Multiple sequence alignment - TraesCS6D01G356600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G356600 chr6D 100.000 8558 0 0 1 8558 450696929 450688372 0.000000e+00 15804.0
1 TraesCS6D01G356600 chr6D 91.660 1307 81 6 3742 5024 296696760 296695458 0.000000e+00 1784.0
2 TraesCS6D01G356600 chr6D 97.500 40 1 0 7303 7342 450689512 450689473 1.540000e-07 69.4
3 TraesCS6D01G356600 chr6D 97.500 40 1 0 7418 7457 450689627 450689588 1.540000e-07 69.4
4 TraesCS6D01G356600 chr6B 94.808 6722 244 53 651 7301 684444513 684437826 0.000000e+00 10382.0
5 TraesCS6D01G356600 chr6B 95.429 722 26 1 7343 8057 684437668 684436947 0.000000e+00 1144.0
6 TraesCS6D01G356600 chr6B 95.745 188 6 1 8371 8558 684436950 684436765 1.400000e-77 302.0
7 TraesCS6D01G356600 chr6B 78.571 280 28 12 602 849 684446449 684446170 1.150000e-33 156.0
8 TraesCS6D01G356600 chr6B 97.500 40 1 0 7303 7342 684437593 684437554 1.540000e-07 69.4
9 TraesCS6D01G356600 chr6B 100.000 35 0 0 1545 1579 59825776 59825810 1.990000e-06 65.8
10 TraesCS6D01G356600 chr6A 96.682 5546 167 9 1759 7301 596294824 596289293 0.000000e+00 9206.0
11 TraesCS6D01G356600 chr6A 97.150 1614 35 3 6453 8057 596307173 596305562 0.000000e+00 2715.0
12 TraesCS6D01G356600 chr6A 93.160 1535 50 25 1028 2524 596311415 596309898 0.000000e+00 2202.0
13 TraesCS6D01G356600 chr6A 97.502 1201 28 2 2564 3764 596309897 596308699 0.000000e+00 2050.0
14 TraesCS6D01G356600 chr6A 94.700 1302 50 13 5101 6401 596308702 596307419 0.000000e+00 2004.0
15 TraesCS6D01G356600 chr6A 89.870 1303 109 5 3742 5024 602701020 602702319 0.000000e+00 1653.0
16 TraesCS6D01G356600 chr6A 96.127 852 30 2 1 849 596317350 596316499 0.000000e+00 1387.0
17 TraesCS6D01G356600 chr6A 93.100 942 42 9 649 1571 596295947 596295010 0.000000e+00 1358.0
18 TraesCS6D01G356600 chr6A 95.580 724 23 2 7343 8057 596289134 596288411 0.000000e+00 1151.0
19 TraesCS6D01G356600 chr6A 92.264 349 20 3 1 342 596296490 596296142 9.980000e-134 488.0
20 TraesCS6D01G356600 chr6A 96.257 187 7 0 8372 8558 596305564 596305378 3.000000e-79 307.0
21 TraesCS6D01G356600 chr6A 94.681 188 10 0 8371 8558 596288414 596288227 8.400000e-75 292.0
22 TraesCS6D01G356600 chr6A 90.647 139 6 2 894 1032 596316482 596316351 2.450000e-40 178.0
23 TraesCS6D01G356600 chr6A 92.424 66 5 0 1584 1649 596294888 596294823 2.540000e-15 95.3
24 TraesCS6D01G356600 chr6A 97.500 40 1 0 7418 7457 596306321 596306282 1.540000e-07 69.4
25 TraesCS6D01G356600 chr6A 95.000 40 2 0 7303 7342 596289059 596289020 7.170000e-06 63.9
26 TraesCS6D01G356600 chr6A 95.000 40 2 0 7303 7342 596306206 596306167 7.170000e-06 63.9
27 TraesCS6D01G356600 chr6A 96.970 33 1 0 1545 1577 33013692 33013724 1.000000e-03 56.5
28 TraesCS6D01G356600 chr2A 90.483 1303 101 4 3742 5024 578390515 578391814 0.000000e+00 1698.0
29 TraesCS6D01G356600 chr2A 89.796 49 4 1 1531 1579 32146211 32146258 2.580000e-05 62.1
30 TraesCS6D01G356600 chr2B 90.367 1308 94 11 3742 5024 168845039 168846339 0.000000e+00 1688.0
31 TraesCS6D01G356600 chr2B 94.937 316 16 0 8058 8373 210261855 210261540 5.970000e-136 496.0
32 TraesCS6D01G356600 chr2D 90.253 1303 107 5 3742 5024 364091368 364092670 0.000000e+00 1685.0
33 TraesCS6D01G356600 chr2D 90.250 1282 117 3 3746 5024 321177436 321176160 0.000000e+00 1668.0
34 TraesCS6D01G356600 chr2D 96.584 322 11 0 8052 8373 214105469 214105790 1.260000e-147 534.0
35 TraesCS6D01G356600 chr7A 90.253 1303 104 4 3742 5024 94787524 94788823 0.000000e+00 1681.0
36 TraesCS6D01G356600 chr7A 97.143 35 1 0 1545 1579 167261677 167261643 9.280000e-05 60.2
37 TraesCS6D01G356600 chr5B 90.199 1306 105 5 3742 5024 384589691 384590996 0.000000e+00 1681.0
38 TraesCS6D01G356600 chr5B 86.538 312 30 7 8058 8369 708348736 708349035 4.950000e-87 333.0
39 TraesCS6D01G356600 chr5B 94.444 36 0 2 3713 3748 568832816 568832849 4.000000e-03 54.7
40 TraesCS6D01G356600 chr1D 89.945 1283 125 3 3742 5024 312515462 312514184 0.000000e+00 1652.0
41 TraesCS6D01G356600 chr1D 91.429 700 55 2 3742 4441 411572572 411571878 0.000000e+00 955.0
42 TraesCS6D01G356600 chr1D 94.872 39 1 1 1545 1582 420648962 420649000 9.280000e-05 60.2
43 TraesCS6D01G356600 chr4D 89.318 983 83 4 3742 4704 211041918 211042898 0.000000e+00 1214.0
44 TraesCS6D01G356600 chr1A 91.750 703 54 3 3742 4441 508148950 508148249 0.000000e+00 974.0
45 TraesCS6D01G356600 chr3B 85.326 736 73 12 3940 4674 382705439 382704738 0.000000e+00 728.0
46 TraesCS6D01G356600 chr3B 79.523 503 78 16 5732 6219 433769907 433769415 1.380000e-87 335.0
47 TraesCS6D01G356600 chr3B 77.441 594 92 18 2351 2941 433775422 433774868 4.990000e-82 316.0
48 TraesCS6D01G356600 chr3B 81.662 349 51 8 1790 2132 433775920 433775579 2.350000e-70 278.0
49 TraesCS6D01G356600 chr3B 90.850 153 14 0 1207 1359 433779761 433779609 1.130000e-48 206.0
50 TraesCS6D01G356600 chr3D 85.190 736 74 12 3940 4674 290590021 290589320 0.000000e+00 723.0
51 TraesCS6D01G356600 chr3D 79.132 599 73 20 2351 2941 335219684 335219130 4.880000e-97 366.0
52 TraesCS6D01G356600 chr3D 78.838 482 71 20 5732 6200 335210565 335210102 6.500000e-76 296.0
53 TraesCS6D01G356600 chr3D 82.254 355 50 9 1785 2133 335220187 335219840 2.340000e-75 294.0
54 TraesCS6D01G356600 chr3D 91.503 153 13 0 1207 1359 335226703 335226551 2.420000e-50 211.0
55 TraesCS6D01G356600 chr3D 94.286 35 1 1 3713 3746 234274323 234274357 1.600000e-02 52.8
56 TraesCS6D01G356600 chr7B 94.937 316 16 0 8057 8372 641605222 641604907 5.970000e-136 496.0
57 TraesCS6D01G356600 chr7B 97.143 35 1 0 1545 1579 129535850 129535816 9.280000e-05 60.2
58 TraesCS6D01G356600 chr4A 87.619 315 27 7 8058 8372 659678935 659678633 1.060000e-93 355.0
59 TraesCS6D01G356600 chr4A 92.308 130 10 0 8058 8187 659640697 659640568 1.470000e-42 185.0
60 TraesCS6D01G356600 chr3A 78.438 589 86 17 2351 2936 453312577 453312027 6.360000e-91 346.0
61 TraesCS6D01G356600 chr3A 82.000 350 50 9 1790 2133 453313075 453312733 1.410000e-72 285.0
62 TraesCS6D01G356600 chr3A 91.503 153 13 0 1207 1359 453316921 453316769 2.420000e-50 211.0
63 TraesCS6D01G356600 chr5D 86.624 314 16 6 8059 8372 108368762 108368475 2.980000e-84 324.0
64 TraesCS6D01G356600 chr5D 96.970 33 1 0 1545 1577 12985480 12985448 1.000000e-03 56.5
65 TraesCS6D01G356600 chr7D 100.000 31 0 0 1549 1579 90810977 90810947 3.340000e-04 58.4
66 TraesCS6D01G356600 chr5A 100.000 31 0 0 1549 1579 30215469 30215439 3.340000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G356600 chr6D 450688372 450696929 8557 True 15804.000000 15804 100.000000 1 8558 1 chr6D.!!$R2 8557
1 TraesCS6D01G356600 chr6D 296695458 296696760 1302 True 1784.000000 1784 91.660000 3742 5024 1 chr6D.!!$R1 1282
