Multiple sequence alignment - TraesCS6D01G357600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G357600 chr6D 100.000 3909 0 0 1 3909 451097641 451101549 0.000000e+00 7219.0
1 TraesCS6D01G357600 chr6B 89.432 3009 200 53 774 3731 685151103 685154044 0.000000e+00 3687.0
2 TraesCS6D01G357600 chr6B 96.154 130 4 1 3732 3860 685154088 685154217 1.100000e-50 211.0
3 TraesCS6D01G357600 chr6A 86.980 3195 273 81 127 3274 596743783 596746881 0.000000e+00 3463.0
4 TraesCS6D01G357600 chr6A 88.679 318 33 2 3304 3620 596747014 596747329 6.130000e-103 385.0
5 TraesCS6D01G357600 chr2D 87.990 841 59 23 1024 1852 467057903 467058713 0.000000e+00 955.0
6 TraesCS6D01G357600 chr2D 84.030 526 66 14 2232 2754 467059217 467059727 1.260000e-134 490.0
7 TraesCS6D01G357600 chr2A 87.381 840 75 21 1016 1844 607908326 607909145 0.000000e+00 935.0
8 TraesCS6D01G357600 chr2A 84.542 524 65 13 2232 2752 607909641 607910151 4.510000e-139 505.0
9 TraesCS6D01G357600 chr2A 91.964 112 9 0 1 112 203901533 203901644 1.450000e-34 158.0
10 TraesCS6D01G357600 chr2B 87.648 842 54 31 1041 1866 545755410 545756217 0.000000e+00 933.0
11 TraesCS6D01G357600 chr2B 85.361 526 63 10 2232 2754 545756720 545757234 2.070000e-147 532.0
12 TraesCS6D01G357600 chr2B 90.909 297 22 2 1699 1995 9921864 9922155 1.020000e-105 394.0
13 TraesCS6D01G357600 chr2B 91.525 177 15 0 1468 1644 9921603 9921779 1.080000e-60 244.0
14 TraesCS6D01G357600 chr7B 90.476 294 23 2 1702 1995 348045196 348045484 2.200000e-102 383.0
15 TraesCS6D01G357600 chr7B 89.456 294 26 2 1702 1995 27649283 27649571 2.220000e-97 366.0
16 TraesCS6D01G357600 chr7B 81.818 99 13 5 1601 1696 237759655 237759751 1.160000e-10 78.7
17 TraesCS6D01G357600 chr3B 91.667 276 23 0 1720 1995 755583885 755584160 2.200000e-102 383.0
18 TraesCS6D01G357600 chr5A 83.410 434 47 15 1275 1696 639311731 639311311 2.850000e-101 379.0
19 TraesCS6D01G357600 chr1B 89.796 294 25 2 1702 1995 490598617 490598905 4.770000e-99 372.0
20 TraesCS6D01G357600 chr1B 83.820 377 44 14 1275 1644 490598163 490598529 3.740000e-90 342.0
21 TraesCS6D01G357600 chr4A 89.492 295 25 3 1702 1995 665985576 665985287 6.170000e-98 368.0
22 TraesCS6D01G357600 chr4A 91.057 123 11 0 1 123 619131638 619131516 2.420000e-37 167.0
23 TraesCS6D01G357600 chr5B 89.456 294 26 2 1702 1995 680845855 680846143 2.220000e-97 366.0
24 TraesCS6D01G357600 chr3D 94.309 123 7 0 1 123 96446292 96446414 5.160000e-44 189.0
25 TraesCS6D01G357600 chrUn 91.870 123 10 0 1 123 10782241 10782363 5.190000e-39 172.0
26 TraesCS6D01G357600 chr5D 93.878 98 6 0 26 123 357067468 357067565 8.750000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G357600 chr6D 451097641 451101549 3908 False 7219.0 7219 100.0000 1 3909 1 chr6D.!!$F1 3908
1 TraesCS6D01G357600 chr6B 685151103 685154217 3114 False 1949.0 3687 92.7930 774 3860 2 chr6B.!!$F1 3086
2 TraesCS6D01G357600 chr6A 596743783 596747329 3546 False 1924.0 3463 87.8295 127 3620 2 chr6A.!!$F1 3493
3 TraesCS6D01G357600 chr2D 467057903 467059727 1824 False 722.5 955 86.0100 1024 2754 2 chr2D.!!$F1 1730
4 TraesCS6D01G357600 chr2A 607908326 607910151 1825 False 720.0 935 85.9615 1016 2752 2 chr2A.!!$F2 1736
5 TraesCS6D01G357600 chr2B 545755410 545757234 1824 False 732.5 933 86.5045 1041 2754 2 chr2B.!!$F2 1713
6 TraesCS6D01G357600 chr2B 9921603 9922155 552 False 319.0 394 91.2170 1468 1995 2 chr2B.!!$F1 527
7 TraesCS6D01G357600 chr1B 490598163 490598905 742 False 357.0 372 86.8080 1275 1995 2 chr1B.!!$F1 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 133 0.028902 GTTTGGACAGTTGCGTGGAC 59.971 55.000 0.00 0.00 0.00 4.02 F
303 306 0.037447 GAGCCAAGGCCTCCCATATC 59.963 60.000 5.23 0.00 43.17 1.63 F
635 642 0.037590 TTATGCGACCATATGGGGCC 59.962 55.000 27.38 15.81 44.62 5.80 F
719 729 1.001378 GCTGCAACAATTTGTCCGACT 60.001 47.619 1.83 0.00 34.90 4.18 F
1384 1429 1.079819 ATGTTCGAGTCGCCCAGTG 60.080 57.895 7.92 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1873 1.202698 GCAGTGGAGAACTTGACACCT 60.203 52.381 0.00 0.00 36.83 4.00 R
1804 1921 1.270518 ACAGTAGTGTTCTGCCTGCAG 60.271 52.381 12.91 12.91 44.86 4.41 R
2517 2818 1.069823 ACCGGCTCTTGCATCTCTATG 59.930 52.381 0.00 0.00 41.91 2.23 R
2764 3065 2.810650 ACGCAAACGGCAATTTAAACA 58.189 38.095 0.00 0.00 46.04 2.83 R
3324 3729 0.685458 AGATCTGCCCATTGGGTTGC 60.685 55.000 22.82 9.38 46.51 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.252967 CACAATTTGCAGACCTAACATACA 57.747 37.500 0.00 0.00 0.00 2.29
33 34 6.676950 CACAATTTGCAGACCTAACATACAA 58.323 36.000 0.00 0.00 0.00 2.41
34 35 6.582295 CACAATTTGCAGACCTAACATACAAC 59.418 38.462 0.00 0.00 0.00 3.32
35 36 6.264292 ACAATTTGCAGACCTAACATACAACA 59.736 34.615 0.00 0.00 0.00 3.33
36 37 5.682943 TTTGCAGACCTAACATACAACAC 57.317 39.130 0.00 0.00 0.00 3.32
37 38 3.670625 TGCAGACCTAACATACAACACC 58.329 45.455 0.00 0.00 0.00 4.16
38 39 3.071747 TGCAGACCTAACATACAACACCA 59.928 43.478 0.00 0.00 0.00 4.17
39 40 4.069304 GCAGACCTAACATACAACACCAA 58.931 43.478 0.00 0.00 0.00 3.67
40 41 4.083484 GCAGACCTAACATACAACACCAAC 60.083 45.833 0.00 0.00 0.00 3.77
41 42 5.060506 CAGACCTAACATACAACACCAACA 58.939 41.667 0.00 0.00 0.00 3.33
42 43 5.529430 CAGACCTAACATACAACACCAACAA 59.471 40.000 0.00 0.00 0.00 2.83
43 44 6.206634 CAGACCTAACATACAACACCAACAAT 59.793 38.462 0.00 0.00 0.00 2.71
44 45 6.206634 AGACCTAACATACAACACCAACAATG 59.793 38.462 0.00 0.00 0.00 2.82
45 46 5.160641 CCTAACATACAACACCAACAATGC 58.839 41.667 0.00 0.00 0.00 3.56
46 47 3.658757 ACATACAACACCAACAATGCC 57.341 42.857 0.00 0.00 0.00 4.40
47 48 2.961741 ACATACAACACCAACAATGCCA 59.038 40.909 0.00 0.00 0.00 4.92
48 49 3.243704 ACATACAACACCAACAATGCCAC 60.244 43.478 0.00 0.00 0.00 5.01
49 50 1.189752 ACAACACCAACAATGCCACA 58.810 45.000 0.00 0.00 0.00 4.17
50 51 1.552337 ACAACACCAACAATGCCACAA 59.448 42.857 0.00 0.00 0.00 3.33
51 52 2.170187 ACAACACCAACAATGCCACAAT 59.830 40.909 0.00 0.00 0.00 2.71
52 53 2.801679 CAACACCAACAATGCCACAATC 59.198 45.455 0.00 0.00 0.00 2.67
53 54 2.318908 ACACCAACAATGCCACAATCT 58.681 42.857 0.00 0.00 0.00 2.40
54 55 2.036217 ACACCAACAATGCCACAATCTG 59.964 45.455 0.00 0.00 0.00 2.90
55 56 1.619827 ACCAACAATGCCACAATCTGG 59.380 47.619 0.00 0.00 44.08 3.86
56 57 1.894466 CCAACAATGCCACAATCTGGA 59.106 47.619 0.00 0.00 43.95 3.86
57 58 2.299582 CCAACAATGCCACAATCTGGAA 59.700 45.455 0.00 0.00 43.95 3.53
58 59 3.581755 CAACAATGCCACAATCTGGAAG 58.418 45.455 0.00 0.00 43.95 3.46
68 69 3.415186 TCTGGAAGATGTGGGCCC 58.585 61.111 17.59 17.59 38.67 5.80
