Multiple sequence alignment - TraesCS6D01G356000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G356000 chr6D 100.000 3553 0 0 1882 5434 450565085 450561533 0.000000e+00 6562.0
1 TraesCS6D01G356000 chr6D 100.000 1594 0 0 1 1594 450566966 450565373 0.000000e+00 2944.0
2 TraesCS6D01G356000 chr6D 93.631 157 9 1 633 789 450566182 450566027 3.270000e-57 233.0
3 TraesCS6D01G356000 chr6D 93.631 157 9 1 785 940 450566334 450566178 3.270000e-57 233.0
4 TraesCS6D01G356000 chr6A 92.483 2940 122 33 1933 4829 596087628 596084745 0.000000e+00 4113.0
5 TraesCS6D01G356000 chr6A 89.447 796 32 15 4 781 596089286 596088525 0.000000e+00 957.0
6 TraesCS6D01G356000 chr6A 87.255 816 86 14 785 1594 596088674 596087871 0.000000e+00 915.0
7 TraesCS6D01G356000 chr6A 96.825 63 2 0 1933 1995 596087703 596087641 7.440000e-19 106.0
8 TraesCS6D01G356000 chr6A 80.263 152 16 4 5142 5291 596083783 596083644 9.630000e-18 102.0
9 TraesCS6D01G356000 chr6A 98.039 51 1 0 1882 1932 596087802 596087752 7.500000e-14 89.8
10 TraesCS6D01G356000 chr6B 92.783 2896 113 43 1882 4724 684162539 684159687 0.000000e+00 4102.0
11 TraesCS6D01G356000 chr6B 93.243 814 48 5 785 1594 684163420 684162610 0.000000e+00 1192.0
12 TraesCS6D01G356000 chr6B 91.196 761 38 8 36 786 684164008 684163267 0.000000e+00 1007.0
13 TraesCS6D01G356000 chr6B 92.799 611 38 4 180 786 545356410 545357018 0.000000e+00 880.0
14 TraesCS6D01G356000 chr6B 89.965 289 25 4 785 1072 545356866 545357151 2.390000e-98 370.0
15 TraesCS6D01G356000 chr6B 83.776 339 25 17 5126 5434 684159448 684159110 1.480000e-75 294.0
16 TraesCS6D01G356000 chr6B 84.783 92 5 3 73 164 545356331 545356413 3.490000e-12 84.2
17 TraesCS6D01G356000 chr7A 92.962 611 37 4 180 786 617839666 617839058 0.000000e+00 885.0
18 TraesCS6D01G356000 chr7A 90.303 330 28 4 785 1113 617839210 617838884 3.890000e-116 429.0
19 TraesCS6D01G356000 chr7A 88.000 75 2 1 90 164 617839730 617839663 1.250000e-11 82.4
20 TraesCS6D01G356000 chr4A 91.520 625 42 9 180 797 731522135 731521515 0.000000e+00 850.0
21 TraesCS6D01G356000 chr4A 90.303 330 28 4 785 1113 731521680 731521354 3.890000e-116 429.0
22 TraesCS6D01G356000 chr3B 91.653 611 45 5 180 786 190847697 190848305 0.000000e+00 841.0
23 TraesCS6D01G356000 chr3B 89.394 330 31 4 785 1113 190848153 190848479 3.920000e-111 412.0
24 TraesCS6D01G356000 chr3A 88.889 612 36 6 180 787 709544183 709543600 0.000000e+00 725.0
25 TraesCS6D01G356000 chr3A 89.697 330 30 4 785 1113 709543753 709543427 8.420000e-113 418.0
26 TraesCS6D01G356000 chr3A 84.884 86 4 3 79 164 709544256 709544180 1.620000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G356000 chr6D 450561533 450566966 5433 True 2493.000000 6562 96.815500 1 5434 4 chr6D.!!$R1 5433
1 TraesCS6D01G356000 chr6A 596083644 596089286 5642 True 1047.133333 4113 90.718667 4 5291 6 chr6A.!!$R1 5287
2 TraesCS6D01G356000 chr6B 684159110 684164008 4898 True 1648.750000 4102 90.249500 36 5434 4 chr6B.!!$R1 5398
3 TraesCS6D01G356000 chr6B 545356331 545357151 820 False 444.733333 880 89.182333 73 1072 3 chr6B.!!$F1 999
4 TraesCS6D01G356000 chr7A 617838884 617839730 846 True 465.466667 885 90.421667 90 1113 3 chr7A.!!$R1 1023
