AutoCloner

Multiple sequence alignment - TraesCS6D01G357200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G357200	chr6D	100.000	2729	0	0	1	2729	450905516	450908244	0.000000e+00	5040
1	TraesCS6D01G357200	chr7D	91.754	2183	148	13	4	2165	463976275	463974104	0.000000e+00	3005
2	TraesCS6D01G357200	chr7D	90.777	2201	150	15	4	2160	107723236	107721045	0.000000e+00	2891
3	TraesCS6D01G357200	chr7D	85.098	510	55	10	1	494	188565177	188564673	4.060000e-138	501
4	TraesCS6D01G357200	chr4B	91.537	2186	153	15	1	2164	551729654	551731829	0.000000e+00	2983
5	TraesCS6D01G357200	chr4B	91.571	2183	152	15	4	2164	551784265	551786437	0.000000e+00	2983
6	TraesCS6D01G357200	chr7B	91.481	2195	136	16	4	2164	150841651	150843828	0.000000e+00	2970
7	TraesCS6D01G357200	chr7B	91.697	542	36	6	2194	2728	359411231	359411770	0.000000e+00	743
8	TraesCS6D01G357200	chr7B	91.667	540	35	4	2195	2727	449807076	449807612	0.000000e+00	739
9	TraesCS6D01G357200	chr7B	91.248	537	42	4	2195	2728	681915268	681914734	0.000000e+00	726
10	TraesCS6D01G357200	chr2B	91.045	2066	162	11	109	2167	459481348	459479299	0.000000e+00	2769
11	TraesCS6D01G357200	chr2B	89.438	2187	187	23	5	2168	713705181	713703016	0.000000e+00	2719
12	TraesCS6D01G357200	chr2B	87.618	1268	128	18	4	1260	737046831	737045582	0.000000e+00	1445
13	TraesCS6D01G357200	chr2B	92.683	533	36	3	2195	2727	184902310	184902839	0.000000e+00	765
14	TraesCS6D01G357200	chr2B	86.278	532	58	12	1	526	636461032	636460510	5.100000e-157	564
15	TraesCS6D01G357200	chr4D	89.991	2168	164	27	19	2175	116524956	116522831	0.000000e+00	2752
16	TraesCS6D01G357200	chr4A	89.791	2155	192	17	18	2164	327748787	327746653	0.000000e+00	2736
17	TraesCS6D01G357200	chr2D	88.481	1415	117	26	5	1413	314352725	314351351	0.000000e+00	1668
18	TraesCS6D01G357200	chr2D	91.481	540	37	3	2195	2727	629512885	629513422	0.000000e+00	734
19	TraesCS6D01G357200	chr1B	92.884	534	37	1	2195	2727	183751201	183751734	0.000000e+00	774
20	TraesCS6D01G357200	chr5B	92.537	536	34	4	2195	2725	455267629	455268163	0.000000e+00	763
21	TraesCS6D01G357200	chr5D	91.776	535	42	2	2195	2728	564253958	564254491	0.000000e+00	743
22	TraesCS6D01G357200	chr3B	91.107	551	39	4	2186	2728	591502496	591501948	0.000000e+00	737
23	TraesCS6D01G357200	chr3D	88.584	438	47	3	18	455	516071177	516070743	1.860000e-146	529

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G357200	chr6D	450905516	450908244	2728	False	5040	5040	100.000	1	2729	1	chr6D.!!$F1	2728
1	TraesCS6D01G357200	chr7D	463974104	463976275	2171	True	3005	3005	91.754	4	2165	1	chr7D.!!$R3	2161
