Multiple sequence alignment - TraesCS6D01G359000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G359000 chr6D 100.000 5390 0 0 1 5390 451749265 451754654 0.000000e+00 9954.0
1 TraesCS6D01G359000 chr6D 95.376 519 23 1 4872 5390 379008902 379009419 0.000000e+00 824.0
2 TraesCS6D01G359000 chr6D 95.202 521 24 1 4871 5390 449777033 449777553 0.000000e+00 822.0
3 TraesCS6D01G359000 chr6D 88.462 156 17 1 405 560 451749529 451749683 2.560000e-43 187.0
4 TraesCS6D01G359000 chr6D 88.462 156 17 1 265 419 451749669 451749824 2.560000e-43 187.0
5 TraesCS6D01G359000 chr6A 92.330 4120 218 50 810 4877 597034343 597030270 0.000000e+00 5768.0
6 TraesCS6D01G359000 chr6A 83.333 672 72 25 3546 4184 597029289 597028625 7.780000e-163 584.0
7 TraesCS6D01G359000 chr6A 88.235 425 42 6 1 420 597038168 597037747 8.060000e-138 501.0
8 TraesCS6D01G359000 chr6A 86.902 397 51 1 4183 4578 597028662 597028266 1.380000e-120 444.0
9 TraesCS6D01G359000 chr6A 83.738 412 44 8 408 797 597037900 597037490 8.530000e-98 368.0
10 TraesCS6D01G359000 chr6B 93.098 2347 119 19 1902 4223 685633298 685630970 0.000000e+00 3397.0
11 TraesCS6D01G359000 chr6B 89.245 1060 60 26 599 1628 685634340 685633305 0.000000e+00 1277.0
12 TraesCS6D01G359000 chr6B 84.871 542 57 11 4147 4684 685631010 685630490 1.720000e-144 523.0
13 TraesCS6D01G359000 chr6B 93.333 90 2 2 4788 4877 685630483 685630398 4.380000e-26 130.0
14 TraesCS6D01G359000 chr6B 92.105 38 3 0 4147 4184 685630974 685630937 3.000000e-03 54.7
15 TraesCS6D01G359000 chr2B 96.332 518 19 0 4873 5390 168841104 168841621 0.000000e+00 852.0
16 TraesCS6D01G359000 chr1D 96.124 516 17 2 4877 5390 225406406 225406920 0.000000e+00 839.0
17 TraesCS6D01G359000 chr1D 95.393 521 20 2 4870 5390 328879142 328878626 0.000000e+00 826.0
18 TraesCS6D01G359000 chr7A 95.922 515 20 1 4877 5390 466206951 466206437 0.000000e+00 833.0
19 TraesCS6D01G359000 chr5D 95.560 518 22 1 4873 5390 422940816 422940300 0.000000e+00 828.0
20 TraesCS6D01G359000 chr5D 95.728 515 19 1 4876 5390 254524739 254524228 0.000000e+00 826.0
21 TraesCS6D01G359000 chr7D 95.543 516 22 1 4875 5390 264303322 264303836 0.000000e+00 824.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G359000 chr6D 451749265 451754654 5389 False 9954.00 9954 100.0000 1 5390 1 chr6D.!!$F3 5389
1 TraesCS6D01G359000 chr6D 379008902 379009419 517 False 824.00 824 95.3760 4872 5390 1 chr6D.!!$F1 518
2 TraesCS6D01G359000 chr6D 449777033 449777553 520 False 822.00 822 95.2020 4871 5390 1 chr6D.!!$F2 519
3 TraesCS6D01G359000 chr6A 597028266 597038168 9902 True 1533.00 5768 86.9076 1 4877 5 chr6A.!!$R1 4876
4 TraesCS6D01G359000 chr6B 685630398 685634340 3942 True 1076.34 3397 90.5304 599 4877 5 chr6B.!!$R1 4278
5 TraesCS6D01G359000 chr2B 168841104 168841621 517 False 852.00 852 96.3320 4873 5390 1 chr2B.!!$F1 517
6 TraesCS6D01G359000 chr1D 225406406 225406920 514 False 839.00 839 96.1240 4877 5390 1 chr1D.!!$F1 513
7 TraesCS6D01G359000 chr1D 328878626 328879142 516 True 826.00 826 95.3930 4870 5390 1 chr1D.!!$R1 520
8 TraesCS6D01G359000 chr7A 466206437 466206951 514 True 833.00 833 95.9220 4877 5390 1 chr7A.!!$R1 513
9 TraesCS6D01G359000 chr5D 422940300 422940816 516 True 828.00 828 95.5600 4873 5390 1 chr5D.!!$R2 517
10 TraesCS6D01G359000 chr5D 254524228 254524739 511 True 826.00 826 95.7280 4876 5390 1 chr5D.!!$R1 514
11 TraesCS6D01G359000 chr7D 264303322 264303836 514 False 824.00 824 95.5430 4875 5390 1 chr7D.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 548 0.027848 GGCGTGACTAGCTCGTAGAC 59.972 60.000 0.00 0.00 36.00 2.59 F
1093 4243 0.031314 CGATCTCTGCAGGTGCGTAT 59.969 55.000 15.13 0.00 45.83 3.06 F
1731 4888 0.037326 CTAGGTCGGAACAGCAGCAA 60.037 55.000 0.00 0.00 0.00 3.91 F
1732 4889 0.320421 TAGGTCGGAACAGCAGCAAC 60.320 55.000 0.00 0.00 0.00 4.17 F
1784 4941 1.403493 CAGCGCGTCTGATATCAGTC 58.597 55.000 27.80 22.32 45.72 3.51 F
3857 7039 1.825474 ACATTCCTGAGTACCCACGAG 59.175 52.381 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 4592 0.167470 TGTCGGAGTTAGCGACGAAG 59.833 55.000 0.00 0.0 37.08 3.79 R
3091 6266 1.065854 ACATAGTGCCACTTCTCAGCC 60.066 52.381 1.02 0.0 0.00 4.85 R
3701 6883 0.758685 CCCTGGGACAAGCAAAACCA 60.759 55.000 7.01 0.0 38.70 3.67 R
3725 6907 4.083643 CGATGTGTGCCTATCCATGATTTC 60.084 45.833 0.00 0.0 0.00 2.17 R
3885 7067 4.336280 AGAGAACAGGGCTTGGTAAATTC 58.664 43.478 0.44 0.0 0.00 2.17 R
4913 8154 0.746563 CCTGTGTCGGTGTTGGTTGT 60.747 55.000 0.00 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 28 4.668636 ACTAGTATAGGGAGATGTGGCTC 58.331 47.826 0.00 0.00 44.97 4.70
28 31 2.783379 ATAGGGAGATGTGGCTCAGA 57.217 50.000 0.00 0.00 36.62 3.27
34 37 0.339859 AGATGTGGCTCAGAGGGGTA 59.660 55.000 0.00 0.00 0.00 3.69
45 48 2.863238 TCAGAGGGGTAGGGTTCTATGA 59.137 50.000 0.00 0.00 0.00 2.15
46 49 2.966516 CAGAGGGGTAGGGTTCTATGAC 59.033 54.545 0.00 0.00 0.00 3.06
73 76 4.317839 CCAATCGACTTTAAATAGCCGACG 60.318 45.833 0.00 0.00 0.00 5.12
105 108 1.071019 GAGCGACGACTTGAATGCGA 61.071 55.000 0.00 0.00 0.00 5.10
111 114 2.046892 ACTTGAATGCGAGCGCCT 60.047 55.556 12.70 0.00 41.09 5.52
112 115 2.301902 GACTTGAATGCGAGCGCCTG 62.302 60.000 12.70 0.00 41.09 4.85
139 142 0.719465 CTTATCGTTCACCGCACCAC 59.281 55.000 0.00 0.00 36.19 4.16
147 150 0.179032 TCACCGCACCACTGTGAATT 60.179 50.000 9.86 0.00 45.76 2.17
148 151 0.667993 CACCGCACCACTGTGAATTT 59.332 50.000 9.86 0.00 45.76 1.82
151 154 0.110238 CGCACCACTGTGAATTTCGG 60.110 55.000 9.86 0.00 45.76 4.30
162 165 0.643820 GAATTTCGGGTAGACGCACG 59.356 55.000 0.00 0.00 0.00 5.34
208 211 1.301479 GAAGCCGTTCCGTTGTCCT 60.301 57.895 0.00 0.00 0.00 3.85
220 223 1.946768 CGTTGTCCTGTTTGGTCATGT 59.053 47.619 0.00 0.00 34.07 3.21
226 229 2.637382 TCCTGTTTGGTCATGTCTGCTA 59.363 45.455 0.00 0.00 37.07 3.49
235 238 2.860735 GTCATGTCTGCTATGAACCGAC 59.139 50.000 0.00 0.00 36.41 4.79
243 246 2.613595 TGCTATGAACCGACATGAATGC 59.386 45.455 0.00 0.00 0.00 3.56
244 247 2.613595 GCTATGAACCGACATGAATGCA 59.386 45.455 0.00 0.00 0.00 3.96
246 249 2.183478 TGAACCGACATGAATGCAGT 57.817 45.000 0.00 0.00 0.00 4.40
247 250 1.805943 TGAACCGACATGAATGCAGTG 59.194 47.619 0.00 0.00 0.00 3.66
249 252 0.606130 ACCGACATGAATGCAGTGCA 60.606 50.000 22.22 22.22 44.86 4.57
307 310 2.434185 GAGCGGCGGTGTGAATGA 60.434 61.111 19.47 0.00 0.00 2.57
