Multiple sequence alignment - TraesCS6D01G359900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G359900 chr6D 100.000 6443 0 0 1 6443 451901329 451894887 0.000000e+00 11899.0
1 TraesCS6D01G359900 chr6B 91.207 4458 227 77 86 4431 686371024 686366620 0.000000e+00 5908.0
2 TraesCS6D01G359900 chr6B 94.691 1375 41 13 4463 5813 686366624 686365258 0.000000e+00 2106.0
3 TraesCS6D01G359900 chr6B 94.318 528 29 1 5917 6443 686365122 686364595 0.000000e+00 808.0
4 TraesCS6D01G359900 chr6B 88.889 99 8 2 5207 5302 686365838 686365740 1.130000e-22 119.0
5 TraesCS6D01G359900 chr6B 98.000 50 1 0 5240 5289 686365871 686365822 3.200000e-13 87.9
6 TraesCS6D01G359900 chr6A 90.851 4383 192 85 123 4379 597795640 597791341 0.000000e+00 5679.0
7 TraesCS6D01G359900 chr6A 93.453 2001 77 22 4463 6443 597791215 597789249 0.000000e+00 2920.0
8 TraesCS6D01G359900 chr6A 94.737 133 7 0 4299 4431 597791343 597791211 2.350000e-49 207.0
9 TraesCS6D01G359900 chr6A 93.827 81 5 0 4299 4379 597791382 597791302 8.770000e-24 122.0
10 TraesCS6D01G359900 chr6A 94.667 75 4 0 5207 5281 597790437 597790363 4.080000e-22 117.0
11 TraesCS6D01G359900 chrUn 100.000 390 0 0 2654 3043 479996814 479997203 0.000000e+00 721.0
12 TraesCS6D01G359900 chrUn 77.973 513 100 5 5942 6443 15346872 15346362 6.270000e-80 309.0
13 TraesCS6D01G359900 chrUn 77.885 520 100 7 5936 6443 272742788 272743304 6.270000e-80 309.0
14 TraesCS6D01G359900 chr7B 85.821 536 75 1 5908 6443 679361014 679360480 9.370000e-158 568.0
15 TraesCS6D01G359900 chr2A 83.202 506 84 1 5939 6443 723626656 723626151 4.550000e-126 462.0
16 TraesCS6D01G359900 chr2B 81.942 515 80 12 5936 6443 713939016 713939524 2.150000e-114 424.0
17 TraesCS6D01G359900 chr4B 76.036 676 81 48 357 979 160225206 160224559 6.360000e-70 276.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G359900 chr6D 451894887 451901329 6442 True 11899.00 11899 100.000 1 6443 1 chr6D.!!$R1 6442
1 TraesCS6D01G359900 chr6B 686364595 686371024 6429 True 1805.78 5908 93.421 86 6443 5 chr6B.!!$R1 6357
2 TraesCS6D01G359900 chr6A 597789249 597795640 6391 True 1809.00 5679 93.507 123 6443 5 chr6A.!!$R1 6320
3 TraesCS6D01G359900 chrUn 15346362 15346872 510 True 309.00 309 77.973 5942 6443 1 chrUn.!!$R1 501
4 TraesCS6D01G359900 chrUn 272742788 272743304 516 False 309.00 309 77.885 5936 6443 1 chrUn.!!$F1 507
5 TraesCS6D01G359900 chr7B 679360480 679361014 534 True 568.00 568 85.821 5908 6443 1 chr7B.!!$R1 535
6 TraesCS6D01G359900 chr2A 723626151 723626656 505 True 462.00 462 83.202 5939 6443 1 chr2A.!!$R1 504
7 TraesCS6D01G359900 chr2B 713939016 713939524 508 False 424.00 424 81.942 5936 6443 1 chr2B.!!$F1 507
8 TraesCS6D01G359900 chr4B 160224559 160225206 647 True 276.00 276 76.036 357 979 1 chr4B.!!$R1 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.107410 AGTTCCACTTCCACGCACAA 60.107 50.0 0.00 0.0 0.00 3.33 F
1060 1176 0.179034 GACCTCCATGCCATCTGTCC 60.179 60.0 0.00 0.0 0.00 4.02 F
1138 1255 0.606401 TTTCTCCTTGCAGGAAGCGG 60.606 55.0 0.00 0.0 45.28 5.52 F
2461 2596 0.814010 CATCCCGGTCCGTTTCATCC 60.814 60.0 11.06 0.0 0.00 3.51 F
3426 3566 0.249322 CGACTGACGTCCCAAGTGTT 60.249 55.0 14.12 0.0 36.82 3.32 F
4326 4584 0.032813 ATCATTTGCTCCCCCACAGG 60.033 55.0 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 2015 0.329261 AGCTAGTGCCTGCAATTCCA 59.671 50.000 0.00 0.0 40.80 3.53 R
3043 3178 2.034879 CATTCGGTTCAGCAGGCGT 61.035 57.895 0.00 0.0 0.00 5.68 R
3151 3287 6.868339 AGAACAAAAATCCTTGCTATTTTCCG 59.132 34.615 0.00 0.0 35.91 4.30 R
4190 4340 0.183731 CCTGGGAGGGAACATAAGCC 59.816 60.000 0.00 0.0 0.00 4.35 R
4452 4710 0.253044 TTCTGCGAAGGAATCCCAGG 59.747 55.000 0.00 0.0 35.14 4.45 R
6227 6589 0.026027 GTCGACGACGCCTACTACAG 59.974 60.000 12.94 0.0 39.58 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.967332 CCATTCCTGCTTTGTCCATTT 57.033 42.857 0.00 0.00 0.00 2.32
21 22 3.853475 CCATTCCTGCTTTGTCCATTTC 58.147 45.455 0.00 0.00 0.00 2.17
22 23 3.368739 CCATTCCTGCTTTGTCCATTTCC 60.369 47.826 0.00 0.00 0.00 3.13
23 24 2.978156 TCCTGCTTTGTCCATTTCCT 57.022 45.000 0.00 0.00 0.00 3.36
24 25 3.243359 TCCTGCTTTGTCCATTTCCTT 57.757 42.857 0.00 0.00 0.00 3.36
25 26 3.575805 TCCTGCTTTGTCCATTTCCTTT 58.424 40.909 0.00 0.00 0.00 3.11
26 27 3.966665 TCCTGCTTTGTCCATTTCCTTTT 59.033 39.130 0.00 0.00 0.00 2.27
27 28 4.039124 TCCTGCTTTGTCCATTTCCTTTTC 59.961 41.667 0.00 0.00 0.00 2.29
28 29 4.309933 CTGCTTTGTCCATTTCCTTTTCC 58.690 43.478 0.00 0.00 0.00 3.13
29 30 3.708631 TGCTTTGTCCATTTCCTTTTCCA 59.291 39.130 0.00 0.00 0.00 3.53
30 31 4.347583 TGCTTTGTCCATTTCCTTTTCCAT 59.652 37.500 0.00 0.00 0.00 3.41
31 32 5.163216 TGCTTTGTCCATTTCCTTTTCCATT 60.163 36.000 0.00 0.00 0.00 3.16
32 33 5.764686 GCTTTGTCCATTTCCTTTTCCATTT 59.235 36.000 0.00 0.00 0.00 2.32
33 34 6.073058 GCTTTGTCCATTTCCTTTTCCATTTC 60.073 38.462 0.00 0.00 0.00 2.17
34 35 6.491714 TTGTCCATTTCCTTTTCCATTTCA 57.508 33.333 0.00 0.00 0.00 2.69
35 36 6.491714 TGTCCATTTCCTTTTCCATTTCAA 57.508 33.333 0.00 0.00 0.00 2.69
36 37 7.077050 TGTCCATTTCCTTTTCCATTTCAAT 57.923 32.000 0.00 0.00 0.00 2.57
37 38 8.200024 TGTCCATTTCCTTTTCCATTTCAATA 57.800 30.769 0.00 0.00 0.00 1.90
38 39 8.093927 TGTCCATTTCCTTTTCCATTTCAATAC 58.906 33.333 0.00 0.00 0.00 1.89
39 40 8.314021 GTCCATTTCCTTTTCCATTTCAATACT 58.686 33.333 0.00 0.00 0.00 2.12
40 41 8.531146 TCCATTTCCTTTTCCATTTCAATACTC 58.469 33.333 0.00 0.00 0.00 2.59
41 42 7.765819 CCATTTCCTTTTCCATTTCAATACTCC 59.234 37.037 0.00 0.00 0.00 3.85
42 43 7.847711 TTTCCTTTTCCATTTCAATACTCCA 57.152 32.000 0.00 0.00 0.00 3.86
43 44 7.466746 TTCCTTTTCCATTTCAATACTCCAG 57.533 36.000 0.00 0.00 0.00 3.86