2	TraesCS6D01G357200	chr7D	107721045	107723236	2191	True	2891	2891	90.777	4	2160	1	chr7D.!!$R1	2156
3	TraesCS6D01G357200	chr7D	188564673	188565177	504	True	501	501	85.098	1	494	1	chr7D.!!$R2	493
4	TraesCS6D01G357200	chr4B	551729654	551731829	2175	False	2983	2983	91.537	1	2164	1	chr4B.!!$F1	2163
5	TraesCS6D01G357200	chr4B	551784265	551786437	2172	False	2983	2983	91.571	4	2164	1	chr4B.!!$F2	2160
6	TraesCS6D01G357200	chr7B	150841651	150843828	2177	False	2970	2970	91.481	4	2164	1	chr7B.!!$F1	2160
7	TraesCS6D01G357200	chr7B	359411231	359411770	539	False	743	743	91.697	2194	2728	1	chr7B.!!$F2	534
8	TraesCS6D01G357200	chr7B	449807076	449807612	536	False	739	739	91.667	2195	2727	1	chr7B.!!$F3	532
9	TraesCS6D01G357200	chr7B	681914734	681915268	534	True	726	726	91.248	2195	2728	1	chr7B.!!$R1	533
10	TraesCS6D01G357200	chr2B	459479299	459481348	2049	True	2769	2769	91.045	109	2167	1	chr2B.!!$R1	2058
11	TraesCS6D01G357200	chr2B	713703016	713705181	2165	True	2719	2719	89.438	5	2168	1	chr2B.!!$R3	2163
12	TraesCS6D01G357200	chr2B	737045582	737046831	1249	True	1445	1445	87.618	4	1260	1	chr2B.!!$R4	1256
13	TraesCS6D01G357200	chr2B	184902310	184902839	529	False	765	765	92.683	2195	2727	1	chr2B.!!$F1	532
14	TraesCS6D01G357200	chr2B	636460510	636461032	522	True	564	564	86.278	1	526	1	chr2B.!!$R2	525
15	TraesCS6D01G357200	chr4D	116522831	116524956	2125	True	2752	2752	89.991	19	2175	1	chr4D.!!$R1	2156
16	TraesCS6D01G357200	chr4A	327746653	327748787	2134	True	2736	2736	89.791	18	2164	1	chr4A.!!$R1	2146
17	TraesCS6D01G357200	chr2D	314351351	314352725	1374	True	1668	1668	88.481	5	1413	1	chr2D.!!$R1	1408
18	TraesCS6D01G357200	chr2D	629512885	629513422	537	False	734	734	91.481	2195	2727	1	chr2D.!!$F1	532
19	TraesCS6D01G357200	chr1B	183751201	183751734	533	False	774	774	92.884	2195	2727	1	chr1B.!!$F1	532
20	TraesCS6D01G357200	chr5B	455267629	455268163	534	False	763	763	92.537	2195	2725	1	chr5B.!!$F1	530
21	TraesCS6D01G357200	chr5D	564253958	564254491	533	False	743	743	91.776	2195	2728	1	chr5D.!!$F1	533
22	TraesCS6D01G357200	chr3B	591501948	591502496	548	True	737	737	91.107	2186	2728	1	chr3B.!!$R1	542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
651	769	0.682209	TAGCCGTCTCCCAGTACACC	60.682	60.0	0.0	0.0	0.0	4.16	F
1263	1386	0.178981	CCCTTCATCCAATGCCCGAT	60.179	55.0	0.0	0.0	0.0	4.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1527	1657	0.035317	TGCCGTTCATCAGCTTCACT	59.965	50.0	0.00	0.0	0.0	3.41	R
2201	2354	0.378962	CTCGACTCGGCTCGAATTCT	59.621	55.0	3.52	0.0	42.0	2.40	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
77	91	1.801178	GCAGTTATTAGCCTCATCGCC	59.199	52.381	0.00	0.00	0.00	5.54