352 356 4.321824 GCCGACTTGAGTTAGGTAGAAAGT 60.322 45.833 7.92 0.00 0.00 2.66
358 362 5.368256 TGAGTTAGGTAGAAAGTCGTCAC 57.632 43.478 0.00 0.00 0.00 3.67
368 372 2.787601 AAGTCGTCACGTCTGCTTTA 57.212 45.000 0.00 0.00 0.00 1.85
383 387 4.082081 TCTGCTTTAAACTGGCATGAATGG 60.082 41.667 0.00 0.00 35.37 3.16
385 389 3.679639 GCTTTAAACTGGCATGAATGGGG 60.680 47.826 0.00 0.00 0.00 4.96
394 398 0.813610 CATGAATGGGGCGCGAGTAA 60.814 55.000 12.10 0.00 0.00 2.24
423 427 4.821589 GGCGGGAGAGGCGACTTG 62.822 72.222 0.00 0.00 44.43 3.16
424 428 3.760035 GCGGGAGAGGCGACTTGA 61.760 66.667 0.00 0.00 44.43 3.02
425 429 2.970639 CGGGAGAGGCGACTTGAA 59.029 61.111 0.00 0.00 44.43 2.69
426 430 1.517832 CGGGAGAGGCGACTTGAAT 59.482 57.895 0.00 0.00 44.43 2.57
427 431 0.807667 CGGGAGAGGCGACTTGAATG 60.808 60.000 0.00 0.00 44.43 2.67
428 432 0.250513 GGGAGAGGCGACTTGAATGT 59.749 55.000 0.00 0.00 44.43 2.71
429 433 1.363744 GGAGAGGCGACTTGAATGTG 58.636 55.000 0.00 0.00 44.43 3.21
430 434 1.363744 GAGAGGCGACTTGAATGTGG 58.636 55.000 0.00 0.00 44.43 4.17
431 435 0.976641 AGAGGCGACTTGAATGTGGA 59.023 50.000 0.00 0.00 44.43 4.02
432 436 1.066573 AGAGGCGACTTGAATGTGGAG 60.067 52.381 0.00 0.00 44.43 3.86
433 437 0.674895 AGGCGACTTGAATGTGGAGC 60.675 55.000 0.00 0.00 37.44 4.70
434 438 1.421485 GCGACTTGAATGTGGAGCG 59.579 57.895 0.00 0.00 0.00 5.03
435 439 1.970917 GCGACTTGAATGTGGAGCGG 61.971 60.000 0.00 0.00 0.00 5.52
436 440 1.796796 GACTTGAATGTGGAGCGGC 59.203 57.895 0.00 0.00 0.00 6.53
437 441 1.970917 GACTTGAATGTGGAGCGGCG 61.971 60.000 0.51 0.51 0.00 6.46
438 442 2.745884 TTGAATGTGGAGCGGCGG 60.746 61.111 9.78 0.00 0.00 6.13
439 443 3.545124 TTGAATGTGGAGCGGCGGT 62.545 57.895 13.08 13.08 0.00 5.68
440 444 3.499737 GAATGTGGAGCGGCGGTG 61.500 66.667 19.47 0.00 0.00 4.94
441 445 4.329545 AATGTGGAGCGGCGGTGT 62.330 61.111 19.47 0.00 0.00 4.16
444 448 4.980805 GTGGAGCGGCGGTGTGAA 62.981 66.667 19.47 0.00 0.00 3.18
445 449 4.015406 TGGAGCGGCGGTGTGAAT 62.015 61.111 19.47 0.00 0.00 2.57
446 450 3.499737 GGAGCGGCGGTGTGAATG 61.500 66.667 19.47 0.00 0.00 2.67
447 451 4.166011 GAGCGGCGGTGTGAATGC 62.166 66.667 19.47 0.00 0.00 3.56
453 457 2.358125 CGGTGTGAATGCCGGACA 60.358 61.111 5.05 2.56 43.85 4.02
454 458 1.745115 CGGTGTGAATGCCGGACAT 60.745 57.895 5.05 5.44 43.85 3.06
455 459 1.802636 GGTGTGAATGCCGGACATG 59.197 57.895 5.05 0.00 39.60 3.21
456 460 1.656818 GGTGTGAATGCCGGACATGG 61.657 60.000 5.05 0.00 39.60 3.66
457 461 1.378382 TGTGAATGCCGGACATGGG 60.378 57.895 5.05 0.00 39.60 4.00
458 462 2.120909 GTGAATGCCGGACATGGGG 61.121 63.158 5.05 0.00 39.60 4.96
459 463 2.304831 TGAATGCCGGACATGGGGA 61.305 57.895 5.05 0.00 39.60 4.81
460 464 1.823899 GAATGCCGGACATGGGGAC 60.824 63.158 5.05 0.00 39.60 4.46
461 465 3.697439 AATGCCGGACATGGGGACG 62.697 63.158 5.05 0.00 39.60 4.79
465 469 4.838152 CGGACATGGGGACGGCTG 62.838 72.222 0.00 0.00 0.00 4.85
466 470 4.489771 GGACATGGGGACGGCTGG 62.490 72.222 0.00 0.00 0.00 4.85
467 471 3.717294 GACATGGGGACGGCTGGT 61.717 66.667 0.00 0.00 0.00 4.00
468 472 3.682292 GACATGGGGACGGCTGGTC 62.682 68.421 0.00 0.00 45.31 4.02
480 484 4.586618 CTGGTCAGCCGACTTGAG 57.413 61.111 0.00 0.00 42.21 3.02
481 485 1.668294 CTGGTCAGCCGACTTGAGT 59.332 57.895 0.00 0.00 42.21 3.41
482 486 0.034059 CTGGTCAGCCGACTTGAGTT 59.966 55.000 0.00 0.00 42.21 3.01
483 487 0.468226 TGGTCAGCCGACTTGAGTTT 59.532 50.000 0.00 0.00 42.21 2.66
484 488 0.868406 GGTCAGCCGACTTGAGTTTG 59.132 55.000 0.00 0.00 42.21 2.93
485 489 1.583054 GTCAGCCGACTTGAGTTTGT 58.417 50.000 0.00 0.00 39.22 2.83
486 490 1.940613 GTCAGCCGACTTGAGTTTGTT 59.059 47.619 0.00 0.00 39.22 2.83
487 491 3.128349 GTCAGCCGACTTGAGTTTGTTA 58.872 45.455 0.00 0.00 39.22 2.41
488 492 3.184581 GTCAGCCGACTTGAGTTTGTTAG 59.815 47.826 0.00 0.00 39.22 2.34
489 493 3.069016 TCAGCCGACTTGAGTTTGTTAGA 59.931 43.478 0.00 0.00 0.00 2.10
490 494 3.807622 CAGCCGACTTGAGTTTGTTAGAA 59.192 43.478 0.00 0.00 0.00 2.10
491 495 4.272504 CAGCCGACTTGAGTTTGTTAGAAA 59.727 41.667 0.00 0.00 0.00 2.52
492 496 4.511826 AGCCGACTTGAGTTTGTTAGAAAG 59.488 41.667 0.00 0.00 0.00 2.62
493 497 4.773510 CCGACTTGAGTTTGTTAGAAAGC 58.226 43.478 0.00 0.00 0.00 3.51
494 498 4.319549 CCGACTTGAGTTTGTTAGAAAGCC 60.320 45.833 0.00 0.00 0.00 4.35
495 499 4.608445 CGACTTGAGTTTGTTAGAAAGCCG 60.608 45.833 0.00 0.00 0.00 5.52
496 500 4.196971 ACTTGAGTTTGTTAGAAAGCCGT 58.803 39.130 0.00 0.00 0.00 5.68
497 501 4.272748 ACTTGAGTTTGTTAGAAAGCCGTC 59.727 41.667 0.00 0.00 0.00 4.79
498 502 3.799366 TGAGTTTGTTAGAAAGCCGTCA 58.201 40.909 0.00 0.00 0.00 4.35
499 503 4.385825 TGAGTTTGTTAGAAAGCCGTCAT 58.614 39.130 0.00 0.00 0.00 3.06
500 504 4.213270 TGAGTTTGTTAGAAAGCCGTCATG 59.787 41.667 0.00 0.00 0.00 3.07
501 505 4.134563 AGTTTGTTAGAAAGCCGTCATGT 58.865 39.130 0.00 0.00 0.00 3.21
502 506 4.213482 AGTTTGTTAGAAAGCCGTCATGTC 59.787 41.667 0.00 0.00 0.00 3.06
503 507 3.678056 TGTTAGAAAGCCGTCATGTCT 57.322 42.857 0.00 0.00 0.00 3.41
504 508 3.325870 TGTTAGAAAGCCGTCATGTCTG 58.674 45.455 0.00 0.00 0.00 3.51
505 509 2.010145 TAGAAAGCCGTCATGTCTGC 57.990 50.000 0.00 0.00 0.00 4.26
506 510 0.322975 AGAAAGCCGTCATGTCTGCT 59.677 50.000 3.20 3.20 35.08 4.24
507 511 0.723981 GAAAGCCGTCATGTCTGCTC 59.276 55.000 9.08 0.00 32.62 4.26
508 512 0.322975 AAAGCCGTCATGTCTGCTCT 59.677 50.000 9.08 0.00 32.62 4.09
509 513 0.108424 AAGCCGTCATGTCTGCTCTC 60.108 55.000 9.08 0.00 32.62 3.20
510 514 1.216444 GCCGTCATGTCTGCTCTCA 59.784 57.895 0.00 0.00 0.00 3.27
511 515 0.390340 GCCGTCATGTCTGCTCTCAA 60.390 55.000 0.00 0.00 0.00 3.02
512 516 1.354040 CCGTCATGTCTGCTCTCAAC 58.646 55.000 0.00 0.00 0.00 3.18
513 517 1.067283 CCGTCATGTCTGCTCTCAACT 60.067 52.381 0.00 0.00 0.00 3.16
514 518 1.991264 CGTCATGTCTGCTCTCAACTG 59.009 52.381 0.00 0.00 0.00 3.16
515 519 2.352127 CGTCATGTCTGCTCTCAACTGA 60.352 50.000 0.00 0.00 0.00 3.41
516 520 2.992543 GTCATGTCTGCTCTCAACTGAC 59.007 50.000 0.00 0.00 36.75 3.51
517 521 2.629617 TCATGTCTGCTCTCAACTGACA 59.370 45.455 6.04 6.04 45.90 3.58
518 522 2.515926 TGTCTGCTCTCAACTGACAC 57.484 50.000 0.00 0.00 39.94 3.67
519 523 1.269257 TGTCTGCTCTCAACTGACACG 60.269 52.381 0.00 0.00 39.94 4.49
520 524 1.001268 GTCTGCTCTCAACTGACACGA 60.001 52.381 0.00 0.00 36.38 4.35
521 525 1.681264 TCTGCTCTCAACTGACACGAA 59.319 47.619 0.00 0.00 0.00 3.85
522 526 2.297315 TCTGCTCTCAACTGACACGAAT 59.703 45.455 0.00 0.00 0.00 3.34
