Multiple sequence alignment - TraesCS6D01G358700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G358700 chr6D 100.000 4171 0 0 1 4171 451558304 451554134 0.000000e+00 7703.0
1 TraesCS6D01G358700 chr6D 93.974 614 18 10 3457 4061 341539955 341539352 0.000000e+00 911.0
2 TraesCS6D01G358700 chr6D 100.000 28 0 0 970 997 2269839 2269866 8.000000e-03 52.8
3 TraesCS6D01G358700 chr6A 90.807 4264 157 102 2 4171 597339323 597343445 0.000000e+00 5485.0
4 TraesCS6D01G358700 chr6B 89.445 4339 129 118 1 4171 685965515 685969692 0.000000e+00 5171.0
5 TraesCS6D01G358700 chr1D 94.327 617 17 10 3454 4061 409370585 409371192 0.000000e+00 929.0
6 TraesCS6D01G358700 chrUn 94.300 614 16 10 3457 4061 101283095 101282492 0.000000e+00 922.0
7 TraesCS6D01G358700 chrUn 94.300 614 14 12 3457 4061 21738571 21737970 0.000000e+00 920.0
8 TraesCS6D01G358700 chr5D 93.841 617 20 10 3454 4061 81017934 81018541 0.000000e+00 913.0
9 TraesCS6D01G358700 chr2D 93.984 615 17 11 3457 4061 520923525 520922921 0.000000e+00 913.0
10 TraesCS6D01G358700 chr4D 93.974 614 18 10 3457 4061 265067903 265067300 0.000000e+00 911.0
11 TraesCS6D01G358700 chr2B 88.442 199 12 3 3969 4167 328869306 328869119 3.240000e-56 230.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G358700 chr6D 451554134 451558304 4170 True 7703 7703 100.000 1 4171 1 chr6D.!!$R2 4170
1 TraesCS6D01G358700 chr6D 341539352 341539955 603 True 911 911 93.974 3457 4061 1 chr6D.!!$R1 604
2 TraesCS6D01G358700 chr6A 597339323 597343445 4122 False 5485 5485 90.807 2 4171 1 chr6A.!!$F1 4169
3 TraesCS6D01G358700 chr6B 685965515 685969692 4177 False 5171 5171 89.445 1 4171 1 chr6B.!!$F1 4170
4 TraesCS6D01G358700 chr1D 409370585 409371192 607 False 929 929 94.327 3454 4061 1 chr1D.!!$F1 607
5 TraesCS6D01G358700 chrUn 101282492 101283095 603 True 922 922 94.300 3457 4061 1 chrUn.!!$R2 604
6 TraesCS6D01G358700 chrUn 21737970 21738571 601 True 920 920 94.300 3457 4061 1 chrUn.!!$R1 604
7 TraesCS6D01G358700 chr5D 81017934 81018541 607 False 913 913 93.841 3454 4061 1 chr5D.!!$F1 607
8 TraesCS6D01G358700 chr2D 520922921 520923525 604 True 913 913 93.984 3457 4061 1 chr2D.!!$R1 604
9 TraesCS6D01G358700 chr4D 265067300 265067903 603 True 911 911 93.974 3457 4061 1 chr4D.!!$R1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
349 370 0.471022 ATGAAACAACCACCCCACCC 60.471 55.0 0.0 0.0 0.0 4.61 F