44 45 5.418840 TCCTTTTCCATTTCAATACTCCAGC 59.581 40.000 0.00 0.00 0.00 4.85
45 46 5.420104 CCTTTTCCATTTCAATACTCCAGCT 59.580 40.000 0.00 0.00 0.00 4.24
46 47 6.405176 CCTTTTCCATTTCAATACTCCAGCTC 60.405 42.308 0.00 0.00 0.00 4.09
47 48 4.842531 TCCATTTCAATACTCCAGCTCA 57.157 40.909 0.00 0.00 0.00 4.26
48 49 5.378230 TCCATTTCAATACTCCAGCTCAT 57.622 39.130 0.00 0.00 0.00 2.90
49 50 5.371526 TCCATTTCAATACTCCAGCTCATC 58.628 41.667 0.00 0.00 0.00 2.92
50 51 4.518211 CCATTTCAATACTCCAGCTCATCC 59.482 45.833 0.00 0.00 0.00 3.51
51 52 5.374921 CATTTCAATACTCCAGCTCATCCT 58.625 41.667 0.00 0.00 0.00 3.24
52 53 4.679373 TTCAATACTCCAGCTCATCCTC 57.321 45.455 0.00 0.00 0.00 3.71
53 54 3.646534 TCAATACTCCAGCTCATCCTCA 58.353 45.455 0.00 0.00 0.00 3.86
54 55 3.640498 TCAATACTCCAGCTCATCCTCAG 59.360 47.826 0.00 0.00 0.00 3.35
55 56 2.836636 TACTCCAGCTCATCCTCAGT 57.163 50.000 0.00 0.00 0.00 3.41
56 57 1.949799 ACTCCAGCTCATCCTCAGTT 58.050 50.000 0.00 0.00 0.00 3.16
57 58 1.830477 ACTCCAGCTCATCCTCAGTTC 59.170 52.381 0.00 0.00 0.00 3.01
58 59 1.138661 CTCCAGCTCATCCTCAGTTCC 59.861 57.143 0.00 0.00 0.00 3.62
59 60 0.907486 CCAGCTCATCCTCAGTTCCA 59.093 55.000 0.00 0.00 0.00 3.53
60 61 1.406614 CCAGCTCATCCTCAGTTCCAC 60.407 57.143 0.00 0.00 0.00 4.02
61 62 1.554160 CAGCTCATCCTCAGTTCCACT 59.446 52.381 0.00 0.00 0.00 4.00
62 63 2.027377 CAGCTCATCCTCAGTTCCACTT 60.027 50.000 0.00 0.00 0.00 3.16
63 64 2.235898 AGCTCATCCTCAGTTCCACTTC 59.764 50.000 0.00 0.00 0.00 3.01
64 65 2.679349 GCTCATCCTCAGTTCCACTTCC 60.679 54.545 0.00 0.00 0.00 3.46
65 66 2.568956 CTCATCCTCAGTTCCACTTCCA 59.431 50.000 0.00 0.00 0.00 3.53
66 67 2.303022 TCATCCTCAGTTCCACTTCCAC 59.697 50.000 0.00 0.00 0.00 4.02
67 68 0.679505 TCCTCAGTTCCACTTCCACG 59.320 55.000 0.00 0.00 0.00 4.94
68 69 0.951040 CCTCAGTTCCACTTCCACGC 60.951 60.000 0.00 0.00 0.00 5.34
69 70 0.249868 CTCAGTTCCACTTCCACGCA 60.250 55.000 0.00 0.00 0.00 5.24
70 71 0.531974 TCAGTTCCACTTCCACGCAC 60.532 55.000 0.00 0.00 0.00 5.34
71 72 0.813610 CAGTTCCACTTCCACGCACA 60.814 55.000 0.00 0.00 0.00 4.57
72 73 0.107410 AGTTCCACTTCCACGCACAA 60.107 50.000 0.00 0.00 0.00 3.33
73 74 0.736053 GTTCCACTTCCACGCACAAA 59.264 50.000 0.00 0.00 0.00 2.83
74 75 1.133407 GTTCCACTTCCACGCACAAAA 59.867 47.619 0.00 0.00 0.00 2.44
75 76 1.464734 TCCACTTCCACGCACAAAAA 58.535 45.000 0.00 0.00 0.00 1.94
76 77 2.028130 TCCACTTCCACGCACAAAAAT 58.972 42.857 0.00 0.00 0.00 1.82
77 78 3.215151 TCCACTTCCACGCACAAAAATA 58.785 40.909 0.00 0.00 0.00 1.40
78 79 3.632604 TCCACTTCCACGCACAAAAATAA 59.367 39.130 0.00 0.00 0.00 1.40
79 80 4.098044 TCCACTTCCACGCACAAAAATAAA 59.902 37.500 0.00 0.00 0.00 1.40
80 81 4.987912 CCACTTCCACGCACAAAAATAAAT 59.012 37.500 0.00 0.00 0.00 1.40
81 82 6.016192 TCCACTTCCACGCACAAAAATAAATA 60.016 34.615 0.00 0.00 0.00 1.40
82 83 6.307800 CCACTTCCACGCACAAAAATAAATAG 59.692 38.462 0.00 0.00 0.00 1.73
83 84 7.081349 CACTTCCACGCACAAAAATAAATAGA 58.919 34.615 0.00 0.00 0.00 1.98
84 85 7.060633 CACTTCCACGCACAAAAATAAATAGAC 59.939 37.037 0.00 0.00 0.00 2.59
91 92 6.795114 CGCACAAAAATAAATAGACAACGAGT 59.205 34.615 0.00 0.00 0.00 4.18
95 96 9.769093 ACAAAAATAAATAGACAACGAGTATGC 57.231 29.630 0.00 0.00 0.00 3.14
100 101 0.736325 AGACAACGAGTATGCACCGC 60.736 55.000 0.00 0.00 0.00 5.68
102 103 0.601576 ACAACGAGTATGCACCGCAA 60.602 50.000 0.00 0.00 43.62 4.85
117 123 4.558860 GCACCGCAACAGATTAGATTTTTC 59.441 41.667 0.00 0.00 0.00 2.29
120 126 6.863126 CACCGCAACAGATTAGATTTTTCTTT 59.137 34.615 0.00 0.00 0.00 2.52
121 127 6.863126 ACCGCAACAGATTAGATTTTTCTTTG 59.137 34.615 0.00 0.00 0.00 2.77
278 299 5.858581 AGCACAAAAGAAACGAGATTATTGC 59.141 36.000 0.00 0.00 0.00 3.56
317 345 2.722487 CTACCCTCCGTAGCAGCG 59.278 66.667 0.00 0.00 38.23 5.18
383 416 4.161295 CCCCATTCCTCGCTCGCA 62.161 66.667 0.00 0.00 0.00 5.10
507 567 1.216710 CCTCCTCACTCAGGTTCGC 59.783 63.158 0.00 0.00 43.95 4.70
509 569 2.125912 CCTCACTCAGGTTCGCCG 60.126 66.667 0.00 0.00 43.66 6.46
511 571 1.444553 CTCACTCAGGTTCGCCGAC 60.445 63.158 0.00 0.00 43.66 4.79
533 593 3.854669 CGCCCCGAGCTTCTCCAT 61.855 66.667 0.00 0.00 40.39 3.41
536 596 1.745264 CCCCGAGCTTCTCCATCTC 59.255 63.158 0.00 0.00 0.00 2.75
537 597 0.758685 CCCCGAGCTTCTCCATCTCT 60.759 60.000 0.00 0.00 0.00 3.10
539 599 0.673437 CCGAGCTTCTCCATCTCTCC 59.327 60.000 0.00 0.00 0.00 3.71
554 614 3.036783 CTCCGCTGCTGCTTGCTTC 62.037 63.158 14.03 0.00 43.37 3.86
555 615 3.054503 CCGCTGCTGCTTGCTTCT 61.055 61.111 14.03 0.00 43.37 2.85
562 622 0.526662 GCTGCTTGCTTCTGATTGCT 59.473 50.000 0.00 0.00 38.95 3.91
567 627 1.132643 CTTGCTTCTGATTGCTGCTCC 59.867 52.381 0.00 0.00 0.00 4.70
569 629 0.733729 GCTTCTGATTGCTGCTCCAG 59.266 55.000 0.00 5.75 34.12 3.86
618 678 2.452064 GGGGAATGGCCGGATCTCA 61.452 63.158 5.05 0.00 37.63 3.27
619 679 1.227973 GGGAATGGCCGGATCTCAC 60.228 63.158 5.05 0.00 37.63 3.51
833 917 3.612517 GCGATGATATGCCTGTCCA 57.387 52.632 0.00 0.00 0.00 4.02
912 1010 2.883386 GGATCTCACCAGCAATGGATTC 59.117 50.000 0.31 0.00 0.00 2.52
943 1041 1.997256 TACCGAGGAGGAGGAGGAGC 61.997 65.000 0.00 0.00 45.00 4.70
953 1051 2.445654 GGAGGAGCAGGAGGAGGG 60.446 72.222 0.00 0.00 0.00 4.30
957 1073 3.151022 GAGCAGGAGGAGGGGACG 61.151 72.222 0.00 0.00 0.00 4.79
1060 1176 0.179034 GACCTCCATGCCATCTGTCC 60.179 60.000 0.00 0.00 0.00 4.02
1061 1177 1.227764 CCTCCATGCCATCTGTCCG 60.228 63.158 0.00 0.00 0.00 4.79
1095 1212 2.354821 AGAGAGTTGTTCGTTTGCCAAC 59.645 45.455 0.00 0.00 38.94 3.77
1135 1252 3.131709 TGTCTTTCTCCTTGCAGGAAG 57.868 47.619 0.00 0.00 45.28 3.46
1138 1255 0.606401 TTTCTCCTTGCAGGAAGCGG 60.606 55.000 0.00 0.00 45.28 5.52