523 527 2.407090 TGCTCTCAACTGACACGAATG 58.593 47.619 0.00 0.00 0.00 2.67
524 528 2.224042 TGCTCTCAACTGACACGAATGT 60.224 45.455 0.00 0.00 43.71 2.71
535 539 3.418675 ACGAATGTGGCGTGACTAG 57.581 52.632 0.00 0.00 40.94 2.57
536 540 0.736325 ACGAATGTGGCGTGACTAGC 60.736 55.000 0.00 0.00 40.94 3.42
537 541 0.458543 CGAATGTGGCGTGACTAGCT 60.459 55.000 0.00 0.00 34.52 3.32
538 542 1.281899 GAATGTGGCGTGACTAGCTC 58.718 55.000 0.00 0.00 34.52 4.09
539 543 0.458543 AATGTGGCGTGACTAGCTCG 60.459 55.000 0.00 0.00 36.63 5.03
540 544 1.595993 ATGTGGCGTGACTAGCTCGT 61.596 55.000 0.00 0.00 36.00 4.18
541 545 0.956902 TGTGGCGTGACTAGCTCGTA 60.957 55.000 0.00 0.00 36.00 3.43
542 546 0.248134 GTGGCGTGACTAGCTCGTAG 60.248 60.000 0.00 0.00 36.00 3.51
543 547 0.392060 TGGCGTGACTAGCTCGTAGA 60.392 55.000 0.00 0.00 36.00 2.59
544 548 0.027848 GGCGTGACTAGCTCGTAGAC 59.972 60.000 0.00 0.00 36.00 2.59
545 549 0.315220 GCGTGACTAGCTCGTAGACG 60.315 60.000 14.62 14.62 41.45 4.18
546 550 0.315220 CGTGACTAGCTCGTAGACGC 60.315 60.000 8.80 0.07 39.60 5.19
547 551 0.315220 GTGACTAGCTCGTAGACGCG 60.315 60.000 3.53 3.53 39.60 6.01
580 584 1.618343 GGACAAGGGTTTTGGACATGG 59.382 52.381 0.00 0.00 0.00 3.66
587 591 0.173255 GTTTTGGACATGGGCCATCG 59.827 55.000 18.16 14.69 34.90 3.84
592 596 1.378514 GACATGGGCCATCGGTGTT 60.379 57.895 18.16 0.00 0.00 3.32
614 618 1.375013 GGCGTACGTGGTGGATGTT 60.375 57.895 17.90 0.00 0.00 2.71
670 674 3.081804 AGTTTGTGGGATTCCGAACATC 58.918 45.455 9.84 7.36 35.24 3.06
676 680 1.134491 GGGATTCCGAACATCCGAACT 60.134 52.381 0.00 0.00 41.26 3.01
697 701 3.226777 TGGTTCGGACAAATTTGATGGT 58.773 40.909 24.64 1.64 0.00 3.55
705 709 2.035321 ACAAATTTGATGGTCGGCGTTT 59.965 40.909 24.64 0.00 0.00 3.60
769 783 1.073284 TGAACCACCTTAGAGTTGCCC 59.927 52.381 0.00 0.00 0.00 5.36
770 784 0.404426 AACCACCTTAGAGTTGCCCC 59.596 55.000 0.00 0.00 0.00 5.80
773 787 1.614317 CCACCTTAGAGTTGCCCCAAG 60.614 57.143 0.00 0.00 0.00 3.61
779 793 0.264657 AGAGTTGCCCCAAGGGTTTT 59.735 50.000 4.11 0.00 46.51 2.43
789 803 3.007635 CCCAAGGGTTTTAGTTCGCTAG 58.992 50.000 0.00 0.00 0.00 3.42
794 808 2.093606 GGGTTTTAGTTCGCTAGAGCCT 60.094 50.000 0.00 0.00 36.09 4.58
842 3990 2.165030 GGCAGATAGTTTGTGCAGCAAT 59.835 45.455 0.00 0.00 39.05 3.56
864 4012 8.846607 GCAATGAAGTTTCGATTTACGTAAAAT 58.153 29.630 23.49 12.61 40.59 1.82
910 4058 1.556911 CACAGCTCCCATACTCCACTT 59.443 52.381 0.00 0.00 0.00 3.16
1093 4243 0.031314 CGATCTCTGCAGGTGCGTAT 59.969 55.000 15.13 0.00 45.83 3.06
1105 4255 1.972795 GGTGCGTATCCCTAACCCATA 59.027 52.381 0.00 0.00 0.00 2.74
1143 4293 1.904287 CAACTCCATCCGACCCAAAA 58.096 50.000 0.00 0.00 0.00 2.44
1144 4294 1.539827 CAACTCCATCCGACCCAAAAC 59.460 52.381 0.00 0.00 0.00 2.43
1145 4295 0.037734 ACTCCATCCGACCCAAAACC 59.962 55.000 0.00 0.00 0.00 3.27
1146 4296 1.003112 TCCATCCGACCCAAAACCG 60.003 57.895 0.00 0.00 0.00 4.44
1147 4297 1.003112 CCATCCGACCCAAAACCGA 60.003 57.895 0.00 0.00 0.00 4.69
1148 4298 0.606944 CCATCCGACCCAAAACCGAA 60.607 55.000 0.00 0.00 0.00 4.30
1149 4299 1.459450 CATCCGACCCAAAACCGAAT 58.541 50.000 0.00 0.00 0.00 3.34
1150 4300 1.400494 CATCCGACCCAAAACCGAATC 59.600 52.381 0.00 0.00 0.00 2.52
1151 4301 0.321830 TCCGACCCAAAACCGAATCC 60.322 55.000 0.00 0.00 0.00 3.01
1152 4302 0.606944 CCGACCCAAAACCGAATCCA 60.607 55.000 0.00 0.00 0.00 3.41
1153 4303 0.802494 CGACCCAAAACCGAATCCAG 59.198 55.000 0.00 0.00 0.00 3.86
1156 4306 1.173913 CCCAAAACCGAATCCAGTCC 58.826 55.000 0.00 0.00 0.00 3.85
1166 4316 2.545526 CGAATCCAGTCCAATCCAATCG 59.454 50.000 0.00 0.00 0.00 3.34
1346 4497 5.425862 GGACTTCACCTCCCTAAGTAAGATT 59.574 44.000 0.00 0.00 33.72 2.40
1347 4498 6.407187 GGACTTCACCTCCCTAAGTAAGATTC 60.407 46.154 0.00 0.00 33.72 2.52
1348 4499 5.425862 ACTTCACCTCCCTAAGTAAGATTCC 59.574 44.000 0.00 0.00 31.84 3.01
1349 4500 5.222278 TCACCTCCCTAAGTAAGATTCCT 57.778 43.478 0.00 0.00 0.00 3.36
1350 4501 5.209659 TCACCTCCCTAAGTAAGATTCCTC 58.790 45.833 0.00 0.00 0.00 3.71
1351 4502 4.345547 CACCTCCCTAAGTAAGATTCCTCC 59.654 50.000 0.00 0.00 0.00 4.30
1352 4503 4.235636 ACCTCCCTAAGTAAGATTCCTCCT 59.764 45.833 0.00 0.00 0.00 3.69
1353 4504 5.220521 CCTCCCTAAGTAAGATTCCTCCTT 58.779 45.833 0.00 0.00 0.00 3.36
1354 4505 5.668080 CCTCCCTAAGTAAGATTCCTCCTTT 59.332 44.000 0.00 0.00 0.00 3.11
1355 4506 6.158871 CCTCCCTAAGTAAGATTCCTCCTTTT 59.841 42.308 0.00 0.00 0.00 2.27
1356 4507 7.311992 CCTCCCTAAGTAAGATTCCTCCTTTTT 60.312 40.741 0.00 0.00 0.00 1.94
1380 4531 4.030913 CCCCTTCCTTTCCCTTTAAATCC 58.969 47.826 0.00 0.00 0.00 3.01
1381 4532 4.030913 CCCTTCCTTTCCCTTTAAATCCC 58.969 47.826 0.00 0.00 0.00 3.85
1435 4592 0.595095 GGATGATGATTCTTGGCGGC 59.405 55.000 0.00 0.00 0.00 6.53
1634 4791 7.174946 ACAACTATGACAGGGTAATTCTTTGTG 59.825 37.037 0.00 0.00 0.00 3.33
1636 4793 2.811431 TGACAGGGTAATTCTTTGTGCG 59.189 45.455 0.00 0.00 0.00 5.34
1695 4852 5.832539 CATCCCTAGATGTGGTTTAGGAT 57.167 43.478 0.00 0.00 44.22 3.24
1696 4853 6.192970 CATCCCTAGATGTGGTTTAGGATT 57.807 41.667 0.00 0.00 44.22 3.01
1697 4854 6.605119 CATCCCTAGATGTGGTTTAGGATTT 58.395 40.000 0.00 0.00 44.22 2.17
1698 4855 7.745717 CATCCCTAGATGTGGTTTAGGATTTA 58.254 38.462 0.00 0.00 44.22 1.40
1705 4862 8.568617 AGATGTGGTTTAGGATTTATAGGAGT 57.431 34.615 0.00 0.00 0.00 3.85
1706 4863 8.432805 AGATGTGGTTTAGGATTTATAGGAGTG 58.567 37.037 0.00 0.00 0.00 3.51
1725 4882 1.153549 GGCTGCTAGGTCGGAACAG 60.154 63.158 0.00 0.00 0.00 3.16
1728 4885 1.591703 TGCTAGGTCGGAACAGCAG 59.408 57.895 13.65 1.55 39.03 4.24
1731 4888 0.037326 CTAGGTCGGAACAGCAGCAA 60.037 55.000 0.00 0.00 0.00 3.91
1732 4889 0.320421 TAGGTCGGAACAGCAGCAAC 60.320 55.000 0.00 0.00 0.00 4.17
1733 4890 2.551270 GTCGGAACAGCAGCAACG 59.449 61.111 0.00 0.00 0.00 4.10
1735 4892 4.389576 CGGAACAGCAGCAACGGC 62.390 66.667 0.00 0.00 41.61 5.68
1751 4908 3.261981 ACGGCTGTACTAAAGATTGGG 57.738 47.619 0.00 0.00 0.00 4.12
1784 4941 1.403493 CAGCGCGTCTGATATCAGTC 58.597 55.000 27.80 22.32 45.72 3.51
1824 4981 6.772360 TGCAATTTAAATCCTAGCATGTGA 57.228 33.333 0.10 0.00 0.00 3.58
1846 5003 7.950684 TGTGATACCTGTTAGCCTCTTATAGAT 59.049 37.037 0.00 0.00 0.00 1.98
1852 5009 7.032580 CCTGTTAGCCTCTTATAGATGAATCG 58.967 42.308 0.00 0.00 0.00 3.34
1895 5052 6.727824 ACATAGTACAATTTCACACTCTGC 57.272 37.500 0.00 0.00 0.00 4.26
1954 5111 4.889409 TGAATCTCAAGGTTTGCTGACTTT 59.111 37.500 0.00 0.00 0.00 2.66