80	94	1.348036	GTTATTAGCCTCATCGCCCCT	59.652	52.381	0.00	0.00	0.00	4.79
81	95	1.267121	TATTAGCCTCATCGCCCCTC	58.733	55.000	0.00	0.00	0.00	4.30
82	96	0.764369	ATTAGCCTCATCGCCCCTCA	60.764	55.000	0.00	0.00	0.00	3.86
83	97	1.686325	TTAGCCTCATCGCCCCTCAC	61.686	60.000	0.00	0.00	0.00	3.51
84	98	4.554036	GCCTCATCGCCCCTCACC	62.554	72.222	0.00	0.00	0.00	4.02
85	99	4.227134	CCTCATCGCCCCTCACCG	62.227	72.222	0.00	0.00	0.00	4.94
86	100	4.899239	CTCATCGCCCCTCACCGC	62.899	72.222	0.00	0.00	0.00	5.68
88	102	4.899239	CATCGCCCCTCACCGCTC	62.899	72.222	0.00	0.00	0.00	5.03
106	140	1.534235	CCCTATCCCCACTCTCCCG	60.534	68.421	0.00	0.00	0.00	5.14
173	207	1.361632	CTCCATCATCAGCGAGCGA	59.638	57.895	0.00	0.00	0.00	4.93
233	267	1.914051	CTCTGTTCGTCATGCACTACG	59.086	52.381	14.74	14.74	40.40	3.51
306	340	5.473273	TGGGGAATAGAGGTAGATAAGCAA	58.527	41.667	0.00	0.00	0.00	3.91
356	444	5.371526	TCATGCAAGATTGGAATAGAGGTC	58.628	41.667	0.00	0.00	30.51	3.85
370	458	0.749649	GAGGTCGATGCAGATGGAGT	59.250	55.000	0.00	0.00	0.00	3.85
371	459	1.957177	GAGGTCGATGCAGATGGAGTA	59.043	52.381	0.00	0.00	0.00	2.59
372	460	1.959985	AGGTCGATGCAGATGGAGTAG	59.040	52.381	0.00	0.00	0.00	2.57
379	467	3.388552	TGCAGATGGAGTAGAAGGAGA	57.611	47.619	0.00	0.00	0.00	3.71
414	518	1.007336	GTACAGAACAGACACCGGCG	61.007	60.000	0.00	0.00	0.00	6.46
540	650	3.197614	TCGAGGTCGATCTGCCAC	58.802	61.111	0.91	0.00	44.22	5.01
607	723	1.019650	TTCCTCCTCCTTAGGCTCCT	58.980	55.000	0.00	0.00	43.31	3.69
621	739	2.362503	TCCTCACCGATGACCGCT	60.363	61.111	0.00	0.00	36.84	5.52
651	769	0.682209	TAGCCGTCTCCCAGTACACC	60.682	60.000	0.00	0.00	0.00	4.16
682	800	1.694696	GGTCATTAGGAGCCCAGTAGG	59.305	57.143	0.00	0.00	38.08	3.18
838	956	1.477014	CCCTCATGAGCACTGCATCAT	60.477	52.381	17.76	6.92	36.60	2.45
1014	1133	0.617535	TGGCGATGGAGAGGAGGAAA	60.618	55.000	0.00	0.00	0.00	3.13
1053	1172	0.912968	AGGGGGTGGGTAAGTAGTGC	60.913	60.000	0.00	0.00	0.00	4.40
1088	1207	3.678056	AAATATAGGCGCGATGGAGAA	57.322	42.857	12.10	0.00	0.00	2.87
1132	1255	5.671329	GCCGTTTTAACTACATGCTCTTCAG	60.671	44.000	0.00	0.00	0.00	3.02
1142	1265	3.276857	CATGCTCTTCAGTAAGCCATGT	58.723	45.455	0.00	0.00	37.38	3.21
1162	1285	1.070275	CTCTGTGCTGTGCCTGACA	59.930	57.895	0.00	0.00	0.00	3.58
1163	1286	0.321387	CTCTGTGCTGTGCCTGACAT	60.321	55.000	0.00	0.00	32.74	3.06
1263	1386	0.178981	CCCTTCATCCAATGCCCGAT	60.179	55.000	0.00	0.00	0.00	4.18
1296	1419	2.663196	CCCACCACCGAGGAAGAC	59.337	66.667	0.00	0.00	41.22	3.01
1317	1440	1.371558	GAAGACGCCTGAGGTTGGT	59.628	57.895	0.00	0.00	0.00	3.67
1377	1505	1.017701	GCAACTACGGCCACTACCAC	61.018	60.000	2.24	0.00	0.00	4.16