2 TraesCS6D01G356600 chr6B 684436765 684446449 9684 True 2410.680000 10382 92.410600 602 8558 5 chr6B.!!$R1 7956
3 TraesCS6D01G356600 chr6A 596288227 596296490 8263 True 1807.742857 9206 94.247286 1 8558 7 chr6A.!!$R1 8557
4 TraesCS6D01G356600 chr6A 602701020 602702319 1299 False 1653.000000 1653 89.870000 3742 5024 1 chr6A.!!$F2 1282
5 TraesCS6D01G356600 chr6A 596305378 596311415 6037 True 1344.471429 2715 95.895571 1028 8558 7 chr6A.!!$R2 7530
6 TraesCS6D01G356600 chr6A 596316351 596317350 999 True 782.500000 1387 93.387000 1 1032 2 chr6A.!!$R3 1031
7 TraesCS6D01G356600 chr2A 578390515 578391814 1299 False 1698.000000 1698 90.483000 3742 5024 1 chr2A.!!$F2 1282
8 TraesCS6D01G356600 chr2B 168845039 168846339 1300 False 1688.000000 1688 90.367000 3742 5024 1 chr2B.!!$F1 1282
9 TraesCS6D01G356600 chr2D 364091368 364092670 1302 False 1685.000000 1685 90.253000 3742 5024 1 chr2D.!!$F2 1282
10 TraesCS6D01G356600 chr2D 321176160 321177436 1276 True 1668.000000 1668 90.250000 3746 5024 1 chr2D.!!$R1 1278
11 TraesCS6D01G356600 chr7A 94787524 94788823 1299 False 1681.000000 1681 90.253000 3742 5024 1 chr7A.!!$F1 1282
12 TraesCS6D01G356600 chr5B 384589691 384590996 1305 False 1681.000000 1681 90.199000 3742 5024 1 chr5B.!!$F1 1282
13 TraesCS6D01G356600 chr1D 312514184 312515462 1278 True 1652.000000 1652 89.945000 3742 5024 1 chr1D.!!$R1 1282
14 TraesCS6D01G356600 chr1D 411571878 411572572 694 True 955.000000 955 91.429000 3742 4441 1 chr1D.!!$R2 699
15 TraesCS6D01G356600 chr4D 211041918 211042898 980 False 1214.000000 1214 89.318000 3742 4704 1 chr4D.!!$F1 962
16 TraesCS6D01G356600 chr1A 508148249 508148950 701 True 974.000000 974 91.750000 3742 4441 1 chr1A.!!$R1 699
17 TraesCS6D01G356600 chr3B 382704738 382705439 701 True 728.000000 728 85.326000 3940 4674 1 chr3B.!!$R1 734
18 TraesCS6D01G356600 chr3B 433774868 433779761 4893 True 266.666667 316 83.317667 1207 2941 3 chr3B.!!$R3 1734
19 TraesCS6D01G356600 chr3D 290589320 290590021 701 True 723.000000 723 85.190000 3940 4674 1 chr3D.!!$R1 734
20 TraesCS6D01G356600 chr3D 335219130 335220187 1057 True 330.000000 366 80.693000 1785 2941 2 chr3D.!!$R4 1156
21 TraesCS6D01G356600 chr3A 453312027 453316921 4894 True 280.666667 346 83.980333 1207 2936 3 chr3A.!!$R1 1729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 526 0.529773 GCGGCCACATACGATCAAGA 60.530 55.000 2.24 0.00 0.00 3.02 F
586 595 1.472480 GGCGCAATCAACCACAATACT 59.528 47.619 10.83 0.00 0.00 2.12 F
1850 7110 0.039256 CACTTCGTTACGGAACCGGA 60.039 55.000 9.46 6.09 44.69 5.14 F
2573 7838 0.110486 GGCAGGTGGGTCTCTTTCAA 59.890 55.000 0.00 0.00 0.00 2.69 F
3500 8777 0.535335 TCAGTACAGGCAACGGATCC 59.465 55.000 0.00 0.00 46.39 3.36 F
3905 9182 1.208293 GGACTCCTCCCATGTCAAGTC 59.792 57.143 0.00 0.00 33.93 3.01 F
4679 9982 1.603802 CAGTGTCGCCATCACTTGTTT 59.396 47.619 0.00 0.00 43.14 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 7075 0.537371 AGTGCGACCCTTTTTCCTGG 60.537 55.000 0.00 0.00 0.00 4.45 R
2468 7733 2.091055 TCCAAACACAATTTCTCCCCCA 60.091 45.455 0.00 0.00 0.00 4.96 R
3826 9103 1.367346 TTAGCCATGGACAAGGGTGA 58.633 50.000 18.40 0.00 36.86 4.02 R
4259 9538 3.207265 TGAAGTGGCACAAAGCTTCTA 57.793 42.857 21.41 3.06 44.16 2.10 R
5095 10398 0.319555 TGTGCACGGTGCTCTTAGAC 60.320 55.000 30.81 20.40 45.31 2.59 R
5815 11124 3.627577 CGAATACCAAAGCTGCCATTACT 59.372 43.478 0.00 0.00 0.00 2.24 R
7560 13184 1.227205 CTCTGCAGCTCATCCGGTC 60.227 63.158 9.47 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.829222 CCTCCCTCCTTAGTTTGCGTA 59.171 52.381 0.00 0.00 0.00 4.42
133 138 3.723235 GATGCTCGAAGCTCCGCCA 62.723 63.158 0.00 0.00 42.97 5.69
184 189 1.207089 GTGGAGATCGGGTGACAATCA 59.793 52.381 0.00 0.00 0.00 2.57
268 275 9.226345 GCACAACATAGCATAAAGATACTTTTC 57.774 33.333 2.17 0.00 0.00 2.29
447 456 1.139853 ACCGGAAGCATCTCAAGATCC 59.860 52.381 9.46 0.00 31.21 3.36
482 491 1.678970 GGCCGGCTTGGACTGAAAT 60.679 57.895 28.56 0.00 45.46 2.17
514 523 2.108157 GGCGGCCACATACGATCA 59.892 61.111 15.62 0.00 0.00 2.92
517 526 0.529773 GCGGCCACATACGATCAAGA 60.530 55.000 2.24 0.00 0.00 3.02
586 595 1.472480 GGCGCAATCAACCACAATACT 59.528 47.619 10.83 0.00 0.00 2.12
975 2892 2.095466 CGACTGTGGTGACTTCTCTCTC 60.095 54.545 0.00 0.00 0.00 3.20
1467 3427 2.125912 CACGCGAGCTACAAGGCT 60.126 61.111 15.93 0.00 46.11 4.58
1704 4525 3.178046 TCAGTTGGGCATTAGGTAGACA 58.822 45.455 0.00 0.00 0.00 3.41
1815 7075 6.530019 TCTAATTTTCATTTCCCCTCTTGC 57.470 37.500 0.00 0.00 0.00 4.01
1850 7110 0.039256 CACTTCGTTACGGAACCGGA 60.039 55.000 9.46 6.09 44.69 5.14
1898 7158 1.484038 ATGTGCAAGTTGGTGGTGTT 58.516 45.000 4.75 0.00 0.00 3.32
1971 7236 6.268387 TCTCTAACCATCTATCATGTGCATCA 59.732 38.462 0.00 0.00 0.00 3.07
1988 7253 6.758416 TGTGCATCACATTTCAGAGTATACTC 59.242 38.462 22.97 22.97 39.62 2.59
2573 7838 0.110486 GGCAGGTGGGTCTCTTTCAA 59.890 55.000 0.00 0.00 0.00 2.69
3161 8438 3.057526 GGGTAAGCACTAAAGCAAACTGG 60.058 47.826 0.00 0.00 36.85 4.00
3488 8765 4.380531 CAAGGAAGTTGCTTCTCAGTACA 58.619 43.478 6.67 0.00 40.07 2.90
3500 8777 0.535335 TCAGTACAGGCAACGGATCC 59.465 55.000 0.00 0.00 46.39 3.36
3711 8988 5.040635 CGTGAACAACAACAAAGCCTTTAT 58.959 37.500 0.00 0.00 0.00 1.40
3758 9035 4.529716 AAAGAAACAAGTTGGGGTAGGA 57.470 40.909 7.96 0.00 0.00 2.94
3826 9103 2.240667 ACATGGATAGCAAGCTTCCACT 59.759 45.455 20.41 2.58 42.09 4.00
3905 9182 1.208293 GGACTCCTCCCATGTCAAGTC 59.792 57.143 0.00 0.00 33.93 3.01
4679 9982 1.603802 CAGTGTCGCCATCACTTGTTT 59.396 47.619 0.00 0.00 43.14 2.83
5092 10395 3.035363 TGGCATATGTAGTCGGGAGAAA 58.965 45.455 4.29 0.00 42.89 2.52
5095 10398 3.555168 GCATATGTAGTCGGGAGAAAGGG 60.555 52.174 4.29 0.00 42.89 3.95
5422 10729 7.985184 GTGAATGATACCATTGGTAGTACAAGA 59.015 37.037 19.82 0.00 41.83 3.02
5437 10744 7.335924 GGTAGTACAAGACTATGCAATTTCCAA 59.664 37.037 2.06 0.00 42.69 3.53
5438 10745 7.759489 AGTACAAGACTATGCAATTTCCAAA 57.241 32.000 0.00 0.00 36.27 3.28
5815 11124 3.295093 TGACATTGTTTCCTCCTGCAAA 58.705 40.909 0.00 0.00 0.00 3.68
5878 11187 0.870393 CGGGAGATCAAATGATGCCG 59.130 55.000 0.00 1.67 34.37 5.69
6533 12037 3.607163 CCGGAGGCGGTACAACTA 58.393 61.111 0.00 0.00 46.14 2.24
6987 12494 4.520492 AGAAAGTCGCCAAACAATGATCTT 59.480 37.500 0.00 0.00 0.00 2.40
7211 12718 2.742053 CCACAACTAACTGCTATGCGTT 59.258 45.455 0.00 0.00 32.46 4.84
7253 12760 7.307632 CGATAAAATGACATTCTCATCCACCTC 60.308 40.741 0.05 0.00 38.82 3.85
7560 13184 3.248029 GCGAAGGCGGCATAGATG 58.752 61.111 13.08 0.00 38.16 2.90
7781 13405 9.280174 CTAAGGTGGATTGTAAACTGAAAACTA 57.720 33.333 0.00 0.00 0.00 2.24
7958 13589 1.883275 CCTACATCTCGATCTTCCGCT 59.117 52.381 0.00 0.00 0.00 5.52
