Multiple sequence alignment - TraesCS6D01G359300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G359300 chr6D 100.000 3432 0 0 1 3432 451785906 451782475 0.000000e+00 6338.0
1 TraesCS6D01G359300 chr6D 91.269 1214 80 17 1680 2886 451854916 451856110 0.000000e+00 1631.0
2 TraesCS6D01G359300 chr6D 94.444 342 14 3 1292 1629 451854428 451854768 3.920000e-144 521.0
3 TraesCS6D01G359300 chr6D 93.910 312 15 3 961 1269 451812835 451813145 5.190000e-128 468.0
4 TraesCS6D01G359300 chr6D 96.209 211 6 2 544 753 451804431 451804640 9.120000e-91 344.0
5 TraesCS6D01G359300 chr6D 90.000 230 8 4 753 970 451804670 451804896 2.020000e-72 283.0
6 TraesCS6D01G359300 chr6D 95.652 46 2 0 76 121 451804237 451804282 1.320000e-09 75.0
7 TraesCS6D01G359300 chr6D 89.362 47 5 0 2652 2698 451855836 451855882 3.700000e-05 60.2
8 TraesCS6D01G359300 chr6B 90.565 2512 123 51 256 2697 686194367 686191900 0.000000e+00 3221.0
9 TraesCS6D01G359300 chr6B 82.274 598 84 13 1017 1605 686215765 686215181 6.610000e-137 497.0
10 TraesCS6D01G359300 chr6B 85.545 422 43 11 2607 3016 686191946 686191531 3.170000e-115 425.0
11 TraesCS6D01G359300 chr6B 90.213 235 20 3 3199 3432 686191450 686191218 1.550000e-78 303.0
12 TraesCS6D01G359300 chr6B 85.043 234 20 6 1 231 686195002 686194781 1.240000e-54 224.0
13 TraesCS6D01G359300 chr6A 89.568 1342 77 29 1643 2963 597700430 597699131 0.000000e+00 1644.0
14 TraesCS6D01G359300 chr6A 91.630 908 33 17 751 1624 597701387 597700489 0.000000e+00 1216.0
15 TraesCS6D01G359300 chr6A 90.717 237 22 0 3196 3432 597668302 597668538 1.990000e-82 316.0
16 TraesCS6D01G359300 chr6A 88.587 184 16 3 3004 3187 597668076 597668254 5.770000e-53 219.0
17 TraesCS6D01G359300 chr6A 90.260 154 12 3 479 630 597703129 597702977 7.510000e-47 198.0
18 TraesCS6D01G359300 chr6A 91.270 126 9 2 1 124 597703327 597703202 1.640000e-38 171.0
19 TraesCS6D01G359300 chr6A 89.655 58 4 1 629 686 597701551 597701496 4.750000e-09 73.1
20 TraesCS6D01G359300 chr6A 86.154 65 2 3 689 753 597701475 597701418 2.860000e-06 63.9
21 TraesCS6D01G359300 chrUn 85.880 1296 57 37 751 1982 99816593 99817826 0.000000e+00 1264.0
22 TraesCS6D01G359300 chrUn 89.043 867 74 13 1968 2826 99818191 99819044 0.000000e+00 1055.0
23 TraesCS6D01G359300 chrUn 79.856 278 27 11 431 682 99816243 99816517 3.520000e-40 176.0
24 TraesCS6D01G359300 chrUn 82.857 140 14 7 203 333 93157160 93157022 2.160000e-22 117.0
25 TraesCS6D01G359300 chrUn 94.000 50 3 0 75 124 99816202 99816251 3.670000e-10 76.8
26 TraesCS6D01G359300 chr7B 85.761 309 39 2 952 1258 678901064 678900759 4.270000e-84 322.0
27 TraesCS6D01G359300 chr7B 85.764 288 41 0 1306 1593 678899399 678899112 4.300000e-79 305.0
28 TraesCS6D01G359300 chr7B 84.211 133 11 8 203 326 41282101 41282232 1.670000e-23 121.0
29 TraesCS6D01G359300 chr7D 76.265 573 99 24 1032 1598 90597814 90598355 1.570000e-68 270.0
30 TraesCS6D01G359300 chr7D 85.833 120 12 5 212 326 213516512 213516631 4.650000e-24 122.0
31 TraesCS6D01G359300 chr7D 85.938 64 7 2 3127 3190 189437952 189438013 2.210000e-07 67.6
32 TraesCS6D01G359300 chr2D 85.294 136 13 7 203 333 196004515 196004648 2.150000e-27 134.0
33 TraesCS6D01G359300 chr2D 88.034 117 9 5 213 326 293712203 293712317 2.150000e-27 134.0
34 TraesCS6D01G359300 chr5A 89.216 102 9 2 219 318 7355425 7355324 3.600000e-25 126.0
35 TraesCS6D01G359300 chr5A 84.496 129 10 7 213 333 616153219 616153093 6.020000e-23 119.0
36 TraesCS6D01G359300 chr5A 87.037 54 5 2 3137 3190 564192664 564192715 3.700000e-05 60.2
37 TraesCS6D01G359300 chr3D 87.963 108 9 4 229 333 179916944 179917050 1.290000e-24 124.0
38 TraesCS6D01G359300 chr3D 90.323 62 5 1 3130 3190 598077032 598077093 2.840000e-11 80.5
39 TraesCS6D01G359300 chr3D 87.273 55 5 2 3137 3190 613928480 613928533 1.030000e-05 62.1
40 TraesCS6D01G359300 chr3A 88.710 62 6 1 3130 3190 728098422 728098483 1.320000e-09 75.0