69 70 2.276740 CTGGAAGATGTGGGCCCC 59.723 66.667 22.27 11.72 34.07 5.80
70 71 2.204291 TGGAAGATGTGGGCCCCT 60.204 61.111 22.27 5.74 0.00 4.79
71 72 1.856873 TGGAAGATGTGGGCCCCTT 60.857 57.895 22.27 15.61 0.00 3.95
72 73 1.076705 GGAAGATGTGGGCCCCTTC 60.077 63.158 23.43 23.43 35.52 3.46
73 74 1.452108 GAAGATGTGGGCCCCTTCG 60.452 63.158 22.27 0.00 0.00 3.79
74 75 1.910580 GAAGATGTGGGCCCCTTCGA 61.911 60.000 22.27 0.00 0.00 3.71
75 76 1.497309 AAGATGTGGGCCCCTTCGAA 61.497 55.000 22.27 0.00 0.00 3.71
76 77 1.452108 GATGTGGGCCCCTTCGAAG 60.452 63.158 22.27 18.51 0.00 3.79
77 78 2.198304 GATGTGGGCCCCTTCGAAGT 62.198 60.000 22.27 1.54 0.00 3.01
78 79 2.359975 GTGGGCCCCTTCGAAGTG 60.360 66.667 22.27 12.58 0.00 3.16
79 80 4.344865 TGGGCCCCTTCGAAGTGC 62.345 66.667 22.27 22.50 0.00 4.40
80 81 4.344865 GGGCCCCTTCGAAGTGCA 62.345 66.667 27.72 0.00 0.00 4.57
81 82 2.282180 GGCCCCTTCGAAGTGCAA 60.282 61.111 27.72 0.00 0.00 4.08
82 83 1.901464 GGCCCCTTCGAAGTGCAAA 60.901 57.895 27.72 0.00 0.00 3.68
83 84 1.250840 GGCCCCTTCGAAGTGCAAAT 61.251 55.000 27.72 0.00 0.00 2.32
84 85 0.603065 GCCCCTTCGAAGTGCAAATT 59.397 50.000 23.03 0.00 0.00 1.82
85 86 1.402852 GCCCCTTCGAAGTGCAAATTC 60.403 52.381 23.03 0.00 37.61 2.17
86 87 2.162681 CCCCTTCGAAGTGCAAATTCT 58.837 47.619 23.03 0.00 39.08 2.40
87 88 2.558359 CCCCTTCGAAGTGCAAATTCTT 59.442 45.455 23.03 0.00 39.08 2.52
88 89 3.005791 CCCCTTCGAAGTGCAAATTCTTT 59.994 43.478 23.03 0.00 39.08 2.52
89 90 3.983344 CCCTTCGAAGTGCAAATTCTTTG 59.017 43.478 23.03 3.61 39.08 2.77
101 102 3.942130 AATTCTTTGCCTGGTTAGTGC 57.058 42.857 0.00 0.00 0.00 4.40
102 103 2.656947 TTCTTTGCCTGGTTAGTGCT 57.343 45.000 0.00 0.00 0.00 4.40
103 104 1.896220 TCTTTGCCTGGTTAGTGCTG 58.104 50.000 0.00 0.00 0.00 4.41
104 105 0.242017 CTTTGCCTGGTTAGTGCTGC 59.758 55.000 0.00 0.00 0.00 5.25
105 106 0.467106 TTTGCCTGGTTAGTGCTGCA 60.467 50.000 0.00 0.00 0.00 4.41
106 107 0.467106 TTGCCTGGTTAGTGCTGCAA 60.467 50.000 2.77 0.00 36.46 4.08
107 108 0.467106 TGCCTGGTTAGTGCTGCAAA 60.467 50.000 2.77 0.00 0.00 3.68
108 109 0.673437 GCCTGGTTAGTGCTGCAAAA 59.327 50.000 2.77 0.00 0.00 2.44
109 110 1.602920 GCCTGGTTAGTGCTGCAAAAC 60.603 52.381 16.60 16.60 0.00 2.43
110 111 1.000274 CCTGGTTAGTGCTGCAAAACC 60.000 52.381 28.28 28.28 41.45 3.27
111 112 0.665835 TGGTTAGTGCTGCAAAACCG 59.334 50.000 28.61 0.00 43.53 4.44
112 113 0.666374 GGTTAGTGCTGCAAAACCGT 59.334 50.000 24.04 2.79 32.69 4.83
113 114 1.599419 GGTTAGTGCTGCAAAACCGTG 60.599 52.381 24.04 0.00 32.69 4.94
114 115 1.064952 GTTAGTGCTGCAAAACCGTGT 59.935 47.619 2.77 0.00 0.00 4.49
115 116 1.384525 TAGTGCTGCAAAACCGTGTT 58.615 45.000 2.77 0.00 0.00 3.32
116 117 0.530288 AGTGCTGCAAAACCGTGTTT 59.470 45.000 2.77 0.00 0.00 2.83
117 118 0.644843 GTGCTGCAAAACCGTGTTTG 59.355 50.000 2.77 3.75 40.72 2.93
118 119 0.459237 TGCTGCAAAACCGTGTTTGG 60.459 50.000 0.00 5.23 38.64 3.28
119 120 0.179124 GCTGCAAAACCGTGTTTGGA 60.179 50.000 7.76 5.40 38.64 3.53
120 121 1.555477 CTGCAAAACCGTGTTTGGAC 58.445 50.000 7.76 1.76 38.64 4.02
121 122 0.888619 TGCAAAACCGTGTTTGGACA 59.111 45.000 7.76 3.73 38.64 4.02
122 123 1.135257 TGCAAAACCGTGTTTGGACAG 60.135 47.619 7.76 0.00 38.64 3.51
123 124 1.135228 GCAAAACCGTGTTTGGACAGT 60.135 47.619 7.76 0.00 38.64 3.55
124 125 2.672760 GCAAAACCGTGTTTGGACAGTT 60.673 45.455 7.76 0.00 38.64 3.16
125 126 2.920490 CAAAACCGTGTTTGGACAGTTG 59.080 45.455 3.29 0.00 36.20 3.16
132 133 0.028902 GTTTGGACAGTTGCGTGGAC 59.971 55.000 0.00 0.00 0.00 4.02
147 148 2.288025 GGACGGGTAGCAAGGGTGA 61.288 63.158 0.00 0.00 0.00 4.02
148 149 1.623542 GGACGGGTAGCAAGGGTGAT 61.624 60.000 0.00 0.00 0.00 3.06
160 162 2.589540 GGTGATGGTGGCGATGGA 59.410 61.111 0.00 0.00 0.00 3.41
181 183 1.602237 GAATGCGGGAAGTGGAGGA 59.398 57.895 0.00 0.00 0.00 3.71
185 187 2.572284 CGGGAAGTGGAGGACGAC 59.428 66.667 0.00 0.00 0.00 4.34
204 207 3.330720 CGGGAGGAGGGTGCCTTT 61.331 66.667 0.00 0.00 38.73 3.11
232 235 3.636764 GTGGACTTGGTCAATTTGAAGGT 59.363 43.478 0.00 0.00 33.68 3.50
240 243 4.173256 GGTCAATTTGAAGGTATTTGGCG 58.827 43.478 0.00 0.00 0.00 5.69
243 246 3.866883 ATTTGAAGGTATTTGGCGTGG 57.133 42.857 0.00 0.00 0.00 4.94
246 249 1.202952 TGAAGGTATTTGGCGTGGGTT 60.203 47.619 0.00 0.00 0.00 4.11
247 250 1.890489 GAAGGTATTTGGCGTGGGTTT 59.110 47.619 0.00 0.00 0.00 3.27
256 259 1.098712 GGCGTGGGTTTGTTCTGTCA 61.099 55.000 0.00 0.00 0.00 3.58
262 265 2.441375 TGGGTTTGTTCTGTCAGATCCA 59.559 45.455 2.68 1.04 31.61 3.41
265 268 3.882888 GGTTTGTTCTGTCAGATCCAACA 59.117 43.478 20.87 13.05 0.00 3.33
274 277 3.580022 TGTCAGATCCAACATGACAGACT 59.420 43.478 9.90 0.00 46.17 3.24
278 281 4.869297 CAGATCCAACATGACAGACTCTTC 59.131 45.833 0.00 0.00 0.00 2.87
303 306 0.037447 GAGCCAAGGCCTCCCATATC 59.963 60.000 5.23 0.00 43.17 1.63
309 312 2.759795 GCCTCCCATATCTGCCCC 59.240 66.667 0.00 0.00 0.00 5.80
310 313 1.849823 GCCTCCCATATCTGCCCCT 60.850 63.158 0.00 0.00 0.00 4.79
323 326 2.702478 TCTGCCCCTGATATGAGTTGAG 59.298 50.000 0.00 0.00 0.00 3.02
326 329 2.549778 GCCCCTGATATGAGTTGAGCTC 60.550 54.545 6.82 6.82 44.36 4.09
327 330 2.038295 CCCCTGATATGAGTTGAGCTCC 59.962 54.545 12.15 0.00 43.48 4.70
334 337 0.768221 TGAGTTGAGCTCCAGGGGTT 60.768 55.000 12.15 0.00 43.48 4.11
344 347 2.421739 CAGGGGTTCCGGATAGCG 59.578 66.667 4.15 0.00 38.33 4.26
345 348 3.547513 AGGGGTTCCGGATAGCGC 61.548 66.667 4.15 14.13 38.33 5.92
346 349 3.857038 GGGGTTCCGGATAGCGCA 61.857 66.667 11.47 0.00 0.00 6.09
357 360 2.351060 CGGATAGCGCAAACGTATAGGA 60.351 50.000 11.47 0.00 42.83 2.94
369 372 6.128117 GCAAACGTATAGGATTGTTTTGAGGA 60.128 38.462 14.44 0.00 32.58 3.71
371 374 5.671493 ACGTATAGGATTGTTTTGAGGAGG 58.329 41.667 0.00 0.00 0.00 4.30
373 376 2.222227 AGGATTGTTTTGAGGAGGCC 57.778 50.000 0.00 0.00 0.00 5.19
375 378 0.811281 GATTGTTTTGAGGAGGCCGG 59.189 55.000 0.00 0.00 0.00 6.13
397 400 5.134661 GGGTGTAGATGCTCTTACTAGTCT 58.865 45.833 0.00 0.00 0.00 3.24
399 402 5.823570 GGTGTAGATGCTCTTACTAGTCTGA 59.176 44.000 0.00 0.00 0.00 3.27
414 418 7.913674 ACTAGTCTGATTTTCATTCAACTCC 57.086 36.000 0.00 0.00 0.00 3.85
417 421 4.009675 TCTGATTTTCATTCAACTCCGGG 58.990 43.478 0.00 0.00 0.00 5.73
418 422 2.491693 TGATTTTCATTCAACTCCGGGC 59.508 45.455 0.00 0.00 0.00 6.13
439 443 3.993736 GCTGTAAATCGTTTGGCCAATTT 59.006 39.130 21.26 18.50 0.00 1.82
442 446 6.532365 TGTAAATCGTTTGGCCAATTTTTC 57.468 33.333 21.26 14.16 0.00 2.29
443 447 5.467063 TGTAAATCGTTTGGCCAATTTTTCC 59.533 36.000 21.26 8.47 0.00 3.13
444 448 2.535012 TCGTTTGGCCAATTTTTCCC 57.465 45.000 21.26 0.76 0.00 3.97
448 452 3.629855 CGTTTGGCCAATTTTTCCCTTTT 59.370 39.130 21.26 0.00 0.00 2.27