8041 13674 0.759959 TTGGCTTAGTTCCGGTCACA 59.240 50.000 0.00 0.00 0.00 3.58
8066 13699 3.365535 GCATCTTGGGGTGCGTTT 58.634 55.556 0.00 0.00 0.00 3.60
8067 13700 1.080569 GCATCTTGGGGTGCGTTTG 60.081 57.895 0.00 0.00 0.00 2.93
8068 13701 1.586028 CATCTTGGGGTGCGTTTGG 59.414 57.895 0.00 0.00 0.00 3.28
8069 13702 1.152830 ATCTTGGGGTGCGTTTGGT 59.847 52.632 0.00 0.00 0.00 3.67
8070 13703 0.469144 ATCTTGGGGTGCGTTTGGTT 60.469 50.000 0.00 0.00 0.00 3.67
8071 13704 1.104577 TCTTGGGGTGCGTTTGGTTC 61.105 55.000 0.00 0.00 0.00 3.62
8072 13705 1.076632 TTGGGGTGCGTTTGGTTCT 60.077 52.632 0.00 0.00 0.00 3.01
8073 13706 0.183014 TTGGGGTGCGTTTGGTTCTA 59.817 50.000 0.00 0.00 0.00 2.10
8074 13707 0.183014 TGGGGTGCGTTTGGTTCTAA 59.817 50.000 0.00 0.00 0.00 2.10
8075 13708 0.879090 GGGGTGCGTTTGGTTCTAAG 59.121 55.000 0.00 0.00 0.00 2.18
8076 13709 0.879090 GGGTGCGTTTGGTTCTAAGG 59.121 55.000 0.00 0.00 0.00 2.69
8077 13710 0.240145 GGTGCGTTTGGTTCTAAGGC 59.760 55.000 0.00 0.00 37.02 4.35
8078 13711 0.948678 GTGCGTTTGGTTCTAAGGCA 59.051 50.000 5.65 5.65 42.16 4.75
8079 13712 1.335496 GTGCGTTTGGTTCTAAGGCAA 59.665 47.619 9.95 0.00 44.75 4.52
8080 13713 1.606668 TGCGTTTGGTTCTAAGGCAAG 59.393 47.619 6.91 0.00 41.66 4.01
8081 13714 1.068541 GCGTTTGGTTCTAAGGCAAGG 60.069 52.381 0.00 0.00 36.63 3.61
8082 13715 2.500229 CGTTTGGTTCTAAGGCAAGGA 58.500 47.619 0.00 0.00 0.00 3.36
8083 13716 2.225727 CGTTTGGTTCTAAGGCAAGGAC 59.774 50.000 0.00 0.00 0.00 3.85
8084 13717 3.219281 GTTTGGTTCTAAGGCAAGGACA 58.781 45.455 1.34 0.00 0.00 4.02
8085 13718 2.859165 TGGTTCTAAGGCAAGGACAG 57.141 50.000 1.34 0.00 0.00 3.51
8086 13719 2.054799 TGGTTCTAAGGCAAGGACAGT 58.945 47.619 1.34 0.00 0.00 3.55
8087 13720 2.441750 TGGTTCTAAGGCAAGGACAGTT 59.558 45.455 1.34 0.00 0.00 3.16
8088 13721 3.117663 TGGTTCTAAGGCAAGGACAGTTT 60.118 43.478 1.34 0.00 0.00 2.66
8089 13722 3.889538 GGTTCTAAGGCAAGGACAGTTTT 59.110 43.478 1.34 0.00 0.00 2.43
8090 13723 5.067954 GGTTCTAAGGCAAGGACAGTTTTA 58.932 41.667 1.34 0.00 0.00 1.52
8091 13724 5.181433 GGTTCTAAGGCAAGGACAGTTTTAG 59.819 44.000 1.34 0.00 0.00 1.85
8092 13725 4.324267 TCTAAGGCAAGGACAGTTTTAGC 58.676 43.478 0.00 0.00 0.00 3.09
8093 13726 1.911057 AGGCAAGGACAGTTTTAGCC 58.089 50.000 0.00 0.00 40.85 3.93
8094 13727 1.425448 AGGCAAGGACAGTTTTAGCCT 59.575 47.619 0.00 0.00 45.49 4.58
8095 13728 2.239400 GGCAAGGACAGTTTTAGCCTT 58.761 47.619 0.00 0.00 41.22 4.35
8098 13731 1.911057 AGGACAGTTTTAGCCTTGCC 58.089 50.000 0.00 0.00 0.00 4.52
8099 13732 1.425448 AGGACAGTTTTAGCCTTGCCT 59.575 47.619 0.00 0.00 0.00 4.75
8100 13733 2.642807 AGGACAGTTTTAGCCTTGCCTA 59.357 45.455 0.00 0.00 0.00 3.93
8101 13734 3.010420 GGACAGTTTTAGCCTTGCCTAG 58.990 50.000 0.00 0.00 0.00 3.02
8102 13735 2.420372 GACAGTTTTAGCCTTGCCTAGC 59.580 50.000 0.00 0.00 0.00 3.42
8103 13736 2.224769 ACAGTTTTAGCCTTGCCTAGCA 60.225 45.455 0.00 0.00 36.47 3.49
8104 13737 2.819608 CAGTTTTAGCCTTGCCTAGCAA 59.180 45.455 1.57 1.57 46.80 3.91
8121 13754 3.609103 GCAAGGATATGCGTTTGGTAG 57.391 47.619 0.00 0.00 36.45 3.18
8122 13755 3.202906 GCAAGGATATGCGTTTGGTAGA 58.797 45.455 0.00 0.00 36.45 2.59
8123 13756 3.248602 GCAAGGATATGCGTTTGGTAGAG 59.751 47.826 0.00 0.00 36.45 2.43
8124 13757 4.442706 CAAGGATATGCGTTTGGTAGAGT 58.557 43.478 0.00 0.00 0.00 3.24
8125 13758 5.597806 CAAGGATATGCGTTTGGTAGAGTA 58.402 41.667 0.00 0.00 0.00 2.59
8126 13759 5.864418 AGGATATGCGTTTGGTAGAGTAA 57.136 39.130 0.00 0.00 0.00 2.24
8127 13760 6.420913 AGGATATGCGTTTGGTAGAGTAAT 57.579 37.500 0.00 0.00 0.00 1.89
8128 13761 7.534723 AGGATATGCGTTTGGTAGAGTAATA 57.465 36.000 0.00 0.00 0.00 0.98
8129 13762 8.135382 AGGATATGCGTTTGGTAGAGTAATAT 57.865 34.615 0.00 0.00 0.00 1.28
8130 13763 9.251440 AGGATATGCGTTTGGTAGAGTAATATA 57.749 33.333 0.00 0.00 0.00 0.86
8135 13768 8.951787 TGCGTTTGGTAGAGTAATATATTGTT 57.048 30.769 8.28 0.00 0.00 2.83
8136 13769 9.386010 TGCGTTTGGTAGAGTAATATATTGTTT 57.614 29.630 8.28 0.00 0.00 2.83
8137 13770 9.646336 GCGTTTGGTAGAGTAATATATTGTTTG 57.354 33.333 8.28 0.00 0.00 2.93
8138 13771 9.646336 CGTTTGGTAGAGTAATATATTGTTTGC 57.354 33.333 8.28 0.00 0.00 3.68
8151 13784 9.603921 AATATATTGTTTGCTTTTGGATGGAAG 57.396 29.630 0.00 0.00 0.00 3.46
8152 13785 4.751767 TTGTTTGCTTTTGGATGGAAGT 57.248 36.364 0.00 0.00 0.00 3.01
8153 13786 4.751767 TGTTTGCTTTTGGATGGAAGTT 57.248 36.364 0.00 0.00 0.00 2.66
8154 13787 5.096443 TGTTTGCTTTTGGATGGAAGTTT 57.904 34.783 0.00 0.00 0.00 2.66
8155 13788 4.874966 TGTTTGCTTTTGGATGGAAGTTTG 59.125 37.500 0.00 0.00 0.00 2.93
8156 13789 3.110447 TGCTTTTGGATGGAAGTTTGC 57.890 42.857 0.00 0.00 0.00 3.68
8157 13790 2.699846 TGCTTTTGGATGGAAGTTTGCT 59.300 40.909 0.00 0.00 0.00 3.91
8158 13791 3.243839 TGCTTTTGGATGGAAGTTTGCTC 60.244 43.478 0.00 0.00 0.00 4.26
8159 13792 3.568538 CTTTTGGATGGAAGTTTGCTCG 58.431 45.455 0.00 0.00 0.00 5.03
8160 13793 2.270352 TTGGATGGAAGTTTGCTCGT 57.730 45.000 0.00 0.00 0.00 4.18
8161 13794 3.410631 TTGGATGGAAGTTTGCTCGTA 57.589 42.857 0.00 0.00 0.00 3.43
8162 13795 3.410631 TGGATGGAAGTTTGCTCGTAA 57.589 42.857 0.00 0.00 0.00 3.18
8163 13796 3.071479 TGGATGGAAGTTTGCTCGTAAC 58.929 45.455 0.00 0.00 0.00 2.50
8164 13797 3.244422 TGGATGGAAGTTTGCTCGTAACT 60.244 43.478 0.00 0.00 37.43 2.24
8165 13798 3.125316 GGATGGAAGTTTGCTCGTAACTG 59.875 47.826 0.00 0.00 36.06 3.16
8166 13799 1.871039 TGGAAGTTTGCTCGTAACTGC 59.129 47.619 0.00 0.00 36.06 4.40
8167 13800 1.871039 GGAAGTTTGCTCGTAACTGCA 59.129 47.619 0.00 0.00 36.06 4.41
8168 13801 2.484264 GGAAGTTTGCTCGTAACTGCAT 59.516 45.455 0.00 0.00 39.07 3.96
8169 13802 3.424962 GGAAGTTTGCTCGTAACTGCATC 60.425 47.826 0.00 0.00 39.07 3.91
8170 13803 3.045601 AGTTTGCTCGTAACTGCATCT 57.954 42.857 0.00 0.00 39.07 2.90
8171 13804 4.188247 AGTTTGCTCGTAACTGCATCTA 57.812 40.909 0.00 0.00 39.07 1.98
8172 13805 4.566004 AGTTTGCTCGTAACTGCATCTAA 58.434 39.130 0.00 0.00 39.07 2.10
8173 13806 4.994852 AGTTTGCTCGTAACTGCATCTAAA 59.005 37.500 0.00 0.00 39.07 1.85
8174 13807 5.643777 AGTTTGCTCGTAACTGCATCTAAAT 59.356 36.000 0.00 0.00 39.07 1.40
8175 13808 5.718649 TTGCTCGTAACTGCATCTAAATC 57.281 39.130 0.00 0.00 39.07 2.17
8176 13809 5.011090 TGCTCGTAACTGCATCTAAATCT 57.989 39.130 0.00 0.00 33.94 2.40
8177 13810 5.419542 TGCTCGTAACTGCATCTAAATCTT 58.580 37.500 0.00 0.00 33.94 2.40
8178 13811 5.874810 TGCTCGTAACTGCATCTAAATCTTT 59.125 36.000 0.00 0.00 33.94 2.52
8179 13812 6.183360 TGCTCGTAACTGCATCTAAATCTTTG 60.183 38.462 0.00 0.00 33.94 2.77
8180 13813 6.106877 TCGTAACTGCATCTAAATCTTTGC 57.893 37.500 0.00 0.00 35.67 3.68
8181 13814 5.064707 TCGTAACTGCATCTAAATCTTTGCC 59.935 40.000 0.00 0.00 34.20 4.52
8182 13815 5.065218 CGTAACTGCATCTAAATCTTTGCCT 59.935 40.000 0.00 0.00 34.20 4.75
8183 13816 4.978083 ACTGCATCTAAATCTTTGCCTG 57.022 40.909 0.00 0.00 34.20 4.85