41 TraesCS6D01G359300 chr3A 85.484 62 8 1 3130 3190 728236878 728236939 2.860000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G359300 chr6D 451782475 451785906 3431 True 6338.00 6338 100.000000 1 3432 1 chr6D.!!$R1 3431
1 TraesCS6D01G359300 chr6D 451854428 451856110 1682 False 737.40 1631 91.691667 1292 2886 3 chr6D.!!$F3 1594
2 TraesCS6D01G359300 chr6D 451804237 451804896 659 False 234.00 344 93.953667 76 970 3 chr6D.!!$F2 894
3 TraesCS6D01G359300 chr6B 686191218 686195002 3784 True 1043.25 3221 87.841500 1 3432 4 chr6B.!!$R2 3431
4 TraesCS6D01G359300 chr6B 686215181 686215765 584 True 497.00 497 82.274000 1017 1605 1 chr6B.!!$R1 588
5 TraesCS6D01G359300 chr6A 597699131 597703327 4196 True 561.00 1644 89.756167 1 2963 6 chr6A.!!$R1 2962
6 TraesCS6D01G359300 chrUn 99816202 99819044 2842 False 642.95 1264 87.194750 75 2826 4 chrUn.!!$F1 2751
7 TraesCS6D01G359300 chr7B 678899112 678901064 1952 True 313.50 322 85.762500 952 1593 2 chr7B.!!$R1 641
8 TraesCS6D01G359300 chr7D 90597814 90598355 541 False 270.00 270 76.265000 1032 1598 1 chr7D.!!$F1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 2700 0.322975 CTGGAGATAATGGGGGCGAG 59.677 60.0 0.0 0.0 0.00 5.03 F
1543 4953 0.033405 TCTCCTAGTGGAACCCGAGG 60.033 60.0 0.0 0.0 42.66 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 5923 0.509929 GTTGTACCAGACGCCGTTTC 59.490 55.0 0.0 0.0 0.0 2.78 R
3146 7167 0.036010 CGATGCAGAGGTTGGAGGTT 60.036 55.0 0.0 0.0 0.0 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.679716 GGGCAGATGACAGGGCTT 59.320 61.111 0.00 0.00 0.00 4.35
51 52 4.207891 TGACAGGGCTTTAGAACTGATC 57.792 45.455 0.00 0.00 35.08 2.92
52 53 3.582647 TGACAGGGCTTTAGAACTGATCA 59.417 43.478 0.00 0.00 35.08 2.92
143 148 6.795098 AGTTCGTAAATGATAAGTGTTGCA 57.205 33.333 0.00 0.00 0.00 4.08
148 153 4.829064 AAATGATAAGTGTTGCACGTGT 57.171 36.364 18.38 0.00 39.64 4.49
167 172 3.987404 GCACGAAGCAATCCCACT 58.013 55.556 0.00 0.00 44.79 4.00
170 175 1.813513 CACGAAGCAATCCCACTCTT 58.186 50.000 0.00 0.00 0.00 2.85
199 204 5.705813 TTTACAACTAACACGTGACACAG 57.294 39.130 25.01 14.66 0.00 3.66
201 206 4.054780 ACAACTAACACGTGACACAGAT 57.945 40.909 25.01 5.09 0.00 2.90
287 682 5.358442 TGAAACCTGTCATCCGAAAAGAAAA 59.642 36.000 0.00 0.00 0.00 2.29
289 684 6.405278 AACCTGTCATCCGAAAAGAAAATT 57.595 33.333 0.00 0.00 0.00 1.82
291 686 5.301805 ACCTGTCATCCGAAAAGAAAATTGT 59.698 36.000 0.00 0.00 0.00 2.71
357 753 5.282055 AGAAGTTATCATCCTCGCATCAA 57.718 39.130 0.00 0.00 0.00 2.57
369 765 3.067180 CCTCGCATCAATAAACTTGCCAT 59.933 43.478 0.00 0.00 0.00 4.40
398 794 3.498397 ACATTCGGAGTTGTCATGTGTTC 59.502 43.478 0.00 0.00 0.00 3.18
402 798 2.479837 GGAGTTGTCATGTGTTCGTGA 58.520 47.619 0.00 0.00 37.27 4.35
425 821 2.626266 ACACGTGTGACACTTATCAGGA 59.374 45.455 22.71 0.00 31.34 3.86
434 830 8.421784 GTGTGACACTTATCAGGATCCTATAAA 58.578 37.037 15.67 7.75 0.00 1.40
528 956 0.510359 GGCAATTCAGCGAGATAGCG 59.490 55.000 0.00 0.00 43.00 4.26
530 958 1.858091 CAATTCAGCGAGATAGCGGT 58.142 50.000 0.00 0.00 43.48 5.68
639 2592 8.198109 TCTCTTGGACAGTTTATACAGATAAGC 58.802 37.037 0.00 0.00 0.00 3.09
642 2595 8.437360 TTGGACAGTTTATACAGATAAGCATG 57.563 34.615 0.00 0.00 32.65 4.06
719 2696 1.776667 TGAAGCTGGAGATAATGGGGG 59.223 52.381 0.00 0.00 0.00 5.40
720 2697 0.480252 AAGCTGGAGATAATGGGGGC 59.520 55.000 0.00 0.00 0.00 5.80
721 2698 1.302832 GCTGGAGATAATGGGGGCG 60.303 63.158 0.00 0.00 0.00 6.13
722 2699 1.768684 GCTGGAGATAATGGGGGCGA 61.769 60.000 0.00 0.00 0.00 5.54
723 2700 0.322975 CTGGAGATAATGGGGGCGAG 59.677 60.000 0.00 0.00 0.00 5.03
724 2701 1.127567 TGGAGATAATGGGGGCGAGG 61.128 60.000 0.00 0.00 0.00 4.63
725 2702 1.679898 GAGATAATGGGGGCGAGGG 59.320 63.158 0.00 0.00 0.00 4.30
750 2733 3.149196 TGAGGTTGGTGAGAGCATTTTC 58.851 45.455 0.00 0.00 0.00 2.29