2068 2211 0.038310 AGTAGCCAGCCCACCTTTTC 59.962 55.0 0.0 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2321 2490 0.179134 GGATGGAGGTGTCGTCGAAG 60.179 60.0 0.00 0.0 0.0 3.79 R
3319 3513 0.323633 TGGTGGGTGGATGCATGAAG 60.324 55.0 2.46 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
321 342 1.480312 CCTTGGTGGTGAATCAACCCA 60.480 52.381 4.69 4.69 39.70 4.51
346 367 2.166907 AACATGAAACAACCACCCCA 57.833 45.000 0.00 0.00 0.00 4.96
347 368 1.408969 ACATGAAACAACCACCCCAC 58.591 50.000 0.00 0.00 0.00 4.61
348 369 0.678950 CATGAAACAACCACCCCACC 59.321 55.000 0.00 0.00 0.00 4.61
349 370 0.471022 ATGAAACAACCACCCCACCC 60.471 55.000 0.00 0.00 0.00 4.61
437 463 8.825667 TCGGAATAAAGAAAAAGAAAAATGGG 57.174 30.769 0.00 0.00 0.00 4.00
734 780 1.865622 GCTTGCGAGACGAGACGAG 60.866 63.158 4.70 0.00 30.27 4.18
763 825 7.823799 TCGGTATCGTGATATTAGGTGTGTATA 59.176 37.037 0.00 0.00 37.69 1.47
764 826 8.453320 CGGTATCGTGATATTAGGTGTGTATAA 58.547 37.037 0.00 0.00 0.00 0.98
985 1058 4.973856 AGGAGATTGGGATTGAGATTGAGA 59.026 41.667 0.00 0.00 0.00 3.27
986 1059 5.611835 AGGAGATTGGGATTGAGATTGAGAT 59.388 40.000 0.00 0.00 0.00 2.75
987 1060 6.102910 AGGAGATTGGGATTGAGATTGAGATT 59.897 38.462 0.00 0.00 0.00 2.40
988 1061 6.207025 GGAGATTGGGATTGAGATTGAGATTG 59.793 42.308 0.00 0.00 0.00 2.67
989 1062 6.907961 AGATTGGGATTGAGATTGAGATTGA 58.092 36.000 0.00 0.00 0.00 2.57
990 1063 6.999272 AGATTGGGATTGAGATTGAGATTGAG 59.001 38.462 0.00 0.00 0.00 3.02
991 1064 5.963214 TGGGATTGAGATTGAGATTGAGA 57.037 39.130 0.00 0.00 0.00 3.27
992 1065 6.511017 TGGGATTGAGATTGAGATTGAGAT 57.489 37.500 0.00 0.00 0.00 2.75
993 1066 6.907961 TGGGATTGAGATTGAGATTGAGATT 58.092 36.000 0.00 0.00 0.00 2.40
1363 1445 3.277211 CTGCCCTCGTTCGTTCCGA 62.277 63.158 0.00 0.00 0.00 4.55
1382 1464 2.467946 ATCGTTCAGTTCGTCGGCGT 62.468 55.000 10.18 0.00 39.49 5.68
1877 2011 0.872388 CCGTGACCAAAGTTACTGCC 59.128 55.000 0.00 0.00 30.49 4.85
1912 2051 1.890489 CTTTTCTTTTACCGGTGGGGG 59.110 52.381 19.93 5.20 41.60 5.40
2068 2211 0.038310 AGTAGCCAGCCCACCTTTTC 59.962 55.000 0.00 0.00 0.00 2.29
2076 2219 1.212250 GCCCACCTTTTCCTCCCCTA 61.212 60.000 0.00 0.00 0.00 3.53
2177 2342 6.769134 TGAACAGTAGTCTATTCGAATGGA 57.231 37.500 19.06 19.06 30.50 3.41
2178 2343 7.165460 TGAACAGTAGTCTATTCGAATGGAA 57.835 36.000 23.70 8.61 39.42 3.53
2179 2344 7.608153 TGAACAGTAGTCTATTCGAATGGAAA 58.392 34.615 23.70 13.39 38.36 3.13
2180 2345 8.092068 TGAACAGTAGTCTATTCGAATGGAAAA 58.908 33.333 23.70 13.07 38.36 2.29