1215 1332 1.377725 AGGCCCTCTTTCATGCACG 60.378 57.895 0.00 0.00 0.00 5.34
1321 1448 6.798427 TGAGACTGCTCTTGTATTAATCCT 57.202 37.500 0.00 0.00 41.84 3.24
1334 1462 3.926821 TTAATCCTTTCCACGCAAACC 57.073 42.857 0.00 0.00 0.00 3.27
1417 1545 2.464459 GGAGATCGCCCAAGCAACG 61.464 63.158 3.71 0.00 39.83 4.10
1432 1560 1.921887 GCAACGCATAACTAGTACGCA 59.078 47.619 0.00 0.00 0.00 5.24
1433 1561 2.538449 GCAACGCATAACTAGTACGCAT 59.462 45.455 0.00 0.00 0.00 4.73
1434 1562 3.000925 GCAACGCATAACTAGTACGCATT 59.999 43.478 0.00 0.00 0.00 3.56
1435 1563 4.493545 GCAACGCATAACTAGTACGCATTT 60.494 41.667 0.00 0.00 0.00 2.32
1436 1564 5.188194 CAACGCATAACTAGTACGCATTTC 58.812 41.667 0.00 0.00 0.00 2.17
1437 1565 4.426416 ACGCATAACTAGTACGCATTTCA 58.574 39.130 0.00 0.00 0.00 2.69
1438 1566 5.047847 ACGCATAACTAGTACGCATTTCAT 58.952 37.500 0.00 0.00 0.00 2.57
1439 1567 5.051039 ACGCATAACTAGTACGCATTTCATG 60.051 40.000 0.00 0.00 0.00 3.07
1440 1568 5.051039 CGCATAACTAGTACGCATTTCATGT 60.051 40.000 0.00 0.00 0.00 3.21
1453 1581 5.335127 GCATTTCATGTTTCTGCTATTCGT 58.665 37.500 0.00 0.00 0.00 3.85
1461 1589 1.062525 CTGCTATTCGTTTGCCGCC 59.937 57.895 0.00 0.00 36.19 6.13
1463 1591 1.352056 GCTATTCGTTTGCCGCCTC 59.648 57.895 0.00 0.00 36.19 4.70
1502 1630 4.021981 GCTTTCCTGGTTCTAATGTGCTTT 60.022 41.667 0.00 0.00 0.00 3.51
1503 1631 5.452078 TTTCCTGGTTCTAATGTGCTTTG 57.548 39.130 0.00 0.00 0.00 2.77
1566 1694 2.168728 GTGGAAGAGGGTCAGTGATACC 59.831 54.545 8.38 8.38 36.19 2.73
1649 1778 4.390297 GGGAGACTAATCTTGATAATGCGC 59.610 45.833 0.00 0.00 34.34 6.09
1704 1833 5.724370 TCTTGTGTAGGGATTGATTGTCCTA 59.276 40.000 0.00 0.00 36.00 2.94
1785 1914 8.560374 TCTTATCAGATATCGGTAATGCTATCG 58.440 37.037 2.69 0.00 32.62 2.92
1792 1921 3.687125 TCGGTAATGCTATCGATCCTCT 58.313 45.455 0.00 0.00 35.73 3.69
1793 1922 4.079970 TCGGTAATGCTATCGATCCTCTT 58.920 43.478 0.00 0.00 35.73 2.85
1794 1923 4.523173 TCGGTAATGCTATCGATCCTCTTT 59.477 41.667 0.00 0.00 35.73 2.52
1795 1924 4.859798 CGGTAATGCTATCGATCCTCTTTC 59.140 45.833 0.00 0.00 33.17 2.62
1796 1925 5.172205 GGTAATGCTATCGATCCTCTTTCC 58.828 45.833 0.00 0.00 0.00 3.13
1797 1926 5.046950 GGTAATGCTATCGATCCTCTTTCCT 60.047 44.000 0.00 0.00 0.00 3.36
1798 1927 5.559148 AATGCTATCGATCCTCTTTCCTT 57.441 39.130 0.00 0.00 0.00 3.36
1799 1928 4.592485 TGCTATCGATCCTCTTTCCTTC 57.408 45.455 0.00 0.00 0.00 3.46
1800 1929 3.322254 TGCTATCGATCCTCTTTCCTTCC 59.678 47.826 0.00 0.00 0.00 3.46
1801 1930 3.612955 GCTATCGATCCTCTTTCCTTCCG 60.613 52.174 0.00 0.00 0.00 4.30
1806 1935 3.881688 CGATCCTCTTTCCTTCCGTACTA 59.118 47.826 0.00 0.00 0.00 1.82
1814 1943 1.822990 TCCTTCCGTACTACCTGCTTG 59.177 52.381 0.00 0.00 0.00 4.01
1819 1951 3.159472 TCCGTACTACCTGCTTGAAGAA 58.841 45.455 0.00 0.00 0.00 2.52
1825 1957 2.664402 ACCTGCTTGAAGAACCACAT 57.336 45.000 0.00 0.00 0.00 3.21
1841 1973 6.989169 AGAACCACATAAGCATCTCATCTTAC 59.011 38.462 0.00 0.00 0.00 2.34
1848 1980 4.052159 AGCATCTCATCTTACGTTCCTG 57.948 45.455 0.00 0.00 0.00 3.86
1849 1981 2.541762 GCATCTCATCTTACGTTCCTGC 59.458 50.000 0.00 0.00 0.00 4.85
1860 1992 3.610040 ACGTTCCTGCATCATACTTGA 57.390 42.857 0.00 0.00 36.00 3.02
1989 2121 7.009357 CAGAGCCTCGTTAGTTTAGTTAATGAC 59.991 40.741 0.00 0.00 0.00 3.06
2094 2226 2.871182 TCTGATCGGCACATACTGTC 57.129 50.000 0.00 0.00 0.00 3.51
2097 2229 2.099405 TGATCGGCACATACTGTCTCA 58.901 47.619 0.00 0.00 0.00 3.27
2100 2232 3.710326 TCGGCACATACTGTCTCATAC 57.290 47.619 0.00 0.00 0.00 2.39
2112 2244 9.150348 CATACTGTCTCATACACATGTTTGTTA 57.850 33.333 0.00 0.00 32.34 2.41
2119 2251 6.841119 TCATACACATGTTTGTTATGCTGAC 58.159 36.000 0.00 0.00 32.34 3.51
2125 2257 6.798476 CACATGTTTGTTATGCTGACTAGTTG 59.202 38.462 0.00 0.00 32.34 3.16
2134 2266 4.137116 TGCTGACTAGTTGTCTGTGTTT 57.863 40.909 11.87 0.00 45.54 2.83
2185 2317 3.249189 GGGCCACACAGGAGTCCA 61.249 66.667 12.86 0.00 41.22 4.02
2338 2470 5.105675 GGATGGAGATCGTTATTCTAGGGAC 60.106 48.000 0.00 0.00 0.00 4.46
2461 2596 0.814010 CATCCCGGTCCGTTTCATCC 60.814 60.000 11.06 0.00 0.00 3.51
2652 2787 8.967664 AGGTAAAAATGTAGTGTTGTTGAGTA 57.032 30.769 0.00 0.00 0.00 2.59
3043 3178 1.073025 CCTGCTGCACAACCACCTA 59.927 57.895 0.00 0.00 0.00 3.08
3151 3287 6.017440 TGTGCTCATGACTAAACCAAAGTTAC 60.017 38.462 0.00 0.00 34.19 2.50
3164 3300 6.009115 ACCAAAGTTACGGAAAATAGCAAG 57.991 37.500 0.00 0.00 0.00 4.01
3166 3302 5.182380 CCAAAGTTACGGAAAATAGCAAGGA 59.818 40.000 0.00 0.00 0.00 3.36
3236 3374 5.009610 TGGAAGAATTTTGACTAACTGGCAC 59.990 40.000 0.00 0.00 30.21 5.01
3250 3388 2.482721 ACTGGCACGTTGCTGTTATAAC 59.517 45.455 8.75 8.75 44.28 1.89
3426 3566 0.249322 CGACTGACGTCCCAAGTGTT 60.249 55.000 14.12 0.00 36.82 3.32
3436 3576 1.355381 TCCCAAGTGTTGAGCCATCAT 59.645 47.619 0.00 0.00 34.73 2.45
3516 3656 7.904558 ATTCAGTGAGGTATGAATCTGTAGA 57.095 36.000 0.00 0.00 41.18 2.59
3517 3657 7.718334 TTCAGTGAGGTATGAATCTGTAGAA 57.282 36.000 0.00 0.00 30.67 2.10
3518 3658 7.101652 TCAGTGAGGTATGAATCTGTAGAAC 57.898 40.000 0.00 0.00 0.00 3.01
3519 3659 6.892456 TCAGTGAGGTATGAATCTGTAGAACT 59.108 38.462 0.00 0.00 0.00 3.01
3520 3660 7.397476 TCAGTGAGGTATGAATCTGTAGAACTT 59.603 37.037 0.00 0.00 0.00 2.66
3521 3661 8.687242 CAGTGAGGTATGAATCTGTAGAACTTA 58.313 37.037 0.00 0.00 0.00 2.24
3522 3662 8.908903 AGTGAGGTATGAATCTGTAGAACTTAG 58.091 37.037 0.00 0.00 0.00 2.18
3523 3663 8.688151 GTGAGGTATGAATCTGTAGAACTTAGT 58.312 37.037 0.00 0.00 0.00 2.24
3596 3736 8.375506 AGATACAATTTAGACTGGACTGTTTCA 58.624 33.333 0.00 0.00 0.00 2.69
3600 3740 9.003658 ACAATTTAGACTGGACTGTTTCATAAG 57.996 33.333 0.00 0.00 0.00 1.73
3605 3745 6.831976 AGACTGGACTGTTTCATAAGTTCTT 58.168 36.000 0.00 0.00 0.00 2.52