2022 5179 4.035102 AGCTGGAGTTTCCCCCGC 62.035 66.667 0.00 0.00 35.03 6.13
2093 5250 3.463048 AAGTTTCTGGGCTTGATCCAT 57.537 42.857 0.00 0.00 33.29 3.41
2119 5276 5.316167 TGTGCTTTACAGTTTCCATCAGAT 58.684 37.500 0.00 0.00 33.42 2.90
2170 5327 5.163509 TGTCTGTAGATATTGCTGGACAGTC 60.164 44.000 0.82 0.00 36.52 3.51
2198 5355 2.622942 TGGTTTGCTGAACATGGAAGTC 59.377 45.455 0.00 0.00 40.13 3.01
2202 5359 2.507484 TGCTGAACATGGAAGTCCTTG 58.493 47.619 10.81 10.81 44.21 3.61
2203 5360 2.106338 TGCTGAACATGGAAGTCCTTGA 59.894 45.455 17.58 0.00 42.04 3.02
2214 5372 7.505585 ACATGGAAGTCCTTGATTTTTACAGAA 59.494 33.333 17.58 0.00 42.04 3.02
2332 5490 3.877801 GCGTCTTCTTATGCCAACG 57.122 52.632 0.00 0.00 0.00 4.10
2393 5551 8.077991 CACTGTCACAATGTCAAAGATAACAAT 58.922 33.333 0.00 0.00 0.00 2.71
2402 5560 6.851609 TGTCAAAGATAACAATTGAATCCCG 58.148 36.000 13.59 6.35 35.07 5.14
2407 5565 9.023967 CAAAGATAACAATTGAATCCCGAATTC 57.976 33.333 13.59 0.00 43.54 2.17
2415 5575 4.594123 TGAATCCCGAATTCGTAGCATA 57.406 40.909 25.10 6.09 45.78 3.14
2417 5577 5.547465 TGAATCCCGAATTCGTAGCATATT 58.453 37.500 25.10 14.32 45.78 1.28
2423 5583 5.119279 CCCGAATTCGTAGCATATTCAGAAG 59.881 44.000 25.10 5.05 37.74 2.85
2466 5632 8.295288 CAGCTTCATTCTTAGATGTGTTCTTTT 58.705 33.333 0.00 0.00 35.79 2.27
2495 5661 4.079730 TGGGACTATCAAGCTCTCTAGTCA 60.080 45.833 21.50 8.36 41.08 3.41
2558 5724 5.010012 GCACCAATTAGCTGTATTTATGCCT 59.990 40.000 0.00 0.00 0.00 4.75
2667 5837 5.705609 TTACACTTCCCTGCTTTTCATTC 57.294 39.130 0.00 0.00 0.00 2.67
2668 5838 3.837355 ACACTTCCCTGCTTTTCATTCT 58.163 40.909 0.00 0.00 0.00 2.40
2669 5839 3.571401 ACACTTCCCTGCTTTTCATTCTG 59.429 43.478 0.00 0.00 0.00 3.02
2676 5846 4.082571 CCCTGCTTTTCATTCTGTAACCAG 60.083 45.833 0.00 0.00 40.25 4.00
2839 6009 6.128363 CGGGTGTTAAGGAAGATACTGTTTTC 60.128 42.308 0.00 0.00 0.00 2.29
2896 6066 6.755607 GCAAATTCTCAAATCTTTCCTCATCC 59.244 38.462 0.00 0.00 0.00 3.51
2949 6119 7.308169 CGCACCTATCAACATCATGTTATGAAT 60.308 37.037 1.72 0.00 43.50 2.57
3008 6178 8.701895 TCCTTAATCGGTAGTCTTCAATTGTAT 58.298 33.333 5.13 0.00 0.00 2.29
3082 6257 2.361757 TGGTCCTGATGTTTTGCAACAG 59.638 45.455 0.00 2.49 46.25 3.16
3118 6293 7.603180 TGAGAAGTGGCACTATGTAGATATT 57.397 36.000 22.37 0.00 0.00 1.28
3434 6614 4.503991 CCACTGCTAACCTTTTCTCTCTGT 60.504 45.833 0.00 0.00 0.00 3.41
3619 6801 5.599656 AGTTGTTATATGCATTGCTCCCATT 59.400 36.000 3.54 0.00 0.00 3.16
3622 6804 5.363292 TGTTATATGCATTGCTCCCATTGTT 59.637 36.000 3.54 0.00 0.00 2.83
3694 6876 5.878406 TTGTTGGTTCCACATTATTTGGT 57.122 34.783 0.00 0.00 35.42 3.67
3701 6883 5.128663 GGTTCCACATTATTTGGTGCCTTAT 59.871 40.000 0.00 0.00 35.42 1.73
3725 6907 2.067932 TTGCTTGTCCCAGGGGTCTG 62.068 60.000 5.33 0.00 40.59 3.51
3768 6950 3.321111 TCGGTCCCAAGTATATCAGAAGC 59.679 47.826 0.00 0.00 0.00 3.86
3857 7039 1.825474 ACATTCCTGAGTACCCACGAG 59.175 52.381 0.00 0.00 0.00 4.18
3885 7067 8.728088 AATTCTGTATTAACTGTTTTGCTTCG 57.272 30.769 0.00 0.00 0.00 3.79
3914 7096 3.339141 CAAGCCCTGTTCTCTAAAGTCC 58.661 50.000 0.00 0.00 0.00 3.85
3933 7115 4.042062 AGTCCAAAGTCAATCCACAGATGA 59.958 41.667 0.00 0.00 31.29 2.92
3939 7121 5.495926 AGTCAATCCACAGATGACTTTCT 57.504 39.130 2.00 0.00 37.48 2.52
3940 7122 5.243981 AGTCAATCCACAGATGACTTTCTG 58.756 41.667 2.00 0.09 46.94 3.02
3988 7170 9.383519 CAAGTATAACATATTCGAGGGCAATAT 57.616 33.333 0.00 0.00 0.00 1.28
4006 7188 9.177608 GGGCAATATTATATTCATGAGCAACTA 57.822 33.333 0.00 0.00 0.00 2.24
4059 7241 3.563808 TGTTGTGACATGTACTGCTTTCC 59.436 43.478 0.00 0.00 0.00 3.13
4071 7253 5.825679 TGTACTGCTTTCCTACATTGTTGTT 59.174 36.000 0.00 0.00 37.28 2.83
4144 7338 1.101049 CGGGTGTCTTTGTGCCTGTT 61.101 55.000 0.00 0.00 0.00 3.16
4174 7368 5.046950 CCCTGTTATTACTAGAGCAGGATCC 60.047 48.000 2.48 2.48 44.40 3.36
4179 7373 2.373335 ACTAGAGCAGGATCCGACAT 57.627 50.000 5.98 0.00 0.00 3.06
4186 7380 1.813092 GCAGGATCCGACATGCAGAAT 60.813 52.381 16.63 0.00 45.07 2.40
4197 7427 5.178252 CCGACATGCAGAATCCTGTTATTAG 59.822 44.000 0.00 0.00 42.35 1.73
4279 7509 2.037144 AGGTTCGATACGGCCAGTATT 58.963 47.619 17.48 5.85 45.47 1.89
4288 7518 0.108186 CGGCCAGTATTCTGCAGTCA 60.108 55.000 14.67 1.81 40.09 3.41
4294 7524 4.458397 CCAGTATTCTGCAGTCAATGGAT 58.542 43.478 19.55 6.35 40.09 3.41
4346 7576 3.708631 CAGATCATCAACTCCTGTACCCT 59.291 47.826 0.00 0.00 0.00 4.34
4370 7600 7.821359 CCTTGATGTGTATAGACTATGGAATGG 59.179 40.741 5.17 0.00 0.00 3.16
4378 7608 1.593006 GACTATGGAATGGCGTTGTCG 59.407 52.381 0.00 0.00 40.37 4.35
4399 7629 3.071479 GCTCGTTGTTAACTGGAATCCA 58.929 45.455 0.48 0.48 0.00 3.41
4400 7630 3.120304 GCTCGTTGTTAACTGGAATCCAC 60.120 47.826 7.22 0.00 0.00 4.02
4410 7640 2.126228 GAATCCACGACGCCACGA 60.126 61.111 0.00 0.00 37.03 4.35
4411 7641 1.518572 GAATCCACGACGCCACGAT 60.519 57.895 0.00 0.00 37.03 3.73
4412 7642 1.752501 GAATCCACGACGCCACGATG 61.753 60.000 0.00 0.12 37.03 3.84
4425 7655 4.088421 CGATGTTTCGTCTCCCCG 57.912 61.111 0.00 0.00 40.53 5.73
4426 7656 1.214589 CGATGTTTCGTCTCCCCGT 59.785 57.895 0.00 0.00 40.53 5.28
4427 7657 1.076533 CGATGTTTCGTCTCCCCGTG 61.077 60.000 0.00 0.00 40.53 4.94
4430 7660 2.027625 GTTTCGTCTCCCCGTGCTG 61.028 63.158 0.00 0.00 0.00 4.41
4431 7661 2.504274 TTTCGTCTCCCCGTGCTGT 61.504 57.895 0.00 0.00 0.00 4.40
4432 7662 2.709125 TTTCGTCTCCCCGTGCTGTG 62.709 60.000 0.00 0.00 0.00 3.66
4433 7663 3.991051 CGTCTCCCCGTGCTGTGT 61.991 66.667 0.00 0.00 0.00 3.72
4436 7666 0.034337 GTCTCCCCGTGCTGTGTTTA 59.966 55.000 0.00 0.00 0.00 2.01
4461 7692 8.596781 AGTTGGTATCTGTAATCTAGAACACT 57.403 34.615 0.00 0.00 0.00 3.55
4485 7716 4.574599 AATTGTCACACCTTTCTTGAGC 57.425 40.909 0.00 0.00 0.00 4.26
4507 7740 9.013229 TGAGCTGTTATAAATGTCATGTCTTTT 57.987 29.630 0.00 8.43 0.00 2.27
4509 7742 7.756722 AGCTGTTATAAATGTCATGTCTTTTGC 59.243 33.333 12.05 7.22 0.00 3.68
4547 7781 6.382869 GCTTTTGCTTGAGGTGATATATGT 57.617 37.500 0.00 0.00 43.35 2.29
4567 7801 4.289342 TGTGATGTCTGAAATTGTTTGCG 58.711 39.130 0.00 0.00 0.00 4.85
4611 7845 4.156008 GGAAGAATTCTTGTGCGTTATGGT 59.844 41.667 25.12 0.00 46.56 3.55
4637 7871 5.674525 TCTTTCTTAGCATGTGGGTCATAG 58.325 41.667 0.00 0.00 34.67 2.23
4648 7882 3.118038 TGTGGGTCATAGATTAACCAGCC 60.118 47.826 0.00 0.00 34.62 4.85
4661 7895 1.568504 ACCAGCCTTCTAATCGGTCA 58.431 50.000 0.00 0.00 0.00 4.02