451 455 3.814625 TGGCCAATTTTTCCCTTTTGTC 58.185 40.909 0.61 0.00 0.00 3.18
472 476 4.921515 GTCGGAAAAAGGATAGCCAAAAAC 59.078 41.667 0.00 0.00 36.29 2.43
475 479 5.755861 CGGAAAAAGGATAGCCAAAAACAAA 59.244 36.000 0.00 0.00 36.29 2.83
476 480 6.258947 CGGAAAAAGGATAGCCAAAAACAAAA 59.741 34.615 0.00 0.00 36.29 2.44
481 485 8.518430 AAAGGATAGCCAAAAACAAAACAAAT 57.482 26.923 0.00 0.00 36.29 2.32
484 488 7.772757 AGGATAGCCAAAAACAAAACAAATCAA 59.227 29.630 0.00 0.00 36.29 2.57
485 489 8.401709 GGATAGCCAAAAACAAAACAAATCAAA 58.598 29.630 0.00 0.00 0.00 2.69
486 490 9.949174 GATAGCCAAAAACAAAACAAATCAAAT 57.051 25.926 0.00 0.00 0.00 2.32
487 491 9.733219 ATAGCCAAAAACAAAACAAATCAAATG 57.267 25.926 0.00 0.00 0.00 2.32
495 499 8.450385 AACAAAACAAATCAAATGCACTTTTG 57.550 26.923 6.46 6.46 37.83 2.44
511 518 6.240665 GCACTTTTGCTTGTTTACTCAAAAC 58.759 36.000 0.00 0.00 46.17 2.43
525 532 4.429788 CTCAAAACGCGTTGAGCACTGT 62.430 50.000 27.34 3.61 45.84 3.55
544 551 6.427853 GCACTGTAGATCATGCAATTGGTATA 59.572 38.462 7.72 0.00 38.00 1.47
546 553 8.448615 CACTGTAGATCATGCAATTGGTATATG 58.551 37.037 7.72 0.00 0.00 1.78
548 555 8.922931 TGTAGATCATGCAATTGGTATATGTT 57.077 30.769 7.72 0.00 0.00 2.71
549 556 9.353431 TGTAGATCATGCAATTGGTATATGTTT 57.647 29.630 7.72 0.00 0.00 2.83
572 579 1.101331 AAGAAGAGTACTACCGCCGG 58.899 55.000 0.00 0.00 0.00 6.13
574 581 0.813821 GAAGAGTACTACCGCCGGTT 59.186 55.000 16.82 0.00 37.09 4.44
583 590 3.004862 ACTACCGCCGGTTCAAAATAAG 58.995 45.455 16.82 5.34 37.09 1.73
584 591 1.900245 ACCGCCGGTTCAAAATAAGT 58.100 45.000 1.02 0.00 27.29 2.24
588 595 2.224549 CGCCGGTTCAAAATAAGTGTCA 59.775 45.455 1.90 0.00 0.00 3.58
589 596 3.119990 CGCCGGTTCAAAATAAGTGTCAT 60.120 43.478 1.90 0.00 0.00 3.06
606 613 5.243060 AGTGTCATAGTTTTAAACAAGGGCC 59.757 40.000 10.60 0.00 0.00 5.80
607 614 4.216687 TGTCATAGTTTTAAACAAGGGCCG 59.783 41.667 10.60 0.00 0.00 6.13
610 617 1.958579 AGTTTTAAACAAGGGCCGGTC 59.041 47.619 10.60 0.00 0.00 4.79
618 625 3.724732 ACAAGGGCCGGTCTAAAATTA 57.275 42.857 5.77 0.00 0.00 1.40
629 636 5.642063 CCGGTCTAAAATTATGCGACCATAT 59.358 40.000 13.28 0.00 43.27 1.78
632 639 6.128007 GGTCTAAAATTATGCGACCATATGGG 60.128 42.308 25.55 10.03 42.77 4.00
635 642 0.037590 TTATGCGACCATATGGGGCC 59.962 55.000 27.38 15.81 44.62 5.80
651 658 1.473497 GGCCGAGGGAGGGAGTAATC 61.473 65.000 0.00 0.00 0.00 1.75
663 670 6.210984 GGGAGGGAGTAATCGATATACACTTT 59.789 42.308 0.00 0.00 0.00 2.66
664 671 7.091443 GGAGGGAGTAATCGATATACACTTTG 58.909 42.308 0.00 0.00 0.00 2.77
698 708 1.528309 CACAGACCGGGGCACTTTT 60.528 57.895 6.32 0.00 0.00 2.27
699 709 1.528309 ACAGACCGGGGCACTTTTG 60.528 57.895 6.32 0.00 0.00 2.44
711 721 3.678915 GCACTTTTGCTGCAACAATTT 57.321 38.095 15.72 0.00 46.17 1.82
712 722 3.356145 GCACTTTTGCTGCAACAATTTG 58.644 40.909 15.72 9.07 46.17 2.32
713 723 3.181508 GCACTTTTGCTGCAACAATTTGT 60.182 39.130 15.72 0.00 46.17 2.83
714 724 4.580528 CACTTTTGCTGCAACAATTTGTC 58.419 39.130 15.72 0.00 34.90 3.18
715 725 3.622612 ACTTTTGCTGCAACAATTTGTCC 59.377 39.130 15.72 0.00 34.90 4.02
716 726 1.850377 TTGCTGCAACAATTTGTCCG 58.150 45.000 11.69 0.00 34.90 4.79
717 727 1.028130 TGCTGCAACAATTTGTCCGA 58.972 45.000 0.00 0.00 34.90 4.55
718 728 1.268999 TGCTGCAACAATTTGTCCGAC 60.269 47.619 0.00 0.00 34.90 4.79
719 729 1.001378 GCTGCAACAATTTGTCCGACT 60.001 47.619 1.83 0.00 34.90 4.18
722 732 4.111916 CTGCAACAATTTGTCCGACTTTT 58.888 39.130 1.83 0.00 34.90 2.27
724 734 3.489416 GCAACAATTTGTCCGACTTTTCC 59.511 43.478 1.83 0.00 34.90 3.13
729 739 5.810074 ACAATTTGTCCGACTTTTCCTTTTG 59.190 36.000 0.00 0.00 0.00 2.44
741 751 1.838112 TCCTTTTGCCATGCTTCGAT 58.162 45.000 0.00 0.00 0.00 3.59
745 755 4.402155 TCCTTTTGCCATGCTTCGATATTT 59.598 37.500 0.00 0.00 0.00 1.40
746 756 4.741676 CCTTTTGCCATGCTTCGATATTTC 59.258 41.667 0.00 0.00 0.00 2.17
748 758 1.872952 TGCCATGCTTCGATATTTCGG 59.127 47.619 5.72 0.00 45.53 4.30
749 759 2.143122 GCCATGCTTCGATATTTCGGA 58.857 47.619 5.72 0.00 45.53 4.55
752 762 4.497340 GCCATGCTTCGATATTTCGGAAAA 60.497 41.667 7.33 0.00 45.53 2.29
753 763 4.970003 CCATGCTTCGATATTTCGGAAAAC 59.030 41.667 7.33 2.06 45.53 2.43
754 764 4.609691 TGCTTCGATATTTCGGAAAACC 57.390 40.909 7.33 0.00 45.53 3.27
755 765 4.258543 TGCTTCGATATTTCGGAAAACCT 58.741 39.130 7.33 0.00 45.53 3.50
756 766 5.421277 TGCTTCGATATTTCGGAAAACCTA 58.579 37.500 7.33 0.00 45.53 3.08
757 767 6.053005 TGCTTCGATATTTCGGAAAACCTAT 58.947 36.000 7.33 1.26 45.53 2.57
758 768 7.211573 TGCTTCGATATTTCGGAAAACCTATA 58.788 34.615 7.33 0.00 45.53 1.31
850 875 3.391382 CCCTCCTCCCACCGACAC 61.391 72.222 0.00 0.00 0.00 3.67
971 1009 1.151450 CCTCCCATTCATTCCCCCG 59.849 63.158 0.00 0.00 0.00 5.73
974 1012 2.521708 CCATTCATTCCCCCGCCC 60.522 66.667 0.00 0.00 0.00 6.13
1004 1042 4.974438 ACTCTTCCCCACCCCGCA 62.974 66.667 0.00 0.00 0.00 5.69
1007 1045 4.506255 CTTCCCCACCCCGCATCC 62.506 72.222 0.00 0.00 0.00 3.51
1014 1052 4.880426 ACCCCGCATCCCCTCGAT 62.880 66.667 0.00 0.00 0.00 3.59
1384 1429 1.079819 ATGTTCGAGTCGCCCAGTG 60.080 57.895 7.92 0.00 0.00 3.66
1590 1666 4.148825 GTCCGCATGCCGTCCTCT 62.149 66.667 13.15 0.00 34.38 3.69
1645 1721 1.878522 GGCGACACTGGTATGCTCG 60.879 63.158 0.00 0.00 0.00 5.03
1681 1762 6.105333 TGTAATTTTTGTTCTGCTGCACTTT 58.895 32.000 0.00 0.00 0.00 2.66
1693 1774 3.251729 TGCTGCACTTTTCATCTCTGTTC 59.748 43.478 0.00 0.00 0.00 3.18
1756 1873 7.331026 CAGTTATTATCTCTGTCACCAAGGAA 58.669 38.462 0.00 0.00 0.00 3.36
1804 1921 3.236816 CATTGGAACTGCAAACATCGTC 58.763 45.455 0.00 0.00 0.00 4.20
1865 1982 4.875578 TCTTCTCCCCTGCTTAGTAGTA 57.124 45.455 0.00 0.00 0.00 1.82
1976 2153 5.766174 TCAACCTGATTGTTTACTGGTTACC 59.234 40.000 0.00 0.00 43.05 2.85
2020 2198 9.425893 CGATTTGATAGTTATGTTGATGTTGTC 57.574 33.333 0.00 0.00 0.00 3.18
2080 2258 3.004862 TGCAGTTCATAGATGCACACTG 58.995 45.455 0.00 9.98 44.56 3.66
2180 2468 3.181516 GCTGCCGTTACATCTTTTCTGAG 60.182 47.826 0.00 0.00 0.00 3.35
2224 2518 7.390718 ACAAACTAATCTTGATGAACCCTGTAC 59.609 37.037 0.00 0.00 0.00 2.90
2227 2521 3.868757 TCTTGATGAACCCTGTACTCG 57.131 47.619 0.00 0.00 0.00 4.18
2233 2527 3.928727 TGAACCCTGTACTCGTTAGTG 57.071 47.619 0.00 0.00 36.36 2.74
2308 2602 7.710676 ATCAGAGTACCATTTAGATATCGCT 57.289 36.000 0.00 0.00 0.00 4.93
2328 2624 3.062763 CTGTTGAGATGGTCAGTGACAC 58.937 50.000 24.20 13.99 36.21 3.67
2353 2649 9.877178 ACCAGTGAACAGAAAGTAGATTTATAG 57.123 33.333 0.00 0.00 0.00 1.31
2376 2672 4.008933 ACGAGGCCTGTGTGGAGC 62.009 66.667 12.00 0.00 38.35 4.70