3752 3902 6.514048 GCATCTGGAGTAATGTTGGCTAAATC 60.514 42.308 0.00 0.00 0.00 2.17
3756 3906 4.024809 GGAGTAATGTTGGCTAAATCTCGC 60.025 45.833 0.00 0.00 0.00 5.03
3757 3907 3.555956 AGTAATGTTGGCTAAATCTCGCG 59.444 43.478 0.00 0.00 0.00 5.87
3799 3949 4.616181 AAACGTGAAGTGACTTCCTTTG 57.384 40.909 21.45 11.24 39.51 2.77
3874 4024 5.532406 ACAAGCAGACATTCAGCTTTTTCTA 59.468 36.000 3.30 0.00 45.10 2.10
4151 4301 0.690762 GCACCACCTCCTTACCTTCA 59.309 55.000 0.00 0.00 0.00 3.02
4178 4328 0.452987 CACATGCAAATCCGTCCCAG 59.547 55.000 0.00 0.00 0.00 4.45
4290 4470 3.196254 AGCCACAAACCCATCATCATTTC 59.804 43.478 0.00 0.00 0.00 2.17
4319 4577 2.345880 CTGCGCCATCATTTGCTCCC 62.346 60.000 4.18 0.00 0.00 4.30
4326 4584 0.032813 ATCATTTGCTCCCCCACAGG 60.033 55.000 0.00 0.00 0.00 4.00
4381 4639 0.892358 CAGGCACCTCAACATGCAGT 60.892 55.000 0.00 0.00 43.93 4.40
4412 4670 1.753073 CCATCAGGCCCATCAAACTTC 59.247 52.381 0.00 0.00 0.00 3.01
4431 4689 3.111853 TCTATATGCAACCGGCTTCAG 57.888 47.619 0.00 0.00 45.15 3.02
4432 4690 2.146342 CTATATGCAACCGGCTTCAGG 58.854 52.381 0.00 0.00 45.15 3.86
4433 4691 0.466189 ATATGCAACCGGCTTCAGGG 60.466 55.000 0.00 0.00 45.15 4.45
4434 4692 1.558167 TATGCAACCGGCTTCAGGGA 61.558 55.000 0.00 0.00 45.15 4.20
4435 4693 3.056328 GCAACCGGCTTCAGGGAC 61.056 66.667 0.00 0.00 40.25 4.46
4436 4694 2.750350 CAACCGGCTTCAGGGACT 59.250 61.111 0.00 0.00 43.88 3.85
4456 4714 2.321213 GCGTTAATAGCCTGCCTGG 58.679 57.895 0.00 0.00 39.35 4.45
4457 4715 1.166531 GCGTTAATAGCCTGCCTGGG 61.167 60.000 0.00 0.00 36.00 4.45
4458 4716 0.468226 CGTTAATAGCCTGCCTGGGA 59.532 55.000 0.00 0.00 36.00 4.37
4459 4717 1.072331 CGTTAATAGCCTGCCTGGGAT 59.928 52.381 0.00 0.00 36.00 3.85
4460 4718 2.487265 CGTTAATAGCCTGCCTGGGATT 60.487 50.000 0.00 0.00 36.00 3.01
4461 4719 3.149981 GTTAATAGCCTGCCTGGGATTC 58.850 50.000 0.00 0.00 36.00 2.52
4462 4720 0.480252 AATAGCCTGCCTGGGATTCC 59.520 55.000 0.00 0.00 36.00 3.01
4463 4721 0.402566 ATAGCCTGCCTGGGATTCCT 60.403 55.000 2.01 0.00 36.00 3.36
4464 4722 0.624500 TAGCCTGCCTGGGATTCCTT 60.625 55.000 2.01 0.00 36.00 3.36
4465 4723 1.454663 GCCTGCCTGGGATTCCTTC 60.455 63.158 2.01 0.00 36.00 3.46
4466 4724 1.153086 CCTGCCTGGGATTCCTTCG 60.153 63.158 2.01 0.00 0.00 3.79
4492 4750 0.536006 GGAGCACCACCATCCTATGC 60.536 60.000 0.00 0.00 36.52 3.14
4546 4804 1.174712 GCACCTCAGCAAAGCTTCCA 61.175 55.000 0.00 0.00 36.40 3.53
4650 4908 1.495579 ATCTGGTGCCAGCACTCCTT 61.496 55.000 21.19 3.33 45.52 3.36
4832 5107 3.869272 GCGCCTGCAATGTCCTCG 61.869 66.667 0.00 0.00 42.15 4.63
4849 5124 3.372822 TCCTCGTTCTGTTTTTGTGTGTC 59.627 43.478 0.00 0.00 0.00 3.67
4871 5146 7.001674 TGTCCTGACCTAATTGTATGTTGTTT 58.998 34.615 0.00 0.00 0.00 2.83
5151 5432 0.562177 CAATGGGGATGGGAATGGGA 59.438 55.000 0.00 0.00 0.00 4.37
5152 5433 1.062275 CAATGGGGATGGGAATGGGAA 60.062 52.381 0.00 0.00 0.00 3.97
5153 5434 1.561237 ATGGGGATGGGAATGGGAAT 58.439 50.000 0.00 0.00 0.00 3.01
5154 5435 0.562177 TGGGGATGGGAATGGGAATG 59.438 55.000 0.00 0.00 0.00 2.67
5155 5436 0.178924 GGGGATGGGAATGGGAATGG 60.179 60.000 0.00 0.00 0.00 3.16
5156 5437 0.178924 GGGATGGGAATGGGAATGGG 60.179 60.000 0.00 0.00 0.00 4.00
5289 5570 2.102578 GGAATGGGGATGAACCAACAG 58.897 52.381 0.00 0.00 42.17 3.16
5290 5571 2.102578 GAATGGGGATGAACCAACAGG 58.897 52.381 0.00 0.00 42.17 4.00
5291 5572 0.336048 ATGGGGATGAACCAACAGGG 59.664 55.000 0.00 0.00 42.17 4.45
5302 5583 1.221635 CCAACAGGGTATGGGGATGA 58.778 55.000 0.00 0.00 32.87 2.92
5303 5584 1.568597 CCAACAGGGTATGGGGATGAA 59.431 52.381 0.00 0.00 32.87 2.57
5304 5585 2.654863 CAACAGGGTATGGGGATGAAC 58.345 52.381 0.00 0.00 0.00 3.18
5310 5591 1.620822 GTATGGGGATGAACATGGGC 58.379 55.000 0.00 0.00 0.00 5.36
5364 5645 2.109517 CTCAGATGGGGATGGCTCCG 62.110 65.000 0.00 0.00 43.11 4.63
5453 5734 3.118738 GGGTACAGGTGAGATTACACAGG 60.119 52.174 0.00 0.00 41.88 4.00
5454 5735 2.770164 ACAGGTGAGATTACACAGGC 57.230 50.000 0.00 0.00 41.88 4.85
5672 5968 4.038282 TGGATGCAAAGCCACATGATATTC 59.962 41.667 0.00 0.00 0.00 1.75
5813 6110 4.797471 TGAATTTCTGTTCGCTCCATTTG 58.203 39.130 0.00 0.00 0.00 2.32
5814 6111 4.518590 TGAATTTCTGTTCGCTCCATTTGA 59.481 37.500 0.00 0.00 0.00 2.69
5817 6114 6.757897 ATTTCTGTTCGCTCCATTTGAATA 57.242 33.333 0.00 0.00 0.00 1.75
5818 6115 6.567687 TTTCTGTTCGCTCCATTTGAATAA 57.432 33.333 0.00 0.00 0.00 1.40
5819 6116 5.545658 TCTGTTCGCTCCATTTGAATAAC 57.454 39.130 0.00 0.00 0.00 1.89
5825 6128 2.791004 GCTCCATTTGAATAACGCATGC 59.209 45.455 7.91 7.91 0.00 4.06
5872 6228 8.469309 TGATGAAACTTTTGAGGAAAGAAGAT 57.531 30.769 5.60 0.00 46.24 2.40
5880 6236 5.832539 TTGAGGAAAGAAGATCTGGAACT 57.167 39.130 0.00 0.00 0.00 3.01
5882 6238 5.555017 TGAGGAAAGAAGATCTGGAACTTG 58.445 41.667 0.00 0.00 0.00 3.16
5883 6239 5.307976 TGAGGAAAGAAGATCTGGAACTTGA 59.692 40.000 0.00 0.00 0.00 3.02
5885 6241 4.940654 GGAAAGAAGATCTGGAACTTGAGG 59.059 45.833 0.00 0.00 0.00 3.86
5886 6242 3.625649 AGAAGATCTGGAACTTGAGGC 57.374 47.619 0.00 0.00 0.00 4.70
5887 6243 2.093764 AGAAGATCTGGAACTTGAGGCG 60.094 50.000 0.00 0.00 0.00 5.52
5888 6244 1.270907 AGATCTGGAACTTGAGGCGT 58.729 50.000 0.00 0.00 0.00 5.68
5889 6245 1.625818 AGATCTGGAACTTGAGGCGTT 59.374 47.619 0.00 0.00 0.00 4.84
5891 6247 1.593196 TCTGGAACTTGAGGCGTTTG 58.407 50.000 0.00 0.00 0.00 2.93
5892 6248 0.593128 CTGGAACTTGAGGCGTTTGG 59.407 55.000 0.00 0.00 0.00 3.28
5893 6249 0.106918 TGGAACTTGAGGCGTTTGGT 60.107 50.000 0.00 0.00 0.00 3.67
5894 6250 1.141254 TGGAACTTGAGGCGTTTGGTA 59.859 47.619 0.00 0.00 0.00 3.25
5895 6251 1.804748 GGAACTTGAGGCGTTTGGTAG 59.195 52.381 0.00 0.00 0.00 3.18