5 TraesCS6D01G356000 chr4A 731521354 731522135 781 True 639.500000 850 90.911500 180 1113 2 chr4A.!!$R1 933
6 TraesCS6D01G356000 chr3B 190847697 190848479 782 False 626.500000 841 90.523500 180 1113 2 chr3B.!!$F1 933
7 TraesCS6D01G356000 chr3A 709543427 709544256 829 True 407.233333 725 87.823333 79 1113 3 chr3A.!!$R1 1034

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 980 0.040204 ACCCTCTTGAGGCATTTGGG 59.960 55.000 11.01 0.0 39.06 4.12 F
1095 1126 0.250640 CATGCTCTACAGCCCCCATC 60.251 60.000 0.00 0.0 46.26 3.51 F
1167 1198 0.401738 TGAGGAAGCCTTCAACAGGG 59.598 55.000 6.80 0.0 44.16 4.45 F
1193 1224 0.404040 TTGCTCCCAGGTTTCCGAAT 59.596 50.000 0.00 0.0 0.00 3.34 F
1289 1320 0.912486 GGGTACATCTGGTCAGCCTT 59.088 55.000 0.00 0.0 35.27 4.35 F
1406 1437 1.689273 CCCTCAGGTGCCTGTATCTAC 59.311 57.143 16.85 0.0 43.96 2.59 F
1451 1482 3.512329 TGAGTCATGGAGGCGTTTACTTA 59.488 43.478 0.00 0.0 0.00 2.24 F
3260 3424 0.248054 CTGCGACTTGTGCGTTTTGT 60.248 50.000 0.00 0.0 34.24 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2428 2591 0.743097 GCCAGGTGCAGATTCATTCC 59.257 55.000 0.00 0.00 40.77 3.01 R
2866 3029 5.419788 TCCAATCAAGATAATTGCTGCAAGT 59.580 36.000 20.72 20.16 35.30 3.16 R
3125 3289 5.495640 TCAATTTTTCCAGCCAAAACAGTT 58.504 33.333 0.00 0.00 0.00 3.16 R
3194 3358 8.798153 CAGAACTTTTCAAGTGTACACAAAATC 58.202 33.333 27.06 17.70 41.91 2.17 R
3244 3408 1.659211 GCCTACAAAACGCACAAGTCG 60.659 52.381 0.00 0.00 0.00 4.18 R
3260 3424 4.643795 GGCATGCTGTGAAGCCTA 57.356 55.556 18.92 0.00 43.70 3.93 R
3326 3490 7.601856 CAAGATGTAACAGAAAATAAAGGCCA 58.398 34.615 5.01 0.00 0.00 5.36 R
4853 5083 0.100682 TCCTCTGCGAGCGAACATAC 59.899 55.000 0.00 0.00 0.00 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.349503 TTGGTCCGCTGCAGCCAT 62.350 61.111 32.07 0.00 37.91 4.40
20 21 4.783621 GGTCCGCTGCAGCCATCA 62.784 66.667 32.07 11.15 37.91 3.07
25 31 2.252346 CGCTGCAGCCATCATCTCC 61.252 63.158 32.07 1.67 37.91 3.71
203 219 1.770658 TGGAGATTGGCGAATCTGGAT 59.229 47.619 26.26 4.73 47.00 3.41
329 345 1.141881 CCTCGGCTACTGCATCGTT 59.858 57.895 0.00 0.00 41.91 3.85
432 457 3.719268 AGATTACAGCATTGGTCACCA 57.281 42.857 0.00 0.00 0.00 4.17
439 467 3.326588 ACAGCATTGGTCACCAGTAGTAA 59.673 43.478 0.00 0.00 33.81 2.24
474 502 1.069296 TGAATCCAAAGAAGCGCGTTG 60.069 47.619 8.43 3.38 36.00 4.10
486 514 4.666532 GCGTTGCGTGTGGCTGTC 62.667 66.667 0.00 0.00 44.05 3.51
495 524 1.071605 GTGTGGCTGTCTGATTCGTC 58.928 55.000 0.00 0.00 0.00 4.20
504 533 1.000955 GTCTGATTCGTCTGGTGGTGT 59.999 52.381 0.00 0.00 0.00 4.16
539 569 2.623878 TGCCAGGTTCTTTACGTGAA 57.376 45.000 0.00 0.00 43.62 3.18
549 579 1.529438 CTTTACGTGAACATGGCGTGT 59.471 47.619 6.51 6.51 44.84 4.49
766 797 5.121811 GCAAATTCTCTCTAGCCATGAGAA 58.878 41.667 14.73 14.73 46.50 2.87
767 798 5.587844 GCAAATTCTCTCTAGCCATGAGAAA 59.412 40.000 15.68 6.03 45.87 2.52
768 799 6.262720 GCAAATTCTCTCTAGCCATGAGAAAT 59.737 38.462 15.68 9.00 45.87 2.17
769 800 7.640852 CAAATTCTCTCTAGCCATGAGAAATG 58.359 38.462 15.68 14.11 45.87 2.32
770 801 5.946942 TTCTCTCTAGCCATGAGAAATGT 57.053 39.130 11.87 0.00 41.88 2.71
771 802 7.609097 ATTCTCTCTAGCCATGAGAAATGTA 57.391 36.000 15.68 1.30 45.87 2.29