2181 2346 8.480643 AACAGTAGTCTATTCGAATGGAAAAG 57.519 34.615 23.70 11.56 38.36 2.27
2210 2375 1.076332 AAAGTAGTGGCGTCGATTGC 58.924 50.000 0.00 4.18 0.00 3.56
2231 2396 1.673665 GCTGCAGTGAACTGGGAGG 60.674 63.158 16.64 0.00 43.94 4.30
2321 2490 4.459089 GAGTGGCTGTCGGGGCTC 62.459 72.222 0.00 0.00 0.00 4.70
2345 2514 2.187946 GACACCTCCATCCCGCAG 59.812 66.667 0.00 0.00 0.00 5.18
2489 2661 3.774702 GAGGACGGCGCGAACAAC 61.775 66.667 12.10 0.00 0.00 3.32
2522 2694 1.454201 TGAACAACAACAACAGCGGA 58.546 45.000 0.00 0.00 0.00 5.54
2525 2697 0.107410 ACAACAACAACAGCGGAGGA 60.107 50.000 0.00 0.00 0.00 3.71
2780 2952 3.756893 TCCTACTCGGAGGAGCCT 58.243 61.111 11.99 0.00 44.48 4.58
2792 2964 1.378250 GGAGCCTGAGTGCATTGCT 60.378 57.895 10.49 0.00 35.49 3.91
2897 3069 4.400961 GAGGAAGGCAGCGGCACT 62.401 66.667 11.88 2.39 43.71 4.40
2996 3171 0.034670 GGCCCAAGACTCTCTGCAAT 60.035 55.000 0.00 0.00 0.00 3.56
3023 3198 2.048503 GTGCGCTACAAGTCCGGT 60.049 61.111 9.73 0.00 0.00 5.28
3038 3213 3.387947 GGTCGCCTCTTCCCGGAA 61.388 66.667 0.73 0.00 0.00 4.30
3137 3312 1.304134 GGTTGAACCCAAGGGCGAT 60.304 57.895 2.08 0.00 39.32 4.58
3143 3318 2.190578 CCCAAGGGCGATGACCTC 59.809 66.667 0.00 0.00 42.44 3.85
3290 3484 4.407365 TCCAACTAGTCAGTCAGTCATCA 58.593 43.478 0.00 0.00 32.29 3.07
3296 3490 2.096657 AGTCAGTCAGTCATCATCGTCG 59.903 50.000 0.00 0.00 0.00 5.12
3297 3491 2.084546 TCAGTCAGTCATCATCGTCGT 58.915 47.619 0.00 0.00 0.00 4.34
3298 3492 2.096013 TCAGTCAGTCATCATCGTCGTC 59.904 50.000 0.00 0.00 0.00 4.20
3299 3493 2.084546 AGTCAGTCATCATCGTCGTCA 58.915 47.619 0.00 0.00 0.00 4.35
3300 3494 2.685388 AGTCAGTCATCATCGTCGTCAT 59.315 45.455 0.00 0.00 0.00 3.06
3301 3495 2.786027 GTCAGTCATCATCGTCGTCATG 59.214 50.000 0.00 0.00 0.00 3.07
3302 3496 2.122564 CAGTCATCATCGTCGTCATGG 58.877 52.381 0.00 0.00 0.00 3.66
3303 3497 0.855349 GTCATCATCGTCGTCATGGC 59.145 55.000 0.00 0.00 0.00 4.40
3304 3498 0.459489 TCATCATCGTCGTCATGGCA 59.541 50.000 0.00 0.00 0.00 4.92
3305 3499 0.857287 CATCATCGTCGTCATGGCAG 59.143 55.000 0.00 0.00 0.00 4.85
3306 3500 0.461548 ATCATCGTCGTCATGGCAGT 59.538 50.000 0.00 0.00 0.00 4.40
3307 3501 0.458370 TCATCGTCGTCATGGCAGTG 60.458 55.000 0.00 0.00 0.00 3.66
3308 3502 1.811266 ATCGTCGTCATGGCAGTGC 60.811 57.895 6.55 6.55 0.00 4.40
3309 3503 2.230994 ATCGTCGTCATGGCAGTGCT 62.231 55.000 16.11 0.00 0.00 4.40