5896 6252 2.549349 GGAACTTGAGGCGTTTGGTAGA 60.549 50.000 0.00 0.00 0.00 2.59
5897 6253 2.457366 ACTTGAGGCGTTTGGTAGAG 57.543 50.000 0.00 0.00 0.00 2.43
5898 6254 1.692519 ACTTGAGGCGTTTGGTAGAGT 59.307 47.619 0.00 0.00 0.00 3.24
5899 6255 2.895404 ACTTGAGGCGTTTGGTAGAGTA 59.105 45.455 0.00 0.00 0.00 2.59
5900 6256 3.056749 ACTTGAGGCGTTTGGTAGAGTAG 60.057 47.826 0.00 0.00 0.00 2.57
5901 6257 2.522185 TGAGGCGTTTGGTAGAGTAGT 58.478 47.619 0.00 0.00 0.00 2.73
5902 6258 3.689347 TGAGGCGTTTGGTAGAGTAGTA 58.311 45.455 0.00 0.00 0.00 1.82
5903 6259 4.081406 TGAGGCGTTTGGTAGAGTAGTAA 58.919 43.478 0.00 0.00 0.00 2.24
5904 6260 4.157289 TGAGGCGTTTGGTAGAGTAGTAAG 59.843 45.833 0.00 0.00 0.00 2.34
5905 6261 4.085009 AGGCGTTTGGTAGAGTAGTAAGT 58.915 43.478 0.00 0.00 0.00 2.24
5906 6262 5.256474 AGGCGTTTGGTAGAGTAGTAAGTA 58.744 41.667 0.00 0.00 0.00 2.24
5907 6263 5.356470 AGGCGTTTGGTAGAGTAGTAAGTAG 59.644 44.000 0.00 0.00 0.00 2.57
5908 6264 5.449725 GGCGTTTGGTAGAGTAGTAAGTAGG 60.450 48.000 0.00 0.00 0.00 3.18
5909 6265 5.355350 GCGTTTGGTAGAGTAGTAAGTAGGA 59.645 44.000 0.00 0.00 0.00 2.94
5910 6266 6.458070 GCGTTTGGTAGAGTAGTAAGTAGGAG 60.458 46.154 0.00 0.00 0.00 3.69
5911 6267 6.597280 CGTTTGGTAGAGTAGTAAGTAGGAGT 59.403 42.308 0.00 0.00 0.00 3.85
5912 6268 7.766278 CGTTTGGTAGAGTAGTAAGTAGGAGTA 59.234 40.741 0.00 0.00 0.00 2.59
5913 6269 8.888716 GTTTGGTAGAGTAGTAAGTAGGAGTAC 58.111 40.741 0.00 0.00 0.00 2.73
5933 6289 6.831976 AGTACAAATCAGAGTTTTGAGAGGT 58.168 36.000 3.88 0.00 37.48 3.85
5951 6307 0.950555 GTCGGATGTGCAGCAGTTCA 60.951 55.000 0.00 0.00 0.00 3.18
5963 6319 1.284198 AGCAGTTCATGAAGGCATCCT 59.716 47.619 25.54 10.50 33.87 3.24
5968 6324 3.009916 AGTTCATGAAGGCATCCTTGTCT 59.990 43.478 8.80 0.00 44.82 3.41
5980 6336 1.301677 CCTTGTCTTGGCGGAAGAGC 61.302 60.000 0.00 0.00 41.58 4.09
6227 6589 1.000145 GGCGAAGTCGATGAAAGACC 59.000 55.000 4.59 0.00 43.02 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.368739 GGAAATGGACAAAGCAGGAATGG 60.369 47.826 0.00 0.00 0.00 3.16
1 2 3.512724 AGGAAATGGACAAAGCAGGAATG 59.487 43.478 0.00 0.00 0.00 2.67
5 6 4.309933 GAAAAGGAAATGGACAAAGCAGG 58.690 43.478 0.00 0.00 0.00 4.85
6 7 4.202243 TGGAAAAGGAAATGGACAAAGCAG 60.202 41.667 0.00 0.00 0.00 4.24
7 8 3.708631 TGGAAAAGGAAATGGACAAAGCA 59.291 39.130 0.00 0.00 0.00 3.91
8 9 4.335400 TGGAAAAGGAAATGGACAAAGC 57.665 40.909 0.00 0.00 0.00 3.51
9 10 6.991531 TGAAATGGAAAAGGAAATGGACAAAG 59.008 34.615 0.00 0.00 0.00 2.77
10 11 6.893583 TGAAATGGAAAAGGAAATGGACAAA 58.106 32.000 0.00 0.00 0.00 2.83
11 12 6.491714 TGAAATGGAAAAGGAAATGGACAA 57.508 33.333 0.00 0.00 0.00 3.18
12 13 6.491714 TTGAAATGGAAAAGGAAATGGACA 57.508 33.333 0.00 0.00 0.00 4.02
13 14 8.314021 AGTATTGAAATGGAAAAGGAAATGGAC 58.686 33.333 0.00 0.00 0.00 4.02
14 15 8.434589 AGTATTGAAATGGAAAAGGAAATGGA 57.565 30.769 0.00 0.00 0.00 3.41
15 16 7.765819 GGAGTATTGAAATGGAAAAGGAAATGG 59.234 37.037 0.00 0.00 0.00 3.16
16 17 8.313292 TGGAGTATTGAAATGGAAAAGGAAATG 58.687 33.333 0.00 0.00 0.00 2.32
17 18 8.434589 TGGAGTATTGAAATGGAAAAGGAAAT 57.565 30.769 0.00 0.00 0.00 2.17
18 19 7.525360 GCTGGAGTATTGAAATGGAAAAGGAAA 60.525 37.037 0.00 0.00 0.00 3.13
19 20 6.071391 GCTGGAGTATTGAAATGGAAAAGGAA 60.071 38.462 0.00 0.00 0.00 3.36
20 21 5.418840 GCTGGAGTATTGAAATGGAAAAGGA 59.581 40.000 0.00 0.00 0.00 3.36
21 22 5.420104 AGCTGGAGTATTGAAATGGAAAAGG 59.580 40.000 0.00 0.00 0.00 3.11
22 23 6.151648 TGAGCTGGAGTATTGAAATGGAAAAG 59.848 38.462 0.00 0.00 0.00 2.27
23 24 6.009589 TGAGCTGGAGTATTGAAATGGAAAA 58.990 36.000 0.00 0.00 0.00 2.29
24 25 5.569355 TGAGCTGGAGTATTGAAATGGAAA 58.431 37.500 0.00 0.00 0.00 3.13
25 26 5.178096 TGAGCTGGAGTATTGAAATGGAA 57.822 39.130 0.00 0.00 0.00 3.53
26 27 4.842531 TGAGCTGGAGTATTGAAATGGA 57.157 40.909 0.00 0.00 0.00 3.41
27 28 4.518211 GGATGAGCTGGAGTATTGAAATGG 59.482 45.833 0.00 0.00 0.00 3.16
28 29 5.374921 AGGATGAGCTGGAGTATTGAAATG 58.625 41.667 0.00 0.00 0.00 2.32
29 30 5.131642 TGAGGATGAGCTGGAGTATTGAAAT 59.868 40.000 0.00 0.00 0.00 2.17
30 31 4.471025 TGAGGATGAGCTGGAGTATTGAAA 59.529 41.667 0.00 0.00 0.00 2.69
31 32 4.033009 TGAGGATGAGCTGGAGTATTGAA 58.967 43.478 0.00 0.00 0.00 2.69
32 33 3.640498 CTGAGGATGAGCTGGAGTATTGA 59.360 47.826 0.00 0.00 0.00 2.57
33 34 3.387374 ACTGAGGATGAGCTGGAGTATTG 59.613 47.826 0.00 0.00 0.00 1.90
34 35 3.652055 ACTGAGGATGAGCTGGAGTATT 58.348 45.455 0.00 0.00 0.00 1.89
35 36 3.326946 ACTGAGGATGAGCTGGAGTAT 57.673 47.619 0.00 0.00 0.00 2.12
36 37 2.836636 ACTGAGGATGAGCTGGAGTA 57.163 50.000 0.00 0.00 0.00 2.59
37 38 1.830477 GAACTGAGGATGAGCTGGAGT 59.170 52.381 0.00 0.00 0.00 3.85
38 39 1.138661 GGAACTGAGGATGAGCTGGAG 59.861 57.143 0.00 0.00 0.00 3.86
39 40 1.198713 GGAACTGAGGATGAGCTGGA 58.801 55.000 0.00 0.00 0.00 3.86
40 41 0.907486 TGGAACTGAGGATGAGCTGG 59.093 55.000 0.00 0.00 0.00 4.85
41 42 2.021355 GTGGAACTGAGGATGAGCTG 57.979 55.000 0.00 0.00 0.00 4.24
54 55 0.736053 TTTGTGCGTGGAAGTGGAAC 59.264 50.000 0.00 0.00 0.00 3.62
55 56 1.464734 TTTTGTGCGTGGAAGTGGAA 58.535 45.000 0.00 0.00 0.00 3.53
56 57 1.464734 TTTTTGTGCGTGGAAGTGGA 58.535 45.000 0.00 0.00 0.00 4.02
57 58 2.507339 ATTTTTGTGCGTGGAAGTGG 57.493 45.000 0.00 0.00 0.00 4.00
58 59 7.060633 GTCTATTTATTTTTGTGCGTGGAAGTG 59.939 37.037 0.00 0.00 0.00 3.16
59 60 7.081976 GTCTATTTATTTTTGTGCGTGGAAGT 58.918 34.615 0.00 0.00 0.00 3.01
60 61 7.081349 TGTCTATTTATTTTTGTGCGTGGAAG 58.919 34.615 0.00 0.00 0.00 3.46
61 62 6.971602 TGTCTATTTATTTTTGTGCGTGGAA 58.028 32.000 0.00 0.00 0.00 3.53
62 63 6.561737 TGTCTATTTATTTTTGTGCGTGGA 57.438 33.333 0.00 0.00 0.00 4.02
63 64 6.183359 CGTTGTCTATTTATTTTTGTGCGTGG 60.183 38.462 0.00 0.00 0.00 4.94