4677 7911 3.701542 TCGGTCAGATGCTGAATAAGACT 59.298 43.478 0.00 0.00 42.46 3.24
4684 7918 6.381133 TCAGATGCTGAATAAGACTGTCCTTA 59.619 38.462 3.76 3.53 37.57 2.69
4701 7940 7.038231 ACTGTCCTTACTTATTACAAGCCTCTT 60.038 37.037 0.00 0.00 0.00 2.85
4704 7943 7.492994 GTCCTTACTTATTACAAGCCTCTTCAG 59.507 40.741 0.00 0.00 0.00 3.02
4711 7950 3.515602 ACAAGCCTCTTCAGAAATGGT 57.484 42.857 3.78 0.00 0.00 3.55
4712 7951 4.640771 ACAAGCCTCTTCAGAAATGGTA 57.359 40.909 3.78 0.00 0.00 3.25
4718 7957 5.066593 GCCTCTTCAGAAATGGTATAAGGG 58.933 45.833 3.78 0.00 0.00 3.95
4781 8022 5.474532 ACAGCTTTCATATTCTCTTGCAACA 59.525 36.000 0.00 0.00 0.00 3.33
4786 8027 7.627939 GCTTTCATATTCTCTTGCAACATCACT 60.628 37.037 0.00 0.00 0.00 3.41
4793 8034 6.101650 TCTCTTGCAACATCACTTCTCTTA 57.898 37.500 0.00 0.00 0.00 2.10
4797 8038 3.691118 TGCAACATCACTTCTCTTATGCC 59.309 43.478 0.00 0.00 0.00 4.40
4798 8039 3.691118 GCAACATCACTTCTCTTATGCCA 59.309 43.478 0.00 0.00 0.00 4.92
4913 8154 1.896465 CCCCCGCTTTGTATTCCAAAA 59.104 47.619 0.00 0.00 42.31 2.44
4927 8168 1.473278 TCCAAAACAACCAACACCGAC 59.527 47.619 0.00 0.00 0.00 4.79
4990 8233 3.565905 AAGAAGAAGAAGCAAATGCCG 57.434 42.857 0.94 0.00 43.38 5.69
5056 8299 3.197983 GCCCACTAGAGACAAACCACTAT 59.802 47.826 0.00 0.00 0.00 2.12
5061 8304 6.154706 CCACTAGAGACAAACCACTATAACCT 59.845 42.308 0.00 0.00 0.00 3.50
5117 8360 3.488090 GAAGGAAAGCGACGCCGG 61.488 66.667 17.79 0.00 36.06 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.106502 TGAGCCACATCTCCCTATACTAGT 59.893 45.833 0.00 0.00 32.22 2.57
6 7 3.141083 TCTGAGCCACATCTCCCTATACT 59.859 47.826 0.00 0.00 32.22 2.12
10 11 1.412217 CCTCTGAGCCACATCTCCCTA 60.412 57.143 0.00 0.00 32.22 3.53
25 28 2.966516 GTCATAGAACCCTACCCCTCTG 59.033 54.545 0.00 0.00 0.00 3.35
28 31 1.290130 ACGTCATAGAACCCTACCCCT 59.710 52.381 0.00 0.00 0.00 4.79
34 37 1.946984 TTGGGACGTCATAGAACCCT 58.053 50.000 18.91 0.00 40.98 4.34
45 48 4.569564 GCTATTTAAAGTCGATTGGGACGT 59.430 41.667 0.00 0.00 41.81 4.34
46 49 4.025145 GGCTATTTAAAGTCGATTGGGACG 60.025 45.833 0.00 0.00 41.81 4.79
85 88 1.710339 GCATTCAAGTCGTCGCTCC 59.290 57.895 0.00 0.00 0.00 4.70
86 89 1.071019 TCGCATTCAAGTCGTCGCTC 61.071 55.000 0.00 0.00 0.00 5.03
90 93 1.341802 CGCTCGCATTCAAGTCGTC 59.658 57.895 0.00 0.00 0.00 4.20
91 94 2.730672 GCGCTCGCATTCAAGTCGT 61.731 57.895 9.59 0.00 41.49 4.34
95 98 2.402388 CAGGCGCTCGCATTCAAG 59.598 61.111 16.36 0.00 44.11 3.02
111 114 3.013921 GGTGAACGATAAGCCAAATCCA 58.986 45.455 0.00 0.00 0.00 3.41
112 115 3.692791 GGTGAACGATAAGCCAAATCC 57.307 47.619 0.00 0.00 0.00 3.01
139 142 1.659098 GCGTCTACCCGAAATTCACAG 59.341 52.381 0.00 0.00 0.00 3.66
147 150 4.424566 GCCGTGCGTCTACCCGAA 62.425 66.667 0.00 0.00 0.00 4.30
151 154 2.216750 TAACCAGCCGTGCGTCTACC 62.217 60.000 0.00 0.00 0.00 3.18
162 165 1.886886 TTCAAGTCGGTTAACCAGCC 58.113 50.000 24.14 10.78 35.14 4.85
196 199 1.332686 GACCAAACAGGACAACGGAAC 59.667 52.381 0.00 0.00 41.22 3.62
198 201 0.542333 TGACCAAACAGGACAACGGA 59.458 50.000 0.00 0.00 39.13 4.69
200 203 1.946768 ACATGACCAAACAGGACAACG 59.053 47.619 0.00 0.00 45.00 4.10
203 206 2.849942 CAGACATGACCAAACAGGACA 58.150 47.619 0.00 0.00 45.88 4.02
205 208 1.421268 AGCAGACATGACCAAACAGGA 59.579 47.619 0.00 0.00 41.22 3.86
208 211 4.284829 TCATAGCAGACATGACCAAACA 57.715 40.909 0.00 0.00 0.00 2.83
220 223 3.885724 TTCATGTCGGTTCATAGCAGA 57.114 42.857 0.00 0.00 0.00 4.26
226 229 2.421073 CACTGCATTCATGTCGGTTCAT 59.579 45.455 0.00 0.00 0.00 2.57
243 246 1.948138 CCGCTCGCTCTATGCACTG 60.948 63.158 0.00 0.00 43.06 3.66
244 247 2.415010 CCGCTCGCTCTATGCACT 59.585 61.111 0.00 0.00 43.06 4.40
246 249 3.147595 ACCCGCTCGCTCTATGCA 61.148 61.111 0.00 0.00 43.06 3.96
247 250 2.659897 CACCCGCTCGCTCTATGC 60.660 66.667 0.00 0.00 38.57 3.14
249 252 3.144120 CTGCACCCGCTCGCTCTAT 62.144 63.158 0.00 0.00 39.64 1.98
277 280 1.970917 GCCGCTCCACATTCAAGTCG 61.971 60.000 0.00 0.00 0.00 4.18
332 336 6.011476 ACGACTTTCTACCTAACTCAAGTC 57.989 41.667 0.00 0.00 37.73 3.01
352 356 2.792674 CAGTTTAAAGCAGACGTGACGA 59.207 45.455 13.70 0.00 0.00 4.20
354 358 2.349532 GCCAGTTTAAAGCAGACGTGAC 60.350 50.000 0.00 0.00 0.00 3.67
358 362 2.483877 TCATGCCAGTTTAAAGCAGACG 59.516 45.455 6.73 0.00 40.40 4.18
368 372 1.606885 CGCCCCATTCATGCCAGTTT 61.607 55.000 0.00 0.00 0.00 2.66
410 414 1.363744 CACATTCAAGTCGCCTCTCC 58.636 55.000 0.00 0.00 0.00 3.71
420 424 2.753966 CCGCCGCTCCACATTCAAG 61.754 63.158 0.00 0.00 0.00 3.02
421 425 2.745884 CCGCCGCTCCACATTCAA 60.746 61.111 0.00 0.00 0.00 2.69
422 426 4.015406 ACCGCCGCTCCACATTCA 62.015 61.111 0.00 0.00 0.00 2.57
423 427 3.499737 CACCGCCGCTCCACATTC 61.500 66.667 0.00 0.00 0.00 2.67
424 428 4.329545 ACACCGCCGCTCCACATT 62.330 61.111 0.00 0.00 0.00 2.71
427 431 4.980805 TTCACACCGCCGCTCCAC 62.981 66.667 0.00 0.00 0.00 4.02
428 432 4.015406 ATTCACACCGCCGCTCCA 62.015 61.111 0.00 0.00 0.00 3.86
429 433 3.499737 CATTCACACCGCCGCTCC 61.500 66.667 0.00 0.00 0.00 4.70
430 434 4.166011 GCATTCACACCGCCGCTC 62.166 66.667 0.00 0.00 0.00 5.03
437 441 1.656818 CCATGTCCGGCATTCACACC 61.657 60.000 8.42 0.00 35.19 4.16
438 442 1.656818 CCCATGTCCGGCATTCACAC 61.657 60.000 8.42 0.00 35.19 3.82
439 443 1.378382 CCCATGTCCGGCATTCACA 60.378 57.895 8.42 2.07 35.19 3.58
440 444 2.120909 CCCCATGTCCGGCATTCAC 61.121 63.158 8.42 0.00 35.19 3.18
441 445 2.275089 CCCCATGTCCGGCATTCA 59.725 61.111 8.42 0.47 35.19 2.57
442 446 1.823899 GTCCCCATGTCCGGCATTC 60.824 63.158 8.42 0.00 35.19 2.67
443 447 2.275418 GTCCCCATGTCCGGCATT 59.725 61.111 8.42 0.00 35.19 3.56
444 448 4.175337 CGTCCCCATGTCCGGCAT 62.175 66.667 0.00 0.06 38.60 4.40
448 452 4.838152 CAGCCGTCCCCATGTCCG 62.838 72.222 0.00 0.00 0.00 4.79
449 453 4.489771 CCAGCCGTCCCCATGTCC 62.490 72.222 0.00 0.00 0.00 4.02
450 454 3.682292 GACCAGCCGTCCCCATGTC 62.682 68.421 0.00 0.00 35.23 3.06
451 455 3.717294 GACCAGCCGTCCCCATGT 61.717 66.667 0.00 0.00 35.23 3.21
452 456 3.687321 CTGACCAGCCGTCCCCATG 62.687 68.421 0.00 0.00 41.18 3.66
453 457 3.402681 CTGACCAGCCGTCCCCAT 61.403 66.667 0.00 0.00 41.18 4.00
463 467 0.034059 AACTCAAGTCGGCTGACCAG 59.966 55.000 22.17 16.91 46.74 4.00
464 468 0.468226 AAACTCAAGTCGGCTGACCA 59.532 50.000 22.17 5.76 46.74 4.02
465 469 0.868406 CAAACTCAAGTCGGCTGACC 59.132 55.000 22.17 4.57 46.74 4.02
466 470 1.583054 ACAAACTCAAGTCGGCTGAC 58.417 50.000 18.39 18.39 45.86 3.51
