00 0.00 3.66
396 397 5.772393 TGACCAAAATACCTACAGACCAT 57.228 39.130 0.00 0.00 0.00 3.55
397 398 5.772393 ATGACCAAAATACCTACAGACCA 57.228 39.130 0.00 0.00 0.00 4.02
398 399 9.841295 TTATAATGACCAAAATACCTACAGACC 57.159 33.333 0.00 0.00 0.00 3.85
404 405 9.073475 GCCATGTTATAATGACCAAAATACCTA 57.927 33.333 0.00 0.00 0.00 3.08
405 406 7.563188 TGCCATGTTATAATGACCAAAATACCT 59.437 33.333 0.00 0.00 0.00 3.08
406 407 7.721402 TGCCATGTTATAATGACCAAAATACC 58.279 34.615 0.00 0.00 0.00 2.73
407 408 9.593134 TTTGCCATGTTATAATGACCAAAATAC 57.407 29.630 0.00 0.00 31.59 1.89
408 409 9.593134 GTTTGCCATGTTATAATGACCAAAATA 57.407 29.630 0.00 0.00 33.97 1.40
409 410 7.277539 CGTTTGCCATGTTATAATGACCAAAAT 59.722 33.333 0.00 0.00 33.97 1.82
410 411 6.587990 CGTTTGCCATGTTATAATGACCAAAA 59.412 34.615 0.00 0.00 33.97 2.44
411 412 6.071896 TCGTTTGCCATGTTATAATGACCAAA 60.072 34.615 0.00 0.00 31.83 3.28
412 413 5.416013 TCGTTTGCCATGTTATAATGACCAA 59.584 36.000 0.00 0.00 0.00 3.67
413 414 4.944317 TCGTTTGCCATGTTATAATGACCA 59.056 37.500 0.00 0.00 0.00 4.02
414 415 5.295787 TCTCGTTTGCCATGTTATAATGACC 59.704 40.000 0.00 0.00 0.00 4.02
415 416 6.358118 TCTCGTTTGCCATGTTATAATGAC 57.642 37.500 0.00 0.00 0.00 3.06
416 417 7.566760 AATCTCGTTTGCCATGTTATAATGA 57.433 32.000 0.00 0.00 0.00 2.57
417 418 7.914871 TCAAATCTCGTTTGCCATGTTATAATG 59.085 33.333 0.00 0.00 45.45 1.90
418 419 7.995289 TCAAATCTCGTTTGCCATGTTATAAT 58.005 30.769 0.00 0.00 45.45 1.28
419 420 7.384439 TCAAATCTCGTTTGCCATGTTATAA 57.616 32.000 0.00 0.00 45.45 0.98
420 421 6.458206 GCTCAAATCTCGTTTGCCATGTTATA 60.458 38.462 0.00 0.00 45.45 0.98
421 422 5.677091 GCTCAAATCTCGTTTGCCATGTTAT 60.677 40.000 0.00 0.00 45.45 1.89
422 423 4.379394 GCTCAAATCTCGTTTGCCATGTTA 60.379 41.667 0.00 0.00 45.45 2.41
423 424 3.612479 GCTCAAATCTCGTTTGCCATGTT 60.612 43.478 0.00 0.00 45.45 2.71
424 425 2.095059 GCTCAAATCTCGTTTGCCATGT 60.095 45.455 0.00 0.00 45.45 3.21
425 426 2.163010 AGCTCAAATCTCGTTTGCCATG 59.837 45.455 0.00 0.00 45.45 3.66
426 427 2.421424 GAGCTCAAATCTCGTTTGCCAT 59.579 45.455 9.40 0.00 45.45 4.40
427 428 1.806542 GAGCTCAAATCTCGTTTGCCA 59.193 47.619 9.40 0.00 45.45 4.92
428 429 1.806542 TGAGCTCAAATCTCGTTTGCC 59.193 47.619 15.67 0.00 45.45 4.52
429 430 2.224079 TGTGAGCTCAAATCTCGTTTGC 59.776 45.455 20.19 1.49 45.45 3.68
430 431 3.496130 ACTGTGAGCTCAAATCTCGTTTG 59.504 43.478 20.19 0.54 46.86 2.93