8184 13817 3.698040 ACTGCATCTAAATCTTTGCCTGG 59.302 43.478 0.00 0.00 34.20 4.45
8185 13818 2.428171 TGCATCTAAATCTTTGCCTGGC 59.572 45.455 12.87 12.87 34.20 4.85
8186 13819 2.692041 GCATCTAAATCTTTGCCTGGCT 59.308 45.455 21.03 0.00 0.00 4.75
8187 13820 3.490419 GCATCTAAATCTTTGCCTGGCTG 60.490 47.826 21.03 10.15 0.00 4.85
8188 13821 2.726821 TCTAAATCTTTGCCTGGCTGG 58.273 47.619 21.03 5.98 39.35 4.85
8189 13822 1.753073 CTAAATCTTTGCCTGGCTGGG 59.247 52.381 21.03 9.39 36.00 4.45
8190 13823 0.114954 AAATCTTTGCCTGGCTGGGA 59.885 50.000 21.03 14.32 36.00 4.37
8191 13824 0.324091 AATCTTTGCCTGGCTGGGAG 60.324 55.000 21.03 11.79 37.50 4.30
8192 13825 1.210204 ATCTTTGCCTGGCTGGGAGA 61.210 55.000 21.03 16.35 37.50 3.71
8193 13826 1.378250 CTTTGCCTGGCTGGGAGAG 60.378 63.158 21.03 10.18 37.50 3.20
8201 13834 3.819188 GCTGGGAGAGCCGAATTG 58.181 61.111 0.00 0.00 42.54 2.32
8202 13835 1.821332 GCTGGGAGAGCCGAATTGG 60.821 63.158 0.00 0.00 42.54 3.16
8211 13844 3.711348 CCGAATTGGCTCTCTCGC 58.289 61.111 0.00 0.00 0.00 5.03
8212 13845 2.233654 CCGAATTGGCTCTCTCGCG 61.234 63.158 0.00 0.00 0.00 5.87
8213 13846 1.226688 CGAATTGGCTCTCTCGCGA 60.227 57.895 9.26 9.26 0.00 5.87
8214 13847 1.475441 CGAATTGGCTCTCTCGCGAC 61.475 60.000 3.71 0.00 0.00 5.19
8215 13848 1.475441 GAATTGGCTCTCTCGCGACG 61.475 60.000 3.71 1.32 0.00 5.12
8216 13849 2.890847 AATTGGCTCTCTCGCGACGG 62.891 60.000 3.71 0.08 0.00 4.79
8219 13852 4.778415 GCTCTCTCGCGACGGCAA 62.778 66.667 3.71 0.00 39.92 4.52
8220 13853 2.126463 CTCTCTCGCGACGGCAAA 60.126 61.111 3.71 0.00 39.92 3.68
8221 13854 2.430244 TCTCTCGCGACGGCAAAC 60.430 61.111 3.71 0.00 39.92 2.93
8222 13855 2.430921 CTCTCGCGACGGCAAACT 60.431 61.111 3.71 0.00 39.92 2.66
8223 13856 1.154093 CTCTCGCGACGGCAAACTA 60.154 57.895 3.71 0.00 39.92 2.24
8224 13857 1.134530 CTCTCGCGACGGCAAACTAG 61.135 60.000 3.71 0.00 39.92 2.57
8225 13858 2.789203 CTCGCGACGGCAAACTAGC 61.789 63.158 3.71 0.00 39.92 3.42
8226 13859 4.191485 CGCGACGGCAAACTAGCG 62.191 66.667 0.00 0.00 41.56 4.26
8227 13860 2.807895 GCGACGGCAAACTAGCGA 60.808 61.111 0.00 0.00 39.62 4.93
8228 13861 2.377310 GCGACGGCAAACTAGCGAA 61.377 57.895 0.00 0.00 39.62 4.70
8229 13862 1.693083 GCGACGGCAAACTAGCGAAT 61.693 55.000 0.00 0.00 39.62 3.34
8230 13863 0.297820 CGACGGCAAACTAGCGAATC 59.702 55.000 0.00 0.00 34.64 2.52
8231 13864 0.651031 GACGGCAAACTAGCGAATCC 59.349 55.000 0.00 0.00 34.64 3.01
8232 13865 0.249398 ACGGCAAACTAGCGAATCCT 59.751 50.000 0.00 0.00 34.64 3.24
8233 13866 0.652592 CGGCAAACTAGCGAATCCTG 59.347 55.000 0.00 0.00 34.64 3.86
8234 13867 0.378610 GGCAAACTAGCGAATCCTGC 59.621 55.000 0.00 0.00 34.64 4.85
8235 13868 0.026803 GCAAACTAGCGAATCCTGCG 59.973 55.000 0.00 0.00 37.44 5.18
8236 13869 1.359848 CAAACTAGCGAATCCTGCGT 58.640 50.000 0.00 0.00 37.44 5.24
8237 13870 1.061131 CAAACTAGCGAATCCTGCGTG 59.939 52.381 0.00 0.00 37.44 5.34
8238 13871 0.530744 AACTAGCGAATCCTGCGTGA 59.469 50.000 0.00 0.00 37.44 4.35
8239 13872 0.101399 ACTAGCGAATCCTGCGTGAG 59.899 55.000 0.00 0.00 37.44 3.51
8240 13873 0.382158 CTAGCGAATCCTGCGTGAGA 59.618 55.000 0.00 0.00 37.44 3.27
8241 13874 1.000827 CTAGCGAATCCTGCGTGAGAT 60.001 52.381 0.00 0.00 37.44 2.75
8242 13875 1.032794 AGCGAATCCTGCGTGAGATA 58.967 50.000 0.00 0.00 37.44 1.98
8243 13876 1.409064 AGCGAATCCTGCGTGAGATAA 59.591 47.619 0.00 0.00 37.44 1.75
8244 13877 1.789464 GCGAATCCTGCGTGAGATAAG 59.211 52.381 0.00 0.00 0.00 1.73
8245 13878 2.799917 GCGAATCCTGCGTGAGATAAGT 60.800 50.000 0.00 0.00 0.00 2.24
8246 13879 3.046390 CGAATCCTGCGTGAGATAAGTC 58.954 50.000 0.00 0.00 0.00 3.01
8247 13880 3.489229 CGAATCCTGCGTGAGATAAGTCA 60.489 47.826 0.00 0.00 0.00 3.41
8248 13881 2.941453 TCCTGCGTGAGATAAGTCAC 57.059 50.000 0.00 0.00 43.01 3.67
8259 13892 7.489894 GTGAGATAAGTCACGTAACTGTAAC 57.510 40.000 0.00 0.00 37.69 2.50
8260 13893 6.525976 GTGAGATAAGTCACGTAACTGTAACC 59.474 42.308 0.00 0.00 37.69 2.85
8261 13894 6.432162 TGAGATAAGTCACGTAACTGTAACCT 59.568 38.462 0.00 0.00 0.00 3.50
8262 13895 6.618811 AGATAAGTCACGTAACTGTAACCTG 58.381 40.000 0.00 0.00 0.00 4.00
8263 13896 4.924305 AAGTCACGTAACTGTAACCTGA 57.076 40.909 0.00 0.00 0.00 3.86
8264 13897 4.500603 AGTCACGTAACTGTAACCTGAG 57.499 45.455 0.00 0.00 0.00 3.35
8265 13898 3.255149 AGTCACGTAACTGTAACCTGAGG 59.745 47.826 0.00 0.00 0.00 3.86
8266 13899 2.029649 TCACGTAACTGTAACCTGAGGC 60.030 50.000 0.00 0.00 0.00 4.70
8267 13900 1.965643 ACGTAACTGTAACCTGAGGCA 59.034 47.619 0.00 0.00 0.00 4.75
8268 13901 2.366266 ACGTAACTGTAACCTGAGGCAA 59.634 45.455 0.00 0.00 0.00 4.52
8269 13902 3.007614 ACGTAACTGTAACCTGAGGCAAT 59.992 43.478 0.00 0.00 0.00 3.56
8270 13903 4.221262 ACGTAACTGTAACCTGAGGCAATA 59.779 41.667 0.00 0.00 0.00 1.90
8271 13904 4.565564 CGTAACTGTAACCTGAGGCAATAC 59.434 45.833 0.00 0.28 0.00 1.89
8272 13905 4.634012 AACTGTAACCTGAGGCAATACA 57.366 40.909 0.00 5.33 0.00 2.29
8273 13906 4.634012 ACTGTAACCTGAGGCAATACAA 57.366 40.909 0.00 0.00 0.00 2.41
8274 13907 4.324267 ACTGTAACCTGAGGCAATACAAC 58.676 43.478 0.00 0.00 0.00 3.32
8275 13908 3.681593 TGTAACCTGAGGCAATACAACC 58.318 45.455 0.00 0.00 0.00 3.77
8276 13909 2.969821 AACCTGAGGCAATACAACCA 57.030 45.000 0.00 0.00 0.00 3.67
8277 13910 2.969821 ACCTGAGGCAATACAACCAA 57.030 45.000 0.00 0.00 0.00 3.67
8278 13911 3.237268 ACCTGAGGCAATACAACCAAA 57.763 42.857 0.00 0.00 0.00 3.28
8279 13912 2.890945 ACCTGAGGCAATACAACCAAAC 59.109 45.455 0.00 0.00 0.00 2.93
8280 13913 2.890311 CCTGAGGCAATACAACCAAACA 59.110 45.455 0.00 0.00 0.00 2.83
8281 13914 3.320541 CCTGAGGCAATACAACCAAACAA 59.679 43.478 0.00 0.00 0.00 2.83
8282 13915 4.298332 CTGAGGCAATACAACCAAACAAC 58.702 43.478 0.00 0.00 0.00 3.32
8283 13916 3.701542 TGAGGCAATACAACCAAACAACA 59.298 39.130 0.00 0.00 0.00 3.33
8284 13917 4.343526 TGAGGCAATACAACCAAACAACAT 59.656 37.500 0.00 0.00 0.00 2.71
8285 13918 4.881920 AGGCAATACAACCAAACAACATC 58.118 39.130 0.00 0.00 0.00 3.06
8286 13919 3.672867 GGCAATACAACCAAACAACATCG 59.327 43.478 0.00 0.00 0.00 3.84
8287 13920 3.121113 GCAATACAACCAAACAACATCGC 59.879 43.478 0.00 0.00 0.00 4.58
8288 13921 4.545610 CAATACAACCAAACAACATCGCT 58.454 39.130 0.00 0.00 0.00 4.93
8289 13922 4.846779 ATACAACCAAACAACATCGCTT 57.153 36.364 0.00 0.00 0.00 4.68
8290 13923 5.950758 ATACAACCAAACAACATCGCTTA 57.049 34.783 0.00 0.00 0.00 3.09
8291 13924 4.223320 ACAACCAAACAACATCGCTTAG 57.777 40.909 0.00 0.00 0.00 2.18
8292 13925 2.979813 CAACCAAACAACATCGCTTAGC 59.020 45.455 0.00 0.00 0.00 3.09
8293 13926 2.504367 ACCAAACAACATCGCTTAGCT 58.496 42.857 1.76 0.00 0.00 3.32
8294 13927 2.484264 ACCAAACAACATCGCTTAGCTC 59.516 45.455 1.76 0.00 0.00 4.09
8295 13928 2.483877 CCAAACAACATCGCTTAGCTCA 59.516 45.455 1.76 0.00 0.00 4.26