1435	1565	2.856032	CACCGAAGCTTGAGTGCG	59.144	61.111	2.10	0.00	38.13	5.34
1508	1638	2.104111	TCAATCTCAGGAACAACACCGT	59.896	45.455	0.00	0.00	0.00	4.83
1617	1747	0.753262	AGATCGGCTACATGGTGACC	59.247	55.000	0.00	0.00	0.00	4.02
1680	1810	0.036388	ACGACGATGGCATTGAGGTT	60.036	50.000	21.46	0.00	0.00	3.50
1826	1979	5.683876	AGTGTGGTACTGCTTATCTGAAT	57.316	39.130	0.00	0.00	38.49	2.57
1828	1981	6.109359	AGTGTGGTACTGCTTATCTGAATTC	58.891	40.000	0.00	0.00	38.49	2.17
1958	2111	0.955428	ACACACCAGGCGTTGCATAG	60.955	55.000	0.00	0.00	0.00	2.23
2008	2161	2.899256	ACTAACATGCAGGCAACCAAAT	59.101	40.909	0.00	0.00	37.17	2.32
2050	2203	4.437587	GCAGGCAGGAGGGCATGT	62.438	66.667	1.76	0.00	46.51	3.21
2148	2301	2.981898	TGCAGCTACTGTAGACTACGA	58.018	47.619	18.64	0.00	33.43	3.43
2171	2324	1.289109	CCAAACACGCCCGTAGTGAG	61.289	60.000	8.75	0.00	41.83	3.51
2173	2326	0.105408	AAACACGCCCGTAGTGAGTT	59.895	50.000	8.75	2.03	40.85	3.01
2174	2327	0.319297	AACACGCCCGTAGTGAGTTC	60.319	55.000	8.75	0.00	41.83	3.01
2175	2328	1.287815	CACGCCCGTAGTGAGTTCA	59.712	57.895	0.00	0.00	41.83	3.18
2176	2329	1.007336	CACGCCCGTAGTGAGTTCAC	61.007	60.000	4.09	4.09	46.77	3.18
2187	2340	2.222027	GTGAGTTCACCCTTGACTTGG	58.778	52.381	0.72	0.00	40.85	3.61
2188	2341	1.239347	GAGTTCACCCTTGACTTGGC	58.761	55.000	0.00	0.00	0.00	4.52
2189	2342	0.846693	AGTTCACCCTTGACTTGGCT	59.153	50.000	0.00	0.00	0.00	4.75
2190	2343	1.202818	AGTTCACCCTTGACTTGGCTC	60.203	52.381	0.00	0.00	0.00	4.70
2191	2344	0.110486	TTCACCCTTGACTTGGCTCC	59.890	55.000	0.00	0.00	0.00	4.70
2192	2345	0.768221	TCACCCTTGACTTGGCTCCT	60.768	55.000	0.00	0.00	0.00	3.69
2201	2354	2.179204	TGACTTGGCTCCTATAGGGCTA	59.821	50.000	23.38	18.21	35.41	3.93
2268	2421	5.120363	GCTAGTTTTGTTAACGAGCTAGCTT	59.880	40.000	30.28	5.57	43.60	3.74
2333	2486	3.074413	CTCGTATAACTCGCGAGCC	57.926	57.895	34.83	16.53	44.03	4.70
2647	2821	1.268352	AGCTCGGCTCGACTCATTATC	59.732	52.381	0.00	0.00	30.62	1.75
2648	2822	1.001268	GCTCGGCTCGACTCATTATCA	60.001	52.381	0.00	0.00	0.00	2.15

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
56	60	2.548920	GGCGATGAGGCTAATAACTGCT	60.549	50.000	0.00	0.00	42.90	4.24
77	91	2.210711	GGATAGGGAGCGGTGAGGG	61.211	68.421	0.00	0.00	0.00	4.30
80	94	2.122989	GGGGATAGGGAGCGGTGA	60.123	66.667	0.00	0.00	0.00	4.02
81	95	2.445845	TGGGGATAGGGAGCGGTG	60.446	66.667	0.00	0.00	0.00	4.94
82	96	2.446036	GTGGGGATAGGGAGCGGT	60.446	66.667	0.00	0.00	0.00	5.68
83	97	2.122813	AGTGGGGATAGGGAGCGG	60.123	66.667	0.00	0.00	0.00	5.52
84	98	1.152440	AGAGTGGGGATAGGGAGCG	60.152	63.158	0.00	0.00	0.00	5.03
85	99	0.834261	GGAGAGTGGGGATAGGGAGC	60.834	65.000	0.00	0.00	0.00	4.70