751 2734 3.149196 GAGGTTGGTGAGAGCATTTTCA 58.851 45.455 0.00 0.00 0.00 2.69
769 2789 6.587206 TTTTCATGCATGGACTGTTTATGA 57.413 33.333 25.97 0.06 0.00 2.15
770 2790 6.587206 TTTCATGCATGGACTGTTTATGAA 57.413 33.333 25.97 6.85 33.79 2.57
1015 3078 2.754552 GCAACCATGGCTTCTTATGACA 59.245 45.455 13.04 0.00 0.00 3.58
1248 3311 1.982958 TGGGACCTCTTCCTGGTAAAC 59.017 52.381 0.00 0.00 45.09 2.01
1253 3327 4.041815 GGACCTCTTCCTGGTAAACTTCTT 59.958 45.833 0.00 0.00 41.95 2.52
1258 3332 6.546034 CCTCTTCCTGGTAAACTTCTTTTTGA 59.454 38.462 0.00 0.00 0.00 2.69
1543 4953 0.033405 TCTCCTAGTGGAACCCGAGG 60.033 60.000 0.00 0.00 42.66 4.63
1629 5053 7.661847 AGCTCTAGGTTTTTACCATATACATGC 59.338 37.037 0.00 0.00 0.00 4.06
1630 5054 7.444183 GCTCTAGGTTTTTACCATATACATGCA 59.556 37.037 0.00 0.00 0.00 3.96
1631 5055 8.671384 TCTAGGTTTTTACCATATACATGCAC 57.329 34.615 0.00 0.00 0.00 4.57
1633 5057 5.883673 AGGTTTTTACCATATACATGCACGT 59.116 36.000 0.00 0.00 0.00 4.49
1635 5059 4.804608 TTTACCATATACATGCACGTGC 57.195 40.909 33.11 33.11 42.50 5.34
1636 5060 2.620251 ACCATATACATGCACGTGCT 57.380 45.000 37.59 22.54 42.66 4.40
1638 5062 1.800586 CCATATACATGCACGTGCTCC 59.199 52.381 37.59 13.26 42.66 4.70
1861 5404 2.288666 CACCTGGTAAACATGATCGGG 58.711 52.381 0.00 0.00 0.00 5.14
1894 5437 7.017551 TCCATCACCCAAGCTATATTCAACTAT 59.982 37.037 0.00 0.00 0.00 2.12
1948 5491 2.145865 CCTCAAGGCCCATACCGAT 58.854 57.895 0.00 0.00 33.69 4.18
2001 5923 1.970352 GAGGGGCTCCAGCTTCAGAG 61.970 65.000 4.79 1.54 41.70 3.35
2045 5967 2.166050 CCCATCGTTCCAAATGCATTGA 59.834 45.455 13.82 3.84 41.85 2.57
2059 5981 5.947228 ATGCATTGATTATGAACGTAGGG 57.053 39.130 0.00 0.00 36.26 3.53
2075 5997 5.907421 ACGTAGGGGATATAATGGAGGTAA 58.093 41.667 0.00 0.00 0.00 2.85
2077 5999 6.383147 ACGTAGGGGATATAATGGAGGTAATG 59.617 42.308 0.00 0.00 0.00 1.90
2079 6001 6.642733 AGGGGATATAATGGAGGTAATGTG 57.357 41.667 0.00 0.00 0.00 3.21
2080 6002 5.492524 AGGGGATATAATGGAGGTAATGTGG 59.507 44.000 0.00 0.00 0.00 4.17
2081 6003 5.491078 GGGGATATAATGGAGGTAATGTGGA 59.509 44.000 0.00 0.00 0.00 4.02
2083 6005 7.312567 GGGGATATAATGGAGGTAATGTGGATT 60.313 40.741 0.00 0.00 0.00 3.01
2084 6006 8.778059 GGGATATAATGGAGGTAATGTGGATTA 58.222 37.037 0.00 0.00 0.00 1.75
2086 6008 9.331282 GATATAATGGAGGTAATGTGGATTAGC 57.669 37.037 0.00 0.00 41.15 3.09
2089 6011 3.780294 TGGAGGTAATGTGGATTAGCAGT 59.220 43.478 0.00 0.00 42.61 4.40
2090 6012 4.966168 TGGAGGTAATGTGGATTAGCAGTA 59.034 41.667 0.00 0.00 42.61 2.74
2092 6014 5.070580 GGAGGTAATGTGGATTAGCAGTAGT 59.929 44.000 0.00 0.00 42.61 2.73
2093 6015 6.267014 GGAGGTAATGTGGATTAGCAGTAGTA 59.733 42.308 0.00 0.00 42.61 1.82
2094 6016 7.201974 GGAGGTAATGTGGATTAGCAGTAGTAA 60.202 40.741 0.00 0.00 42.61 2.24
2095 6017 8.263854 AGGTAATGTGGATTAGCAGTAGTAAT 57.736 34.615 0.00 0.00 42.61 1.89
2097 6019 8.989980 GGTAATGTGGATTAGCAGTAGTAATTC 58.010 37.037 0.00 0.00 40.72 2.17
2098 6020 8.989980 GTAATGTGGATTAGCAGTAGTAATTCC 58.010 37.037 0.00 0.00 0.00 3.01
2099 6021 6.553953 TGTGGATTAGCAGTAGTAATTCCA 57.446 37.500 0.00 0.00 0.00 3.53
2100 6022 7.136822 TGTGGATTAGCAGTAGTAATTCCAT 57.863 36.000 0.00 0.00 0.00 3.41
2101 6023 6.992123 TGTGGATTAGCAGTAGTAATTCCATG 59.008 38.462 0.00 0.00 0.00 3.66
2102 6024 6.992715 GTGGATTAGCAGTAGTAATTCCATGT 59.007 38.462 0.00 0.00 0.00 3.21
2106 6030 4.446371 AGCAGTAGTAATTCCATGTGCTC 58.554 43.478 0.00 0.00 35.06 4.26
2110 6034 6.524734 CAGTAGTAATTCCATGTGCTCCATA 58.475 40.000 0.00 0.00 30.71 2.74
2141 6065 5.047021 TGTTTGACCTTGTTTTGTGGATTGA 60.047 36.000 0.00 0.00 0.00 2.57
2314 6245 2.029844 GCTTGAGCCGGTGTCAGAC 61.030 63.158 1.90 0.00 34.31 3.51
2667 6653 7.803279 AAGGATGGAATAAAACTTATCGGTC 57.197 36.000 0.00 0.00 0.00 4.79
2702 6688 3.303049 GGATGCAAAGGATGGAAGGATT 58.697 45.455 0.00 0.00 30.96 3.01
2713 6699 4.142293 GGATGGAAGGATTGTTTCTTGCTC 60.142 45.833 0.00 0.00 33.41 4.26