8296 13929 3.127548 CCAAACAACATCGCTTAGCTCAT 59.872 43.478 1.76 0.00 0.00 2.90
8297 13930 4.093514 CAAACAACATCGCTTAGCTCATG 58.906 43.478 1.76 7.03 0.00 3.07
8298 13931 2.977914 ACAACATCGCTTAGCTCATGT 58.022 42.857 11.39 11.39 33.25 3.21
8299 13932 2.674852 ACAACATCGCTTAGCTCATGTG 59.325 45.455 16.08 13.00 32.57 3.21
8300 13933 1.945387 ACATCGCTTAGCTCATGTGG 58.055 50.000 15.04 0.00 31.55 4.17
8301 13934 1.224075 CATCGCTTAGCTCATGTGGG 58.776 55.000 1.76 0.00 0.00 4.61
8302 13935 0.533755 ATCGCTTAGCTCATGTGGGC 60.534 55.000 1.76 0.00 0.00 5.36
8303 13936 1.153289 CGCTTAGCTCATGTGGGCT 60.153 57.895 12.62 12.62 41.92 5.19
8304 13937 0.104855 CGCTTAGCTCATGTGGGCTA 59.895 55.000 10.44 10.44 39.65 3.93
8305 13938 1.270518 CGCTTAGCTCATGTGGGCTAT 60.271 52.381 14.84 0.00 40.16 2.97
8306 13939 2.149578 GCTTAGCTCATGTGGGCTATG 58.850 52.381 14.84 16.88 40.16 2.23
8307 13940 2.775890 CTTAGCTCATGTGGGCTATGG 58.224 52.381 14.84 7.91 40.16 2.74
8308 13941 0.397941 TAGCTCATGTGGGCTATGGC 59.602 55.000 10.44 0.00 39.65 4.40
8309 13942 1.152902 GCTCATGTGGGCTATGGCA 60.153 57.895 2.58 0.00 40.87 4.92
8310 13943 1.450531 GCTCATGTGGGCTATGGCAC 61.451 60.000 2.58 0.00 43.28 5.01
8331 13964 2.892784 AGCGGGCTAGCTTAACTTAG 57.107 50.000 15.72 0.00 46.80 2.18
8332 13965 1.202545 AGCGGGCTAGCTTAACTTAGC 60.203 52.381 15.72 8.60 46.80 3.09
8337 13970 2.214347 GCTAGCTTAACTTAGCCTGGC 58.786 52.381 11.65 11.65 42.20 4.85
8338 13971 2.158885 GCTAGCTTAACTTAGCCTGGCT 60.159 50.000 26.52 26.52 42.20 4.75
8339 13972 3.069729 GCTAGCTTAACTTAGCCTGGCTA 59.930 47.826 24.10 24.10 42.20 3.93
8340 13973 3.828875 AGCTTAACTTAGCCTGGCTAG 57.171 47.619 26.04 21.38 42.34 3.42
8341 13974 7.750122 GCTAGCTTAACTTAGCCTGGCTAGG 62.750 52.000 29.78 29.78 44.27 3.02
8344 13977 3.711849 ACTTAGCCTGGCTAGGTGA 57.288 52.632 34.28 17.90 46.83 4.02
8345 13978 1.490574 ACTTAGCCTGGCTAGGTGAG 58.509 55.000 34.28 26.41 46.83 3.51
8346 13979 0.755686 CTTAGCCTGGCTAGGTGAGG 59.244 60.000 26.04 5.84 46.41 3.86
8355 13988 2.629336 GCTAGGTGAGGCTAGCAAAT 57.371 50.000 18.24 0.89 45.55 2.32
8356 13989 2.216898 GCTAGGTGAGGCTAGCAAATG 58.783 52.381 18.24 0.00 45.55 2.32
8357 13990 2.158900 GCTAGGTGAGGCTAGCAAATGA 60.159 50.000 18.24 0.00 45.55 2.57
8358 13991 3.495806 GCTAGGTGAGGCTAGCAAATGAT 60.496 47.826 18.24 0.35 45.55 2.45
8359 13992 3.205784 AGGTGAGGCTAGCAAATGATC 57.794 47.619 18.24 4.86 0.00 2.92
8360 13993 2.158696 AGGTGAGGCTAGCAAATGATCC 60.159 50.000 18.24 8.93 0.00 3.36
8361 13994 2.421952 GGTGAGGCTAGCAAATGATCCA 60.422 50.000 18.24 0.00 0.00 3.41
8362 13995 3.282021 GTGAGGCTAGCAAATGATCCAA 58.718 45.455 18.24 0.00 0.00 3.53
8363 13996 3.696051 GTGAGGCTAGCAAATGATCCAAA 59.304 43.478 18.24 0.00 0.00 3.28
8364 13997 3.696051 TGAGGCTAGCAAATGATCCAAAC 59.304 43.478 18.24 0.00 0.00 2.93
8365 13998 3.696051 GAGGCTAGCAAATGATCCAAACA 59.304 43.478 18.24 0.00 0.00 2.83
8366 13999 3.698040 AGGCTAGCAAATGATCCAAACAG 59.302 43.478 18.24 0.00 0.00 3.16
8367 14000 3.696051 GGCTAGCAAATGATCCAAACAGA 59.304 43.478 18.24 0.00 0.00 3.41
8368 14001 4.439289 GGCTAGCAAATGATCCAAACAGAC 60.439 45.833 18.24 0.00 0.00 3.51
8369 14002 4.439289 GCTAGCAAATGATCCAAACAGACC 60.439 45.833 10.63 0.00 0.00 3.85
8370 14003 2.827921 AGCAAATGATCCAAACAGACCC 59.172 45.455 0.00 0.00 0.00 4.46
8371 14004 2.827921 GCAAATGATCCAAACAGACCCT 59.172 45.455 0.00 0.00 0.00 4.34
8372 14005 3.259123 GCAAATGATCCAAACAGACCCTT 59.741 43.478 0.00 0.00 0.00 3.95
8373 14006 4.813027 CAAATGATCCAAACAGACCCTTG 58.187 43.478 0.00 0.00 0.00 3.61
8421 14054 3.369892 CGGTGAGAGGAAAATGAGATGGT 60.370 47.826 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 5.472820 CAGCTGGAGTTTTTGATTCTCTCTT 59.527 40.000 5.57 0.00 0.00 2.85
133 138 4.104831 AGGGAAGTGCTACTAAATCAGGT 58.895 43.478 0.00 0.00 0.00 4.00
184 189 3.193267 AGCATGCGTACACCATGATTTTT 59.807 39.130 21.32 4.44 41.97 1.94
268 275 2.494918 CACGGCTAAGGAGGGACG 59.505 66.667 0.00 0.00 40.16 4.79
402 411 2.259505 GCTGACGGCCGTATATAGAC 57.740 55.000 34.36 17.77 34.27 2.59
447 456 2.705220 CGTGTGATGCTCCATGCG 59.295 61.111 0.00 0.00 46.63 4.73
472 481 2.942804 TGCCACTTCAATTTCAGTCCA 58.057 42.857 0.00 0.00 0.00 4.02
482 491 1.739049 CGCCCTTTTGCCACTTCAA 59.261 52.632 0.00 0.00 0.00 2.69
506 515 6.373186 TCACTTATCACGTCTTGATCGTAT 57.627 37.500 0.00 0.00 41.53 3.06
514 523 4.021894 AGAGTGCTTCACTTATCACGTCTT 60.022 41.667 0.66 0.00 45.44 3.01
517 526 3.944055 AGAGTGCTTCACTTATCACGT 57.056 42.857 0.66 0.00 45.44 4.49
975 2892 2.892425 GGCAAGCAGGATCGACCG 60.892 66.667 0.00 0.00 44.74 4.79
1191 3111 0.389025 CCTTTTCACCTGTTGTGGGC 59.611 55.000 0.00 0.00 45.48 5.36
1192 3112 1.039856 CCCTTTTCACCTGTTGTGGG 58.960 55.000 0.00 0.00 45.48 4.61
1194 3114 0.389025 GGCCCTTTTCACCTGTTGTG 59.611 55.000 0.00 0.00 46.88 3.33
1195 3115 0.032615 TGGCCCTTTTCACCTGTTGT 60.033 50.000 0.00 0.00 0.00 3.32
1197 3117 1.106944 CGTGGCCCTTTTCACCTGTT 61.107 55.000 0.00 0.00 0.00 3.16
1384 3315 3.895704 AAATGTGTAAGACCCACCCTT 57.104 42.857 0.00 0.00 31.71 3.95
1467 3427 1.213537 GTACGTGGCGGACTTGCTA 59.786 57.895 0.00 0.00 37.76 3.49
1543 3599 7.886405 AAACGTCTTACATTTAGGAAGAGAC 57.114 36.000 0.00 0.00 30.04 3.36
1614 4435 7.991084 TCCTTATCTCTTAATGATTGCATGG 57.009 36.000 0.00 0.00 34.26 3.66
1815 7075 0.537371 AGTGCGACCCTTTTTCCTGG 60.537 55.000 0.00 0.00 0.00 4.45
1988 7253 8.506168 TCCTAGCAGAGTACCAAAATAAAATG 57.494 34.615 0.00 0.00 0.00 2.32
1997 7262 5.451937 CGATGAAATCCTAGCAGAGTACCAA 60.452 44.000 0.00 0.00 41.39 3.67
2468 7733 2.091055 TCCAAACACAATTTCTCCCCCA 60.091 45.455 0.00 0.00 0.00 4.96
3115 8392 9.626045 CCCTTTAAGTGTATTCATCAAAAGTTC 57.374 33.333 0.00 0.00 0.00 3.01
3128 8405 7.336176 GCTTTAGTGCTTACCCTTTAAGTGTAT 59.664 37.037 0.00 0.00 0.00 2.29
3136 8413 4.893524 AGTTTGCTTTAGTGCTTACCCTTT 59.106 37.500 0.00 0.00 0.00 3.11
3161 8438 5.874810 TCGGGAGTTTATATGCATTATGCTC 59.125 40.000 18.44 6.94 45.31 4.26
3270 8547 6.757010 GTGTTATGATTCAAGTGGTCTATCGT 59.243 38.462 0.00 0.00 0.00 3.73
3488 8765 2.390225 AGATCTAGGATCCGTTGCCT 57.610 50.000 5.98 0.00 38.31 4.75
3500 8777 8.502387 GCAAACCTCATTTAGCAATAGATCTAG 58.498 37.037 8.70 0.00 0.00 2.43
3711 8988 4.399483 ACCTGTAAACAGTAGGAGAGGA 57.601 45.455 9.17 0.00 42.27 3.71
3739 9016 5.098663 TCTATCCTACCCCAACTTGTTTCT 58.901 41.667 0.00 0.00 0.00 2.52
3740 9017 5.429130 CTCTATCCTACCCCAACTTGTTTC 58.571 45.833 0.00 0.00 0.00 2.78
3758 9035 6.015010 CGAGATCTTATGGGTTTCACCTCTAT 60.015 42.308 0.00 0.00 38.64 1.98
3826 9103 1.367346 TTAGCCATGGACAAGGGTGA 58.633 50.000 18.40 0.00 36.86 4.02
4259 9538 3.207265 TGAAGTGGCACAAAGCTTCTA 57.793 42.857 21.41 3.06 44.16 2.10
4679 9982 7.899178 ACGATAATGTTGTGATAAGTGTTCA 57.101 32.000 0.00 0.00 0.00 3.18