86	100	0.178918	GGGAGAGTGGGGATAGGGAG	60.179	65.000	0.00	0.00	0.00	4.30
87	101	1.947041	GGGAGAGTGGGGATAGGGA	59.053	63.158	0.00	0.00	0.00	4.20
88	102	1.534235	CGGGAGAGTGGGGATAGGG	60.534	68.421	0.00	0.00	0.00	3.53
89	103	0.828343	GTCGGGAGAGTGGGGATAGG	60.828	65.000	0.00	0.00	41.26	2.57
92	106	1.075896	GAGTCGGGAGAGTGGGGAT	60.076	63.158	0.00	0.00	43.98	3.85
120	154	1.454111	CTCTCCTCCGATCCACCGT	60.454	63.158	0.00	0.00	0.00	4.83
173	207	2.114670	CGCGGGCCAAGTGATGATT	61.115	57.895	4.39	0.00	0.00	2.57
233	267	1.063412	GCCGGATCAAACGCGAAAAC	61.063	55.000	15.93	0.00	0.00	2.43
306	340	7.780745	ACTAGTATGAAGTAGTATGAACTGCCT	59.219	37.037	0.00	0.00	39.60	4.75
356	444	2.625314	TCCTTCTACTCCATCTGCATCG	59.375	50.000	0.00	0.00	0.00	3.84
370	458	3.463329	CCAATCCCCCAATTCTCCTTCTA	59.537	47.826	0.00	0.00	0.00	2.10
371	459	2.245806	CCAATCCCCCAATTCTCCTTCT	59.754	50.000	0.00	0.00	0.00	2.85
372	460	2.670939	CCAATCCCCCAATTCTCCTTC	58.329	52.381	0.00	0.00	0.00	3.46
379	467	0.639943	GTACCCCCAATCCCCCAATT	59.360	55.000	0.00	0.00	0.00	2.32
540	650	4.849329	GAGCCAGGCCGTCGTACG	62.849	72.222	8.22	9.53	42.11	3.67
633	751	1.982938	GGTGTACTGGGAGACGGCT	60.983	63.158	0.00	0.00	0.00	5.52
682	800	4.338379	AGAAGTGGTCCAAGTACAAGAC	57.662	45.455	0.00	0.00	0.00	3.01
838	956	3.954200	TGCTTGACATGCAGAAGGAATA	58.046	40.909	11.69	0.00	35.31	1.75
1014	1133	5.200483	CCCTCTCTTCTCTCACTATCAACT	58.800	45.833	0.00	0.00	0.00	3.16
1053	1172	3.864789	ATATTTACTCACCCTGCCCAG	57.135	47.619	0.00	0.00	0.00	4.45
1088	1207	2.233431	GCATGACTGTCACTCTTCCTCT	59.767	50.000	13.50	0.00	0.00	3.69
1132	1255	2.932614	CAGCACAGAGTACATGGCTTAC	59.067	50.000	0.00	0.00	0.00	2.34
1142	1265	0.318441	GTCAGGCACAGCACAGAGTA	59.682	55.000	0.00	0.00	0.00	2.59
1162	1285	4.193865	TCGATCTGCACACAATTCATGAT	58.806	39.130	0.00	0.00	0.00	2.45
1163	1286	3.598299	TCGATCTGCACACAATTCATGA	58.402	40.909	0.00	0.00	0.00	3.07
1296	1419	2.943978	AACCTCAGGCGTCTTCGGG	61.944	63.158	6.34	2.68	37.56	5.14
1317	1440	2.678580	TCCATGCCCTCGTCGTCA	60.679	61.111	0.00	0.00	0.00	4.35
1341	1465	3.283684	CGGCGCTTGTTGTTGGGA	61.284	61.111	7.64	0.00	0.00	4.37
1377	1505	2.276309	GAGTTGGGCCATCCTCCTGG	62.276	65.000	18.36	0.00	39.45	4.45
1435	1565	4.129148	GTCCAGGGGCATGGGGAC	62.129	72.222	7.99	4.87	42.60	4.46
1491	1621	1.068588	CAGACGGTGTTGTTCCTGAGA	59.931	52.381	0.00	0.00	0.00	3.27
1508	1638	0.471780	TGTCACCTTCCAGGAGCAGA	60.472	55.000	0.00	0.00	37.67	4.26
1527	1657	0.035317	TGCCGTTCATCAGCTTCACT	59.965	50.000	0.00	0.00	0.00	3.41
1592	1722	2.037772	ACCATGTAGCCGATCTTGATCC	59.962	50.000	5.18	0.00	0.00	3.36