2718 6705 5.815740 GGAAGGATTGTTTCTTGCTCGTATA 59.184 40.000 0.00 0.00 0.00 1.47
2793 6804 4.686191 AAAAAGACCATTGTGCCATGAA 57.314 36.364 0.00 0.00 0.00 2.57
2794 6805 4.686191 AAAAGACCATTGTGCCATGAAA 57.314 36.364 0.00 0.00 0.00 2.69
2795 6806 4.686191 AAAGACCATTGTGCCATGAAAA 57.314 36.364 0.00 0.00 0.00 2.29
2796 6807 4.686191 AAGACCATTGTGCCATGAAAAA 57.314 36.364 0.00 0.00 0.00 1.94
2797 6808 4.895668 AGACCATTGTGCCATGAAAAAT 57.104 36.364 0.00 0.00 0.00 1.82
2810 6821 7.436080 GTGCCATGAAAAATATGTGGATTAGTG 59.564 37.037 0.00 0.00 31.59 2.74
2826 6837 9.787435 GTGGATTAGTGGTAATAATTCCATGTA 57.213 33.333 0.00 0.00 36.09 2.29
2886 6898 3.190535 GTGTCATCACTAACCGGCAAAAT 59.809 43.478 0.00 0.00 40.98 1.82
2897 6917 1.476488 CCGGCAAAATTTTCTCCCGAT 59.524 47.619 24.61 0.00 38.04 4.18
2921 6941 2.558795 GTGACCTGTCAGTAGCTTCTCA 59.441 50.000 0.00 0.00 40.75 3.27
2922 6942 2.558795 TGACCTGTCAGTAGCTTCTCAC 59.441 50.000 0.00 0.00 34.14 3.51
2924 6944 2.175202 CCTGTCAGTAGCTTCTCACCT 58.825 52.381 0.00 0.00 0.00 4.00
2951 6971 1.003580 ACTATGTTGGCACTGACCAGG 59.996 52.381 1.82 0.00 41.82 4.45
2972 6992 2.821546 CACAACAAAGTCTCTCACCGA 58.178 47.619 0.00 0.00 0.00 4.69
3013 7033 6.223852 TCAACAGAAGTATGTTCAGGAACTC 58.776 40.000 12.86 2.67 41.41 3.01
3014 7034 5.153950 ACAGAAGTATGTTCAGGAACTCC 57.846 43.478 12.86 1.99 41.67 3.85
3015 7035 5.308237 AACAGAAGTATGTTCAGGAACTCCT 59.692 40.000 12.86 0.00 39.13 3.69
3016 7036 5.308237 ACAGAAGTATGTTCAGGAACTCCTT 59.692 40.000 12.86 10.97 46.09 3.36
3017 7037 5.641209 CAGAAGTATGTTCAGGAACTCCTTG 59.359 44.000 12.86 0.00 46.09 3.61
3018 7038 5.544176 AGAAGTATGTTCAGGAACTCCTTGA 59.456 40.000 12.86 0.00 46.09 3.02
3019 7039 6.214412 AGAAGTATGTTCAGGAACTCCTTGAT 59.786 38.462 12.86 0.75 46.09 2.57
3020 7040 5.983540 AGTATGTTCAGGAACTCCTTGATC 58.016 41.667 12.86 0.00 46.09 2.92
3021 7041 4.916041 ATGTTCAGGAACTCCTTGATCA 57.084 40.909 12.86 0.00 46.09 2.92
3022 7042 4.916041 TGTTCAGGAACTCCTTGATCAT 57.084 40.909 12.86 0.00 46.09 2.45
3023 7043 5.246981 TGTTCAGGAACTCCTTGATCATT 57.753 39.130 12.86 0.00 46.09 2.57
3024 7044 5.248640 TGTTCAGGAACTCCTTGATCATTC 58.751 41.667 12.86 0.00 46.09 2.67
3025 7045 5.013495 TGTTCAGGAACTCCTTGATCATTCT 59.987 40.000 12.86 0.00 46.09 2.40
3026 7046 5.095145 TCAGGAACTCCTTGATCATTCTG 57.905 43.478 0.00 0.00 46.09 3.02
3027 7047 4.080695 TCAGGAACTCCTTGATCATTCTGG 60.081 45.833 0.00 0.00 46.09 3.86
3028 7048 3.848975 AGGAACTCCTTGATCATTCTGGT 59.151 43.478 0.00 0.00 46.09 4.00
3029 7049 4.080638 AGGAACTCCTTGATCATTCTGGTC 60.081 45.833 0.00 0.00 46.09 4.02
3030 7050 4.080638 GGAACTCCTTGATCATTCTGGTCT 60.081 45.833 0.00 0.00 0.00 3.85
3031 7051 5.495640 GAACTCCTTGATCATTCTGGTCTT 58.504 41.667 0.00 0.00 0.00 3.01
3032 7052 6.352222 GGAACTCCTTGATCATTCTGGTCTTA 60.352 42.308 0.00 0.00 0.00 2.10
3033 7053 6.627087 ACTCCTTGATCATTCTGGTCTTAA 57.373 37.500 0.00 0.00 0.00 1.85
3034 7054 7.205515 ACTCCTTGATCATTCTGGTCTTAAT 57.794 36.000 0.00 0.00 0.00 1.40
3035 7055 7.052873 ACTCCTTGATCATTCTGGTCTTAATG 58.947 38.462 0.00 0.00 34.96 1.90
3036 7056 7.092712 ACTCCTTGATCATTCTGGTCTTAATGA 60.093 37.037 0.00 0.00 44.00 2.57
3037 7057 7.278135 TCCTTGATCATTCTGGTCTTAATGAG 58.722 38.462 0.00 0.00 43.34 2.90
3038 7058 6.485984 CCTTGATCATTCTGGTCTTAATGAGG 59.514 42.308 0.00 0.00 43.34 3.86
3039 7059 5.371526 TGATCATTCTGGTCTTAATGAGGC 58.628 41.667 0.00 0.00 43.34 4.70
3040 7060 5.131642 TGATCATTCTGGTCTTAATGAGGCT 59.868 40.000 0.00 0.00 43.34 4.58
3041 7061 5.028549 TCATTCTGGTCTTAATGAGGCTC 57.971 43.478 7.79 7.79 37.23 4.70
3042 7062 3.526931 TTCTGGTCTTAATGAGGCTCG 57.473 47.619 10.42 0.00 0.00 5.03
3043 7063 1.137086 TCTGGTCTTAATGAGGCTCGC 59.863 52.381 10.42 0.00 0.00 5.03
3044 7064 0.901827 TGGTCTTAATGAGGCTCGCA 59.098 50.000 10.42 0.00 0.00 5.10
3045 7065 1.486310 TGGTCTTAATGAGGCTCGCAT 59.514 47.619 10.42 0.78 0.00 4.73