431 432 3.733337 ACTGTGAGCTCAAATCTCGTTT 58.267 40.909 20.19 0.00 33.41 3.60
432 433 3.393089 ACTGTGAGCTCAAATCTCGTT 57.607 42.857 20.19 0.00 33.41 3.85
433 434 4.521130 TTACTGTGAGCTCAAATCTCGT 57.479 40.909 20.19 9.87 33.41 4.18
434 435 5.105063 TCATTACTGTGAGCTCAAATCTCG 58.895 41.667 20.19 3.39 33.41 4.04
435 436 6.538021 ACATCATTACTGTGAGCTCAAATCTC 59.462 38.462 20.19 6.12 0.00 2.75
436 437 6.413052 ACATCATTACTGTGAGCTCAAATCT 58.587 36.000 20.19 3.61 0.00 2.40
437 438 6.238320 GGACATCATTACTGTGAGCTCAAATC 60.238 42.308 20.19 6.95 0.00 2.17
438 439 5.587844 GGACATCATTACTGTGAGCTCAAAT 59.412 40.000 20.19 11.80 0.00 2.32
439 440 4.937620 GGACATCATTACTGTGAGCTCAAA 59.062 41.667 20.19 13.15 0.00 2.69
440 441 4.020307 TGGACATCATTACTGTGAGCTCAA 60.020 41.667 20.19 2.01 0.00 3.02
441 442 3.515104 TGGACATCATTACTGTGAGCTCA 59.485 43.478 13.74 13.74 0.00 4.26
442 443 4.118410 CTGGACATCATTACTGTGAGCTC 58.882 47.826 6.82 6.82 0.00 4.09
443 444 3.517100 ACTGGACATCATTACTGTGAGCT 59.483 43.478 0.00 0.00 0.00 4.09
444 445 3.620374 CACTGGACATCATTACTGTGAGC 59.380 47.826 0.00 0.00 35.60 4.26
445 446 4.186926 CCACTGGACATCATTACTGTGAG 58.813 47.826 0.00 0.00 35.60 3.51
446 447 3.619733 GCCACTGGACATCATTACTGTGA 60.620 47.826 0.00 0.00 35.60 3.58
447 448 2.679837 GCCACTGGACATCATTACTGTG 59.320 50.000 0.00 0.00 34.05 3.66
448 449 2.305635 TGCCACTGGACATCATTACTGT 59.694 45.455 0.00 0.00 0.00 3.55
449 450 2.989909 TGCCACTGGACATCATTACTG 58.010 47.619 0.00 0.00 0.00 2.74
450 451 3.939740 ATGCCACTGGACATCATTACT 57.060 42.857 0.00 0.00 0.00 2.24
451 452 4.989279 AAATGCCACTGGACATCATTAC 57.011 40.909 0.00 0.00 0.00 1.89
452 453 5.479724 TCAAAAATGCCACTGGACATCATTA 59.520 36.000 0.00 0.00 0.00 1.90
453 454 4.283978 TCAAAAATGCCACTGGACATCATT 59.716 37.500 0.00 0.00 0.00 2.57
454 455 3.833650 TCAAAAATGCCACTGGACATCAT 59.166 39.130 0.00 0.00 0.00 2.45
455 456 3.229293 TCAAAAATGCCACTGGACATCA 58.771 40.909 0.00 0.00 0.00 3.07
456 457 3.841643 CTCAAAAATGCCACTGGACATC 58.158 45.455 0.00 0.00 0.00 3.06
457 458 2.028748 GCTCAAAAATGCCACTGGACAT 60.029 45.455 0.00 0.00 0.00 3.06
458 459 1.340889 GCTCAAAAATGCCACTGGACA 59.659 47.619 0.00 0.00 0.00 4.02
459 460 1.340889 TGCTCAAAAATGCCACTGGAC 59.659 47.619 0.00 0.00 0.00 4.02
460 461 1.702182 TGCTCAAAAATGCCACTGGA 58.298 45.000 0.00 0.00 0.00 3.86
461 462 2.343101 CATGCTCAAAAATGCCACTGG 58.657 47.619 0.00 0.00 0.00 4.00