2425 2723 7.492344 ACTTGCAAAATTTACTTCAGTTTGAGG 59.508 33.333 0.00 0.00 32.18 3.86
2517 2818 1.404391 CAGCCTGAGCAATCAACCATC 59.596 52.381 0.00 0.00 43.56 3.51
2762 3063 5.163301 TGCTTATCTTGCCTACTTTCCCTAG 60.163 44.000 0.00 0.00 0.00 3.02
2764 3065 6.632900 GCTTATCTTGCCTACTTTCCCTAGTT 60.633 42.308 0.00 0.00 0.00 2.24
2772 3073 7.235804 TGCCTACTTTCCCTAGTTGTTTAAAT 58.764 34.615 0.00 0.00 0.00 1.40
2783 3084 3.244111 AGTTGTTTAAATTGCCGTTTGCG 59.756 39.130 0.00 0.00 45.60 4.85
2796 3097 3.600786 GCCGTTTGCGTAACTATTGTTTC 59.399 43.478 0.00 0.00 35.09 2.78
2847 3148 9.959721 TTTTAGCTACTCTTGTATCTGGATTTT 57.040 29.630 0.00 0.00 0.00 1.82
2884 3185 8.486210 TGTTAGATTAGTGAATTATGCCTGTCT 58.514 33.333 0.00 0.00 0.00 3.41
2927 3228 7.706607 GTCATGGTTAGATTTAGCATTTTTCCC 59.293 37.037 0.00 0.00 31.80 3.97
2932 3233 7.122799 GGTTAGATTTAGCATTTTTCCCTGTCT 59.877 37.037 0.00 0.00 0.00 3.41
2950 3251 1.526575 CTGGGATTTGTGGCGCTGTT 61.527 55.000 7.64 0.00 0.00 3.16
2955 3256 0.968405 ATTTGTGGCGCTGTTTGGAT 59.032 45.000 7.64 0.00 0.00 3.41
2981 3282 2.449137 AGCCATAATTTCCAGCTGCT 57.551 45.000 8.66 0.00 31.23 4.24
2992 3293 2.703416 TCCAGCTGCTTGTACTGATTG 58.297 47.619 8.66 0.00 33.10 2.67
2994 3295 2.816087 CCAGCTGCTTGTACTGATTGTT 59.184 45.455 8.66 0.00 33.10 2.83
2995 3296 3.120060 CCAGCTGCTTGTACTGATTGTTC 60.120 47.826 8.66 0.00 33.10 3.18
2998 3299 4.823989 AGCTGCTTGTACTGATTGTTCTTT 59.176 37.500 0.00 0.00 0.00 2.52
3018 3320 3.272574 TCAGAAGTGGCAATCCATCTC 57.727 47.619 0.00 0.00 45.62 2.75
3029 3331 6.096001 GTGGCAATCCATCTCTTATCAGTTTT 59.904 38.462 0.00 0.00 45.62 2.43
3038 3340 8.446273 CCATCTCTTATCAGTTTTGTTAGTGTG 58.554 37.037 0.00 0.00 0.00 3.82
3039 3341 7.421530 TCTCTTATCAGTTTTGTTAGTGTGC 57.578 36.000 0.00 0.00 0.00 4.57
3040 3342 6.426937 TCTCTTATCAGTTTTGTTAGTGTGCC 59.573 38.462 0.00 0.00 0.00 5.01
3041 3343 6.058833 TCTTATCAGTTTTGTTAGTGTGCCA 58.941 36.000 0.00 0.00 0.00 4.92
3042 3344 6.544197 TCTTATCAGTTTTGTTAGTGTGCCAA 59.456 34.615 0.00 0.00 0.00 4.52
3043 3345 5.789643 ATCAGTTTTGTTAGTGTGCCAAT 57.210 34.783 0.00 0.00 0.00 3.16
3044 3346 5.590530 TCAGTTTTGTTAGTGTGCCAATT 57.409 34.783 0.00 0.00 0.00 2.32
3050 3352 2.884012 TGTTAGTGTGCCAATTCAGTGG 59.116 45.455 0.00 0.00 42.05 4.00
3068 3370 1.481772 TGGCAAGCCATAATTTCCAGC 59.518 47.619 10.24 0.00 41.89 4.85
3069 3371 1.758862 GGCAAGCCATAATTTCCAGCT 59.241 47.619 6.14 0.00 35.81 4.24
3070 3372 2.482490 GGCAAGCCATAATTTCCAGCTG 60.482 50.000 6.78 6.78 33.18 4.24
3073 3375 2.743553 AGCCATAATTTCCAGCTGCTT 58.256 42.857 8.66 1.31 31.23 3.91
3075 3377 2.428171 GCCATAATTTCCAGCTGCTTGA 59.572 45.455 8.66 0.00 0.00 3.02
3076 3378 3.119029 GCCATAATTTCCAGCTGCTTGAA 60.119 43.478 8.66 11.68 0.00 2.69
3077 3379 4.427312 CCATAATTTCCAGCTGCTTGAAC 58.573 43.478 14.91 0.00 0.00 3.18
3080 3382 2.346766 TTTCCAGCTGCTTGAACTGA 57.653 45.000 14.91 0.00 33.10 3.41
3083 3385 2.156917 TCCAGCTGCTTGAACTGATTG 58.843 47.619 8.66 0.00 33.10 2.67
3084 3386 1.884579 CCAGCTGCTTGAACTGATTGT 59.115 47.619 8.66 0.00 33.10 2.71
3085 3387 2.295349 CCAGCTGCTTGAACTGATTGTT 59.705 45.455 8.66 0.00 42.38 2.83
3141 3443 7.565680 AGTCCTATAACTAAACCCTGTGAATG 58.434 38.462 0.00 0.00 0.00 2.67
3171 3473 0.236449 GTTTACGGGGCTGTGAAACG 59.764 55.000 0.00 0.00 42.39 3.60
3184 3486 2.223641 TGTGAAACGAACTACGCAGTCT 60.224 45.455 0.00 0.00 46.94 3.24
3256 3558 5.984695 AGTTGCTGACAGTATGACTTAGA 57.015 39.130 3.99 0.00 39.69 2.10
3324 3729 1.614903 TGGACTGCTGCCAAAATGAAG 59.385 47.619 0.00 0.00 31.13 3.02
3358 3763 5.988561 GGGCAGATCTTCTAGAAACATACTG 59.011 44.000 6.63 11.90 0.00 2.74
3374 3779 4.397730 ACATACTGCACATCCGCAAATTAA 59.602 37.500 0.00 0.00 42.45 1.40
3375 3780 3.932545 ACTGCACATCCGCAAATTAAA 57.067 38.095 0.00 0.00 42.45 1.52
3376 3781 4.250116 ACTGCACATCCGCAAATTAAAA 57.750 36.364 0.00 0.00 42.45 1.52
3430 3835 4.700700 CATAGATTGGATGCTGACAGTCA 58.299 43.478 2.48 2.48 0.00 3.41
3432 3837 3.607741 AGATTGGATGCTGACAGTCAAG 58.392 45.455 4.41 0.42 0.00 3.02
3450 3855 3.002791 CAAGAAATTGCTACTCTCGCCA 58.997 45.455 0.00 0.00 0.00 5.69
3454 3859 2.231215 ATTGCTACTCTCGCCATGAC 57.769 50.000 0.00 0.00 0.00 3.06
3456 3861 0.173481 TGCTACTCTCGCCATGACAC 59.827 55.000 0.00 0.00 0.00 3.67
3461 3866 2.212900 CTCTCGCCATGACACGGTGA 62.213 60.000 16.29 3.45 40.71 4.02
3466 3871 1.299648 CCATGACACGGTGACCCAT 59.700 57.895 16.29 11.55 0.00 4.00
3474 3879 1.153168 CGGTGACCCATGCCCTTAG 60.153 63.158 0.00 0.00 0.00 2.18
3512 3917 5.916883 CAGGAACAACATTTCTTGATGTCAC 59.083 40.000 0.00 0.00 40.14 3.67
3549 3955 6.711277 TGACTAACTCAAAGTTGCTCCATAT 58.289 36.000 2.65 0.00 39.11 1.78
3558 3964 9.512435 CTCAAAGTTGCTCCATATAATTTCAAG 57.488 33.333 0.00 0.00 0.00 3.02
3621 4027 4.832248 ACCGAAAACAGATCTGCTCAATA 58.168 39.130 22.83 0.00 0.00 1.90
3622 4028 4.631813 ACCGAAAACAGATCTGCTCAATAC 59.368 41.667 22.83 7.10 0.00 1.89
3627 4033 2.103771 ACAGATCTGCTCAATACGGCAT 59.896 45.455 22.83 0.00 37.83 4.40
3632 4038 0.829990 TGCTCAATACGGCATCCTGA 59.170 50.000 0.00 0.00 33.23 3.86
3639 4045 2.046314 CGGCATCCTGAAACCGGT 60.046 61.111 0.00 0.00 41.95 5.28
3643 4049 1.026718 GCATCCTGAAACCGGTCCAG 61.027 60.000 22.94 22.94 0.00 3.86
3644 4050 0.324943 CATCCTGAAACCGGTCCAGT 59.675 55.000 25.80 12.69 0.00 4.00
3652 4058 2.265589 AACCGGTCCAGTTTCGAAAT 57.734 45.000 14.69 0.45 0.00 2.17
3657 4063 3.499157 CCGGTCCAGTTTCGAAATTGTTA 59.501 43.478 25.74 14.49 0.00 2.41
3658 4064 4.460505 CGGTCCAGTTTCGAAATTGTTAC 58.539 43.478 25.74 22.21 0.00 2.50
3679 4090 1.472552 GGGGCAAAACGAGCAAAACTT 60.473 47.619 0.00 0.00 0.00 2.66
3680 4091 1.592543 GGGCAAAACGAGCAAAACTTG 59.407 47.619 0.00 0.00 35.67 3.16
3684 4095 3.769536 CAAAACGAGCAAAACTTGAGGT 58.230 40.909 0.00 0.00 33.49 3.85
3692 4103 2.488347 GCAAAACTTGAGGTGGGGTAGA 60.488 50.000 0.00 0.00 0.00 2.59
3709 4120 6.155221 TGGGGTAGAGAATGCACAGATATATC 59.845 42.308 4.42 4.42 0.00 1.63
3710 4121 6.382570 GGGGTAGAGAATGCACAGATATATCT 59.617 42.308 9.57 9.57 37.72 1.98
3806 4263 5.426833 AGGATGTTTTAGGATACAGTGAGCT 59.573 40.000 0.00 0.00 41.41 4.09
3808 4265 4.253685 TGTTTTAGGATACAGTGAGCTGC 58.746 43.478 0.00 0.00 46.30 5.25
3820 4277 1.745653 GTGAGCTGCCAATTTAGGACC 59.254 52.381 0.00 0.00 0.00 4.46
3860 4317 7.504238 ACCCAGACAACTTATTTTTGTGATACA 59.496 33.333 0.00 0.00 37.31 2.29
3861 4318 8.522830 CCCAGACAACTTATTTTTGTGATACAT 58.477 33.333 0.00 0.00 37.31 2.29
3874 4331 9.899661 TTTTTGTGATACATATACTTAGTGGCT 57.100 29.630 0.00 0.00 0.00 4.75
3875 4332 8.887036 TTTGTGATACATATACTTAGTGGCTG 57.113 34.615 0.00 0.00 0.00 4.85
3876 4333 7.597288 TGTGATACATATACTTAGTGGCTGT 57.403 36.000 0.00 0.00 0.00 4.40