3310 3504 2.029288 CGTCGTCATGGCAGTGCTT 61.029 57.895 16.11 0.00 0.00 3.91
3311 3505 0.735978 CGTCGTCATGGCAGTGCTTA 60.736 55.000 16.11 5.00 0.00 3.09
3312 3506 1.002366 GTCGTCATGGCAGTGCTTAG 58.998 55.000 16.11 5.00 0.00 2.18
3313 3507 0.740868 TCGTCATGGCAGTGCTTAGC 60.741 55.000 16.11 0.00 0.00 3.09
3314 3508 1.020861 CGTCATGGCAGTGCTTAGCA 61.021 55.000 16.11 1.39 35.60 3.49
3315 3509 1.386533 GTCATGGCAGTGCTTAGCAT 58.613 50.000 16.11 6.92 41.91 3.79
3316 3510 1.747355 GTCATGGCAGTGCTTAGCATT 59.253 47.619 16.11 2.48 41.91 3.56
3317 3511 1.746787 TCATGGCAGTGCTTAGCATTG 59.253 47.619 22.60 22.60 46.54 2.82
3381 3578 2.040012 AGTCAGCATCCATCCATCCATC 59.960 50.000 0.00 0.00 0.00 3.51
3393 3590 0.819259 CATCCATCAAATCGCCGGGT 60.819 55.000 2.18 0.00 0.00 5.28
3670 3888 4.278419 AGTCAATTAGGAAAGTTGGTGTGC 59.722 41.667 0.00 0.00 0.00 4.57
3671 3889 4.278419 GTCAATTAGGAAAGTTGGTGTGCT 59.722 41.667 0.00 0.00 0.00 4.40
3700 3927 5.334724 GCAAGAGTGAAGTCAAGGAGATTTG 60.335 44.000 0.00 0.00 0.00 2.32
3701 3928 5.559148 AGAGTGAAGTCAAGGAGATTTGT 57.441 39.130 0.00 0.00 0.00 2.83
3702 3929 6.672266 AGAGTGAAGTCAAGGAGATTTGTA 57.328 37.500 0.00 0.00 0.00 2.41
3703 3930 7.067496 AGAGTGAAGTCAAGGAGATTTGTAA 57.933 36.000 0.00 0.00 0.00 2.41
3890 4127 9.048446 TGGTGTCTTTCTTGTGTTTTATACTAC 57.952 33.333 0.00 0.00 0.00 2.73
4032 4275 3.244249 ACTTCTTCTTCCCCTGTTTCTCG 60.244 47.826 0.00 0.00 0.00 4.04
4065 4309 3.689347 TGCCTCTATGCAACTTGTGATT 58.311 40.909 0.00 0.00 38.56 2.57
4067 4311 5.439721 TGCCTCTATGCAACTTGTGATTAT 58.560 37.500 0.00 0.00 38.56 1.28
4074 4318 5.233957 TGCAACTTGTGATTATCCAATCG 57.766 39.130 0.00 0.00 43.06 3.34
4144 4398 0.578683 CGCCGCAACATCATCAGTAG 59.421 55.000 0.00 0.00 0.00 2.57
4147 4401 3.393800 GCCGCAACATCATCAGTAGTAT 58.606 45.455 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.254014 CTGCGTTTTCACTGCCCCG 62.254 63.158 0.00 0.00 0.00 5.73
190 193 1.372997 GAGCAGAGGACGCGTCAAA 60.373 57.895 37.26 0.00 0.00 2.69
321 342 3.132111 GGTGGTTGTTTCATGTTTGGTCT 59.868 43.478 0.00 0.00 0.00 3.85
437 463 1.206578 CATGTGACGTGCGGGTTTC 59.793 57.895 0.00 0.00 0.00 2.78
446 472 2.805353 GAGACGCGCATGTGACGT 60.805 61.111 22.41 22.41 43.83 4.34
537 565 4.724697 CAAAGTGACGGCAGCGCG 62.725 66.667 0.00 0.00 0.00 6.86
538 566 2.387125 TTTCAAAGTGACGGCAGCGC 62.387 55.000 0.00 0.00 0.00 5.92
724 770 2.410006 CGATACCGATTCTCGTCTCGTC 60.410 54.545 0.00 0.00 38.40 4.20