467 471 2.325583 AACAAACTCAAGTCGGCTGA 57.674 45.000 0.00 0.00 0.00 4.26
468 472 3.390135 TCTAACAAACTCAAGTCGGCTG 58.610 45.455 0.00 0.00 0.00 4.85
469 473 3.746045 TCTAACAAACTCAAGTCGGCT 57.254 42.857 0.00 0.00 0.00 5.52
470 474 4.773510 CTTTCTAACAAACTCAAGTCGGC 58.226 43.478 0.00 0.00 0.00 5.54
471 475 4.319549 GGCTTTCTAACAAACTCAAGTCGG 60.320 45.833 0.00 0.00 0.00 4.79
472 476 4.608445 CGGCTTTCTAACAAACTCAAGTCG 60.608 45.833 0.00 0.00 33.56 4.18
473 477 4.272748 ACGGCTTTCTAACAAACTCAAGTC 59.727 41.667 0.00 0.00 0.00 3.01
474 478 4.196971 ACGGCTTTCTAACAAACTCAAGT 58.803 39.130 0.00 0.00 0.00 3.16
475 479 4.272504 TGACGGCTTTCTAACAAACTCAAG 59.727 41.667 0.00 0.00 0.00 3.02
476 480 4.193090 TGACGGCTTTCTAACAAACTCAA 58.807 39.130 0.00 0.00 0.00 3.02
477 481 3.799366 TGACGGCTTTCTAACAAACTCA 58.201 40.909 0.00 0.00 0.00 3.41
478 482 4.213482 ACATGACGGCTTTCTAACAAACTC 59.787 41.667 0.00 0.00 0.00 3.01
479 483 4.134563 ACATGACGGCTTTCTAACAAACT 58.865 39.130 0.00 0.00 0.00 2.66
480 484 4.213482 AGACATGACGGCTTTCTAACAAAC 59.787 41.667 0.00 0.00 0.00 2.93
481 485 4.213270 CAGACATGACGGCTTTCTAACAAA 59.787 41.667 0.00 0.00 0.00 2.83
482 486 3.745975 CAGACATGACGGCTTTCTAACAA 59.254 43.478 0.00 0.00 0.00 2.83
483 487 3.325870 CAGACATGACGGCTTTCTAACA 58.674 45.455 0.00 0.00 0.00 2.41
484 488 2.094417 GCAGACATGACGGCTTTCTAAC 59.906 50.000 12.40 0.00 0.00 2.34
485 489 2.028112 AGCAGACATGACGGCTTTCTAA 60.028 45.455 15.96 0.00 38.01 2.10
486 490 1.550524 AGCAGACATGACGGCTTTCTA 59.449 47.619 15.96 0.00 38.01 2.10
487 491 0.322975 AGCAGACATGACGGCTTTCT 59.677 50.000 15.96 0.00 38.01 2.52
488 492 0.723981 GAGCAGACATGACGGCTTTC 59.276 55.000 21.40 8.63 40.87 2.62
489 493 0.322975 AGAGCAGACATGACGGCTTT 59.677 50.000 21.40 14.52 40.87 3.51
490 494 0.108424 GAGAGCAGACATGACGGCTT 60.108 55.000 21.40 12.62 40.87 4.35
491 495 1.253593 TGAGAGCAGACATGACGGCT 61.254 55.000 20.76 20.76 43.14 5.52
492 496 0.390340 TTGAGAGCAGACATGACGGC 60.390 55.000 11.83 11.83 0.00 5.68
493 497 1.067283 AGTTGAGAGCAGACATGACGG 60.067 52.381 0.00 0.00 0.00 4.79
494 498 1.991264 CAGTTGAGAGCAGACATGACG 59.009 52.381 0.00 0.00 0.00 4.35
495 499 2.992543 GTCAGTTGAGAGCAGACATGAC 59.007 50.000 0.00 0.00 0.00 3.06
496 500 2.629617 TGTCAGTTGAGAGCAGACATGA 59.370 45.455 0.00 0.00 34.59 3.07
497 501 2.735663 GTGTCAGTTGAGAGCAGACATG 59.264 50.000 0.00 0.00 40.80 3.21
498 502 2.608998 CGTGTCAGTTGAGAGCAGACAT 60.609 50.000 0.00 0.00 40.80 3.06
499 503 1.269257 CGTGTCAGTTGAGAGCAGACA 60.269 52.381 0.00 0.00 36.92 3.41
500 504 1.001268 TCGTGTCAGTTGAGAGCAGAC 60.001 52.381 0.00 0.00 0.00 3.51
501 505 1.318576 TCGTGTCAGTTGAGAGCAGA 58.681 50.000 0.00 0.00 0.00 4.26
502 506 2.140065 TTCGTGTCAGTTGAGAGCAG 57.860 50.000 0.00 0.00 0.00 4.24
503 507 2.224042 ACATTCGTGTCAGTTGAGAGCA 60.224 45.455 0.00 0.00 0.00 4.26
504 508 2.156504 CACATTCGTGTCAGTTGAGAGC 59.843 50.000 0.00 0.00 38.41 4.09
505 509 2.733552 CCACATTCGTGTCAGTTGAGAG 59.266 50.000 0.00 0.00 41.93 3.20
506 510 2.754472 CCACATTCGTGTCAGTTGAGA 58.246 47.619 0.00 0.00 41.93 3.27
507 511 1.195448 GCCACATTCGTGTCAGTTGAG 59.805 52.381 0.00 0.00 41.93 3.02
508 512 1.225855 GCCACATTCGTGTCAGTTGA 58.774 50.000 0.00 0.00 41.93 3.18
509 513 0.110688 CGCCACATTCGTGTCAGTTG 60.111 55.000 0.00 0.00 41.93 3.16
510 514 0.531974 ACGCCACATTCGTGTCAGTT 60.532 50.000 0.00 0.00 41.93 3.16
511 515 1.069090 ACGCCACATTCGTGTCAGT 59.931 52.632 0.00 0.00 41.93 3.41
512 516 3.951332 ACGCCACATTCGTGTCAG 58.049 55.556 0.00 0.00 41.93 3.51
517 521 0.736325 GCTAGTCACGCCACATTCGT 60.736 55.000 0.00 0.00 41.28 3.85
518 522 0.458543 AGCTAGTCACGCCACATTCG 60.459 55.000 0.00 0.00 0.00 3.34
519 523 1.281899 GAGCTAGTCACGCCACATTC 58.718 55.000 0.00 0.00 0.00 2.67
520 524 0.458543 CGAGCTAGTCACGCCACATT 60.459 55.000 0.00 0.00 0.00 2.71
521 525 1.139734 CGAGCTAGTCACGCCACAT 59.860 57.895 0.00 0.00 0.00 3.21
522 526 0.956902 TACGAGCTAGTCACGCCACA 60.957 55.000 1.52 0.00 31.85 4.17
523 527 0.248134 CTACGAGCTAGTCACGCCAC 60.248 60.000 1.52 0.00 31.85 5.01
524 528 0.392060 TCTACGAGCTAGTCACGCCA 60.392 55.000 1.52 0.00 31.85 5.69
525 529 0.027848 GTCTACGAGCTAGTCACGCC 59.972 60.000 1.52 0.00 31.85 5.68
526 530 0.315220 CGTCTACGAGCTAGTCACGC 60.315 60.000 15.24 1.14 43.02 5.34
527 531 0.315220 GCGTCTACGAGCTAGTCACG 60.315 60.000 20.31 20.31 43.02 4.35
528 532 0.315220 CGCGTCTACGAGCTAGTCAC 60.315 60.000 1.52 0.82 43.02 3.67
529 533 1.426816 CCGCGTCTACGAGCTAGTCA 61.427 60.000 1.52 0.00 43.02 3.41
530 534 1.276250 CCGCGTCTACGAGCTAGTC 59.724 63.158 1.52 0.00 43.02 2.59
531 535 2.821688 GCCGCGTCTACGAGCTAGT 61.822 63.158 4.92 4.47 43.02 2.57
532 536 2.052060 GCCGCGTCTACGAGCTAG 60.052 66.667 4.92 0.00 43.02 3.42
533 537 3.933498 CGCCGCGTCTACGAGCTA 61.933 66.667 4.92 0.00 43.02 3.32
537 541 3.561213 CTCTCGCCGCGTCTACGA 61.561 66.667 13.39 7.98 43.02 3.43
538 542 3.494454 CTCTCTCGCCGCGTCTACG 62.494 68.421 13.39 3.30 43.27 3.51
539 543 2.325166 CTCTCTCGCCGCGTCTAC 59.675 66.667 13.39 0.00 0.00 2.59
540 544 2.895865 CCTCTCTCGCCGCGTCTA 60.896 66.667 13.39 0.00 0.00 2.59
563 567 0.321346 GCCCATGTCCAAAACCCTTG 59.679 55.000 0.00 0.00 0.00 3.61
595 599 2.883730 CATCCACCACGTACGCCG 60.884 66.667 16.72 7.97 44.03 6.46
597 601 1.680105 CGAACATCCACCACGTACGC 61.680 60.000 16.72 0.00 0.00 4.42
603 607 2.388232 GCGTCCGAACATCCACCAC 61.388 63.158 0.00 0.00 0.00 4.16
614 618 3.862991 TGGTTTGTGGGCGTCCGA 61.863 61.111 0.00 0.00 35.24 4.55
676 680 3.226777 ACCATCAAATTTGTCCGAACCA 58.773 40.909 17.47 0.00 0.00 3.67
718 722 1.679680 CCTGAATCGCTGGATTGCATT 59.320 47.619 0.00 0.00 42.86 3.56
721 725 0.942962 CTCCTGAATCGCTGGATTGC 59.057 55.000 0.00 0.00 42.86 3.56
735 748 3.441572 GGTGGTTCATCAAATCACTCCTG 59.558 47.826 1.63 0.00 46.42 3.86
769 783 3.933332 CTCTAGCGAACTAAAACCCTTGG 59.067 47.826 0.00 0.00 0.00 3.61
770 784 3.371285 GCTCTAGCGAACTAAAACCCTTG 59.629 47.826 0.00 0.00 0.00 3.61
773 787 2.093606 AGGCTCTAGCGAACTAAAACCC 60.094 50.000 0.00 0.00 43.26 4.11
779 793 1.749634 GAACCAGGCTCTAGCGAACTA 59.250 52.381 0.00 0.00 43.26 2.24
789 803 4.385358 TTTCTTTTGTTGAACCAGGCTC 57.615 40.909 0.00 0.00 0.00 4.70
814 837 4.039004 TGCACAAACTATCTGCCATGTTTT 59.961 37.500 0.00 0.00 31.30 2.43
864 4012 0.737219 GCCGGAAAGCGTACTCTCTA 59.263 55.000 5.05 0.00 0.00 2.43
866 4014 0.108756 AAGCCGGAAAGCGTACTCTC 60.109 55.000 5.05 0.00 38.01 3.20