5092 10395 1.889530 GCACGGTGCTCTTAGACCCT 61.890 60.000 25.08 0.00 40.96 4.34
5095 10398 0.319555 TGTGCACGGTGCTCTTAGAC 60.320 55.000 30.81 20.40 45.31 2.59
5704 11013 8.739972 ACCAACATTTCTACCAACAAGATATTC 58.260 33.333 0.00 0.00 0.00 1.75
5815 11124 3.627577 CGAATACCAAAGCTGCCATTACT 59.372 43.478 0.00 0.00 0.00 2.24
7560 13184 1.227205 CTCTGCAGCTCATCCGGTC 60.227 63.158 9.47 0.00 0.00 4.79
7958 13589 1.001120 TGCATCCACCCTCTCGGTA 59.999 57.895 0.00 0.00 46.14 4.02
8057 13690 0.879090 CCTTAGAACCAAACGCACCC 59.121 55.000 0.00 0.00 0.00 4.61
8058 13691 0.240145 GCCTTAGAACCAAACGCACC 59.760 55.000 0.00 0.00 0.00 5.01
8059 13692 0.948678 TGCCTTAGAACCAAACGCAC 59.051 50.000 0.00 0.00 0.00 5.34
8060 13693 1.606668 CTTGCCTTAGAACCAAACGCA 59.393 47.619 0.00 0.00 0.00 5.24
8061 13694 1.068541 CCTTGCCTTAGAACCAAACGC 60.069 52.381 0.00 0.00 0.00 4.84
8062 13695 2.225727 GTCCTTGCCTTAGAACCAAACG 59.774 50.000 0.00 0.00 0.00 3.60
8063 13696 3.219281 TGTCCTTGCCTTAGAACCAAAC 58.781 45.455 0.00 0.00 0.00 2.93
8064 13697 3.117663 ACTGTCCTTGCCTTAGAACCAAA 60.118 43.478 0.00 0.00 0.00 3.28
8065 13698 2.441750 ACTGTCCTTGCCTTAGAACCAA 59.558 45.455 0.00 0.00 0.00 3.67
8066 13699 2.054799 ACTGTCCTTGCCTTAGAACCA 58.945 47.619 0.00 0.00 0.00 3.67
8067 13700 2.861147 ACTGTCCTTGCCTTAGAACC 57.139 50.000 0.00 0.00 0.00 3.62
8068 13701 5.334957 GCTAAAACTGTCCTTGCCTTAGAAC 60.335 44.000 0.00 0.00 0.00 3.01
8069 13702 4.760204 GCTAAAACTGTCCTTGCCTTAGAA 59.240 41.667 0.00 0.00 0.00 2.10
8070 13703 4.324267 GCTAAAACTGTCCTTGCCTTAGA 58.676 43.478 0.00 0.00 0.00 2.10
8071 13704 3.440522 GGCTAAAACTGTCCTTGCCTTAG 59.559 47.826 0.00 0.00 36.32 2.18
8072 13705 3.073946 AGGCTAAAACTGTCCTTGCCTTA 59.926 43.478 9.99 0.00 45.81 2.69
8073 13706 2.158460 AGGCTAAAACTGTCCTTGCCTT 60.158 45.455 9.99 0.00 45.81 4.35
8074 13707 1.425448 AGGCTAAAACTGTCCTTGCCT 59.575 47.619 9.99 9.99 43.61 4.75
8075 13708 1.911057 AGGCTAAAACTGTCCTTGCC 58.089 50.000 6.48 6.48 39.19 4.52
8076 13709 3.288809 CAAGGCTAAAACTGTCCTTGC 57.711 47.619 10.98 0.93 45.95 4.01
8078 13711 2.158460 AGGCAAGGCTAAAACTGTCCTT 60.158 45.455 0.00 0.00 39.35 3.36
8079 13712 1.425448 AGGCAAGGCTAAAACTGTCCT 59.575 47.619 0.00 0.00 0.00 3.85
8080 13713 1.911057 AGGCAAGGCTAAAACTGTCC 58.089 50.000 0.00 0.00 0.00 4.02
8081 13714 2.420372 GCTAGGCAAGGCTAAAACTGTC 59.580 50.000 4.86 0.00 0.00 3.51
8082 13715 2.224769 TGCTAGGCAAGGCTAAAACTGT 60.225 45.455 4.86 0.00 34.76 3.55
8083 13716 2.436417 TGCTAGGCAAGGCTAAAACTG 58.564 47.619 4.86 0.00 34.76 3.16
8084 13717 2.879103 TGCTAGGCAAGGCTAAAACT 57.121 45.000 4.86 0.00 34.76 2.66
8094 13727 1.140852 ACGCATATCCTTGCTAGGCAA 59.859 47.619 9.60 4.87 46.80 4.52
8095 13728 0.758734 ACGCATATCCTTGCTAGGCA 59.241 50.000 9.60 0.00 41.69 4.75
8096 13729 1.884235 AACGCATATCCTTGCTAGGC 58.116 50.000 9.60 0.00 41.69 3.93
8097 13730 2.549754 CCAAACGCATATCCTTGCTAGG 59.450 50.000 8.03 8.03 43.46 3.02
8098 13731 3.206150 ACCAAACGCATATCCTTGCTAG 58.794 45.455 0.00 0.00 40.54 3.42
8099 13732 3.275617 ACCAAACGCATATCCTTGCTA 57.724 42.857 0.00 0.00 40.54 3.49
8100 13733 2.128771 ACCAAACGCATATCCTTGCT 57.871 45.000 0.00 0.00 40.54 3.91
8101 13734 3.202906 TCTACCAAACGCATATCCTTGC 58.797 45.455 0.00 0.00 39.29 4.01
8102 13735 4.442706 ACTCTACCAAACGCATATCCTTG 58.557 43.478 0.00 0.00 0.00 3.61
8103 13736 4.755266 ACTCTACCAAACGCATATCCTT 57.245 40.909 0.00 0.00 0.00 3.36
8104 13737 5.864418 TTACTCTACCAAACGCATATCCT 57.136 39.130 0.00 0.00 0.00 3.24
8109 13742 9.555727 AACAATATATTACTCTACCAAACGCAT 57.444 29.630 0.00 0.00 0.00 4.73
8110 13743 8.951787 AACAATATATTACTCTACCAAACGCA 57.048 30.769 0.00 0.00 0.00 5.24
8111 13744 9.646336 CAAACAATATATTACTCTACCAAACGC 57.354 33.333 0.00 0.00 0.00 4.84
8112 13745 9.646336 GCAAACAATATATTACTCTACCAAACG 57.354 33.333 0.00 0.00 0.00 3.60
8125 13758 9.603921 CTTCCATCCAAAAGCAAACAATATATT 57.396 29.630 0.00 0.00 0.00 1.28
8126 13759 8.761689 ACTTCCATCCAAAAGCAAACAATATAT 58.238 29.630 0.00 0.00 0.00 0.86
8127 13760 8.133024 ACTTCCATCCAAAAGCAAACAATATA 57.867 30.769 0.00 0.00 0.00 0.86
8128 13761 7.008021 ACTTCCATCCAAAAGCAAACAATAT 57.992 32.000 0.00 0.00 0.00 1.28
8129 13762 6.418057 ACTTCCATCCAAAAGCAAACAATA 57.582 33.333 0.00 0.00 0.00 1.90
8130 13763 5.294734 ACTTCCATCCAAAAGCAAACAAT 57.705 34.783 0.00 0.00 0.00 2.71
8131 13764 4.751767 ACTTCCATCCAAAAGCAAACAA 57.248 36.364 0.00 0.00 0.00 2.83
8132 13765 4.751767 AACTTCCATCCAAAAGCAAACA 57.248 36.364 0.00 0.00 0.00 2.83
8133 13766 4.260743 GCAAACTTCCATCCAAAAGCAAAC 60.261 41.667 0.00 0.00 0.00 2.93
8134 13767 3.876320 GCAAACTTCCATCCAAAAGCAAA 59.124 39.130 0.00 0.00 0.00 3.68
8135 13768 3.134442 AGCAAACTTCCATCCAAAAGCAA 59.866 39.130 0.00 0.00 0.00 3.91
8136 13769 2.699846 AGCAAACTTCCATCCAAAAGCA 59.300 40.909 0.00 0.00 0.00 3.91
8137 13770 3.320626 GAGCAAACTTCCATCCAAAAGC 58.679 45.455 0.00 0.00 0.00 3.51
8138 13771 3.004734 ACGAGCAAACTTCCATCCAAAAG 59.995 43.478 0.00 0.00 0.00 2.27
8139 13772 2.955660 ACGAGCAAACTTCCATCCAAAA 59.044 40.909 0.00 0.00 0.00 2.44
8140 13773 2.582052 ACGAGCAAACTTCCATCCAAA 58.418 42.857 0.00 0.00 0.00 3.28
8141 13774 2.270352 ACGAGCAAACTTCCATCCAA 57.730 45.000 0.00 0.00 0.00 3.53
8142 13775 3.071479 GTTACGAGCAAACTTCCATCCA 58.929 45.455 0.00 0.00 0.00 3.41
8143 13776 3.125316 CAGTTACGAGCAAACTTCCATCC 59.875 47.826 0.00 0.00 34.99 3.51
8144 13777 3.424962 GCAGTTACGAGCAAACTTCCATC 60.425 47.826 0.00 0.00 34.99 3.51
8145 13778 2.484264 GCAGTTACGAGCAAACTTCCAT 59.516 45.455 0.00 0.00 34.99 3.41
8146 13779 1.871039 GCAGTTACGAGCAAACTTCCA 59.129 47.619 0.00 0.00 34.99 3.53
8147 13780 1.871039 TGCAGTTACGAGCAAACTTCC 59.129 47.619 3.30 0.00 37.90 3.46
8148 13781 3.433615 AGATGCAGTTACGAGCAAACTTC 59.566 43.478 9.26 3.61 44.88 3.01
8149 13782 3.403038 AGATGCAGTTACGAGCAAACTT 58.597 40.909 9.26 0.00 44.88 2.66
8150 13783 3.045601 AGATGCAGTTACGAGCAAACT 57.954 42.857 9.26 8.97 44.88 2.66
8151 13784 4.921470 TTAGATGCAGTTACGAGCAAAC 57.079 40.909 9.26 7.23 44.88 2.93
8152 13785 5.874810 AGATTTAGATGCAGTTACGAGCAAA 59.125 36.000 9.26 1.08 44.88 3.68
8153 13786 5.419542 AGATTTAGATGCAGTTACGAGCAA 58.580 37.500 9.26 0.00 44.88 3.91
8154 13787 5.011090 AGATTTAGATGCAGTTACGAGCA 57.989 39.130 7.83 7.83 45.92 4.26
8155 13788 5.975410 AAGATTTAGATGCAGTTACGAGC 57.025 39.130 0.00 0.00 0.00 5.03
8156 13789 6.188175 GCAAAGATTTAGATGCAGTTACGAG 58.812 40.000 0.00 0.00 38.63 4.18
8157 13790 5.064707 GGCAAAGATTTAGATGCAGTTACGA 59.935 40.000 0.00 0.00 40.51 3.43
8158 13791 5.065218 AGGCAAAGATTTAGATGCAGTTACG 59.935 40.000 0.00 0.00 40.51 3.18
8159 13792 6.261118 CAGGCAAAGATTTAGATGCAGTTAC 58.739 40.000 0.00 0.00 40.51 2.50
8160 13793 5.357878 CCAGGCAAAGATTTAGATGCAGTTA 59.642 40.000 0.00 0.00 40.51 2.24