725 771 1.526041 CGATACCGATTCTCGTCTCGT 59.474 52.381 0.00 0.00 38.40 4.18
726 772 1.526041 ACGATACCGATTCTCGTCTCG 59.474 52.381 0.00 9.52 41.42 4.04
727 773 2.543012 TCACGATACCGATTCTCGTCTC 59.457 50.000 0.00 0.00 43.21 3.36
728 774 2.558378 TCACGATACCGATTCTCGTCT 58.442 47.619 0.00 0.00 43.21 4.18
734 780 6.527023 CACACCTAATATCACGATACCGATTC 59.473 42.308 0.00 0.00 39.50 2.52
763 825 5.478407 CAAATTAAGACAAGGCCGGATTTT 58.522 37.500 5.05 0.00 0.00 1.82
764 826 4.081697 CCAAATTAAGACAAGGCCGGATTT 60.082 41.667 5.05 0.00 0.00 2.17
985 1058 1.602311 GCCATCGCCTCAATCTCAAT 58.398 50.000 0.00 0.00 0.00 2.57
986 1059 0.811219 CGCCATCGCCTCAATCTCAA 60.811 55.000 0.00 0.00 0.00 3.02
987 1060 1.227350 CGCCATCGCCTCAATCTCA 60.227 57.895 0.00 0.00 0.00 3.27
988 1061 0.943359 CTCGCCATCGCCTCAATCTC 60.943 60.000 0.00 0.00 35.26 2.75
989 1062 1.068753 CTCGCCATCGCCTCAATCT 59.931 57.895 0.00 0.00 35.26 2.40
990 1063 2.602322 GCTCGCCATCGCCTCAATC 61.602 63.158 0.00 0.00 35.26 2.67
991 1064 2.590007 GCTCGCCATCGCCTCAAT 60.590 61.111 0.00 0.00 35.26 2.57
1071 1144 1.745489 GATGTGGTCGAACAGCCCC 60.745 63.158 1.63 0.00 32.52 5.80
1344 1426 2.654877 GGAACGAACGAGGGCAGA 59.345 61.111 0.14 0.00 0.00 4.26
1363 1445 1.800315 CGCCGACGAACTGAACGAT 60.800 57.895 0.00 0.00 43.93 3.73
1450 1532 4.500887 CGTATCCGCTCCTCCTTAAAATCA 60.501 45.833 0.00 0.00 0.00 2.57
1560 1647 0.621862 AGGCAGGGAGGGGTAAGAAG 60.622 60.000 0.00 0.00 0.00 2.85
1561 1648 0.620700 GAGGCAGGGAGGGGTAAGAA 60.621 60.000 0.00 0.00 0.00 2.52
1830 1959 3.391382 CCGACACCTCCACCTCCC 61.391 72.222 0.00 0.00 0.00 4.30
2068 2211 0.979187 TGCGTAAAGGGTAGGGGAGG 60.979 60.000 0.00 0.00 0.00 4.30
2076 2219 1.394618 TTTGCTGTTGCGTAAAGGGT 58.605 45.000 0.00 0.00 43.34 4.34
2210 2375 1.970114 CCCAGTTCACTGCAGCCTG 60.970 63.158 15.27 14.11 42.47 4.85
2231 2396 2.755103 GGAATCCCATGTCAGAAACACC 59.245 50.000 0.00 0.00 41.75 4.16
2321 2490 0.179134 GGATGGAGGTGTCGTCGAAG 60.179 60.000 0.00 0.00 0.00 3.79
2489 2661 2.672188 TGTTCATGTTAACGTTGGCG 57.328 45.000 11.99 0.00 44.93 5.69
2498 2670 4.346970 CGCTGTTGTTGTTGTTCATGTTA 58.653 39.130 0.00 0.00 0.00 2.41
2522 2694 2.473760 CGACGACGCTGAGGATCCT 61.474 63.158 16.13 16.13 0.00 3.24
2525 2697 2.792599 GTCGACGACGCTGAGGAT 59.207 61.111 12.94 0.00 39.58 3.24
2546 2718 2.488355 GAGGACGACGCCGATGAA 59.512 61.111 0.00 0.00 39.50 2.57
2780 2952 0.397564 TGGACTCAGCAATGCACTCA 59.602 50.000 8.35 0.00 0.00 3.41