867 4015 0.389948 CAAGCCGGAAAGCGTACTCT 60.390 55.000 5.05 0.00 38.01 3.24
868 4016 0.389426 TCAAGCCGGAAAGCGTACTC 60.389 55.000 5.05 0.00 38.01 2.59
870 4018 0.669625 ACTCAAGCCGGAAAGCGTAC 60.670 55.000 5.05 0.00 38.01 3.67
918 4066 1.451567 CTGTAGGCCGGACTCGAGA 60.452 63.158 16.98 0.00 39.00 4.04
1093 4243 0.569204 ATCGGGGTATGGGTTAGGGA 59.431 55.000 0.00 0.00 0.00 4.20
1105 4255 2.122369 GGAGATGGGGATCGGGGT 60.122 66.667 0.00 0.00 0.00 4.95
1143 4293 1.285280 TGGATTGGACTGGATTCGGT 58.715 50.000 0.00 0.00 34.68 4.69
1144 4294 2.418368 TTGGATTGGACTGGATTCGG 57.582 50.000 0.00 0.00 0.00 4.30
1145 4295 2.545526 CGATTGGATTGGACTGGATTCG 59.454 50.000 0.00 0.00 0.00 3.34
1146 4296 3.808728 TCGATTGGATTGGACTGGATTC 58.191 45.455 0.00 0.00 0.00 2.52
1147 4297 3.931907 TCGATTGGATTGGACTGGATT 57.068 42.857 0.00 0.00 0.00 3.01
1148 4298 3.931907 TTCGATTGGATTGGACTGGAT 57.068 42.857 0.00 0.00 0.00 3.41
1149 4299 3.433598 GGATTCGATTGGATTGGACTGGA 60.434 47.826 0.00 0.00 0.00 3.86
1150 4300 2.880890 GGATTCGATTGGATTGGACTGG 59.119 50.000 0.00 0.00 0.00 4.00
1151 4301 3.544684 TGGATTCGATTGGATTGGACTG 58.455 45.455 0.00 0.00 0.00 3.51
1152 4302 3.931907 TGGATTCGATTGGATTGGACT 57.068 42.857 0.00 0.00 0.00 3.85
1153 4303 4.823989 AGATTGGATTCGATTGGATTGGAC 59.176 41.667 0.00 0.00 0.00 4.02
1156 4306 4.512944 ACGAGATTGGATTCGATTGGATTG 59.487 41.667 0.51 0.00 39.93 2.67
1226 4376 0.528684 GGAACAGGATCCGCTCGAAG 60.529 60.000 5.98 0.00 0.00 3.79
1353 4504 3.717507 AAGGGAAAGGAAGGGGAAAAA 57.282 42.857 0.00 0.00 0.00 1.94
1354 4505 3.717507 AAAGGGAAAGGAAGGGGAAAA 57.282 42.857 0.00 0.00 0.00 2.29
1355 4506 4.836255 TTAAAGGGAAAGGAAGGGGAAA 57.164 40.909 0.00 0.00 0.00 3.13
1356 4507 4.836255 TTTAAAGGGAAAGGAAGGGGAA 57.164 40.909 0.00 0.00 0.00 3.97
1357 4508 4.264668 GGATTTAAAGGGAAAGGAAGGGGA 60.265 45.833 0.00 0.00 0.00 4.81
1358 4509 4.030913 GGATTTAAAGGGAAAGGAAGGGG 58.969 47.826 0.00 0.00 0.00 4.79
1359 4510 4.030913 GGGATTTAAAGGGAAAGGAAGGG 58.969 47.826 0.00 0.00 0.00 3.95
1360 4511 4.947883 AGGGATTTAAAGGGAAAGGAAGG 58.052 43.478 0.00 0.00 0.00 3.46
1363 4514 4.080526 CGAGAGGGATTTAAAGGGAAAGGA 60.081 45.833 0.00 0.00 0.00 3.36
1365 4516 4.844884 ACGAGAGGGATTTAAAGGGAAAG 58.155 43.478 0.00 0.00 0.00 2.62
1368 4519 3.197116 GTGACGAGAGGGATTTAAAGGGA 59.803 47.826 0.00 0.00 0.00 4.20
1380 4531 3.812019 CCGGACCGTGACGAGAGG 61.812 72.222 13.94 0.01 0.00 3.69
1381 4532 3.812019 CCCGGACCGTGACGAGAG 61.812 72.222 13.94 0.00 0.00 3.20
1435 4592 0.167470 TGTCGGAGTTAGCGACGAAG 59.833 55.000 0.00 0.00 37.08 3.79
1634 4791 0.378610 GGGCATAAAAGACAGAGCGC 59.621 55.000 0.00 0.00 0.00 5.92
1636 4793 2.620585 GGATGGGCATAAAAGACAGAGC 59.379 50.000 0.00 0.00 0.00 4.09
1695 4852 2.972713 CCTAGCAGCCCACTCCTATAAA 59.027 50.000 0.00 0.00 0.00 1.40
1696 4853 2.090719 ACCTAGCAGCCCACTCCTATAA 60.091 50.000 0.00 0.00 0.00 0.98
1697 4854 1.503784 ACCTAGCAGCCCACTCCTATA 59.496 52.381 0.00 0.00 0.00 1.31
1698 4855 0.266152 ACCTAGCAGCCCACTCCTAT 59.734 55.000 0.00 0.00 0.00 2.57
1705 4862 2.284331 TTCCGACCTAGCAGCCCA 60.284 61.111 0.00 0.00 0.00 5.36
1706 4863 2.187163 GTTCCGACCTAGCAGCCC 59.813 66.667 0.00 0.00 0.00 5.19
1728 4885 3.181510 CCAATCTTTAGTACAGCCGTTGC 60.182 47.826 0.00 0.00 37.95 4.17
1731 4888 2.835764 TCCCAATCTTTAGTACAGCCGT 59.164 45.455 0.00 0.00 0.00 5.68
1732 4889 3.536956 TCCCAATCTTTAGTACAGCCG 57.463 47.619 0.00 0.00 0.00 5.52
1733 4890 5.067805 CCAAATCCCAATCTTTAGTACAGCC 59.932 44.000 0.00 0.00 0.00 4.85
1735 4892 7.338710 TCTCCAAATCCCAATCTTTAGTACAG 58.661 38.462 0.00 0.00 0.00 2.74
1736 4893 7.265599 TCTCCAAATCCCAATCTTTAGTACA 57.734 36.000 0.00 0.00 0.00 2.90
1737 4894 9.847224 TTATCTCCAAATCCCAATCTTTAGTAC 57.153 33.333 0.00 0.00 0.00 2.73
1739 4896 7.503902 GCTTATCTCCAAATCCCAATCTTTAGT 59.496 37.037 0.00 0.00 0.00 2.24
1751 4908 1.070309 CGCGCTGCTTATCTCCAAATC 60.070 52.381 5.56 0.00 0.00 2.17
1784 4941 1.760268 GCATCCTTTCGAGCAGAGCG 61.760 60.000 0.00 0.00 0.00 5.03
1787 4944 2.408271 ATTGCATCCTTTCGAGCAGA 57.592 45.000 0.00 0.00 38.35 4.26
1824 4981 8.958060 TTCATCTATAAGAGGCTAACAGGTAT 57.042 34.615 0.00 0.00 0.00 2.73
1870 5027 8.094548 AGCAGAGTGTGAAATTGTACTATGTAA 58.905 33.333 0.00 0.00 35.46 2.41
1871 5028 7.611770 AGCAGAGTGTGAAATTGTACTATGTA 58.388 34.615 0.00 0.00 35.46 2.29
1873 5030 6.974932 AGCAGAGTGTGAAATTGTACTATG 57.025 37.500 0.00 0.00 35.95 2.23
1878 5035 5.244755 TGCATAGCAGAGTGTGAAATTGTA 58.755 37.500 0.00 0.00 33.32 2.41
1879 5036 4.074259 TGCATAGCAGAGTGTGAAATTGT 58.926 39.130 0.00 0.00 33.32 2.71
1880 5037 4.690184 TGCATAGCAGAGTGTGAAATTG 57.310 40.909 0.00 0.00 33.32 2.32
1881 5038 5.909621 ATTGCATAGCAGAGTGTGAAATT 57.090 34.783 0.00 0.00 40.61 1.82
1882 5039 6.615264 CTATTGCATAGCAGAGTGTGAAAT 57.385 37.500 0.00 0.00 40.61 2.17
1895 5052 5.075493 AGGAAATTGAGGGCTATTGCATAG 58.925 41.667 0.66 0.00 41.91 2.23
1954 5111 1.956477 GCACTGCAGAGAAAAAGGGAA 59.044 47.619 23.35 0.00 0.00 3.97
2022 5179 2.977914 TCATCTTTGCTCCTCTTTCCG 58.022 47.619 0.00 0.00 0.00 4.30
2093 5250 4.642437 TGATGGAAACTGTAAAGCACAACA 59.358 37.500 0.00 0.00 36.48 3.33
2149 5306 5.268118 TGACTGTCCAGCAATATCTACAG 57.732 43.478 5.17 0.00 40.08 2.74
2170 5327 4.449743 CCATGTTCAGCAAACCAGAAAATG 59.550 41.667 0.00 0.00 36.95 2.32
2393 5551 3.254470 TGCTACGAATTCGGGATTCAA 57.746 42.857 29.79 7.62 43.59 2.69
2417 5577 8.721478 GCTGAAACATGATACTTTTACTTCTGA 58.279 33.333 0.00 0.00 0.00 3.27
2423 5583 9.846248 AATGAAGCTGAAACATGATACTTTTAC 57.154 29.630 0.00 0.00 0.00 2.01
2431 5591 8.622157 CATCTAAGAATGAAGCTGAAACATGAT 58.378 33.333 0.00 0.00 0.00 2.45
2466 5632 3.205507 AGAGCTTGATAGTCCCACCTAGA 59.794 47.826 0.00 0.00 0.00 2.43
2495 5661 8.618702 TCTCGGTCGAGAAAAATAGTATAGAT 57.381 34.615 19.09 0.00 46.89 1.98
2668 5838 4.990426 GTCGCTTAGGTAAAACTGGTTACA 59.010 41.667 6.04 0.00 35.96 2.41
2669 5839 4.990426 TGTCGCTTAGGTAAAACTGGTTAC 59.010 41.667 0.00 0.00 33.91 2.50
2676 5846 7.539366 TGCAAATAAATGTCGCTTAGGTAAAAC 59.461 33.333 0.00 0.00 0.00 2.43
2839 6009 4.307432 TCTCTTTCTTAGTTTGAGGTGCG 58.693 43.478 0.00 0.00 0.00 5.34
2949 6119 6.441088 TGCATACCAACACCATACCATATA 57.559 37.500 0.00 0.00 0.00 0.86
2956 6126 4.227864 TGACATGCATACCAACACCATA 57.772 40.909 0.00 0.00 0.00 2.74
2962 6132 3.181487 GGAACCATGACATGCATACCAAC 60.181 47.826 10.10 0.00 34.82 3.77
3082 6257 1.817099 CTTCTCAGCCGGGATGCAC 60.817 63.158 7.57 0.00 0.00 4.57