3046 7066 2.092968 TGGTCTTAATGAGGCTCGCATT 60.093 45.455 10.42 8.26 37.59 3.56
3047 7067 2.289002 GGTCTTAATGAGGCTCGCATTG 59.711 50.000 10.42 0.28 34.96 2.82
3048 7068 1.942657 TCTTAATGAGGCTCGCATTGC 59.057 47.619 10.42 0.00 34.96 3.56
3049 7069 1.945394 CTTAATGAGGCTCGCATTGCT 59.055 47.619 10.42 0.00 34.96 3.91
3050 7070 1.302366 TAATGAGGCTCGCATTGCTG 58.698 50.000 10.42 0.70 34.96 4.41
3051 7071 0.393402 AATGAGGCTCGCATTGCTGA 60.393 50.000 10.42 5.18 33.03 4.26
3052 7072 0.393402 ATGAGGCTCGCATTGCTGAA 60.393 50.000 10.42 0.00 0.00 3.02
3053 7073 0.606130 TGAGGCTCGCATTGCTGAAA 60.606 50.000 10.42 0.00 0.00 2.69
3054 7074 0.179179 GAGGCTCGCATTGCTGAAAC 60.179 55.000 7.12 2.46 0.00 2.78
3055 7075 0.607489 AGGCTCGCATTGCTGAAACT 60.607 50.000 7.12 4.45 0.00 2.66
3066 7086 5.562307 GCATTGCTGAAACTCCTATATGCAG 60.562 44.000 0.16 0.00 36.70 4.41
3069 7089 3.062763 CTGAAACTCCTATATGCAGCCG 58.937 50.000 0.00 0.00 0.00 5.52
3102 7122 1.000283 CGTGCTACTGATGGAGATCCC 60.000 57.143 0.00 0.00 34.29 3.85
3103 7123 1.000283 GTGCTACTGATGGAGATCCCG 60.000 57.143 0.00 0.00 37.93 5.14
3161 7182 2.333688 GGATAACCTCCAACCTCTGC 57.666 55.000 0.00 0.00 44.26 4.26
3162 7183 1.559682 GGATAACCTCCAACCTCTGCA 59.440 52.381 0.00 0.00 44.26 4.41
3163 7184 2.173569 GGATAACCTCCAACCTCTGCAT 59.826 50.000 0.00 0.00 44.26 3.96
3164 7185 3.471680 GATAACCTCCAACCTCTGCATC 58.528 50.000 0.00 0.00 0.00 3.91
3165 7186 0.036010 AACCTCCAACCTCTGCATCG 60.036 55.000 0.00 0.00 0.00 3.84
3166 7187 0.904865 ACCTCCAACCTCTGCATCGA 60.905 55.000 0.00 0.00 0.00 3.59
3167 7188 0.179089 CCTCCAACCTCTGCATCGAG 60.179 60.000 0.00 0.00 0.00 4.04
3168 7189 0.809241 CTCCAACCTCTGCATCGAGC 60.809 60.000 0.00 0.00 45.96 5.03
3178 7199 3.784746 CATCGAGCGATGCACACA 58.215 55.556 18.40 0.00 44.27 3.72
3179 7200 2.304428 CATCGAGCGATGCACACAT 58.696 52.632 18.40 0.00 44.27 3.21
3194 7215 8.249327 GATGCACACATCCATCTTTATAGTAG 57.751 38.462 0.00 0.00 45.94 2.57
3195 7216 7.360113 TGCACACATCCATCTTTATAGTAGA 57.640 36.000 0.00 0.00 0.00 2.59
3196 7217 7.210174 TGCACACATCCATCTTTATAGTAGAC 58.790 38.462 0.00 0.00 0.00 2.59
3197 7218 7.069950 TGCACACATCCATCTTTATAGTAGACT 59.930 37.037 0.00 0.00 0.00 3.24
3198 7219 8.577296 GCACACATCCATCTTTATAGTAGACTA 58.423 37.037 0.00 0.00 0.00 2.59
3243 7264 9.987272 CATCACATTAAGGATATAGTTCTCACA 57.013 33.333 0.00 0.00 0.00 3.58
3266 7287 8.028354 CACATCATAATAACAAGACCAAAGCAA 58.972 33.333 0.00 0.00 0.00 3.91
3267 7288 8.246180 ACATCATAATAACAAGACCAAAGCAAG 58.754 33.333 0.00 0.00 0.00 4.01
3317 7338 3.392616 CCCAATACCATCTACAAGAGGCT 59.607 47.826 0.00 0.00 0.00 4.58
3323 7344 3.300388 CCATCTACAAGAGGCTCCAGTA 58.700 50.000 11.71 13.02 0.00 2.74
3346 7367 4.832266 ACAAACCAAAGGCTTATCACATCA 59.168 37.500 0.00 0.00 0.00 3.07
3416 7437 4.894201 GAGGGCTCCACATGGATG 57.106 61.111 0.00 0.00 44.46 3.51
3421 7442 0.394762 GGCTCCACATGGATGAAGCA 60.395 55.000 0.00 0.00 44.46 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 82 6.793505 AACTTCCTCTCTATTAACACGGAT 57.206 37.500 0.00 0.00 0.00 4.18
148 153 1.971167 GTGGGATTGCTTCGTGCCA 60.971 57.895 1.30 0.00 42.00 4.92
187 192 3.667497 AGATTGATCTGTGTCACGTGT 57.333 42.857 16.51 0.00 35.42 4.49
189 194 3.995199 ACAAGATTGATCTGTGTCACGT 58.005 40.909 0.00 0.00 37.19 4.49
190 195 4.687948 AGAACAAGATTGATCTGTGTCACG 59.312 41.667 4.73 0.00 38.64 4.35
269 664 6.437928 TGACAATTTTCTTTTCGGATGACAG 58.562 36.000 0.00 0.00 0.00 3.51
304 699 2.599082 GACGCGAGGATGACAACTTTAG 59.401 50.000 15.93 0.00 0.00 1.85
336 731 7.658179 TTATTGATGCGAGGATGATAACTTC 57.342 36.000 0.00 0.00 0.00 3.01
342 738 5.278169 GCAAGTTTATTGATGCGAGGATGAT 60.278 40.000 0.00 0.00 0.00 2.45
375 771 3.476552 ACACATGACAACTCCGAATGTT 58.523 40.909 0.00 0.00 29.20 2.71
376 772 3.126001 ACACATGACAACTCCGAATGT 57.874 42.857 0.00 0.00 31.79 2.71
377 773 3.423515 CGAACACATGACAACTCCGAATG 60.424 47.826 0.00 0.00 0.00 2.67