8161 13794 4.159135 CCAGGCAAAGATTTAGATGCAGTT 59.841 41.667 0.00 0.00 40.51 3.16
8162 13795 3.698040 CCAGGCAAAGATTTAGATGCAGT 59.302 43.478 0.00 0.00 40.51 4.40
8163 13796 3.490419 GCCAGGCAAAGATTTAGATGCAG 60.490 47.826 6.55 0.00 40.51 4.41
8164 13797 2.428171 GCCAGGCAAAGATTTAGATGCA 59.572 45.455 6.55 0.00 40.51 3.96
8165 13798 2.692041 AGCCAGGCAAAGATTTAGATGC 59.308 45.455 15.80 0.00 38.06 3.91
8166 13799 3.067742 CCAGCCAGGCAAAGATTTAGATG 59.932 47.826 15.80 0.00 0.00 2.90
8167 13800 3.294214 CCAGCCAGGCAAAGATTTAGAT 58.706 45.455 15.80 0.00 0.00 1.98
8168 13801 2.621407 CCCAGCCAGGCAAAGATTTAGA 60.621 50.000 15.80 0.00 35.39 2.10
8169 13802 1.753073 CCCAGCCAGGCAAAGATTTAG 59.247 52.381 15.80 0.00 35.39 1.85
8170 13803 1.357420 TCCCAGCCAGGCAAAGATTTA 59.643 47.619 15.80 0.00 35.39 1.40
8171 13804 0.114954 TCCCAGCCAGGCAAAGATTT 59.885 50.000 15.80 0.00 35.39 2.17
8172 13805 0.324091 CTCCCAGCCAGGCAAAGATT 60.324 55.000 15.80 0.00 35.39 2.40
8173 13806 1.210204 TCTCCCAGCCAGGCAAAGAT 61.210 55.000 15.80 0.00 35.39 2.40
8174 13807 1.845627 CTCTCCCAGCCAGGCAAAGA 61.846 60.000 15.80 9.35 35.39 2.52
8175 13808 1.378250 CTCTCCCAGCCAGGCAAAG 60.378 63.158 15.80 5.13 35.39 2.77
8176 13809 2.759114 CTCTCCCAGCCAGGCAAA 59.241 61.111 15.80 0.00 35.39 3.68
8177 13810 4.039092 GCTCTCCCAGCCAGGCAA 62.039 66.667 15.80 0.00 43.17 4.52
8185 13818 4.547859 CCAATTCGGCTCTCCCAG 57.452 61.111 0.00 0.00 0.00 4.45
8194 13827 2.233654 CGCGAGAGAGCCAATTCGG 61.234 63.158 0.00 0.00 33.89 4.30
8195 13828 1.226688 TCGCGAGAGAGCCAATTCG 60.227 57.895 3.71 0.00 36.23 3.34
8196 13829 1.475441 CGTCGCGAGAGAGCCAATTC 61.475 60.000 10.24 0.00 43.49 2.17
8197 13830 1.517257 CGTCGCGAGAGAGCCAATT 60.517 57.895 10.24 0.00 43.49 2.32
8198 13831 2.103143 CGTCGCGAGAGAGCCAAT 59.897 61.111 10.24 0.00 43.49 3.16
8199 13832 4.116328 CCGTCGCGAGAGAGCCAA 62.116 66.667 10.24 0.00 43.49 4.52
8202 13835 4.778415 TTGCCGTCGCGAGAGAGC 62.778 66.667 10.24 11.01 43.49 4.09
8203 13836 2.126463 TTTGCCGTCGCGAGAGAG 60.126 61.111 10.24 0.81 43.49 3.20
8204 13837 1.579964 TAGTTTGCCGTCGCGAGAGA 61.580 55.000 10.24 0.00 43.49 3.10
8205 13838 1.134530 CTAGTTTGCCGTCGCGAGAG 61.135 60.000 10.24 6.82 43.49 3.20
8206 13839 1.154093 CTAGTTTGCCGTCGCGAGA 60.154 57.895 10.24 0.00 38.08 4.04
8207 13840 2.789203 GCTAGTTTGCCGTCGCGAG 61.789 63.158 10.24 0.00 38.08 5.03
8208 13841 2.807895 GCTAGTTTGCCGTCGCGA 60.808 61.111 3.71 3.71 38.08 5.87
8209 13842 4.191485 CGCTAGTTTGCCGTCGCG 62.191 66.667 0.00 0.00 38.08 5.87
8210 13843 1.693083 ATTCGCTAGTTTGCCGTCGC 61.693 55.000 0.00 0.00 0.00 5.19
8211 13844 0.297820 GATTCGCTAGTTTGCCGTCG 59.702 55.000 0.00 0.00 0.00 5.12
8212 13845 0.651031 GGATTCGCTAGTTTGCCGTC 59.349 55.000 0.00 0.00 0.00 4.79
8213 13846 0.249398 AGGATTCGCTAGTTTGCCGT 59.751 50.000 0.00 0.00 0.00 5.68
8214 13847 0.652592 CAGGATTCGCTAGTTTGCCG 59.347 55.000 0.00 0.00 0.00 5.69
8215 13848 0.378610 GCAGGATTCGCTAGTTTGCC 59.621 55.000 0.00 0.00 0.00 4.52
8216 13849 0.026803 CGCAGGATTCGCTAGTTTGC 59.973 55.000 0.00 0.00 0.00 3.68
8217 13850 1.061131 CACGCAGGATTCGCTAGTTTG 59.939 52.381 0.00 0.00 0.00 2.93
8218 13851 1.067142 TCACGCAGGATTCGCTAGTTT 60.067 47.619 0.00 0.00 0.00 2.66
8219 13852 0.530744 TCACGCAGGATTCGCTAGTT 59.469 50.000 0.00 0.00 0.00 2.24
8220 13853 0.101399 CTCACGCAGGATTCGCTAGT 59.899 55.000 0.00 0.00 0.00 2.57
8221 13854 0.382158 TCTCACGCAGGATTCGCTAG 59.618 55.000 0.00 0.00 0.00 3.42
8222 13855 1.032794 ATCTCACGCAGGATTCGCTA 58.967 50.000 0.00 0.00 0.00 4.26
8223 13856 1.032794 TATCTCACGCAGGATTCGCT 58.967 50.000 0.00 0.00 0.00 4.93
8224 13857 1.789464 CTTATCTCACGCAGGATTCGC 59.211 52.381 0.00 0.00 0.00 4.70
8225 13858 3.046390 GACTTATCTCACGCAGGATTCG 58.954 50.000 0.00 0.00 0.00 3.34
8226 13859 3.799420 GTGACTTATCTCACGCAGGATTC 59.201 47.826 0.00 0.00 31.61 2.52
8227 13860 3.786635 GTGACTTATCTCACGCAGGATT 58.213 45.455 0.00 0.00 31.61 3.01
8228 13861 3.444703 GTGACTTATCTCACGCAGGAT 57.555 47.619 0.00 0.00 31.61 3.24
8229 13862 2.941453 GTGACTTATCTCACGCAGGA 57.059 50.000 0.00 0.00 31.61 3.86
8235 13868 6.525976 GGTTACAGTTACGTGACTTATCTCAC 59.474 42.308 10.72 2.46 37.75 3.51
8236 13869 6.432162 AGGTTACAGTTACGTGACTTATCTCA 59.568 38.462 10.72 0.00 0.00 3.27
8237 13870 6.746364 CAGGTTACAGTTACGTGACTTATCTC 59.254 42.308 10.72 1.50 34.27 2.75
8238 13871 6.432162 TCAGGTTACAGTTACGTGACTTATCT 59.568 38.462 10.72 2.40 36.00 1.98
8239 13872 6.615088 TCAGGTTACAGTTACGTGACTTATC 58.385 40.000 10.72 6.31 36.00 1.75
8240 13873 6.349944 CCTCAGGTTACAGTTACGTGACTTAT 60.350 42.308 10.72 4.81 36.00 1.73
8241 13874 5.048504 CCTCAGGTTACAGTTACGTGACTTA 60.049 44.000 10.72 4.53 36.00 2.24
8242 13875 4.261909 CCTCAGGTTACAGTTACGTGACTT 60.262 45.833 10.72 5.46 36.00 3.01
8243 13876 3.255149 CCTCAGGTTACAGTTACGTGACT 59.745 47.826 7.24 7.24 36.00 3.41
8244 13877 3.572584 CCTCAGGTTACAGTTACGTGAC 58.427 50.000 10.30 1.53 36.00 3.67
8245 13878 2.029649 GCCTCAGGTTACAGTTACGTGA 60.030 50.000 13.02 13.02 37.88 4.35
8246 13879 2.288579 TGCCTCAGGTTACAGTTACGTG 60.289 50.000 0.00 6.13 33.82 4.49
8247 13880 1.965643 TGCCTCAGGTTACAGTTACGT 59.034 47.619 0.00 0.00 0.00 3.57
8248 13881 2.736144 TGCCTCAGGTTACAGTTACG 57.264 50.000 0.00 0.00 0.00 3.18
8249 13882 5.484715 TGTATTGCCTCAGGTTACAGTTAC 58.515 41.667 0.00 0.00 0.00 2.50
8250 13883 5.748670 TGTATTGCCTCAGGTTACAGTTA 57.251 39.130 0.00 0.00 0.00 2.24
8251 13884 4.634012 TGTATTGCCTCAGGTTACAGTT 57.366 40.909 0.00 0.00 0.00 3.16
8252 13885 4.324267 GTTGTATTGCCTCAGGTTACAGT 58.676 43.478 0.00 0.00 0.00 3.55
8253 13886 3.689649 GGTTGTATTGCCTCAGGTTACAG 59.310 47.826 0.00 0.00 0.00 2.74
8254 13887 3.073209 TGGTTGTATTGCCTCAGGTTACA 59.927 43.478 0.00 0.00 0.00 2.41
8255 13888 3.681593 TGGTTGTATTGCCTCAGGTTAC 58.318 45.455 0.00 0.00 0.00 2.50
8256 13889 4.374689 TTGGTTGTATTGCCTCAGGTTA 57.625 40.909 0.00 0.00 0.00 2.85
8257 13890 2.969821 TGGTTGTATTGCCTCAGGTT 57.030 45.000 0.00 0.00 0.00 3.50
8258 13891 2.890945 GTTTGGTTGTATTGCCTCAGGT 59.109 45.455 0.00 0.00 0.00 4.00
8259 13892 2.890311 TGTTTGGTTGTATTGCCTCAGG 59.110 45.455 0.00 0.00 0.00 3.86
8260 13893 4.202101 TGTTGTTTGGTTGTATTGCCTCAG 60.202 41.667 0.00 0.00 0.00 3.35
8261 13894 3.701542 TGTTGTTTGGTTGTATTGCCTCA 59.298 39.130 0.00 0.00 0.00 3.86
8262 13895 4.314740 TGTTGTTTGGTTGTATTGCCTC 57.685 40.909 0.00 0.00 0.00 4.70
8263 13896 4.558496 CGATGTTGTTTGGTTGTATTGCCT 60.558 41.667 0.00 0.00 0.00 4.75
8264 13897 3.672867 CGATGTTGTTTGGTTGTATTGCC 59.327 43.478 0.00 0.00 0.00 4.52
8265 13898 3.121113 GCGATGTTGTTTGGTTGTATTGC 59.879 43.478 0.00 0.00 0.00 3.56
8266 13899 4.545610 AGCGATGTTGTTTGGTTGTATTG 58.454 39.130 0.00 0.00 0.00 1.90
8267 13900 4.846779 AGCGATGTTGTTTGGTTGTATT 57.153 36.364 0.00 0.00 0.00 1.89