3091 6266 1.065854 ACATAGTGCCACTTCTCAGCC 60.066 52.381 1.02 0.00 0.00 4.85
3309 6488 3.338818 CTTTGAAGCTCGAGCAAACAA 57.661 42.857 36.87 31.06 45.16 2.83
3409 6589 2.106511 AGAGAAAAGGTTAGCAGTGGCA 59.893 45.455 0.00 0.00 44.61 4.92
3434 6614 4.019591 CCATGAGATCTCCTGCCATATTCA 60.020 45.833 20.03 0.00 0.00 2.57
3576 6756 2.945668 ACTTCTGCACAAAGGAAGACAC 59.054 45.455 16.89 0.00 39.52 3.67
3577 6757 3.281727 ACTTCTGCACAAAGGAAGACA 57.718 42.857 16.89 0.00 39.52 3.41
3578 6758 3.378427 ACAACTTCTGCACAAAGGAAGAC 59.622 43.478 16.89 0.00 39.52 3.01
3619 6801 5.530915 ACATGCTAAGAGTTTAACAGCAACA 59.469 36.000 10.95 0.00 34.42 3.33
3622 6804 5.107104 CGAACATGCTAAGAGTTTAACAGCA 60.107 40.000 9.64 9.64 35.24 4.41
3694 6876 2.298729 GGACAAGCAAAACCATAAGGCA 59.701 45.455 0.00 0.00 39.06 4.75
3701 6883 0.758685 CCCTGGGACAAGCAAAACCA 60.759 55.000 7.01 0.00 38.70 3.67
3725 6907 4.083643 CGATGTGTGCCTATCCATGATTTC 60.084 45.833 0.00 0.00 0.00 2.17
3885 7067 4.336280 AGAGAACAGGGCTTGGTAAATTC 58.664 43.478 0.44 0.00 0.00 2.17
3914 7096 5.954296 AAGTCATCTGTGGATTGACTTTG 57.046 39.130 10.79 0.00 41.58 2.77
3933 7115 4.273318 AGCTTTGGTTCACTTCAGAAAGT 58.727 39.130 0.00 0.00 46.80 2.66
3939 7121 6.058833 TGTGTATTAGCTTTGGTTCACTTCA 58.941 36.000 0.00 0.00 0.00 3.02
3940 7122 6.554334 TGTGTATTAGCTTTGGTTCACTTC 57.446 37.500 0.00 0.00 0.00 3.01
3988 7170 6.348458 GCGCCAATAGTTGCTCATGAATATAA 60.348 38.462 0.00 0.00 0.00 0.98
4006 7188 4.568072 TGGGTATATATCAAGCGCCAAT 57.432 40.909 2.29 0.00 0.00 3.16
4059 7241 5.313712 ACCTCAGGGTTAACAACAATGTAG 58.686 41.667 8.10 0.00 44.73 2.74
4071 7253 3.055385 GCAGTGATGTTACCTCAGGGTTA 60.055 47.826 0.00 0.00 44.73 2.85
4144 7338 5.955959 TGCTCTAGTAATAACAGGGTTCTCA 59.044 40.000 0.00 0.00 0.00 3.27
4174 7368 5.755375 ACTAATAACAGGATTCTGCATGTCG 59.245 40.000 0.00 0.00 44.59 4.35
4179 7373 6.098266 TGCTCTACTAATAACAGGATTCTGCA 59.902 38.462 0.00 0.00 44.59 4.41
4197 7427 0.249238 CGTGCCAGATCCTGCTCTAC 60.249 60.000 5.74 0.00 0.00 2.59
4261 7491 3.050619 CAGAATACTGGCCGTATCGAAC 58.949 50.000 16.94 10.85 37.84 3.95
4279 7509 2.362736 GAAGCATCCATTGACTGCAGA 58.637 47.619 23.35 0.00 38.37 4.26
4294 7524 3.118261 CCTAGGTATGCAGAAAGGAAGCA 60.118 47.826 0.00 0.00 43.14 3.91
4346 7576 7.161404 GCCATTCCATAGTCTATACACATCAA 58.839 38.462 0.00 0.00 0.00 2.57
4378 7608 3.071479 TGGATTCCAGTTAACAACGAGC 58.929 45.455 8.61 0.00 36.23 5.03
4382 7612 3.120786 CGTCGTGGATTCCAGTTAACAAC 60.121 47.826 5.39 0.00 32.34 3.32
4399 7629 2.369629 CGAAACATCGTGGCGTCGT 61.370 57.895 0.00 0.00 0.00 4.34
4400 7630 2.369629 ACGAAACATCGTGGCGTCG 61.370 57.895 2.72 0.00 45.30 5.12
4410 7640 1.375523 GCACGGGGAGACGAAACAT 60.376 57.895 0.00 0.00 37.61 2.71
4411 7641 2.029964 GCACGGGGAGACGAAACA 59.970 61.111 0.00 0.00 37.61 2.83
4412 7642 2.027625 CAGCACGGGGAGACGAAAC 61.028 63.158 0.00 0.00 37.61 2.78
4421 7651 0.591170 CAACTAAACACAGCACGGGG 59.409 55.000 0.00 0.00 0.00 5.73
4425 7655 4.755123 ACAGATACCAACTAAACACAGCAC 59.245 41.667 0.00 0.00 0.00 4.40
4426 7656 4.968259 ACAGATACCAACTAAACACAGCA 58.032 39.130 0.00 0.00 0.00 4.41
4427 7657 7.549488 AGATTACAGATACCAACTAAACACAGC 59.451 37.037 0.00 0.00 0.00 4.40
4436 7666 8.596781 AGTGTTCTAGATTACAGATACCAACT 57.403 34.615 0.00 0.00 0.00 3.16
4461 7692 7.119699 CAGCTCAAGAAAGGTGTGACAATTATA 59.880 37.037 0.00 0.00 39.39 0.98
4463 7694 5.239306 CAGCTCAAGAAAGGTGTGACAATTA 59.761 40.000 0.00 0.00 39.39 1.40
4474 7705 8.044060 TGACATTTATAACAGCTCAAGAAAGG 57.956 34.615 0.00 0.00 0.00 3.11
4485 7716 8.853345 GTGCAAAAGACATGACATTTATAACAG 58.147 33.333 0.00 0.00 0.00 3.16
4507 7740 4.981806 AAAGCAAGAACTTAAGTGTGCA 57.018 36.364 27.59 0.00 35.11 4.57
4509 7742 5.343249 AGCAAAAGCAAGAACTTAAGTGTG 58.657 37.500 9.34 9.11 0.00 3.82
4534 7767 9.499479 AATTTCAGACATCACATATATCACCTC 57.501 33.333 0.00 0.00 0.00 3.85
4547 7781 4.289342 CACGCAAACAATTTCAGACATCA 58.711 39.130 0.00 0.00 0.00 3.07
4567 7801 3.596214 CTGTACCATCCAGTGTTACCAC 58.404 50.000 0.00 0.00 42.17 4.16
4580 7814 4.702131 GCACAAGAATTCTTCCTGTACCAT 59.298 41.667 17.91 0.00 32.79 3.55
4582 7816 3.125316 CGCACAAGAATTCTTCCTGTACC 59.875 47.826 17.91 7.81 32.79 3.34
4585 7819 2.851195 ACGCACAAGAATTCTTCCTGT 58.149 42.857 17.91 11.29 34.79 4.00
4605 7839 6.115446 CACATGCTAAGAAAGAGGACCATAA 58.885 40.000 0.00 0.00 0.00 1.90
4611 7845 2.912956 ACCCACATGCTAAGAAAGAGGA 59.087 45.455 0.00 0.00 0.00 3.71
4637 7871 4.704965 ACCGATTAGAAGGCTGGTTAATC 58.295 43.478 12.39 12.39 32.05 1.75
4648 7882 4.313277 TCAGCATCTGACCGATTAGAAG 57.687 45.455 0.00 0.00 35.39 2.85
4661 7895 5.690464 AAGGACAGTCTTATTCAGCATCT 57.310 39.130 0.00 0.00 0.00 2.90
4677 7911 6.869206 AGAGGCTTGTAATAAGTAAGGACA 57.131 37.500 0.00 0.00 0.00 4.02
4684 7918 7.337942 CCATTTCTGAAGAGGCTTGTAATAAGT 59.662 37.037 0.00 0.00 0.00 2.24
4701 7940 3.785887 ACTGGCCCTTATACCATTTCTGA 59.214 43.478 0.00 0.00 34.82 3.27
4704 7943 4.793201 AGAACTGGCCCTTATACCATTTC 58.207 43.478 0.00 4.48 42.75 2.17
4711 7950 4.270008 GCTCAAAAGAACTGGCCCTTATA 58.730 43.478 0.00 0.00 0.00 0.98
4712 7951 3.092301 GCTCAAAAGAACTGGCCCTTAT 58.908 45.455 0.00 0.00 0.00 1.73
4718 7957 4.488879 CAAATAGGCTCAAAAGAACTGGC 58.511 43.478 0.00 0.00 0.00 4.85
4742 7983 5.693104 TGAAAGCTGTGTACGTAAACCTTAG 59.307 40.000 13.34 5.50 0.00 2.18
4749 7990 7.544622 AGAGAATATGAAAGCTGTGTACGTAA 58.455 34.615 0.00 0.00 0.00 3.18
4781 8022 4.469227 AGAGTGTGGCATAAGAGAAGTGAT 59.531 41.667 0.00 0.00 0.00 3.06
4786 8027 3.196469 CAGGAGAGTGTGGCATAAGAGAA 59.804 47.826 0.00 0.00 0.00 2.87
4793 8034 1.279271 GTTACCAGGAGAGTGTGGCAT 59.721 52.381 0.00 0.00 37.34 4.40
4797 8038 3.804036 TGTTTGTTACCAGGAGAGTGTG 58.196 45.455 0.00 0.00 0.00 3.82
4798 8039 4.706842 ATGTTTGTTACCAGGAGAGTGT 57.293 40.909 0.00 0.00 0.00 3.55
4834 8075 1.166531 GCCGTTCCTGCAGTTCACTT 61.167 55.000 13.81 0.00 0.00 3.16
4835 8076 1.598130 GCCGTTCCTGCAGTTCACT 60.598 57.895 13.81 0.00 0.00 3.41
4913 8154 0.746563 CCTGTGTCGGTGTTGGTTGT 60.747 55.000 0.00 0.00 0.00 3.32
4949 8190 3.971245 TTTCTTTTGGGCTTGTTGTGT 57.029 38.095 0.00 0.00 0.00 3.72
4990 8233 2.355837 TGTCGAGCTGCCGTTGTC 60.356 61.111 0.00 0.00 0.00 3.18
5056 8299 1.684734 GGTCCGGAGCCTCAGGTTA 60.685 63.158 23.28 0.00 33.27 2.85
5061 8304 4.631740 TGGTGGTCCGGAGCCTCA 62.632 66.667 29.73 23.29 36.30 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.