378 774 2.736721 CGAACACATGACAACTCCGAAT 59.263 45.455 0.00 0.00 0.00 3.34
383 779 3.505449 GTCACGAACACATGACAACTC 57.495 47.619 0.00 0.00 43.89 3.01
402 798 3.381045 CTGATAAGTGTCACACGTGTGT 58.619 45.455 39.25 26.22 45.76 3.72
528 956 7.173390 AGAGTAAAGAAGTACAATCTTTGCACC 59.827 37.037 27.52 21.79 45.90 5.01
530 958 8.677148 AAGAGTAAAGAAGTACAATCTTTGCA 57.323 30.769 27.52 14.13 45.90 4.08
642 2595 7.916450 GCCAGTCGTTAGATAGAATCCATATAC 59.084 40.741 0.00 0.00 0.00 1.47
655 2614 3.954904 ACTGATGTAGCCAGTCGTTAGAT 59.045 43.478 0.00 0.00 40.55 1.98
656 2615 3.353557 ACTGATGTAGCCAGTCGTTAGA 58.646 45.455 0.00 0.00 40.55 2.10
719 2696 2.892425 CAACCTCATCGCCCTCGC 60.892 66.667 0.00 0.00 35.26 5.03
720 2697 2.202932 CCAACCTCATCGCCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
721 2698 1.450312 CACCAACCTCATCGCCCTC 60.450 63.158 0.00 0.00 0.00 4.30
722 2699 1.903877 CTCACCAACCTCATCGCCCT 61.904 60.000 0.00 0.00 0.00 5.19
723 2700 1.450312 CTCACCAACCTCATCGCCC 60.450 63.158 0.00 0.00 0.00 6.13
724 2701 0.460987 CTCTCACCAACCTCATCGCC 60.461 60.000 0.00 0.00 0.00 5.54
725 2702 1.086634 GCTCTCACCAACCTCATCGC 61.087 60.000 0.00 0.00 0.00 4.58
835 2856 9.378551 CACTATTCCACTTAACTAATGCAACTA 57.621 33.333 0.00 0.00 0.00 2.24
1015 3078 4.461198 ACCTCGAGAACCTTGAATTGTTT 58.539 39.130 15.71 0.00 0.00 2.83
1253 3327 9.650539 TCACATGAAAGAAATGAAAACTCAAAA 57.349 25.926 0.00 0.00 0.00 2.44
1287 4068 3.093057 TGAGATGACCACTAGCTGTCT 57.907 47.619 12.06 0.00 32.67 3.41
1288 4069 3.636300 AGATGAGATGACCACTAGCTGTC 59.364 47.826 0.00 5.50 0.00 3.51
1289 4070 3.636300 GAGATGAGATGACCACTAGCTGT 59.364 47.826 0.00 0.00 0.00 4.40
1290 4071 3.005684 GGAGATGAGATGACCACTAGCTG 59.994 52.174 0.00 0.00 0.00 4.24
1543 4953 2.832733 ACAGTCTGTAGGTTCTTAGGGC 59.167 50.000 2.87 0.00 0.00 5.19
1629 5053 2.238942 TAGGCATTATGGAGCACGTG 57.761 50.000 12.28 12.28 0.00 4.49
1630 5054 3.206150 CTTTAGGCATTATGGAGCACGT 58.794 45.455 0.00 0.00 0.00 4.49
1631 5055 2.031682 GCTTTAGGCATTATGGAGCACG 60.032 50.000 0.00 0.00 41.35 5.34
1633 5057 2.158827 TCGCTTTAGGCATTATGGAGCA 60.159 45.455 0.00 0.00 41.91 4.26
1635 5059 3.466836 TGTCGCTTTAGGCATTATGGAG 58.533 45.455 0.00 0.00 41.91 3.86
1636 5060 3.552132 TGTCGCTTTAGGCATTATGGA 57.448 42.857 0.00 0.00 41.91 3.41
1638 5062 6.974932 ATAGATGTCGCTTTAGGCATTATG 57.025 37.500 0.00 0.00 36.47 1.90
1690 5226 2.000447 GTTACTCATCAACTGCCGGAC 59.000 52.381 5.05 0.00 0.00 4.79
1861 5404 1.680249 GCTTGGGTGATGGAGTTCTCC 60.680 57.143 11.53 11.53 0.00 3.71
1894 5437 0.690762 GCCTTGGACACTGAGGGTAA 59.309 55.000 0.00 0.00 0.00 2.85
1948 5491 3.264193 AGTTGACTGTGATTATGGAGCCA 59.736 43.478 0.00 0.00 0.00 4.75
2001 5923 0.509929 GTTGTACCAGACGCCGTTTC 59.490 55.000 0.00 0.00 0.00 2.78
2045 5967 8.618240 TCCATTATATCCCCTACGTTCATAAT 57.382 34.615 0.00 0.00 0.00 1.28
2059 5981 9.838339 CTAATCCACATTACCTCCATTATATCC 57.162 37.037 0.00 0.00 0.00 2.59
2075 5997 7.136822 TGGAATTACTACTGCTAATCCACAT 57.863 36.000 0.00 0.00 0.00 3.21
2077 5999 6.992715 ACATGGAATTACTACTGCTAATCCAC 59.007 38.462 0.00 0.00 0.00 4.02
2079 6001 6.073003 GCACATGGAATTACTACTGCTAATCC 60.073 42.308 0.00 0.00 0.00 3.01
2080 6002 6.708054 AGCACATGGAATTACTACTGCTAATC 59.292 38.462 0.00 0.00 32.03 1.75
2081 6003 6.595682 AGCACATGGAATTACTACTGCTAAT 58.404 36.000 0.00 0.00 32.03 1.73
2083 6005 5.453339 GGAGCACATGGAATTACTACTGCTA 60.453 44.000 6.54 0.00 33.93 3.49
2084 6006 4.446371 GAGCACATGGAATTACTACTGCT 58.554 43.478 6.32 6.32 36.45 4.24
2086 6008 4.769688 TGGAGCACATGGAATTACTACTG 58.230 43.478 0.00 0.00 0.00 2.74
2093 6015 9.537852 ACAATTATATATGGAGCACATGGAATT 57.462 29.630 0.00 2.98 40.82 2.17
2094 6016 9.537852 AACAATTATATATGGAGCACATGGAAT 57.462 29.630 0.00 0.00 40.82 3.01
2095 6017 8.938801 AACAATTATATATGGAGCACATGGAA 57.061 30.769 0.00 0.00 40.82 3.53
2097 6019 8.795513 TCAAACAATTATATATGGAGCACATGG 58.204 33.333 0.00 0.00 40.82 3.66