3877 4334 7.433680 TGTGATACATATACTTAGTGGCTGTG 58.566 38.462 0.00 0.00 0.00 3.66
3878 4335 7.286775 TGTGATACATATACTTAGTGGCTGTGA 59.713 37.037 0.00 0.00 0.00 3.58
3879 4336 7.595502 GTGATACATATACTTAGTGGCTGTGAC 59.404 40.741 0.00 0.00 0.00 3.67
3880 4337 7.505923 TGATACATATACTTAGTGGCTGTGACT 59.494 37.037 0.00 0.00 0.00 3.41
3881 4338 5.907207 ACATATACTTAGTGGCTGTGACTG 58.093 41.667 0.00 0.00 0.00 3.51
3882 4339 5.422331 ACATATACTTAGTGGCTGTGACTGT 59.578 40.000 0.00 0.00 0.00 3.55
3883 4340 4.891992 ATACTTAGTGGCTGTGACTGTT 57.108 40.909 0.00 0.00 0.00 3.16
3884 4341 2.838736 ACTTAGTGGCTGTGACTGTTG 58.161 47.619 0.00 0.00 0.00 3.33
3885 4342 2.170607 ACTTAGTGGCTGTGACTGTTGT 59.829 45.455 0.00 0.00 0.00 3.32
3886 4343 2.526304 TAGTGGCTGTGACTGTTGTC 57.474 50.000 0.00 0.00 43.20 3.18
3894 4351 4.703703 GACTGTTGTCAGGGAGCC 57.296 61.111 0.47 0.00 45.14 4.70
3895 4352 2.062070 GACTGTTGTCAGGGAGCCT 58.938 57.895 0.47 0.00 45.14 4.58
3896 4353 0.398318 GACTGTTGTCAGGGAGCCTT 59.602 55.000 0.47 0.00 45.14 4.35
3897 4354 0.846693 ACTGTTGTCAGGGAGCCTTT 59.153 50.000 0.47 0.00 45.14 3.11
3898 4355 1.242076 CTGTTGTCAGGGAGCCTTTG 58.758 55.000 0.00 0.00 37.97 2.77
3899 4356 0.550914 TGTTGTCAGGGAGCCTTTGT 59.449 50.000 0.00 0.00 0.00 2.83
3900 4357 1.239347 GTTGTCAGGGAGCCTTTGTC 58.761 55.000 0.00 0.00 0.00 3.18
3901 4358 0.110486 TTGTCAGGGAGCCTTTGTCC 59.890 55.000 0.00 0.00 0.00 4.02
3906 4363 4.745116 GGAGCCTTTGTCCCTTCC 57.255 61.111 0.00 0.00 0.00 3.46
3907 4364 1.000771 GGAGCCTTTGTCCCTTCCC 60.001 63.158 0.00 0.00 0.00 3.97
3908 4365 1.501654 GGAGCCTTTGTCCCTTCCCT 61.502 60.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.252967 TGTATGTTAGGTCTGCAAATTGTG 57.747 37.500 0.00 0.00 0.00 3.33
10 11 6.264292 TGTTGTATGTTAGGTCTGCAAATTGT 59.736 34.615 0.00 0.00 0.00 2.71
11 12 6.582295 GTGTTGTATGTTAGGTCTGCAAATTG 59.418 38.462 0.00 0.00 0.00 2.32
12 13 6.294508 GGTGTTGTATGTTAGGTCTGCAAATT 60.295 38.462 0.00 0.00 0.00 1.82
13 14 5.183140 GGTGTTGTATGTTAGGTCTGCAAAT 59.817 40.000 0.00 0.00 0.00 2.32
14 15 4.517453 GGTGTTGTATGTTAGGTCTGCAAA 59.483 41.667 0.00 0.00 0.00 3.68
15 16 4.069304 GGTGTTGTATGTTAGGTCTGCAA 58.931 43.478 0.00 0.00 0.00 4.08
16 17 3.071747 TGGTGTTGTATGTTAGGTCTGCA 59.928 43.478 0.00 0.00 0.00 4.41
17 18 3.670625 TGGTGTTGTATGTTAGGTCTGC 58.329 45.455 0.00 0.00 0.00 4.26
18 19 5.060506 TGTTGGTGTTGTATGTTAGGTCTG 58.939 41.667 0.00 0.00 0.00 3.51
19 20 5.298989 TGTTGGTGTTGTATGTTAGGTCT 57.701 39.130 0.00 0.00 0.00 3.85
20 21 6.378582 CATTGTTGGTGTTGTATGTTAGGTC 58.621 40.000 0.00 0.00 0.00 3.85
21 22 5.278758 GCATTGTTGGTGTTGTATGTTAGGT 60.279 40.000 0.00 0.00 0.00 3.08
22 23 5.160641 GCATTGTTGGTGTTGTATGTTAGG 58.839 41.667 0.00 0.00 0.00 2.69
23 24 5.160641 GGCATTGTTGGTGTTGTATGTTAG 58.839 41.667 0.00 0.00 0.00 2.34
24 25 4.584743 TGGCATTGTTGGTGTTGTATGTTA 59.415 37.500 0.00 0.00 0.00 2.41
25 26 3.386078 TGGCATTGTTGGTGTTGTATGTT 59.614 39.130 0.00 0.00 0.00 2.71
26 27 2.961741 TGGCATTGTTGGTGTTGTATGT 59.038 40.909 0.00 0.00 0.00 2.29
27 28 3.243670 TGTGGCATTGTTGGTGTTGTATG 60.244 43.478 0.00 0.00 0.00 2.39
28 29 2.961741 TGTGGCATTGTTGGTGTTGTAT 59.038 40.909 0.00 0.00 0.00 2.29
29 30 2.379005 TGTGGCATTGTTGGTGTTGTA 58.621 42.857 0.00 0.00 0.00 2.41
30 31 1.189752 TGTGGCATTGTTGGTGTTGT 58.810 45.000 0.00 0.00 0.00 3.32
31 32 2.306341 TTGTGGCATTGTTGGTGTTG 57.694 45.000 0.00 0.00 0.00 3.33
32 33 2.699846 AGATTGTGGCATTGTTGGTGTT 59.300 40.909 0.00 0.00 0.00 3.32
33 34 2.036217 CAGATTGTGGCATTGTTGGTGT 59.964 45.455 0.00 0.00 0.00 4.16
34 35 2.610976 CCAGATTGTGGCATTGTTGGTG 60.611 50.000 0.00 0.00 40.39 4.17
35 36 1.619827 CCAGATTGTGGCATTGTTGGT 59.380 47.619 0.00 0.00 40.39 3.67
36 37 2.373540 CCAGATTGTGGCATTGTTGG 57.626 50.000 0.00 0.00 40.39 3.77
46 47 1.747355 GCCCACATCTTCCAGATTGTG 59.253 52.381 0.00 0.00 35.48 3.33
47 48 1.341383 GGCCCACATCTTCCAGATTGT 60.341 52.381 0.00 0.00 31.32 2.71
48 49 1.396653 GGCCCACATCTTCCAGATTG 58.603 55.000 0.00 0.00 31.32 2.67
49 50 0.259938 GGGCCCACATCTTCCAGATT 59.740 55.000 19.95 0.00 31.32 2.40
50 51 1.649271 GGGGCCCACATCTTCCAGAT 61.649 60.000 26.86 0.00 34.74 2.90
51 52 2.308722 GGGGCCCACATCTTCCAGA 61.309 63.158 26.86 0.00 0.00 3.86
52 53 1.867595 AAGGGGCCCACATCTTCCAG 61.868 60.000 27.72 0.00 0.00 3.86
53 54 1.856873 AAGGGGCCCACATCTTCCA 60.857 57.895 27.72 0.00 0.00 3.53
54 55 1.076705 GAAGGGGCCCACATCTTCC 60.077 63.158 27.72 2.59 31.99 3.46
55 56 1.452108 CGAAGGGGCCCACATCTTC 60.452 63.158 27.72 24.01 34.09 2.87
56 57 1.497309 TTCGAAGGGGCCCACATCTT 61.497 55.000 27.72 17.86 0.00 2.40
57 58 1.915078 CTTCGAAGGGGCCCACATCT 61.915 60.000 27.72 8.57 0.00 2.90
58 59 1.452108 CTTCGAAGGGGCCCACATC 60.452 63.158 27.72 18.43 0.00 3.06
59 60 2.231380 ACTTCGAAGGGGCCCACAT 61.231 57.895 27.72 10.74 0.00 3.21
60 61 2.852075 ACTTCGAAGGGGCCCACA 60.852 61.111 27.72 1.30 0.00 4.17
61 62 2.359975 CACTTCGAAGGGGCCCAC 60.360 66.667 27.72 17.35 0.00 4.61
62 63 4.344865 GCACTTCGAAGGGGCCCA 62.345 66.667 27.89 0.00 0.00 5.36
63 64 3.860930 TTGCACTTCGAAGGGGCCC 62.861 63.158 27.89 17.12 31.86 5.80
64 65 1.250840 ATTTGCACTTCGAAGGGGCC 61.251 55.000 27.89 13.33 31.86 5.80
65 66 0.603065 AATTTGCACTTCGAAGGGGC 59.397 50.000 27.89 27.55 0.00 5.80
66 67 2.162681 AGAATTTGCACTTCGAAGGGG 58.837 47.619 27.89 19.87 0.00 4.79
67 68 3.923017 AAGAATTTGCACTTCGAAGGG 57.077 42.857 27.86 25.73 0.00 3.95
80 81 3.897505 AGCACTAACCAGGCAAAGAATTT 59.102 39.130 0.00 0.00 40.26 1.82
81 82 3.256631 CAGCACTAACCAGGCAAAGAATT 59.743 43.478 0.00 0.00 0.00 2.17
82 83 2.821969 CAGCACTAACCAGGCAAAGAAT 59.178 45.455 0.00 0.00 0.00 2.40
83 84 2.229792 CAGCACTAACCAGGCAAAGAA 58.770 47.619 0.00 0.00 0.00 2.52
84 85 1.896220 CAGCACTAACCAGGCAAAGA 58.104 50.000 0.00 0.00 0.00 2.52
85 86 0.242017 GCAGCACTAACCAGGCAAAG 59.758 55.000 0.00 0.00 0.00 2.77
86 87 0.467106 TGCAGCACTAACCAGGCAAA 60.467 50.000 0.00 0.00 0.00 3.68
87 88 0.467106 TTGCAGCACTAACCAGGCAA 60.467 50.000 0.00 0.00 38.75 4.52
88 89 0.467106 TTTGCAGCACTAACCAGGCA 60.467 50.000 0.00 0.00 0.00 4.75
89 90 0.673437 TTTTGCAGCACTAACCAGGC 59.327 50.000 0.00 0.00 0.00 4.85
90 91 1.000274 GGTTTTGCAGCACTAACCAGG 60.000 52.381 24.45 0.00 39.80 4.45
91 92 1.334960 CGGTTTTGCAGCACTAACCAG 60.335 52.381 26.85 19.24 39.98 4.00
92 93 0.665835 CGGTTTTGCAGCACTAACCA 59.334 50.000 26.85 0.00 39.98 3.67
93 94 0.666374 ACGGTTTTGCAGCACTAACC 59.334 50.000 21.41 21.41 37.31 2.85
94 95 1.064952 ACACGGTTTTGCAGCACTAAC 59.935 47.619 0.00 2.57 0.00 2.34
95 96 1.384525 ACACGGTTTTGCAGCACTAA 58.615 45.000 0.00 0.00 0.00 2.24