462 463 1.730064 GCATGCTCAAAAATGCCACTG 59.270 47.619 11.37 0.00 42.73 3.66
463 464 2.088950 GCATGCTCAAAAATGCCACT 57.911 45.000 11.37 0.00 42.73 4.00
468 469 3.991605 GCTCAAGCATGCTCAAAAATG 57.008 42.857 22.93 14.59 41.59 2.32
481 482 5.855395 CACTAAGAATTTCAACTGCTCAAGC 59.145 40.000 0.00 0.00 42.50 4.01
482 483 6.376978 CCACTAAGAATTTCAACTGCTCAAG 58.623 40.000 0.00 0.00 0.00 3.02
483 484 5.278463 GCCACTAAGAATTTCAACTGCTCAA 60.278 40.000 0.00 0.00 0.00 3.02
484 485 4.216257 GCCACTAAGAATTTCAACTGCTCA 59.784 41.667 0.00 0.00 0.00 4.26
485 486 4.216257 TGCCACTAAGAATTTCAACTGCTC 59.784 41.667 0.00 0.00 0.00 4.26
486 487 4.144297 TGCCACTAAGAATTTCAACTGCT 58.856 39.130 0.00 0.00 0.00 4.24
487 488 4.503741 TGCCACTAAGAATTTCAACTGC 57.496 40.909 0.00 0.00 0.00 4.40
488 489 6.980397 AGTTTTGCCACTAAGAATTTCAACTG 59.020 34.615 0.00 0.00 0.00 3.16
489 490 7.112452 AGTTTTGCCACTAAGAATTTCAACT 57.888 32.000 0.00 0.00 0.00 3.16
490 491 6.978080 TGAGTTTTGCCACTAAGAATTTCAAC 59.022 34.615 0.00 0.00 0.00 3.18
491 492 7.106439 TGAGTTTTGCCACTAAGAATTTCAA 57.894 32.000 0.00 0.00 0.00 2.69
492 493 6.321181 ACTGAGTTTTGCCACTAAGAATTTCA 59.679 34.615 0.00 0.00 30.35 2.69
493 494 6.739112 ACTGAGTTTTGCCACTAAGAATTTC 58.261 36.000 0.19 0.00 30.35 2.17
494 495 6.715347 ACTGAGTTTTGCCACTAAGAATTT 57.285 33.333 0.19 0.00 30.35 1.82
495 496 6.998673 ACTACTGAGTTTTGCCACTAAGAATT 59.001 34.615 0.00 0.00 30.35 2.17
496 497 6.428159 CACTACTGAGTTTTGCCACTAAGAAT 59.572 38.462 0.00 0.00 31.73 2.40
497 498 5.758296 CACTACTGAGTTTTGCCACTAAGAA 59.242 40.000 0.00 0.00 31.73 2.52
498 499 5.069914 TCACTACTGAGTTTTGCCACTAAGA 59.930 40.000 0.00 0.00 31.73 2.10
499 500 5.297547 TCACTACTGAGTTTTGCCACTAAG 58.702 41.667 0.00 0.00 31.73 2.18
500 501 5.069914 TCTCACTACTGAGTTTTGCCACTAA 59.930 40.000 0.00 0.00 44.07 2.24
501 502 4.587262 TCTCACTACTGAGTTTTGCCACTA 59.413 41.667 0.00 0.00 44.07 2.74
502 503 3.388024 TCTCACTACTGAGTTTTGCCACT 59.612 43.478 0.00 0.00 44.07 4.00
503 504 3.495001 GTCTCACTACTGAGTTTTGCCAC 59.505 47.826 0.00 0.00 44.07 5.01
504 505 3.133901 TGTCTCACTACTGAGTTTTGCCA 59.866 43.478 0.00 0.00 44.07 4.92
505 506 3.495001 GTGTCTCACTACTGAGTTTTGCC 59.505 47.826 0.00 0.00 44.07 4.52
506 507 4.119862 TGTGTCTCACTACTGAGTTTTGC 58.880 43.478 0.00 0.00 44.07 3.68
507 508 5.006746 GGTTGTGTCTCACTACTGAGTTTTG 59.993 44.000 12.27 0.00 44.07 2.44
508 509 5.116882 GGTTGTGTCTCACTACTGAGTTTT 58.883 41.667 12.27 0.00 44.07 2.43