8268 13901 4.846779 AAGCGATGTTGTTTGGTTGTAT 57.153 36.364 0.00 0.00 0.00 2.29
8269 13902 4.319911 GCTAAGCGATGTTGTTTGGTTGTA 60.320 41.667 0.00 0.00 0.00 2.41
8270 13903 3.550030 GCTAAGCGATGTTGTTTGGTTGT 60.550 43.478 0.00 0.00 0.00 3.32
8271 13904 2.979813 GCTAAGCGATGTTGTTTGGTTG 59.020 45.455 0.00 0.00 0.00 3.77
8272 13905 2.884639 AGCTAAGCGATGTTGTTTGGTT 59.115 40.909 0.00 0.00 0.00 3.67
8273 13906 2.484264 GAGCTAAGCGATGTTGTTTGGT 59.516 45.455 0.00 0.00 0.00 3.67
8274 13907 2.483877 TGAGCTAAGCGATGTTGTTTGG 59.516 45.455 0.00 0.00 0.00 3.28
8275 13908 3.811722 TGAGCTAAGCGATGTTGTTTG 57.188 42.857 0.00 0.00 0.00 2.93
8276 13909 3.753272 ACATGAGCTAAGCGATGTTGTTT 59.247 39.130 0.00 0.00 34.51 2.83
8277 13910 3.125829 CACATGAGCTAAGCGATGTTGTT 59.874 43.478 0.00 0.00 35.45 2.83
8278 13911 2.674852 CACATGAGCTAAGCGATGTTGT 59.325 45.455 0.00 0.00 35.45 3.32
8279 13912 2.031314 CCACATGAGCTAAGCGATGTTG 59.969 50.000 0.00 0.00 35.45 3.33
8280 13913 2.283298 CCACATGAGCTAAGCGATGTT 58.717 47.619 0.00 0.00 35.45 2.71
8281 13914 1.473965 CCCACATGAGCTAAGCGATGT 60.474 52.381 0.00 0.00 37.12 3.06
8282 13915 1.224075 CCCACATGAGCTAAGCGATG 58.776 55.000 0.00 0.00 32.30 3.84
8283 13916 0.533755 GCCCACATGAGCTAAGCGAT 60.534 55.000 0.00 0.00 0.00 4.58
8284 13917 1.153369 GCCCACATGAGCTAAGCGA 60.153 57.895 0.00 0.00 0.00 4.93
8285 13918 0.104855 TAGCCCACATGAGCTAAGCG 59.895 55.000 0.00 0.00 38.61 4.68
8286 13919 2.149578 CATAGCCCACATGAGCTAAGC 58.850 52.381 16.68 4.50 44.32 3.09
8287 13920 2.775890 CCATAGCCCACATGAGCTAAG 58.224 52.381 16.68 13.41 44.32 2.18
8288 13921 1.202806 GCCATAGCCCACATGAGCTAA 60.203 52.381 16.68 0.00 44.32 3.09
8289 13922 0.397941 GCCATAGCCCACATGAGCTA 59.602 55.000 15.60 15.60 45.17 3.32
8290 13923 1.150081 GCCATAGCCCACATGAGCT 59.850 57.895 0.00 7.31 43.20 4.09
8291 13924 1.152902 TGCCATAGCCCACATGAGC 60.153 57.895 0.00 0.00 38.69 4.26
8292 13925 0.107066 TGTGCCATAGCCCACATGAG 60.107 55.000 0.00 0.00 37.07 2.90
8293 13926 0.330941 TTGTGCCATAGCCCACATGA 59.669 50.000 0.00 0.00 41.16 3.07
8294 13927 0.742505 CTTGTGCCATAGCCCACATG 59.257 55.000 0.00 0.00 41.16 3.21
8295 13928 1.039233 GCTTGTGCCATAGCCCACAT 61.039 55.000 0.00 0.00 41.16 3.21
8296 13929 1.678635 GCTTGTGCCATAGCCCACA 60.679 57.895 0.00 0.00 39.95 4.17
8297 13930 2.764314 CGCTTGTGCCATAGCCCAC 61.764 63.158 0.00 0.00 38.69 4.61
8298 13931 2.438254 CGCTTGTGCCATAGCCCA 60.438 61.111 0.00 0.00 38.69 5.36
8299 13932 3.211963 CCGCTTGTGCCATAGCCC 61.212 66.667 0.00 0.00 38.69 5.19
8300 13933 3.211963 CCCGCTTGTGCCATAGCC 61.212 66.667 0.00 0.00 38.69 3.93
8301 13934 2.940890 TAGCCCGCTTGTGCCATAGC 62.941 60.000 0.00 0.00 40.48 2.97
8302 13935 0.882042 CTAGCCCGCTTGTGCCATAG 60.882 60.000 0.00 0.00 35.36 2.23
8303 13936 1.146041 CTAGCCCGCTTGTGCCATA 59.854 57.895 0.00 0.00 35.36 2.74
8304 13937 2.124570 CTAGCCCGCTTGTGCCAT 60.125 61.111 0.00 0.00 35.36 4.40
8306 13939 4.785453 AGCTAGCCCGCTTGTGCC 62.785 66.667 12.13 0.00 36.74 5.01
8312 13945 1.202545 GCTAAGTTAAGCTAGCCCGCT 60.203 52.381 12.13 1.83 43.31 5.52
8313 13946 1.218763 GCTAAGTTAAGCTAGCCCGC 58.781 55.000 12.13 0.00 39.50 6.13
8314 13947 1.867166 GGCTAAGTTAAGCTAGCCCG 58.133 55.000 18.36 0.00 46.92 6.13
8317 13950 2.158885 AGCCAGGCTAAGTTAAGCTAGC 60.159 50.000 14.18 6.62 42.37 3.42
8318 13951 3.828875 AGCCAGGCTAAGTTAAGCTAG 57.171 47.619 14.18 0.00 42.37 3.42
8319 13952 3.641906 CCTAGCCAGGCTAAGTTAAGCTA 59.358 47.826 22.11 0.00 40.82 3.32
8320 13953 2.436173 CCTAGCCAGGCTAAGTTAAGCT 59.564 50.000 22.11 0.00 40.82 3.74
8321 13954 2.839975 CCTAGCCAGGCTAAGTTAAGC 58.160 52.381 22.11 0.00 40.82 3.09
8337 13970 3.827008 TCATTTGCTAGCCTCACCTAG 57.173 47.619 13.29 0.00 38.24 3.02
8338 13971 3.071602 GGATCATTTGCTAGCCTCACCTA 59.928 47.826 13.29 0.00 0.00 3.08
8339 13972 2.158696 GGATCATTTGCTAGCCTCACCT 60.159 50.000 13.29 0.00 0.00 4.00
8340 13973 2.225467 GGATCATTTGCTAGCCTCACC 58.775 52.381 13.29 3.13 0.00 4.02
8341 13974 2.923121 TGGATCATTTGCTAGCCTCAC 58.077 47.619 13.29 0.00 0.00 3.51
8342 13975 3.650281 TTGGATCATTTGCTAGCCTCA 57.350 42.857 13.29 0.00 0.00 3.86
8343 13976 3.696051 TGTTTGGATCATTTGCTAGCCTC 59.304 43.478 13.29 0.00 0.00 4.70
8344 13977 3.698040 CTGTTTGGATCATTTGCTAGCCT 59.302 43.478 13.29 0.00 0.00 4.58
8345 13978 3.696051 TCTGTTTGGATCATTTGCTAGCC 59.304 43.478 13.29 0.00 0.00 3.93
8346 13979 4.439289 GGTCTGTTTGGATCATTTGCTAGC 60.439 45.833 8.10 8.10 0.00 3.42
8347 13980 4.096984 GGGTCTGTTTGGATCATTTGCTAG 59.903 45.833 0.00 0.00 0.00 3.42
8348 13981 4.016444 GGGTCTGTTTGGATCATTTGCTA 58.984 43.478 0.00 0.00 0.00 3.49
8349 13982 2.827921 GGGTCTGTTTGGATCATTTGCT 59.172 45.455 0.00 0.00 0.00 3.91
8350 13983 2.827921 AGGGTCTGTTTGGATCATTTGC 59.172 45.455 0.00 0.00 0.00 3.68
8351 13984 4.523943 TCAAGGGTCTGTTTGGATCATTTG 59.476 41.667 0.00 0.00 0.00 2.32
8352 13985 4.739793 TCAAGGGTCTGTTTGGATCATTT 58.260 39.130 0.00 0.00 0.00 2.32
8353 13986 4.387026 TCAAGGGTCTGTTTGGATCATT 57.613 40.909 0.00 0.00 0.00 2.57
8354 13987 4.229123 AGATCAAGGGTCTGTTTGGATCAT 59.771 41.667 0.00 0.00 0.00 2.45
8355 13988 3.588842 AGATCAAGGGTCTGTTTGGATCA 59.411 43.478 0.00 0.00 0.00 2.92
8356 13989 4.195416 GAGATCAAGGGTCTGTTTGGATC 58.805 47.826 0.00 0.00 0.00 3.36
8357 13990 3.054065 GGAGATCAAGGGTCTGTTTGGAT 60.054 47.826 0.00 0.00 0.00 3.41
8358 13991 2.305927 GGAGATCAAGGGTCTGTTTGGA 59.694 50.000 0.00 0.00 0.00 3.53
8359 13992 2.619074 GGGAGATCAAGGGTCTGTTTGG 60.619 54.545 0.00 0.00 0.00 3.28
8360 13993 2.040278 TGGGAGATCAAGGGTCTGTTTG 59.960 50.000 0.00 0.00 0.00 2.93
8361 13994 2.040412 GTGGGAGATCAAGGGTCTGTTT 59.960 50.000 0.00 0.00 0.00 2.83
8362 13995 1.630878 GTGGGAGATCAAGGGTCTGTT 59.369 52.381 0.00 0.00 0.00 3.16
8363 13996 1.203364 AGTGGGAGATCAAGGGTCTGT 60.203 52.381 0.00 0.00 0.00 3.41
8364 13997 1.577736 AGTGGGAGATCAAGGGTCTG 58.422 55.000 0.00 0.00 0.00 3.51
8365 13998 2.316372 AGTAGTGGGAGATCAAGGGTCT 59.684 50.000 0.00 0.00 0.00 3.85
8366 13999 2.432510 CAGTAGTGGGAGATCAAGGGTC 59.567 54.545 0.00 0.00 0.00 4.46
8367 14000 2.225650 ACAGTAGTGGGAGATCAAGGGT 60.226 50.000 1.92 0.00 0.00 4.34
8368 14001 2.472029 ACAGTAGTGGGAGATCAAGGG 58.528 52.381 1.92 0.00 0.00 3.95
8369 14002 3.866651 CAACAGTAGTGGGAGATCAAGG 58.133 50.000 1.92 0.00 0.00 3.61
8370 14003 3.265791 GCAACAGTAGTGGGAGATCAAG 58.734 50.000 1.92 0.00 0.00 3.02
8371 14004 2.027192 GGCAACAGTAGTGGGAGATCAA 60.027 50.000 1.92 0.00 0.00 2.57
8372 14005 1.555075 GGCAACAGTAGTGGGAGATCA 59.445 52.381 1.92 0.00 0.00 2.92
8373 14006 1.555075 TGGCAACAGTAGTGGGAGATC 59.445 52.381 1.92 0.00 46.17 2.75
8421 14054 5.061179 GTGTTCTTCTGGCTTGTTACCTAA 58.939 41.667 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.