96 97 1.384525 AACACGGTTTTGCAGCACTA 58.615 45.000 0.00 0.00 0.00 2.74
97 98 0.530288 AAACACGGTTTTGCAGCACT 59.470 45.000 0.00 0.00 0.00 4.40
98 99 0.644843 CAAACACGGTTTTGCAGCAC 59.355 50.000 0.00 0.00 30.00 4.40
99 100 0.459237 CCAAACACGGTTTTGCAGCA 60.459 50.000 0.00 0.00 35.48 4.41
100 101 0.179124 TCCAAACACGGTTTTGCAGC 60.179 50.000 5.67 0.00 35.48 5.25
101 102 1.135257 TGTCCAAACACGGTTTTGCAG 60.135 47.619 5.67 0.00 35.48 4.41
102 103 0.888619 TGTCCAAACACGGTTTTGCA 59.111 45.000 5.67 0.00 35.48 4.08
103 104 1.135228 ACTGTCCAAACACGGTTTTGC 60.135 47.619 5.67 0.00 35.48 3.68
104 105 2.920490 CAACTGTCCAAACACGGTTTTG 59.080 45.455 4.46 4.46 42.20 2.44
105 106 2.672760 GCAACTGTCCAAACACGGTTTT 60.673 45.455 0.00 0.00 42.20 2.43
106 107 1.135228 GCAACTGTCCAAACACGGTTT 60.135 47.619 0.00 0.00 42.20 3.27
107 108 0.454196 GCAACTGTCCAAACACGGTT 59.546 50.000 0.00 0.00 45.13 4.44
108 109 1.711060 CGCAACTGTCCAAACACGGT 61.711 55.000 0.00 0.00 37.49 4.83
109 110 1.010125 CGCAACTGTCCAAACACGG 60.010 57.895 0.00 0.00 0.00 4.94
110 111 0.588730 CACGCAACTGTCCAAACACG 60.589 55.000 0.00 0.00 0.00 4.49
111 112 0.248458 CCACGCAACTGTCCAAACAC 60.248 55.000 0.00 0.00 0.00 3.32
112 113 0.393132 TCCACGCAACTGTCCAAACA 60.393 50.000 0.00 0.00 0.00 2.83
113 114 0.028902 GTCCACGCAACTGTCCAAAC 59.971 55.000 0.00 0.00 0.00 2.93
114 115 1.433053 CGTCCACGCAACTGTCCAAA 61.433 55.000 0.00 0.00 0.00 3.28
115 116 1.885388 CGTCCACGCAACTGTCCAA 60.885 57.895 0.00 0.00 0.00 3.53
116 117 2.279851 CGTCCACGCAACTGTCCA 60.280 61.111 0.00 0.00 0.00 4.02
117 118 3.041940 CCGTCCACGCAACTGTCC 61.042 66.667 0.00 0.00 38.18 4.02
118 119 2.424705 TACCCGTCCACGCAACTGTC 62.425 60.000 0.00 0.00 38.18 3.51
119 120 2.430382 CTACCCGTCCACGCAACTGT 62.430 60.000 0.00 0.00 38.18 3.55
120 121 1.736645 CTACCCGTCCACGCAACTG 60.737 63.158 0.00 0.00 38.18 3.16
121 122 2.654877 CTACCCGTCCACGCAACT 59.345 61.111 0.00 0.00 38.18 3.16
122 123 3.116531 GCTACCCGTCCACGCAAC 61.117 66.667 0.00 0.00 38.18 4.17
123 124 3.166490 TTGCTACCCGTCCACGCAA 62.166 57.895 0.00 0.00 38.16 4.85
124 125 3.583276 CTTGCTACCCGTCCACGCA 62.583 63.158 0.00 0.00 38.18 5.24
125 126 2.813908 CTTGCTACCCGTCCACGC 60.814 66.667 0.00 0.00 38.18 5.34
132 133 1.153168 CCATCACCCTTGCTACCCG 60.153 63.158 0.00 0.00 0.00 5.28
160 162 0.179073 CTCCACTTCCCGCATTCGAT 60.179 55.000 0.00 0.00 38.10 3.59
204 207 5.046304 TCAAATTGACCAAGTCCACCAAAAA 60.046 36.000 0.00 0.00 0.00 1.94
212 215 6.590234 AATACCTTCAAATTGACCAAGTCC 57.410 37.500 0.00 0.00 0.00 3.85
219 222 4.621034 CACGCCAAATACCTTCAAATTGAC 59.379 41.667 0.00 0.00 0.00 3.18
232 235 2.294791 CAGAACAAACCCACGCCAAATA 59.705 45.455 0.00 0.00 0.00 1.40
240 243 2.814336 GGATCTGACAGAACAAACCCAC 59.186 50.000 9.70 0.00 0.00 4.61
243 246 3.882888 TGTTGGATCTGACAGAACAAACC 59.117 43.478 23.17 15.43 30.60 3.27
246 249 4.756642 GTCATGTTGGATCTGACAGAACAA 59.243 41.667 17.23 17.23 39.24 2.83
247 250 4.202346 TGTCATGTTGGATCTGACAGAACA 60.202 41.667 9.70 9.60 43.10 3.18
256 259 4.776837 AGAAGAGTCTGTCATGTTGGATCT 59.223 41.667 0.00 0.00 30.83 2.75
270 273 0.178921 TGGCTCACCCAGAAGAGTCT 60.179 55.000 0.00 0.00 39.18 3.24
271 274 0.687354 TTGGCTCACCCAGAAGAGTC 59.313 55.000 0.00 0.00 46.39 3.36
274 277 2.069776 CCTTGGCTCACCCAGAAGA 58.930 57.895 0.00 0.00 46.39 2.87
278 281 3.655211 AGGCCTTGGCTCACCCAG 61.655 66.667 11.71 0.00 46.39 4.45
303 306 2.809665 GCTCAACTCATATCAGGGGCAG 60.810 54.545 0.00 0.00 0.00 4.85
323 326 1.759459 CTATCCGGAACCCCTGGAGC 61.759 65.000 9.01 0.00 38.11 4.70
326 329 2.829592 GCTATCCGGAACCCCTGG 59.170 66.667 9.01 0.00 0.00 4.45
327 330 2.421739 CGCTATCCGGAACCCCTG 59.578 66.667 9.01 0.00 0.00 4.45
334 337 0.386476 ATACGTTTGCGCTATCCGGA 59.614 50.000 6.61 6.61 42.83 5.14
344 347 6.027749 CCTCAAAACAATCCTATACGTTTGC 58.972 40.000 0.00 0.00 32.19 3.68
345 348 7.372451 TCCTCAAAACAATCCTATACGTTTG 57.628 36.000 0.00 0.00 32.19 2.93
346 349 6.598064 CCTCCTCAAAACAATCCTATACGTTT 59.402 38.462 0.00 0.00 33.15 3.60
357 360 0.611896 CCCGGCCTCCTCAAAACAAT 60.612 55.000 0.00 0.00 0.00 2.71
369 372 2.365635 AGCATCTACACCCGGCCT 60.366 61.111 0.00 0.00 0.00 5.19
397 400 2.491693 GCCCGGAGTTGAATGAAAATCA 59.508 45.455 0.73 0.00 0.00 2.57
399 402 2.493278 CAGCCCGGAGTTGAATGAAAAT 59.507 45.455 0.73 0.00 0.00 1.82
414 418 0.179174 GCCAAACGATTTACAGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
417 421 2.715737 TTGGCCAAACGATTTACAGC 57.284 45.000 17.98 0.00 0.00 4.40
418 422 6.347321 GGAAAAATTGGCCAAACGATTTACAG 60.347 38.462 24.71 0.00 34.23 2.74
444 448 4.217550 TGGCTATCCTTTTTCCGACAAAAG 59.782 41.667 10.50 10.50 41.59 2.27
448 452 3.426787 TTGGCTATCCTTTTTCCGACA 57.573 42.857 0.00 0.00 0.00 4.35
451 455 4.877282 TGTTTTTGGCTATCCTTTTTCCG 58.123 39.130 0.00 0.00 0.00 4.30
459 463 7.489574 TGATTTGTTTTGTTTTTGGCTATCC 57.510 32.000 0.00 0.00 0.00 2.59
487 491 6.240665 GTTTTGAGTAAACAAGCAAAAGTGC 58.759 36.000 0.00 0.00 46.50 4.40
495 499 2.711885 ACGCGTTTTGAGTAAACAAGC 58.288 42.857 5.58 0.00 45.20 4.01
506 513 0.248054 ACAGTGCTCAACGCGTTTTG 60.248 50.000 24.21 18.33 43.27 2.44
511 518 0.917259 GATCTACAGTGCTCAACGCG 59.083 55.000 3.53 3.53 43.27 6.01
520 527 6.872628 ATACCAATTGCATGATCTACAGTG 57.127 37.500 0.00 0.00 0.00 3.66
521 528 8.159447 ACATATACCAATTGCATGATCTACAGT 58.841 33.333 0.00 0.00 0.00 3.55
544 551 7.118825 GGCGGTAGTACTCTTCTTTTTAAACAT 59.881 37.037 0.00 0.00 0.00 2.71
546 553 6.400409 CGGCGGTAGTACTCTTCTTTTTAAAC 60.400 42.308 0.00 0.00 0.00 2.01
548 555 5.163513 CGGCGGTAGTACTCTTCTTTTTAA 58.836 41.667 0.00 0.00 0.00 1.52
549 556 4.380867 CCGGCGGTAGTACTCTTCTTTTTA 60.381 45.833 19.97 0.00 0.00 1.52
550 557 3.582780 CGGCGGTAGTACTCTTCTTTTT 58.417 45.455 0.00 0.00 0.00 1.94
556 563 0.813821 GAACCGGCGGTAGTACTCTT 59.186 55.000 34.37 14.52 33.12 2.85
558 565 0.527565 TTGAACCGGCGGTAGTACTC 59.472 55.000 34.37 25.22 33.12 2.59
560 567 1.794512 TTTTGAACCGGCGGTAGTAC 58.205 50.000 34.37 22.59 33.12 2.73
565 572 1.538075 CACTTATTTTGAACCGGCGGT 59.462 47.619 28.83 28.83 37.65 5.68
568 575 3.907894 TGACACTTATTTTGAACCGGC 57.092 42.857 0.00 0.00 0.00 6.13
583 590 5.466819 GGCCCTTGTTTAAAACTATGACAC 58.533 41.667 0.00 0.00 0.00 3.67
584 591 4.216687 CGGCCCTTGTTTAAAACTATGACA 59.783 41.667 0.00 0.00 0.00 3.58
588 595 3.760151 GACCGGCCCTTGTTTAAAACTAT 59.240 43.478 0.00 0.00 0.00 2.12
589 596 3.148412 GACCGGCCCTTGTTTAAAACTA 58.852 45.455 0.00 0.00 0.00 2.24
600 607 2.956333 GCATAATTTTAGACCGGCCCTT 59.044 45.455 0.00 0.00 0.00 3.95
601 608 2.583143 GCATAATTTTAGACCGGCCCT 58.417 47.619 0.00 0.78 0.00 5.19