2098 6020 9.616634 GTCAAACAATTATATATGGAGCACATG 57.383 33.333 4.37 0.00 40.82 3.21
2099 6021 8.796475 GGTCAAACAATTATATATGGAGCACAT 58.204 33.333 0.00 0.00 43.68 3.21
2100 6022 7.998383 AGGTCAAACAATTATATATGGAGCACA 59.002 33.333 0.00 0.00 0.00 4.57
2101 6023 8.396272 AGGTCAAACAATTATATATGGAGCAC 57.604 34.615 0.00 0.00 0.00 4.40
2102 6024 8.849168 CAAGGTCAAACAATTATATATGGAGCA 58.151 33.333 0.00 0.00 0.00 4.26
2110 6034 9.487790 CCACAAAACAAGGTCAAACAATTATAT 57.512 29.630 0.00 0.00 0.00 0.86
2314 6245 1.065854 GGTCTCTTGTCATCCACCAGG 60.066 57.143 0.00 0.00 0.00 4.45
2523 6458 5.497464 AAAATTGGGGAAAAGGGTACATG 57.503 39.130 0.00 0.00 0.00 3.21
2636 6577 7.486407 AAGTTTTATTCCATCCTTTGCATCT 57.514 32.000 0.00 0.00 0.00 2.90
2667 6653 1.512522 CATCCGCATGTTGCACACG 60.513 57.895 0.00 0.00 45.36 4.49
2702 6688 7.050970 AGGTGATATATACGAGCAAGAAACA 57.949 36.000 0.00 0.00 0.00 2.83
2741 6728 8.877601 TTCATGAAAATGAGGCACAATGGTACA 61.878 37.037 5.45 0.00 35.40 2.90
2784 6795 7.436080 CACTAATCCACATATTTTTCATGGCAC 59.564 37.037 0.00 0.00 0.00 5.01
2785 6796 7.417683 CCACTAATCCACATATTTTTCATGGCA 60.418 37.037 0.00 0.00 0.00 4.92
2786 6797 6.925165 CCACTAATCCACATATTTTTCATGGC 59.075 38.462 0.00 0.00 0.00 4.40
2787 6798 8.010733 ACCACTAATCCACATATTTTTCATGG 57.989 34.615 0.00 0.00 0.00 3.66
2810 6821 9.628500 AGGAAAGAAGTACATGGAATTATTACC 57.372 33.333 0.00 0.00 0.00 2.85
2826 6837 7.391833 GTGGATGTCTATTTTCAGGAAAGAAGT 59.608 37.037 0.00 0.00 0.00 3.01
2886 6898 0.248289 GGTCACCGATCGGGAGAAAA 59.752 55.000 35.87 12.91 45.37 2.29
2897 6917 0.251209 AGCTACTGACAGGTCACCGA 60.251 55.000 7.51 0.00 35.46 4.69
2921 6941 2.305635 TGCCAACATAGTCATCACAGGT 59.694 45.455 0.00 0.00 0.00 4.00
2922 6942 2.679837 GTGCCAACATAGTCATCACAGG 59.320 50.000 0.00 0.00 0.00 4.00
2924 6944 3.007831 TCAGTGCCAACATAGTCATCACA 59.992 43.478 0.00 0.00 0.00 3.58
2951 6971 1.261619 CGGTGAGAGACTTTGTTGTGC 59.738 52.381 0.00 0.00 0.00 4.57
2983 7003 5.541845 TGAACATACTTCTGTTGAGGACTG 58.458 41.667 0.00 0.00 39.40 3.51
3013 7033 6.485984 CCTCATTAAGACCAGAATGATCAAGG 59.514 42.308 0.00 2.29 40.38 3.61
3014 7034 6.017275 GCCTCATTAAGACCAGAATGATCAAG 60.017 42.308 0.00 0.00 40.38 3.02
3015 7035 5.824624 GCCTCATTAAGACCAGAATGATCAA 59.175 40.000 0.00 0.00 40.38 2.57
3016 7036 5.131642 AGCCTCATTAAGACCAGAATGATCA 59.868 40.000 0.00 0.00 40.38 2.92
3017 7037 5.619220 AGCCTCATTAAGACCAGAATGATC 58.381 41.667 0.00 0.00 40.38 2.92
3018 7038 5.619220 GAGCCTCATTAAGACCAGAATGAT 58.381 41.667 0.00 0.00 40.38 2.45
3019 7039 4.442052 CGAGCCTCATTAAGACCAGAATGA 60.442 45.833 0.00 0.00 39.69 2.57
3020 7040 3.806521 CGAGCCTCATTAAGACCAGAATG 59.193 47.826 0.00 0.00 34.89 2.67
3021 7041 3.742640 GCGAGCCTCATTAAGACCAGAAT 60.743 47.826 0.00 0.00 0.00 2.40
3022 7042 2.418746 GCGAGCCTCATTAAGACCAGAA 60.419 50.000 0.00 0.00 0.00 3.02
3023 7043 1.137086 GCGAGCCTCATTAAGACCAGA 59.863 52.381 0.00 0.00 0.00 3.86
3024 7044 1.134699 TGCGAGCCTCATTAAGACCAG 60.135 52.381 0.00 0.00 0.00 4.00
3025 7045 0.901827 TGCGAGCCTCATTAAGACCA 59.098 50.000 0.00 0.00 0.00 4.02
3026 7046 2.246719 ATGCGAGCCTCATTAAGACC 57.753 50.000 0.00 0.00 0.00 3.85
3027 7047 2.286654 GCAATGCGAGCCTCATTAAGAC 60.287 50.000 0.00 0.00 33.27 3.01
3028 7048 1.942657 GCAATGCGAGCCTCATTAAGA 59.057 47.619 0.00 0.00 33.27 2.10
3029 7049 1.945394 AGCAATGCGAGCCTCATTAAG 59.055 47.619 0.00 0.00 33.27 1.85
3030 7050 1.672363 CAGCAATGCGAGCCTCATTAA 59.328 47.619 0.00 0.00 33.27 1.40
3031 7051 1.134431 TCAGCAATGCGAGCCTCATTA 60.134 47.619 0.00 0.00 33.27 1.90
3032 7052 0.393402 TCAGCAATGCGAGCCTCATT 60.393 50.000 0.00 0.00 34.74 2.57
3033 7053 0.393402 TTCAGCAATGCGAGCCTCAT 60.393 50.000 0.00 0.00 0.00 2.90
3034 7054 0.606130 TTTCAGCAATGCGAGCCTCA 60.606 50.000 0.00 0.00 0.00 3.86
3035 7055 0.179179 GTTTCAGCAATGCGAGCCTC 60.179 55.000 0.00 0.00 0.00 4.70