1617	1747	0.108424	CGGGAGTGAGGAGCTTGAAG	60.108	60.000	0.00	0.00	0.00	3.02
1680	1810	1.444119	GCTTCCCGCACTTGTTGACA	61.444	55.000	0.00	0.00	38.92	3.58
1826	1979	5.551233	AGCATCAACTACTTAACAGCAGAA	58.449	37.500	0.00	0.00	0.00	3.02
1828	1981	5.174395	AGAGCATCAACTACTTAACAGCAG	58.826	41.667	0.00	0.00	37.82	4.24
1958	2111	1.270252	CCAAGGCATGGTGTTTGGTTC	60.270	52.381	0.00	0.00	44.85	3.62
2008	2161	0.396435	CTGAACCACACTGCCTGGTA	59.604	55.000	0.00	0.00	41.45	3.25
2040	2193	1.453928	GGTTGCCTACATGCCCTCC	60.454	63.158	0.00	0.00	0.00	4.30
2050	2203	2.100584	CTGCAAGTTGTTTGGTTGCCTA	59.899	45.455	4.48	0.00	44.90	3.93
2148	2301	1.153208	TACGGGCGTGTTTGGTTGT	60.153	52.632	0.00	0.00	0.00	3.32
2171	2324	1.239347	GAGCCAAGTCAAGGGTGAAC	58.761	55.000	0.00	0.00	36.91	3.18
2173	2326	0.768221	AGGAGCCAAGTCAAGGGTGA	60.768	55.000	0.00	0.00	36.91	4.02
2174	2327	0.984230	TAGGAGCCAAGTCAAGGGTG	59.016	55.000	0.00	0.00	36.91	4.61
2175	2328	1.972588	ATAGGAGCCAAGTCAAGGGT	58.027	50.000	0.00	0.00	40.09	4.34
2176	2329	2.370189	CCTATAGGAGCCAAGTCAAGGG	59.630	54.545	14.11	0.00	37.39	3.95
2177	2330	2.370189	CCCTATAGGAGCCAAGTCAAGG	59.630	54.545	21.07	0.00	38.24	3.61
2178	2331	2.224402	GCCCTATAGGAGCCAAGTCAAG	60.224	54.545	21.07	0.00	38.24	3.02
2179	2332	1.768870	GCCCTATAGGAGCCAAGTCAA	59.231	52.381	21.07	0.00	38.24	3.18
2180	2333	1.062121	AGCCCTATAGGAGCCAAGTCA	60.062	52.381	21.07	0.00	38.24	3.41
2181	2334	1.723288	AGCCCTATAGGAGCCAAGTC	58.277	55.000	21.07	0.00	38.24	3.01
2182	2335	2.451273	TCTAGCCCTATAGGAGCCAAGT	59.549	50.000	21.07	8.31	38.24	3.16
2183	2336	3.176924	TCTAGCCCTATAGGAGCCAAG	57.823	52.381	21.07	18.66	38.24	3.61
2184	2337	3.630625	TTCTAGCCCTATAGGAGCCAA	57.369	47.619	21.07	11.33	38.24	4.52
2185	2338	3.854801	ATTCTAGCCCTATAGGAGCCA	57.145	47.619	21.07	9.87	38.24	4.75
2186	2339	3.131400	CGAATTCTAGCCCTATAGGAGCC	59.869	52.174	21.07	8.03	38.24	4.70
2187	2340	4.017808	TCGAATTCTAGCCCTATAGGAGC	58.982	47.826	21.07	19.96	38.24	4.70
2188	2341	4.097286	GCTCGAATTCTAGCCCTATAGGAG	59.903	50.000	21.07	9.88	38.24	3.69
2189	2342	4.017808	GCTCGAATTCTAGCCCTATAGGA	58.982	47.826	21.07	0.00	38.24	2.94
2190	2343	4.379339	GCTCGAATTCTAGCCCTATAGG	57.621	50.000	18.72	12.27	39.47	2.57
2201	2354	0.378962	CTCGACTCGGCTCGAATTCT	59.621	55.000	3.52	0.00	42.00	2.40
2268	2421	4.273235	TCGTTATAATAACGAGCCGAGTCA	59.727	41.667	0.00	0.00	46.21	3.41
2486	2643	2.822637	CCCTATGTCCCAGGCGCAT	61.823	63.158	10.83	0.00	0.00	4.73
2534	2694	2.673368	CGGTACAAAAGATCAGCCACTC	59.327	50.000	0.00	0.00	0.00	3.51
2617	2791	3.864003	GTCGAGCCGAGCTTTAGTTTAAT	59.136	43.478	0.00	0.00	39.88	1.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.