2792 2964 2.343758 GGCTGCGAGTTGGACTCA 59.656 61.111 8.62 0.00 45.30 3.41
2909 3084 2.997315 CACCTCCTCACCTCGCCA 60.997 66.667 0.00 0.00 0.00 5.69
3023 3198 1.397390 GGTATTCCGGGAAGAGGCGA 61.397 60.000 15.72 0.00 0.00 5.54
3272 3462 4.265893 ACGATGATGACTGACTGACTAGT 58.734 43.478 0.00 0.00 40.66 2.57
3290 3484 1.811266 GCACTGCCATGACGACGAT 60.811 57.895 0.00 0.00 0.00 3.73
3296 3490 1.386533 ATGCTAAGCACTGCCATGAC 58.613 50.000 0.00 0.00 43.04 3.06
3297 3491 1.746787 CAATGCTAAGCACTGCCATGA 59.253 47.619 0.00 0.00 43.04 3.07
3298 3492 2.203800 CAATGCTAAGCACTGCCATG 57.796 50.000 0.00 0.00 43.04 3.66
3303 3497 1.814394 TGAAGGCAATGCTAAGCACTG 59.186 47.619 4.82 0.00 43.04 3.66
3304 3498 2.205022 TGAAGGCAATGCTAAGCACT 57.795 45.000 4.82 0.00 43.04 4.40
3305 3499 2.805845 CATGAAGGCAATGCTAAGCAC 58.194 47.619 4.82 0.00 43.04 4.40
3306 3500 1.135527 GCATGAAGGCAATGCTAAGCA 59.864 47.619 4.82 0.00 44.86 3.91
3307 3501 1.135527 TGCATGAAGGCAATGCTAAGC 59.864 47.619 17.10 2.19 41.65 3.09
3317 3511 1.380246 TGGGTGGATGCATGAAGGC 60.380 57.895 2.46 0.00 0.00 4.35
3318 3512 1.039233 GGTGGGTGGATGCATGAAGG 61.039 60.000 2.46 0.00 0.00 3.46
3319 3513 0.323633 TGGTGGGTGGATGCATGAAG 60.324 55.000 2.46 0.00 0.00 3.02
3320 3514 0.335705 ATGGTGGGTGGATGCATGAA 59.664 50.000 2.46 0.00 0.00 2.57
3381 3578 0.884704 CCAGGATACCCGGCGATTTG 60.885 60.000 9.30 0.00 37.58 2.32
3393 3590 4.039973 CCCTATTGAACTAACGCCAGGATA 59.960 45.833 0.00 0.00 0.00 2.59
3671 3889 4.588951 TCCTTGACTTCACTCTTGCTTAGA 59.411 41.667 0.00 0.00 0.00 2.10
3700 3927 7.958053 TCTCTAACTTAGCAAACCAACTTAC 57.042 36.000 0.00 0.00 0.00 2.34
3701 3928 8.967664 TTTCTCTAACTTAGCAAACCAACTTA 57.032 30.769 0.00 0.00 0.00 2.24
3702 3929 7.875327 TTTCTCTAACTTAGCAAACCAACTT 57.125 32.000 0.00 0.00 0.00 2.66
3703 3930 7.556635 AGTTTTCTCTAACTTAGCAAACCAACT 59.443 33.333 11.09 0.00 34.81 3.16
3940 4183 2.357009 GGCAACAAGGCATGATGACTAG 59.643 50.000 0.00 0.00 31.94 2.57
4010 4253 3.244249 CGAGAAACAGGGGAAGAAGAAGT 60.244 47.826 0.00 0.00 0.00 3.01
4032 4275 3.619038 GCATAGAGGCAGTTAGTTCACAC 59.381 47.826 0.00 0.00 0.00 3.82
4065 4309 1.486310 AGTGCTCAAGGCGATTGGATA 59.514 47.619 0.00 0.00 45.43 2.59
4067 4311 0.674581 CAGTGCTCAAGGCGATTGGA 60.675 55.000 0.00 0.00 45.43 3.53
4074 4318 0.036952 TCAGTAGCAGTGCTCAAGGC 60.037 55.000 23.64 8.08 40.44 4.35
4144 4398 8.716619 TGCGTGTCTTGTTGTTTTATTAATAC 57.283 30.769 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.