64 65 6.575572 TCGTTGTCTATTTATTTTTGTGCGTG 59.424 34.615 0.00 0.00 0.00 5.34
65 66 6.660722 TCGTTGTCTATTTATTTTTGTGCGT 58.339 32.000 0.00 0.00 0.00 5.24
66 67 6.795114 ACTCGTTGTCTATTTATTTTTGTGCG 59.205 34.615 0.00 0.00 0.00 5.34
67 68 9.769093 ATACTCGTTGTCTATTTATTTTTGTGC 57.231 29.630 0.00 0.00 0.00 4.57
69 70 9.769093 GCATACTCGTTGTCTATTTATTTTTGT 57.231 29.630 0.00 0.00 0.00 2.83
70 71 9.767684 TGCATACTCGTTGTCTATTTATTTTTG 57.232 29.630 0.00 0.00 0.00 2.44
71 72 9.769093 GTGCATACTCGTTGTCTATTTATTTTT 57.231 29.630 0.00 0.00 0.00 1.94
72 73 8.395633 GGTGCATACTCGTTGTCTATTTATTTT 58.604 33.333 0.00 0.00 0.00 1.82
73 74 7.254319 CGGTGCATACTCGTTGTCTATTTATTT 60.254 37.037 0.00 0.00 0.00 1.40
74 75 6.200286 CGGTGCATACTCGTTGTCTATTTATT 59.800 38.462 0.00 0.00 0.00 1.40
75 76 5.690409 CGGTGCATACTCGTTGTCTATTTAT 59.310 40.000 0.00 0.00 0.00 1.40
76 77 5.038683 CGGTGCATACTCGTTGTCTATTTA 58.961 41.667 0.00 0.00 0.00 1.40
77 78 3.863424 CGGTGCATACTCGTTGTCTATTT 59.137 43.478 0.00 0.00 0.00 1.40
78 79 3.444916 CGGTGCATACTCGTTGTCTATT 58.555 45.455 0.00 0.00 0.00 1.73
79 80 2.798499 GCGGTGCATACTCGTTGTCTAT 60.798 50.000 0.00 0.00 0.00 1.98
80 81 1.468565 GCGGTGCATACTCGTTGTCTA 60.469 52.381 0.00 0.00 0.00 2.59
81 82 0.736325 GCGGTGCATACTCGTTGTCT 60.736 55.000 0.00 0.00 0.00 3.41
82 83 1.011968 TGCGGTGCATACTCGTTGTC 61.012 55.000 0.00 0.00 31.71 3.18
83 84 0.601576 TTGCGGTGCATACTCGTTGT 60.602 50.000 0.00 0.00 38.76 3.32
84 85 0.179225 GTTGCGGTGCATACTCGTTG 60.179 55.000 0.00 0.00 38.76 4.10
91 92 3.535280 TCTAATCTGTTGCGGTGCATA 57.465 42.857 0.00 0.00 38.76 3.14
95 96 5.942872 AGAAAAATCTAATCTGTTGCGGTG 58.057 37.500 0.00 0.00 0.00 4.94
100 101 8.919661 GCTTCCAAAGAAAAATCTAATCTGTTG 58.080 33.333 0.00 0.00 0.00 3.33
102 103 7.308435 CGCTTCCAAAGAAAAATCTAATCTGT 58.692 34.615 0.00 0.00 0.00 3.41
117 123 1.727022 CAGTTGCGCGCTTCCAAAG 60.727 57.895 33.29 11.57 0.00 2.77
120 126 2.358615 ATCAGTTGCGCGCTTCCA 60.359 55.556 33.29 9.09 0.00 3.53
121 127 2.390599 TGATCAGTTGCGCGCTTCC 61.391 57.895 33.29 19.10 0.00 3.46
249 270 3.038710 CTCGTTTCTTTTGTGCTGCTTC 58.961 45.455 0.00 0.00 0.00 3.86
251 272 2.288666 TCTCGTTTCTTTTGTGCTGCT 58.711 42.857 0.00 0.00 0.00 4.24
278 299 3.151022 GTGCGAGGGGAGGGAGAG 61.151 72.222 0.00 0.00 0.00 3.20
317 345 0.109039 GTCTCCCTGAGTTGTCGCTC 60.109 60.000 0.00 0.00 36.12 5.03
402 444 1.674322 CAAAGGGGATTCCACGCGT 60.674 57.895 5.58 5.58 38.24 6.01
527 587 1.076412 AGCAGCGGAGAGATGGAGA 60.076 57.895 0.00 0.00 36.61 3.71
530 590 2.588314 GCAGCAGCGGAGAGATGG 60.588 66.667 0.00 0.00 36.61 3.51
833 917 2.095853 CGATTGCCAAATGAAGCGTAGT 59.904 45.455 0.00 0.00 0.00 2.73
869 967 3.000819 TGCCACCTACCCAGACGG 61.001 66.667 0.00 0.00 37.81 4.79
1060 1176 3.479505 ACTCTCTCTCGAATGAACACG 57.520 47.619 0.00 0.00 0.00 4.49
1061 1177 4.551388 ACAACTCTCTCTCGAATGAACAC 58.449 43.478 0.00 0.00 0.00 3.32
1138 1255 3.245479 TGAGGACCTTTTTATTCACCCCC 60.245 47.826 0.00 0.00 0.00 5.40
1180 1297 1.836802 GCCTGAGATCTCCTCACCTTT 59.163 52.381 20.03 0.00 46.38 3.11
1288 1413 9.703892 ATACAAGAGCAGTCTCATATTAACATC 57.296 33.333 0.00 0.00 41.81 3.06
1321 1448 0.394488 TCAGGTGGTTTGCGTGGAAA 60.394 50.000 0.00 0.00 0.00 3.13
1334 1462 4.095483 GGCATCAAGTATCTGTTTCAGGTG 59.905 45.833 0.00 0.00 31.51 4.00
1381 1509 2.446848 CGCCAGGAGGGATCCATGT 61.447 63.158 15.23 0.00 40.01 3.21
1432 1560 6.308766 GCAAACGAATAGCAGAAACATGAAAT 59.691 34.615 0.00 0.00 0.00 2.17
1433 1561 5.629020 GCAAACGAATAGCAGAAACATGAAA 59.371 36.000 0.00 0.00 0.00 2.69
1434 1562 5.153513 GCAAACGAATAGCAGAAACATGAA 58.846 37.500 0.00 0.00 0.00 2.57
1435 1563 4.379394 GGCAAACGAATAGCAGAAACATGA 60.379 41.667 0.00 0.00 0.00 3.07
1436 1564 3.853671 GGCAAACGAATAGCAGAAACATG 59.146 43.478 0.00 0.00 0.00 3.21
1437 1565 4.096732 GGCAAACGAATAGCAGAAACAT 57.903 40.909 0.00 0.00 0.00 2.71
1438 1566 3.552604 GGCAAACGAATAGCAGAAACA 57.447 42.857 0.00 0.00 0.00 2.83
1461 1589 4.379243 AGGGCACTGTTCGGCGAG 62.379 66.667 10.46 0.54 0.00 5.03
1473 1601 1.228552 GAACCAGGAAAGCAGGGCA 60.229 57.895 0.00 0.00 0.00 5.36
1502 1630 0.587768 CTCATGACTGCAAACACGCA 59.412 50.000 0.00 0.00 40.32 5.24
1503 1631 0.588252 ACTCATGACTGCAAACACGC 59.412 50.000 0.00 0.00 0.00 5.34
1566 1694 1.276415 CATGCCGCCAATTTTTACCG 58.724 50.000 0.00 0.00 0.00 4.02
1622 1750 1.120530 TCAAGATTAGTCTCCCCCGC 58.879 55.000 0.00 0.00 32.15 6.13
1623 1751 5.482908 CATTATCAAGATTAGTCTCCCCCG 58.517 45.833 0.00 0.00 32.15 5.73
1624 1752 5.249420 GCATTATCAAGATTAGTCTCCCCC 58.751 45.833 0.00 0.00 32.15 5.40
1625 1753 4.932200 CGCATTATCAAGATTAGTCTCCCC 59.068 45.833 0.00 0.00 32.15 4.81
1626 1754 4.390297 GCGCATTATCAAGATTAGTCTCCC 59.610 45.833 0.30 0.00 32.15 4.30
1629 1757 4.993584 CCAGCGCATTATCAAGATTAGTCT 59.006 41.667 11.47 0.00 35.82 3.24
1649 1778 3.374367 CAGCATCAGATTCAACTGTCCAG 59.626 47.826 0.00 0.00 38.79 3.86
1704 1833 3.384168 TCCATGTGCTACCAGGTAATCT 58.616 45.455 0.00 0.00 0.00 2.40
1785 1914 4.037803 GGTAGTACGGAAGGAAAGAGGATC 59.962 50.000 0.00 0.00 0.00 3.36
1792 1921 2.532843 AGCAGGTAGTACGGAAGGAAA 58.467 47.619 0.00 0.00 0.00 3.13
1793 1922 2.226962 AGCAGGTAGTACGGAAGGAA 57.773 50.000 0.00 0.00 0.00 3.36
1794 1923 1.822990 CAAGCAGGTAGTACGGAAGGA 59.177 52.381 0.00 0.00 0.00 3.36
1795 1924 1.822990 TCAAGCAGGTAGTACGGAAGG 59.177 52.381 0.00 0.00 0.00 3.46
1796 1925 3.192844 TCTTCAAGCAGGTAGTACGGAAG 59.807 47.826 0.00 0.00 33.59 3.46
1797 1926 3.159472 TCTTCAAGCAGGTAGTACGGAA 58.841 45.455 0.00 0.00 0.00 4.30
1798 1927 2.799017 TCTTCAAGCAGGTAGTACGGA 58.201 47.619 0.00 0.00 0.00 4.69
1799 1928 3.251571 GTTCTTCAAGCAGGTAGTACGG 58.748 50.000 0.00 0.00 0.00 4.02
1800 1929 3.251571 GGTTCTTCAAGCAGGTAGTACG 58.748 50.000 0.00 0.00 0.00 3.67