509 510 4.161565 TGGTTGTGTCTCACTACTGAGTTT 59.838 41.667 12.27 0.00 44.07 2.66
510 511 3.704566 TGGTTGTGTCTCACTACTGAGTT 59.295 43.478 12.27 0.00 44.07 3.01
511 512 3.296854 TGGTTGTGTCTCACTACTGAGT 58.703 45.455 12.27 0.00 44.07 3.41
512 513 4.322080 TTGGTTGTGTCTCACTACTGAG 57.678 45.455 12.27 0.00 44.94 3.35
513 514 4.955811 ATTGGTTGTGTCTCACTACTGA 57.044 40.909 12.27 4.53 39.34 3.41
514 515 5.989168 TGTTATTGGTTGTGTCTCACTACTG 59.011 40.000 12.27 0.00 39.34 2.74
515 516 6.169557 TGTTATTGGTTGTGTCTCACTACT 57.830 37.500 12.27 0.00 39.34 2.57
516 517 8.542497 TTATGTTATTGGTTGTGTCTCACTAC 57.458 34.615 6.06 6.06 38.84 2.73
517 518 9.733556 ATTTATGTTATTGGTTGTGTCTCACTA 57.266 29.630 1.72 0.00 35.11 2.74
518 519 8.514594 CATTTATGTTATTGGTTGTGTCTCACT 58.485 33.333 1.72 0.00 35.11 3.41
519 520 8.511321 TCATTTATGTTATTGGTTGTGTCTCAC 58.489 33.333 0.00 0.00 34.56 3.51
520 521 8.628630 TCATTTATGTTATTGGTTGTGTCTCA 57.371 30.769 0.00 0.00 0.00 3.27
561 562 7.715249 GGGTCTGGCTTATTTTCTTTTCTTTTT 59.285 33.333 0.00 0.00 0.00 1.94
562 563 7.071196 AGGGTCTGGCTTATTTTCTTTTCTTTT 59.929 33.333 0.00 0.00 0.00 2.27
563 564 6.554982 AGGGTCTGGCTTATTTTCTTTTCTTT 59.445 34.615 0.00 0.00 0.00 2.52
564 565 6.077993 AGGGTCTGGCTTATTTTCTTTTCTT 58.922 36.000 0.00 0.00 0.00 2.52
565 566 5.645201 AGGGTCTGGCTTATTTTCTTTTCT 58.355 37.500 0.00 0.00 0.00 2.52
566 567 5.984695 AGGGTCTGGCTTATTTTCTTTTC 57.015 39.130 0.00 0.00 0.00 2.29
567 568 6.747414 AAAGGGTCTGGCTTATTTTCTTTT 57.253 33.333 0.00 0.00 0.00 2.27
568 569 6.071334 GCTAAAGGGTCTGGCTTATTTTCTTT 60.071 38.462 0.00 0.00 0.00 2.52
569 570 5.419155 GCTAAAGGGTCTGGCTTATTTTCTT 59.581 40.000 0.00 0.00 0.00 2.52
570 571 4.950475 GCTAAAGGGTCTGGCTTATTTTCT 59.050 41.667 0.00 0.00 0.00 2.52
571 572 4.705023 TGCTAAAGGGTCTGGCTTATTTTC 59.295 41.667 0.00 0.00 0.00 2.29
572 573 4.672899 TGCTAAAGGGTCTGGCTTATTTT 58.327 39.130 0.00 0.00 0.00 1.82
573 574 4.316025 TGCTAAAGGGTCTGGCTTATTT 57.684 40.909 0.00 0.00 0.00 1.40
574 575 4.526438 ATGCTAAAGGGTCTGGCTTATT 57.474 40.909 0.00 0.00 0.00 1.40
575 576 4.526438 AATGCTAAAGGGTCTGGCTTAT 57.474 40.909 0.00 0.00 0.00 1.73
576 577 4.016444 CAAATGCTAAAGGGTCTGGCTTA 58.984 43.478 0.00 0.00 0.00 3.09
577 578 2.827921 CAAATGCTAAAGGGTCTGGCTT 59.172 45.455 0.00 0.00 0.00 4.35
578 579 2.450476 CAAATGCTAAAGGGTCTGGCT 58.550 47.619 0.00 0.00 0.00 4.75