602 609 1.265905 CGCATAATTTTAGACCGGCCC 59.734 52.381 0.00 0.00 0.00 5.80
610 617 5.393027 GCCCCATATGGTCGCATAATTTTAG 60.393 44.000 20.46 0.00 0.00 1.85
618 625 2.436109 GGCCCCATATGGTCGCAT 59.564 61.111 24.75 0.00 32.10 4.73
632 639 1.459730 ATTACTCCCTCCCTCGGCC 60.460 63.158 0.00 0.00 0.00 6.13
635 642 1.912417 ATCGATTACTCCCTCCCTCG 58.088 55.000 0.00 0.00 0.00 4.63
651 658 9.986833 TCATGACATTTTTCAAAGTGTATATCG 57.013 29.630 0.82 0.00 38.70 2.92
663 670 5.221028 GGTCTGTGTGTCATGACATTTTTCA 60.221 40.000 30.10 19.90 43.97 2.69
664 671 5.215160 GGTCTGTGTGTCATGACATTTTTC 58.785 41.667 30.10 17.60 43.97 2.29
698 708 1.028130 TCGGACAAATTGTTGCAGCA 58.972 45.000 0.00 0.00 38.39 4.41
699 709 1.001378 AGTCGGACAAATTGTTGCAGC 60.001 47.619 11.27 0.00 38.39 5.25
702 712 3.489416 GGAAAAGTCGGACAAATTGTTGC 59.511 43.478 11.27 0.00 38.39 4.17
703 713 4.932146 AGGAAAAGTCGGACAAATTGTTG 58.068 39.130 11.27 0.00 40.84 3.33
704 714 5.592104 AAGGAAAAGTCGGACAAATTGTT 57.408 34.783 11.27 0.00 0.00 2.83
705 715 5.592104 AAAGGAAAAGTCGGACAAATTGT 57.408 34.783 11.27 0.00 0.00 2.71
707 717 4.808895 GCAAAAGGAAAAGTCGGACAAATT 59.191 37.500 11.27 1.97 0.00 1.82
709 719 3.429684 GGCAAAAGGAAAAGTCGGACAAA 60.430 43.478 11.27 0.00 0.00 2.83
710 720 2.100087 GGCAAAAGGAAAAGTCGGACAA 59.900 45.455 11.27 0.00 0.00 3.18
711 721 1.679153 GGCAAAAGGAAAAGTCGGACA 59.321 47.619 11.27 0.00 0.00 4.02
712 722 1.679153 TGGCAAAAGGAAAAGTCGGAC 59.321 47.619 0.00 0.00 0.00 4.79
713 723 2.060050 TGGCAAAAGGAAAAGTCGGA 57.940 45.000 0.00 0.00 0.00 4.55
714 724 2.676076 CATGGCAAAAGGAAAAGTCGG 58.324 47.619 0.00 0.00 0.00 4.79
715 725 2.061028 GCATGGCAAAAGGAAAAGTCG 58.939 47.619 0.00 0.00 0.00 4.18
716 726 3.391506 AGCATGGCAAAAGGAAAAGTC 57.608 42.857 0.00 0.00 0.00 3.01
717 727 3.732212 GAAGCATGGCAAAAGGAAAAGT 58.268 40.909 0.00 0.00 0.00 2.66
718 728 2.733026 CGAAGCATGGCAAAAGGAAAAG 59.267 45.455 0.00 0.00 0.00 2.27
719 729 2.363680 TCGAAGCATGGCAAAAGGAAAA 59.636 40.909 0.00 0.00 0.00 2.29
722 732 1.838112 ATCGAAGCATGGCAAAAGGA 58.162 45.000 0.00 0.00 0.00 3.36
724 734 5.878261 GAAATATCGAAGCATGGCAAAAG 57.122 39.130 0.00 0.00 0.00 2.27
745 755 6.589523 TCGATTTCGTTTTATAGGTTTTCCGA 59.410 34.615 0.00 0.00 41.97 4.55
746 756 6.764094 TCGATTTCGTTTTATAGGTTTTCCG 58.236 36.000 0.00 0.00 41.97 4.30
748 758 8.843733 GGTTTCGATTTCGTTTTATAGGTTTTC 58.156 33.333 0.00 0.00 40.80 2.29
749 759 7.809331 GGGTTTCGATTTCGTTTTATAGGTTTT 59.191 33.333 0.00 0.00 40.80 2.43
752 762 5.939296 TGGGTTTCGATTTCGTTTTATAGGT 59.061 36.000 0.00 0.00 40.80 3.08
753 763 6.425577 TGGGTTTCGATTTCGTTTTATAGG 57.574 37.500 0.00 0.00 40.80 2.57
754 764 8.632551 GTTTTGGGTTTCGATTTCGTTTTATAG 58.367 33.333 0.00 0.00 40.80 1.31
755 765 7.594386 GGTTTTGGGTTTCGATTTCGTTTTATA 59.406 33.333 0.00 0.00 40.80 0.98
756 766 6.421501 GGTTTTGGGTTTCGATTTCGTTTTAT 59.578 34.615 0.00 0.00 40.80 1.40
757 767 5.747675 GGTTTTGGGTTTCGATTTCGTTTTA 59.252 36.000 0.00 0.00 40.80 1.52
758 768 4.567558 GGTTTTGGGTTTCGATTTCGTTTT 59.432 37.500 0.00 0.00 40.80 2.43
1400 1465 2.018515 AGGAGAAGGAACGACGAGATC 58.981 52.381 0.00 0.00 0.00 2.75
1590 1666 1.942776 TGCAGATCCTGGAGAACTCA 58.057 50.000 1.52 0.00 31.21 3.41
1645 1721 9.220767 AGAACAAAAATTACAGTAGATGGAGAC 57.779 33.333 0.00 0.00 0.00 3.36
1681 1762 2.300152 ACAAGCGAGGAACAGAGATGAA 59.700 45.455 0.00 0.00 0.00 2.57
1693 1774 2.811317 GCCGTCAGACAAGCGAGG 60.811 66.667 0.41 0.00 0.00 4.63
1756 1873 1.202698 GCAGTGGAGAACTTGACACCT 60.203 52.381 0.00 0.00 36.83 4.00
1804 1921 1.270518 ACAGTAGTGTTCTGCCTGCAG 60.271 52.381 12.91 12.91 44.86 4.41
1844 1961 3.759815 ACTACTAAGCAGGGGAGAAGA 57.240 47.619 0.00 0.00 0.00 2.87
1865 1982 3.985127 TGCCTGGAGGAAATTGATTCAT 58.015 40.909 0.00 0.00 39.98 2.57
2020 2198 4.023193 GGGCCAATCTACCATGAATAAACG 60.023 45.833 4.39 0.00 0.00 3.60
2080 2258 7.279536 GGTTCTGTAAACAAATACTAGTAGGGC 59.720 40.741 8.85 0.00 0.00 5.19
2140 2328 4.057432 GCAGCTTAACATTTGGAAGCAAA 58.943 39.130 16.79 0.00 46.46 3.68
2208 2499 3.594603 ACGAGTACAGGGTTCATCAAG 57.405 47.619 0.00 0.00 0.00 3.02
2224 2518 1.728971 CCAGCTCAAAGCACTAACGAG 59.271 52.381 1.29 0.00 45.56 4.18
2227 2521 2.494059 TCACCAGCTCAAAGCACTAAC 58.506 47.619 1.29 0.00 45.56 2.34
2233 2527 3.027419 AGGTTCACCAGCTCAAAGC 57.973 52.632 0.00 0.00 42.84 3.51
2299 2593 3.638627 TGACCATCTCAACAGCGATATCT 59.361 43.478 0.34 0.00 0.00 1.98
2308 2602 2.224281 GGTGTCACTGACCATCTCAACA 60.224 50.000 6.72 0.00 33.25 3.33
2328 2624 9.877178 ACTATAAATCTACTTTCTGTTCACTGG 57.123 33.333 0.00 0.00 0.00 4.00
2353 2649 2.740055 CACAGGCCTCGTGCTGAC 60.740 66.667 18.37 0.00 40.92 3.51
2376 2672 6.709397 AGTGTGAAATATATGTGAGCTGGATG 59.291 38.462 0.00 0.00 0.00 3.51
2425 2723 4.643334 GGTACCCCAATATGAAAACCAGTC 59.357 45.833 0.00 0.00 0.00 3.51
2479 2779 3.057033 GGCTGCATCAGACAAAACAATCT 60.057 43.478 0.50 0.00 39.71 2.40
2517 2818 1.069823 ACCGGCTCTTGCATCTCTATG 59.930 52.381 0.00 0.00 41.91 2.23
2762 3063 3.000423 ACGCAAACGGCAATTTAAACAAC 60.000 39.130 0.00 0.00 46.04 3.32
2764 3065 2.810650 ACGCAAACGGCAATTTAAACA 58.189 38.095 0.00 0.00 46.04 2.83
2772 3073 2.548904 ACAATAGTTACGCAAACGGCAA 59.451 40.909 0.00 0.00 46.04 4.52
2796 3097 7.092716 ACAAGCATAACATCCTTTTTGCTTAG 58.907 34.615 11.51 9.43 45.69 2.18
2879 3180 3.928992 CAGCACTGGTGTAACATAGACAG 59.071 47.826 0.00 0.00 39.98 3.51
2884 3185 4.252878 CATGACAGCACTGGTGTAACATA 58.747 43.478 13.78 0.11 44.55 2.29
2927 3228 1.926511 GCGCCACAAATCCCAGACAG 61.927 60.000 0.00 0.00 0.00 3.51
2932 3233 1.112315 AAACAGCGCCACAAATCCCA 61.112 50.000 2.29 0.00 0.00 4.37
2950 3251 6.894654 TGGAAATTATGGCTTCTTGTATCCAA 59.105 34.615 0.00 0.00 31.66 3.53
2955 3256 5.357878 CAGCTGGAAATTATGGCTTCTTGTA 59.642 40.000 5.57 0.00 0.00 2.41
2963 3264 2.167075 ACAAGCAGCTGGAAATTATGGC 59.833 45.455 17.12 0.00 0.00 4.40
2974 3275 3.750130 AGAACAATCAGTACAAGCAGCTG 59.250 43.478 10.11 10.11 0.00 4.24
2992 3293 3.569701 TGGATTGCCACTTCTGAAAGAAC 59.430 43.478 0.00 0.00 43.77 3.01
2994 3295 3.507162 TGGATTGCCACTTCTGAAAGA 57.493 42.857 0.00 0.00 39.83 2.52
3018 3320 6.312399 TGGCACACTAACAAAACTGATAAG 57.688 37.500 0.00 0.00 0.00 1.73
3029 3331 2.884012 CCACTGAATTGGCACACTAACA 59.116 45.455 0.00 0.00 39.29 2.41
3039 3341 0.899720 ATGGCTTGCCACTGAATTGG 59.100 50.000 17.22 0.00 39.98 3.16
3040 3342 3.872511 TTATGGCTTGCCACTGAATTG 57.127 42.857 17.22 0.00 0.00 2.32
3041 3343 5.422145 GAAATTATGGCTTGCCACTGAATT 58.578 37.500 17.22 17.60 0.00 2.17
3042 3344 4.141869 GGAAATTATGGCTTGCCACTGAAT 60.142 41.667 17.22 13.17 0.00 2.57