1801 1930 3.995048 GTGGTTCTTCAAGCAGGTAGTAC 59.005 47.826 0.00 0.00 40.69 2.73
1806 1935 2.664402 ATGTGGTTCTTCAAGCAGGT 57.336 45.000 0.00 0.00 40.69 4.00
1814 1943 6.054295 AGATGAGATGCTTATGTGGTTCTTC 58.946 40.000 0.00 0.00 0.00 2.87
1819 1951 5.163405 ACGTAAGATGAGATGCTTATGTGGT 60.163 40.000 0.00 0.00 42.27 4.16
1825 1957 5.592054 CAGGAACGTAAGATGAGATGCTTA 58.408 41.667 0.00 0.00 43.62 3.09
1841 1973 4.571984 TCAATCAAGTATGATGCAGGAACG 59.428 41.667 0.00 0.00 45.60 3.95
1860 1992 9.851686 TCCAGTTATATTTGTTAGAGCATCAAT 57.148 29.630 0.00 0.00 37.82 2.57
1873 2005 5.750067 GTGCCTGCAATTCCAGTTATATTTG 59.250 40.000 0.00 0.00 0.00 2.32
1882 2014 0.737219 GCTAGTGCCTGCAATTCCAG 59.263 55.000 0.00 0.00 0.00 3.86
1883 2015 0.329261 AGCTAGTGCCTGCAATTCCA 59.671 50.000 0.00 0.00 40.80 3.53
1989 2121 6.116126 CCTAACTTCCAGTATCCTTTCCTTG 58.884 44.000 0.00 0.00 0.00 3.61
2063 2195 3.561310 TGCCGATCAGATATTTGAAGCAC 59.439 43.478 12.22 0.91 31.18 4.40
2094 2226 6.963242 GTCAGCATAACAAACATGTGTATGAG 59.037 38.462 17.03 11.19 37.73 2.90
2097 2229 7.824289 ACTAGTCAGCATAACAAACATGTGTAT 59.176 33.333 0.00 0.00 0.00 2.29
2100 2232 6.486253 ACTAGTCAGCATAACAAACATGTG 57.514 37.500 0.00 0.00 0.00 3.21
2125 2257 7.486647 TCCGATACCTATAAAGAAACACAGAC 58.513 38.462 0.00 0.00 0.00 3.51
2134 2266 6.665992 AATGCACTCCGATACCTATAAAGA 57.334 37.500 0.00 0.00 0.00 2.52
2170 2302 2.348998 CCTGGACTCCTGTGTGGC 59.651 66.667 0.00 0.00 35.26 5.01
2185 2317 2.771943 ACGGTCATTGTCATATCCACCT 59.228 45.455 0.00 0.00 0.00 4.00
2338 2470 2.972625 TCCCTGTTGCGTTCATTAGAG 58.027 47.619 0.00 0.00 0.00 2.43
2425 2560 3.328931 GGGATGAATAAGCCTCCTCATCA 59.671 47.826 14.72 0.00 43.90 3.07
2461 2596 7.905493 GCTTAAGAATGTTAGATCGAAACAAGG 59.095 37.037 17.11 5.88 40.05 3.61
2548 2683 6.840705 AGGAGGATGTTTAACATAAATGGCAT 59.159 34.615 10.82 0.00 39.27 4.40
2652 2787 5.314529 GGAAGGACAAGCTAAAAGGTAAGT 58.685 41.667 0.00 0.00 0.00 2.24
3043 3178 2.034879 CATTCGGTTCAGCAGGCGT 61.035 57.895 0.00 0.00 0.00 5.68
3151 3287 6.868339 AGAACAAAAATCCTTGCTATTTTCCG 59.132 34.615 0.00 0.00 35.91 4.30
3426 3566 2.306805 ACCTGAACTTGATGATGGCTCA 59.693 45.455 0.00 0.00 35.41 4.26
3436 3576 4.011023 TCCGTTTCAAAACCTGAACTTGA 58.989 39.130 0.26 0.00 43.90 3.02
3516 3656 6.909909 GCAAATGGCAGTAAGTTACTAAGTT 58.090 36.000 15.13 7.20 43.97 2.66
3517 3657 6.496338 GCAAATGGCAGTAAGTTACTAAGT 57.504 37.500 15.13 1.56 43.97 2.24
3546 3686 1.645034 CCCATTATCATCGGCGCTAG 58.355 55.000 7.64 1.50 0.00 3.42
3585 3725 6.119536 ACACAAGAACTTATGAAACAGTCCA 58.880 36.000 0.00 0.00 0.00 4.02
3714 3864 3.531538 TCCAGATGCACGAAGGATAAAC 58.468 45.455 0.00 0.00 0.00 2.01
3724 3874 2.352651 CCAACATTACTCCAGATGCACG 59.647 50.000 0.00 0.00 0.00 5.34
3752 3902 3.857665 TCAGAAAAGTTATACTGCGCGAG 59.142 43.478 12.10 7.21 0.00 5.03
3756 3906 8.985694 CGTTTAATTCAGAAAAGTTATACTGCG 58.014 33.333 0.00 0.00 0.00 5.18
3757 3907 9.821662 ACGTTTAATTCAGAAAAGTTATACTGC 57.178 29.630 0.00 0.00 0.00 4.40
3799 3949 3.149196 ACACAACAGTCATTCCATCACC 58.851 45.455 0.00 0.00 0.00 4.02
4151 4301 1.901833 GGATTTGCATGTGAAACCCCT 59.098 47.619 0.00 0.00 34.36 4.79
4190 4340 0.183731 CCTGGGAGGGAACATAAGCC 59.816 60.000 0.00 0.00 0.00 4.35
4274 4454 4.284178 CCTGAGGAAATGATGATGGGTTT 58.716 43.478 0.00 0.00 0.00 3.27
4319 4577 1.075482 ATGTTGAGGTGCCTGTGGG 59.925 57.895 0.00 0.00 0.00 4.61
4381 4639 1.494721 GGCCTGATGGTAGATTGGGAA 59.505 52.381 0.00 0.00 35.27 3.97
4412 4670 2.146342 CCTGAAGCCGGTTGCATATAG 58.854 52.381 0.00 0.00 44.83 1.31
4431 4689 3.002277 GGCTATTAACGCCAGTCCC 57.998 57.895 11.66 0.00 46.77 4.46
4438 4696 1.166531 CCCAGGCAGGCTATTAACGC 61.167 60.000 0.00 0.00 35.39 4.84
4439 4697 0.468226 TCCCAGGCAGGCTATTAACG 59.532 55.000 0.00 0.00 35.39 3.18
4440 4698 2.959465 ATCCCAGGCAGGCTATTAAC 57.041 50.000 0.00 0.00 35.39 2.01
4441 4699 2.108250 GGAATCCCAGGCAGGCTATTAA 59.892 50.000 0.00 0.00 35.39 1.40
4442 4700 1.705186 GGAATCCCAGGCAGGCTATTA 59.295 52.381 0.00 0.00 35.39 0.98
4443 4701 0.480252 GGAATCCCAGGCAGGCTATT 59.520 55.000 0.00 0.00 35.39 1.73
4444 4702 0.402566 AGGAATCCCAGGCAGGCTAT 60.403 55.000 0.00 0.00 35.39 2.97
4445 4703 0.624500 AAGGAATCCCAGGCAGGCTA 60.625 55.000 0.00 0.00 35.39 3.93
4446 4704 1.931007 GAAGGAATCCCAGGCAGGCT 61.931 60.000 0.00 0.00 35.39 4.58
4447 4705 1.454663 GAAGGAATCCCAGGCAGGC 60.455 63.158 0.00 0.00 35.39 4.85
4448 4706 1.153086 CGAAGGAATCCCAGGCAGG 60.153 63.158 0.00 0.00 33.88 4.85
4449 4707 1.821332 GCGAAGGAATCCCAGGCAG 60.821 63.158 0.00 0.00 33.88 4.85
4450 4708 2.272146 GCGAAGGAATCCCAGGCA 59.728 61.111 0.00 0.00 33.88 4.75
4451 4709 1.821332 CTGCGAAGGAATCCCAGGC 60.821 63.158 0.00 0.00 31.50 4.85
4452 4710 0.253044 TTCTGCGAAGGAATCCCAGG 59.747 55.000 0.00 0.00 35.14 4.45
4453 4711 1.945394 CATTCTGCGAAGGAATCCCAG 59.055 52.381 0.00 0.00 35.63 4.45
4454 4712 1.408683 CCATTCTGCGAAGGAATCCCA 60.409 52.381 0.00 0.00 31.90 4.37
4455 4713 1.134098 TCCATTCTGCGAAGGAATCCC 60.134 52.381 0.00 0.00 31.90 3.85
4456 4714 2.216898 CTCCATTCTGCGAAGGAATCC 58.783 52.381 0.00 0.00 31.90 3.01
4457 4715 1.601430 GCTCCATTCTGCGAAGGAATC 59.399 52.381 0.00 1.57 31.90 2.52
4458 4716 1.065199 TGCTCCATTCTGCGAAGGAAT 60.065 47.619 0.00 0.00 34.21 3.01
4459 4717 0.324614 TGCTCCATTCTGCGAAGGAA 59.675 50.000 0.00 0.00 0.00 3.36
4460 4718 0.391661 GTGCTCCATTCTGCGAAGGA 60.392 55.000 0.00 6.82 0.00 3.36
4461 4719 1.372087 GGTGCTCCATTCTGCGAAGG 61.372 60.000 0.00 0.00 0.00 3.46
4462 4720 0.674581 TGGTGCTCCATTCTGCGAAG 60.675 55.000 2.64 0.00 39.03 3.79
4463 4721 0.955428 GTGGTGCTCCATTCTGCGAA 60.955 55.000 11.31 0.00 46.20 4.70