579 580 1.134995 GCAAATGCTAAAGGGTCTGGC 60.135 52.381 0.00 0.00 38.21 4.85
580 581 1.133025 CGCAAATGCTAAAGGGTCTGG 59.867 52.381 3.63 0.00 39.32 3.86
581 582 1.468054 GCGCAAATGCTAAAGGGTCTG 60.468 52.381 0.30 0.00 39.32 3.51
582 583 0.811281 GCGCAAATGCTAAAGGGTCT 59.189 50.000 0.30 0.00 39.32 3.85
583 584 0.523335 CGCGCAAATGCTAAAGGGTC 60.523 55.000 8.75 0.00 39.32 4.46
584 585 1.241315 ACGCGCAAATGCTAAAGGGT 61.241 50.000 5.73 0.00 39.32 4.34
585 586 0.798009 CACGCGCAAATGCTAAAGGG 60.798 55.000 5.73 0.00 39.32 3.95
586 587 0.109781 ACACGCGCAAATGCTAAAGG 60.110 50.000 5.73 0.00 39.32 3.11
587 588 0.976963 CACACGCGCAAATGCTAAAG 59.023 50.000 5.73 0.00 39.32 1.85
647 650 2.435586 CCAGCTCGTTGGGCAGAG 60.436 66.667 0.00 0.00 37.54 3.35
775 778 1.141185 GATTCTTGGGGTAGGGGGAG 58.859 60.000 0.00 0.00 0.00 4.30
799 802 1.706287 GGAAGTGGGAGCGCGATTTC 61.706 60.000 12.10 3.20 0.00 2.17
822 825 1.075896 AACTAGGCGAGGGAGGGAG 60.076 63.158 0.00 0.00 0.00 4.30
823 826 1.381327 CAACTAGGCGAGGGAGGGA 60.381 63.158 0.00 0.00 0.00 4.20
824 827 1.381327 TCAACTAGGCGAGGGAGGG 60.381 63.158 0.00 0.00 0.00 4.30
825 828 0.684805 AGTCAACTAGGCGAGGGAGG 60.685 60.000 0.00 0.00 0.00 4.30
902 907 2.523507 CGGAGAAGATGCGCTGCAG 61.524 63.158 10.11 10.11 43.65 4.41
909 916 2.109126 GGCACACCGGAGAAGATGC 61.109 63.158 9.46 5.99 0.00 3.91
947 954 1.957177 AGAGTTCAGCTGACGTCAAGA 59.043 47.619 18.03 14.50 0.00 3.02
950 957 0.319040 GCAGAGTTCAGCTGACGTCA 60.319 55.000 18.03 18.88 35.39 4.35
1410 1438 1.444553 CTTCAGGTGCGACGAGACC 60.445 63.158 0.00 3.42 0.00 3.85
1500 1528 3.879892 GGATGTTACAGCCTTTCATCTCC 59.120 47.826 12.89 0.00 36.92 3.71
1548 1576 2.614057 CCCTTTGATGGTAAGATGTCGC 59.386 50.000 0.00 0.00 0.00 5.19
1838 1877 7.889589 ACAGCAATTAGGAATTAGCAAAAAC 57.110 32.000 0.00 0.00 31.65 2.43
1854 1985 4.380233 GCTAGCAGATGACAAACAGCAATT 60.380 41.667 10.63 0.00 37.37 2.32
1944 2080 3.219052 TGTGAAACGGTGAAAACAACC 57.781 42.857 0.00 0.00 42.39 3.77
2839 3326 4.539509 TGGTGCAACAAAAACTAGTACG 57.460 40.909 0.00 0.00 39.98 3.67
2849 3336 3.068873 GGGTGTAGAAATGGTGCAACAAA 59.931 43.478 9.38 0.00 39.98 2.83
3224 3719 6.769822 AGATTATTCACTGATTGGATGGTCAC 59.230 38.462 0.00 0.00 0.00 3.67
3262 3765 0.826715 GCAGTAGACAGATGCAGGGA 59.173 55.000 0.00 0.00 39.75 4.20
3578 4081 2.159282 CCTGAAACATCATCTTGGCAGC 60.159 50.000 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.