3043 3345 3.195396 GGAAATTATGGCTTGCCACTGAA 59.805 43.478 17.22 11.52 0.00 3.02
3044 3346 2.760092 GGAAATTATGGCTTGCCACTGA 59.240 45.455 17.22 6.21 0.00 3.41
3050 3352 2.817901 CAGCTGGAAATTATGGCTTGC 58.182 47.619 5.57 0.00 0.00 4.01
3053 3355 2.429610 CAAGCAGCTGGAAATTATGGCT 59.570 45.455 17.12 0.00 0.00 4.75
3054 3356 2.428171 TCAAGCAGCTGGAAATTATGGC 59.572 45.455 17.12 0.00 0.00 4.40
3055 3357 4.159135 AGTTCAAGCAGCTGGAAATTATGG 59.841 41.667 14.26 0.00 0.00 2.74
3056 3358 5.100259 CAGTTCAAGCAGCTGGAAATTATG 58.900 41.667 14.26 7.25 0.00 1.90
3058 3360 4.397420 TCAGTTCAAGCAGCTGGAAATTA 58.603 39.130 14.26 1.48 0.00 1.40
3059 3361 3.225104 TCAGTTCAAGCAGCTGGAAATT 58.775 40.909 14.26 2.99 0.00 1.82
3060 3362 2.867624 TCAGTTCAAGCAGCTGGAAAT 58.132 42.857 14.26 10.45 0.00 2.17
3061 3363 2.346766 TCAGTTCAAGCAGCTGGAAA 57.653 45.000 14.26 0.00 0.00 3.13
3064 3366 1.884579 ACAATCAGTTCAAGCAGCTGG 59.115 47.619 17.12 0.00 0.00 4.85
3065 3367 3.637998 AACAATCAGTTCAAGCAGCTG 57.362 42.857 10.11 10.11 34.74 4.24
3094 3396 8.757495 GGACTAACCATGGCATATATGCGAAAT 61.757 40.741 27.07 18.66 44.49 2.17
3095 3397 7.516027 GGACTAACCATGGCATATATGCGAAA 61.516 42.308 27.07 17.41 44.49 3.46
3141 3443 1.201414 CCCCGTAAACTGAATTGGCAC 59.799 52.381 0.00 0.00 0.00 5.01
3171 3473 4.625742 TGCTATTTTCAGACTGCGTAGTTC 59.374 41.667 7.83 1.33 37.25 3.01
3184 3486 9.624697 GTTGATGAAAGTATTGTGCTATTTTCA 57.375 29.630 4.57 4.57 39.84 2.69
3256 3558 5.656859 TGGTGATCACTAGTACAAGTAGCAT 59.343 40.000 24.50 0.00 0.00 3.79
3324 3729 0.685458 AGATCTGCCCATTGGGTTGC 60.685 55.000 22.82 9.38 46.51 4.17
3358 3763 6.090088 TGTTATGTTTTAATTTGCGGATGTGC 59.910 34.615 0.00 0.00 0.00 4.57
3430 3835 3.334583 TGGCGAGAGTAGCAATTTCTT 57.665 42.857 0.00 0.00 36.08 2.52
3432 3837 3.001736 GTCATGGCGAGAGTAGCAATTTC 59.998 47.826 0.00 0.00 36.08 2.17
3456 3861 1.153168 CTAAGGGCATGGGTCACCG 60.153 63.158 0.00 0.00 40.75 4.94
3474 3879 5.048782 TGTTGTTCCTGTGAATATGAAGTGC 60.049 40.000 0.00 0.00 31.98 4.40
3512 3917 3.733337 AGTTAGTCAGACTGCACTTTGG 58.267 45.455 13.84 0.00 0.00 3.28
3558 3964 8.654230 TCATGACTGCATCTTCTAAGAATTAC 57.346 34.615 0.00 0.00 38.77 1.89
3589 3995 7.381139 GCAGATCTGTTTTCGGTTTTTATTTCA 59.619 33.333 23.38 0.00 0.00 2.69
3590 3996 7.595130 AGCAGATCTGTTTTCGGTTTTTATTTC 59.405 33.333 23.38 0.79 0.00 2.17
3601 4007 4.259970 CCGTATTGAGCAGATCTGTTTTCG 60.260 45.833 23.38 16.88 0.00 3.46
3605 4011 2.093500 TGCCGTATTGAGCAGATCTGTT 60.093 45.455 23.38 18.35 33.08 3.16
3606 4012 1.482182 TGCCGTATTGAGCAGATCTGT 59.518 47.619 23.38 10.70 33.08 3.41
3608 4014 2.289320 GGATGCCGTATTGAGCAGATCT 60.289 50.000 0.00 0.00 43.38 2.75
3612 4018 1.202568 TCAGGATGCCGTATTGAGCAG 60.203 52.381 0.00 0.00 43.38 4.24
3621 4027 2.046314 CCGGTTTCAGGATGCCGT 60.046 61.111 0.00 0.00 42.36 5.68
3622 4028 2.046314 ACCGGTTTCAGGATGCCG 60.046 61.111 0.00 0.00 43.40 5.69
3627 4033 0.841289 AAACTGGACCGGTTTCAGGA 59.159 50.000 29.80 6.07 38.39 3.86
3632 4038 2.041251 TTTCGAAACTGGACCGGTTT 57.959 45.000 27.97 27.97 44.39 3.27
3639 4045 3.499157 CCCGTAACAATTTCGAAACTGGA 59.501 43.478 21.89 8.02 0.00 3.86
3643 4049 2.030981 TGCCCCGTAACAATTTCGAAAC 60.031 45.455 13.81 0.00 0.00 2.78
3644 4050 2.228059 TGCCCCGTAACAATTTCGAAA 58.772 42.857 13.91 13.91 0.00 3.46
3652 4058 0.945813 CTCGTTTTGCCCCGTAACAA 59.054 50.000 0.00 0.00 0.00 2.83
3657 4063 1.668101 TTTTGCTCGTTTTGCCCCGT 61.668 50.000 0.00 0.00 0.00 5.28
3658 4064 1.066587 TTTTGCTCGTTTTGCCCCG 59.933 52.632 0.00 0.00 0.00 5.73
3679 4090 1.204146 GCATTCTCTACCCCACCTCA 58.796 55.000 0.00 0.00 0.00 3.86
3680 4091 1.134371 GTGCATTCTCTACCCCACCTC 60.134 57.143 0.00 0.00 0.00 3.85
3684 4095 1.951209 TCTGTGCATTCTCTACCCCA 58.049 50.000 0.00 0.00 0.00 4.96
3709 4120 5.684704 TGCCTACCCTATCTGATTTTTGAG 58.315 41.667 0.00 0.00 0.00 3.02
3710 4121 5.708736 TGCCTACCCTATCTGATTTTTGA 57.291 39.130 0.00 0.00 0.00 2.69
3727 4140 1.060729 TTGCCTACTGGTGTTGCCTA 58.939 50.000 0.00 0.00 38.35 3.93
3776 4232 6.098982 ACTGTATCCTAAAACATCCTCCTCTG 59.901 42.308 0.00 0.00 0.00 3.35
3806 4263 3.010027 TGATCTGTGGTCCTAAATTGGCA 59.990 43.478 0.00 0.00 0.00 4.92
3808 4265 4.641989 CCTTGATCTGTGGTCCTAAATTGG 59.358 45.833 0.00 0.00 0.00 3.16
3820 4277 3.077359 GTCTGGGTTTCCTTGATCTGTG 58.923 50.000 0.00 0.00 0.00 3.66
3860 4317 6.070767 ACAACAGTCACAGCCACTAAGTATAT 60.071 38.462 0.00 0.00 0.00 0.86
3861 4318 5.245301 ACAACAGTCACAGCCACTAAGTATA 59.755 40.000 0.00 0.00 0.00 1.47
3862 4319 4.040461 ACAACAGTCACAGCCACTAAGTAT 59.960 41.667 0.00 0.00 0.00 2.12
3863 4320 3.386726 ACAACAGTCACAGCCACTAAGTA 59.613 43.478 0.00 0.00 0.00 2.24
3864 4321 2.170607 ACAACAGTCACAGCCACTAAGT 59.829 45.455 0.00 0.00 0.00 2.24
3865 4322 2.802816 GACAACAGTCACAGCCACTAAG 59.197 50.000 0.00 0.00 32.50 2.18
3866 4323 2.169561 TGACAACAGTCACAGCCACTAA 59.830 45.455 0.00 0.00 37.36 2.24
3867 4324 1.760029 TGACAACAGTCACAGCCACTA 59.240 47.619 0.00 0.00 37.36 2.74
3868 4325 0.541392 TGACAACAGTCACAGCCACT 59.459 50.000 0.00 0.00 37.36 4.00
3869 4326 0.940126 CTGACAACAGTCACAGCCAC 59.060 55.000 0.00 0.00 37.36 5.01
3870 4327 0.179048 CCTGACAACAGTCACAGCCA 60.179 55.000 0.00 0.00 42.05 4.75
3871 4328 0.886490 CCCTGACAACAGTCACAGCC 60.886 60.000 0.00 0.00 42.05 4.85
3872 4329 0.106708 TCCCTGACAACAGTCACAGC 59.893 55.000 0.00 0.00 42.05 4.40
3873 4330 1.875576 GCTCCCTGACAACAGTCACAG 60.876 57.143 0.00 0.00 42.05 3.66
3874 4331 0.106708 GCTCCCTGACAACAGTCACA 59.893 55.000 0.00 0.00 42.05 3.58
3875 4332 0.603975 GGCTCCCTGACAACAGTCAC 60.604 60.000 0.00 0.00 42.05 3.67
3876 4333 0.764369 AGGCTCCCTGACAACAGTCA 60.764 55.000 0.00 0.00 42.05 3.41
3877 4334 0.398318 AAGGCTCCCTGACAACAGTC 59.602 55.000 0.00 0.00 42.05 3.51
3878 4335 0.846693 AAAGGCTCCCTGACAACAGT 59.153 50.000 0.00 0.00 42.05 3.55
3879 4336 1.242076 CAAAGGCTCCCTGACAACAG 58.758 55.000 0.00 0.00 43.12 3.16
3880 4337 0.550914 ACAAAGGCTCCCTGACAACA 59.449 50.000 0.00 0.00 32.13 3.33
3881 4338 1.239347 GACAAAGGCTCCCTGACAAC 58.761 55.000 0.00 0.00 32.13 3.32
3882 4339 0.110486 GGACAAAGGCTCCCTGACAA 59.890 55.000 0.00 0.00 32.13 3.18
3883 4340 1.761174 GGACAAAGGCTCCCTGACA 59.239 57.895 0.00 0.00 32.13 3.58
3884 4341 1.002011 GGGACAAAGGCTCCCTGAC 60.002 63.158 2.37 0.00 43.93 3.51
3885 4342 3.495729 GGGACAAAGGCTCCCTGA 58.504 61.111 2.37 0.00 43.93 3.86
3889 4346 1.000771 GGGAAGGGACAAAGGCTCC 60.001 63.158 0.00 0.00 0.00 4.70
3890 4347 2.079326 AGGGAAGGGACAAAGGCTC 58.921 57.895 0.00 0.00 0.00 4.70
3891 4348 4.358102 AGGGAAGGGACAAAGGCT 57.642 55.556 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.