4464 4722 1.375908 GTGGTGCTCCATTCTGCGA 60.376 57.895 11.31 0.00 46.20 5.10
4465 4723 2.401766 GGTGGTGCTCCATTCTGCG 61.402 63.158 11.31 0.00 46.20 5.18
4466 4724 0.682209 ATGGTGGTGCTCCATTCTGC 60.682 55.000 11.31 0.00 46.20 4.26
4492 4750 3.364549 AGATGAGAAGACTGTGGAGGAG 58.635 50.000 0.00 0.00 0.00 3.69
4546 4804 2.127232 GGTGCAGCAGTTTGTGGGT 61.127 57.895 11.86 0.00 0.00 4.51
4650 4908 3.753272 GGAGCTGATAAACTTGACTGCAA 59.247 43.478 0.00 0.00 0.00 4.08
4832 5107 4.412207 GTCAGGACACACAAAAACAGAAC 58.588 43.478 0.00 0.00 0.00 3.01
4871 5146 6.173339 TGTGGATTGGTTTTTGCTGTAAAAA 58.827 32.000 11.53 11.53 43.88 1.94
5151 5432 2.637382 GGGTTGTTGGTTCATTCCCATT 59.363 45.455 0.00 0.00 34.48 3.16
5152 5433 2.256306 GGGTTGTTGGTTCATTCCCAT 58.744 47.619 0.00 0.00 34.48 4.00
5153 5434 1.062886 TGGGTTGTTGGTTCATTCCCA 60.063 47.619 0.00 0.00 38.48 4.37
5154 5435 1.710816 TGGGTTGTTGGTTCATTCCC 58.289 50.000 0.00 0.00 34.72 3.97
5155 5436 2.028203 CCATGGGTTGTTGGTTCATTCC 60.028 50.000 2.85 0.00 0.00 3.01
5156 5437 2.028203 CCCATGGGTTGTTGGTTCATTC 60.028 50.000 23.93 0.00 0.00 2.67
5289 5570 1.203050 CCCATGTTCATCCCCATACCC 60.203 57.143 0.00 0.00 0.00 3.69
5290 5571 1.823250 GCCCATGTTCATCCCCATACC 60.823 57.143 0.00 0.00 0.00 2.73
5291 5572 1.133513 TGCCCATGTTCATCCCCATAC 60.134 52.381 0.00 0.00 0.00 2.39
5292 5573 1.230074 TGCCCATGTTCATCCCCATA 58.770 50.000 0.00 0.00 0.00 2.74
5298 5579 1.044231 TGCCCATGCCCATGTTCATC 61.044 55.000 7.42 0.00 37.11 2.92
5302 5583 0.618107 TTCATGCCCATGCCCATGTT 60.618 50.000 17.81 0.00 39.74 2.71
5303 5584 1.001888 TTCATGCCCATGCCCATGT 59.998 52.632 17.81 0.00 39.74 3.21
5304 5585 1.444250 GTTCATGCCCATGCCCATG 59.556 57.895 14.29 14.29 40.05 3.66
5310 5591 1.759299 CCCCTGGTTCATGCCCATG 60.759 63.158 4.62 1.86 40.09 3.66
5424 5705 1.597797 CTCACCTGTACCCGCCGTAA 61.598 60.000 0.00 0.00 0.00 3.18
5453 5734 0.884704 TTCTCAAACCCTCGCTGTGC 60.885 55.000 0.00 0.00 0.00 4.57
5454 5735 1.593196 TTTCTCAAACCCTCGCTGTG 58.407 50.000 0.00 0.00 0.00 3.66
5813 6110 9.689976 ATCTATCTATGATAGCATGCGTTATTC 57.310 33.333 13.01 6.73 35.94 1.75
5817 6114 7.821359 ACAAATCTATCTATGATAGCATGCGTT 59.179 33.333 13.01 3.20 35.94 4.84
5818 6115 7.326454 ACAAATCTATCTATGATAGCATGCGT 58.674 34.615 13.01 5.03 35.94 5.24
5819 6116 7.767745 ACAAATCTATCTATGATAGCATGCG 57.232 36.000 13.01 0.00 35.94 4.73
5856 6203 6.605119 AGTTCCAGATCTTCTTTCCTCAAAA 58.395 36.000 0.00 0.00 0.00 2.44
5857 6204 6.192970 AGTTCCAGATCTTCTTTCCTCAAA 57.807 37.500 0.00 0.00 0.00 2.69
5858 6205 5.832539 AGTTCCAGATCTTCTTTCCTCAA 57.167 39.130 0.00 0.00 0.00 3.02
5867 6223 2.275318 CGCCTCAAGTTCCAGATCTTC 58.725 52.381 0.00 0.00 0.00 2.87
5872 6228 1.593196 CAAACGCCTCAAGTTCCAGA 58.407 50.000 0.00 0.00 0.00 3.86
5880 6236 2.895404 ACTACTCTACCAAACGCCTCAA 59.105 45.455 0.00 0.00 0.00 3.02
5882 6238 4.157472 ACTTACTACTCTACCAAACGCCTC 59.843 45.833 0.00 0.00 0.00 4.70
5883 6239 4.085009 ACTTACTACTCTACCAAACGCCT 58.915 43.478 0.00 0.00 0.00 5.52
5885 6241 5.355350 TCCTACTTACTACTCTACCAAACGC 59.645 44.000 0.00 0.00 0.00 4.84
5886 6242 6.597280 ACTCCTACTTACTACTCTACCAAACG 59.403 42.308 0.00 0.00 0.00 3.60
5887 6243 7.936496 ACTCCTACTTACTACTCTACCAAAC 57.064 40.000 0.00 0.00 0.00 2.93
5888 6244 8.605947 TGTACTCCTACTTACTACTCTACCAAA 58.394 37.037 0.00 0.00 0.00 3.28
5889 6245 8.150827 TGTACTCCTACTTACTACTCTACCAA 57.849 38.462 0.00 0.00 0.00 3.67
5891 6247 9.625747 ATTTGTACTCCTACTTACTACTCTACC 57.374 37.037 0.00 0.00 0.00 3.18
5894 6250 9.398538 CTGATTTGTACTCCTACTTACTACTCT 57.601 37.037 0.00 0.00 0.00 3.24
5895 6251 9.393512 TCTGATTTGTACTCCTACTTACTACTC 57.606 37.037 0.00 0.00 0.00 2.59
5896 6252 9.398538 CTCTGATTTGTACTCCTACTTACTACT 57.601 37.037 0.00 0.00 0.00 2.57
5897 6253 9.176460 ACTCTGATTTGTACTCCTACTTACTAC 57.824 37.037 0.00 0.00 0.00 2.73
5898 6254 9.750783 AACTCTGATTTGTACTCCTACTTACTA 57.249 33.333 0.00 0.00 0.00 1.82
5899 6255 8.653036 AACTCTGATTTGTACTCCTACTTACT 57.347 34.615 0.00 0.00 0.00 2.24
5900 6256 9.708092 AAAACTCTGATTTGTACTCCTACTTAC 57.292 33.333 0.00 0.00 0.00 2.34
5901 6257 9.706691 CAAAACTCTGATTTGTACTCCTACTTA 57.293 33.333 0.00 0.00 33.99 2.24
5902 6258 8.429641 TCAAAACTCTGATTTGTACTCCTACTT 58.570 33.333 0.00 0.00 38.57 2.24
5903 6259 7.963532 TCAAAACTCTGATTTGTACTCCTACT 58.036 34.615 0.00 0.00 38.57 2.57
5904 6260 8.088981 TCTCAAAACTCTGATTTGTACTCCTAC 58.911 37.037 0.00 0.00 38.57 3.18
5905 6261 8.190326 TCTCAAAACTCTGATTTGTACTCCTA 57.810 34.615 0.00 0.00 38.57 2.94
5906 6262 7.067496 TCTCAAAACTCTGATTTGTACTCCT 57.933 36.000 0.00 0.00 38.57 3.69
5907 6263 6.370166 CCTCTCAAAACTCTGATTTGTACTCC 59.630 42.308 0.00 0.00 38.57 3.85
5908 6264 6.931840 ACCTCTCAAAACTCTGATTTGTACTC 59.068 38.462 0.00 0.00 38.57 2.59
5909 6265 6.831976 ACCTCTCAAAACTCTGATTTGTACT 58.168 36.000 0.00 0.00 38.57 2.73
5910 6266 6.128795 CGACCTCTCAAAACTCTGATTTGTAC 60.129 42.308 4.25 0.00 38.57 2.90
5911 6267 5.926542 CGACCTCTCAAAACTCTGATTTGTA 59.073 40.000 4.25 0.00 38.57 2.41
5912 6268 4.752101 CGACCTCTCAAAACTCTGATTTGT 59.248 41.667 4.25 0.00 38.57 2.83
5913 6269 4.153117 CCGACCTCTCAAAACTCTGATTTG 59.847 45.833 0.00 0.00 38.76 2.32
5933 6289 0.036105 ATGAACTGCTGCACATCCGA 60.036 50.000 0.00 0.00 0.00 4.55
5951 6307 2.731572 CCAAGACAAGGATGCCTTCAT 58.268 47.619 0.00 0.00 42.67 2.57
5963 6319 1.667830 CGCTCTTCCGCCAAGACAA 60.668 57.895 0.00 0.00 36.08 3.18
5968 6324 2.314647 CGTTTCGCTCTTCCGCCAA 61.315 57.895 0.00 0.00 0.00 4.52
5969 6325 2.144833 TACGTTTCGCTCTTCCGCCA 62.145 55.000 0.00 0.00 0.00 5.69
6227 6589 0.026027 GTCGACGACGCCTACTACAG 59.974 60.000 12.94 0.00 39.58 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.