3036 7056 0.607489 AGTTTCAGCAATGCGAGCCT 60.607 50.000 0.00 0.00 0.00 4.58
3037 7057 0.179179 GAGTTTCAGCAATGCGAGCC 60.179 55.000 0.00 0.00 0.00 4.70
3038 7058 0.179179 GGAGTTTCAGCAATGCGAGC 60.179 55.000 0.00 0.00 0.00 5.03
3039 7059 1.446907 AGGAGTTTCAGCAATGCGAG 58.553 50.000 0.00 0.00 0.00 5.03
3040 7060 2.760634 TAGGAGTTTCAGCAATGCGA 57.239 45.000 0.00 0.00 0.00 5.10
3041 7061 4.612259 GCATATAGGAGTTTCAGCAATGCG 60.612 45.833 0.00 0.00 0.00 4.73
3042 7062 4.276678 TGCATATAGGAGTTTCAGCAATGC 59.723 41.667 0.00 0.00 38.10 3.56
3043 7063 5.562307 GCTGCATATAGGAGTTTCAGCAATG 60.562 44.000 8.46 0.00 43.32 2.82
3044 7064 4.518211 GCTGCATATAGGAGTTTCAGCAAT 59.482 41.667 8.46 0.00 43.32 3.56
3045 7065 3.879295 GCTGCATATAGGAGTTTCAGCAA 59.121 43.478 8.46 0.00 43.32 3.91
3046 7066 3.470709 GCTGCATATAGGAGTTTCAGCA 58.529 45.455 8.46 0.00 43.32 4.41
3047 7067 2.810852 GGCTGCATATAGGAGTTTCAGC 59.189 50.000 0.50 5.66 43.17 4.26
3048 7068 3.062763 CGGCTGCATATAGGAGTTTCAG 58.937 50.000 0.50 0.00 38.09 3.02
3049 7069 2.434336 ACGGCTGCATATAGGAGTTTCA 59.566 45.455 0.50 0.00 38.09 2.69
3050 7070 3.113260 ACGGCTGCATATAGGAGTTTC 57.887 47.619 0.50 0.00 38.09 2.78
3051 7071 3.555168 GCTACGGCTGCATATAGGAGTTT 60.555 47.826 0.50 0.00 38.09 2.66
3052 7072 2.028930 GCTACGGCTGCATATAGGAGTT 60.029 50.000 0.50 0.00 38.09 3.01
3053 7073 1.546476 GCTACGGCTGCATATAGGAGT 59.454 52.381 0.50 0.00 38.09 3.85
3054 7074 2.285827 GCTACGGCTGCATATAGGAG 57.714 55.000 0.50 0.00 38.96 3.69
3090 7110 2.174685 TTTCCTCGGGATCTCCATCA 57.825 50.000 0.00 0.00 37.91 3.07
3143 7164 3.471680 GATGCAGAGGTTGGAGGTTATC 58.528 50.000 0.00 0.00 0.00 1.75
3145 7166 1.207089 CGATGCAGAGGTTGGAGGTTA 59.793 52.381 0.00 0.00 0.00 2.85
3146 7167 0.036010 CGATGCAGAGGTTGGAGGTT 60.036 55.000 0.00 0.00 0.00 3.50
3147 7168 0.904865 TCGATGCAGAGGTTGGAGGT 60.905 55.000 0.00 0.00 0.00 3.85
3148 7169 0.179089 CTCGATGCAGAGGTTGGAGG 60.179 60.000 0.00 0.00 34.74 4.30
3149 7170 0.809241 GCTCGATGCAGAGGTTGGAG 60.809 60.000 5.23 0.00 42.31 3.86
3150 7171 1.219124 GCTCGATGCAGAGGTTGGA 59.781 57.895 5.23 0.00 42.31 3.53
3151 7172 2.169789 CGCTCGATGCAGAGGTTGG 61.170 63.158 5.23 0.00 43.06 3.77
3152 7173 0.529337 ATCGCTCGATGCAGAGGTTG 60.529 55.000 3.76 0.00 43.06 3.77
3153 7174 0.529337 CATCGCTCGATGCAGAGGTT 60.529 55.000 17.66 0.00 44.27 3.50
3154 7175 1.067084 CATCGCTCGATGCAGAGGT 59.933 57.895 17.66 0.00 44.27 3.85
3155 7176 3.933742 CATCGCTCGATGCAGAGG 58.066 61.111 17.66 0.00 44.27 3.69
3162 7183 2.598045 GATGTGTGCATCGCTCGAT 58.402 52.632 0.00 0.00 41.60 3.59
3163 7184 4.093115 GATGTGTGCATCGCTCGA 57.907 55.556 0.00 0.00 41.60 4.04
3170 7191 7.875041 GTCTACTATAAAGATGGATGTGTGCAT 59.125 37.037 0.00 0.00 39.30 3.96
3171 7192 7.069950 AGTCTACTATAAAGATGGATGTGTGCA 59.930 37.037 0.00 0.00 0.00 4.57
3172 7193 7.437748 AGTCTACTATAAAGATGGATGTGTGC 58.562 38.462 0.00 0.00 0.00 4.57
3216 7237 9.429359 GTGAGAACTATATCCTTAATGTGATGG 57.571 37.037 0.00 0.00 0.00 3.51
3220 7241 9.987272 TGATGTGAGAACTATATCCTTAATGTG 57.013 33.333 0.00 0.00 0.00 3.21
3235 7256 8.492673 TGGTCTTGTTATTATGATGTGAGAAC 57.507 34.615 0.00 0.00 0.00 3.01
3243 7264 7.260603 GCTTGCTTTGGTCTTGTTATTATGAT 58.739 34.615 0.00 0.00 0.00 2.45
3250 7271 2.566913 TCGCTTGCTTTGGTCTTGTTA 58.433 42.857 0.00 0.00 0.00 2.41
3256 7277 0.668535 ACCTTTCGCTTGCTTTGGTC 59.331 50.000 0.00 0.00 0.00 4.02
3266 7287 3.439129 GCAAATGGTACTAACCTTTCGCT 59.561 43.478 0.00 0.00 46.91 4.93
3267 7288 3.189702 TGCAAATGGTACTAACCTTTCGC 59.810 43.478 0.00 0.53 46.91 4.70
3285 7306 1.649321 TGGTATTGGGCCATTTGCAA 58.351 45.000 7.26 0.00 43.89 4.08
3287 7308 2.041701 AGATGGTATTGGGCCATTTGC 58.958 47.619 7.26 1.25 45.87 3.68
3317 7338 3.306472 AAGCCTTTGGTTTGTACTGGA 57.694 42.857 0.00 0.00 0.00 3.86
3323 7344 4.832266 TGATGTGATAAGCCTTTGGTTTGT 59.168 37.500 0.00 0.00 33.46 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.