772 803 7.423844 TTCTCTCTAGCCATGAGAAATGTAA 57.576 36.000 11.87 0.00 41.88 2.41
773 804 7.609097 TCTCTCTAGCCATGAGAAATGTAAT 57.391 36.000 0.00 0.00 39.69 1.89
774 805 7.665690 TCTCTCTAGCCATGAGAAATGTAATC 58.334 38.462 0.00 0.00 39.69 1.75
775 806 6.763355 TCTCTAGCCATGAGAAATGTAATCC 58.237 40.000 0.00 0.00 37.59 3.01
776 807 6.556495 TCTCTAGCCATGAGAAATGTAATCCT 59.444 38.462 0.00 0.00 37.59 3.24
777 808 6.763355 TCTAGCCATGAGAAATGTAATCCTC 58.237 40.000 0.00 0.00 0.00 3.71
778 809 4.723309 AGCCATGAGAAATGTAATCCTCC 58.277 43.478 0.00 0.00 0.00 4.30
779 810 4.166725 AGCCATGAGAAATGTAATCCTCCA 59.833 41.667 0.00 0.00 0.00 3.86
780 811 4.276926 GCCATGAGAAATGTAATCCTCCAC 59.723 45.833 0.00 0.00 0.00 4.02
781 812 5.439721 CCATGAGAAATGTAATCCTCCACA 58.560 41.667 0.00 0.00 0.00 4.17
782 813 5.297776 CCATGAGAAATGTAATCCTCCACAC 59.702 44.000 0.00 0.00 0.00 3.82
783 814 5.762179 TGAGAAATGTAATCCTCCACACT 57.238 39.130 0.00 0.00 0.00 3.55
784 815 5.734720 TGAGAAATGTAATCCTCCACACTC 58.265 41.667 0.00 0.00 0.00 3.51
785 816 5.485353 TGAGAAATGTAATCCTCCACACTCT 59.515 40.000 0.00 0.00 0.00 3.24
786 817 6.667848 TGAGAAATGTAATCCTCCACACTCTA 59.332 38.462 0.00 0.00 0.00 2.43
787 818 7.118496 AGAAATGTAATCCTCCACACTCTAG 57.882 40.000 0.00 0.00 0.00 2.43
788 819 6.897966 AGAAATGTAATCCTCCACACTCTAGA 59.102 38.462 0.00 0.00 0.00 2.43
789 820 7.566879 AGAAATGTAATCCTCCACACTCTAGAT 59.433 37.037 0.00 0.00 0.00 1.98
790 821 7.682787 AATGTAATCCTCCACACTCTAGATT 57.317 36.000 0.00 0.00 0.00 2.40
791 822 6.471233 TGTAATCCTCCACACTCTAGATTG 57.529 41.667 8.46 8.46 0.00 2.67
792 823 5.958380 TGTAATCCTCCACACTCTAGATTGT 59.042 40.000 9.79 9.79 0.00 2.71
793 824 5.350504 AATCCTCCACACTCTAGATTGTG 57.649 43.478 27.74 27.74 40.38 3.33
794 825 2.497675 TCCTCCACACTCTAGATTGTGC 59.502 50.000 28.77 0.00 39.67 4.57
795 826 2.234661 CCTCCACACTCTAGATTGTGCA 59.765 50.000 28.77 18.87 39.67 4.57
796 827 3.118482 CCTCCACACTCTAGATTGTGCAT 60.118 47.826 28.77 4.11 39.67 3.96
797 828 4.100035 CCTCCACACTCTAGATTGTGCATA 59.900 45.833 28.77 18.37 39.67 3.14
798 829 5.395657 CCTCCACACTCTAGATTGTGCATAA 60.396 44.000 28.77 16.53 39.67 1.90
799 830 6.048732 TCCACACTCTAGATTGTGCATAAA 57.951 37.500 28.77 13.69 39.67 1.40
800 831 6.472016 TCCACACTCTAGATTGTGCATAAAA 58.528 36.000 28.77 12.36 39.67 1.52
801 832 6.371548 TCCACACTCTAGATTGTGCATAAAAC 59.628 38.462 28.77 0.00 39.67 2.43
802 833 6.403636 CCACACTCTAGATTGTGCATAAAACC 60.404 42.308 28.77 0.00 39.67 3.27
803 834 6.149308 CACACTCTAGATTGTGCATAAAACCA 59.851 38.462 24.87 0.00 35.67 3.67
804 835 6.714810 ACACTCTAGATTGTGCATAAAACCAA 59.285 34.615 14.39 0.00 37.68 3.67
805 836 7.023575 CACTCTAGATTGTGCATAAAACCAAC 58.976 38.462 0.00 0.00 0.00 3.77
806 837 6.128282 ACTCTAGATTGTGCATAAAACCAACG 60.128 38.462 0.00 0.00 0.00 4.10
807 838 5.935206 TCTAGATTGTGCATAAAACCAACGA 59.065 36.000 0.00 0.00 0.00 3.85
808 839 5.446143 AGATTGTGCATAAAACCAACGAA 57.554 34.783 0.00 0.00 0.00 3.85
809 840 5.460646 AGATTGTGCATAAAACCAACGAAG 58.539 37.500 0.00 0.00 0.00 3.79
810 841 3.006659 TGTGCATAAAACCAACGAAGC 57.993 42.857 0.00 0.00 0.00 3.86
811 842 1.976045 GTGCATAAAACCAACGAAGCG 59.024 47.619 0.00 0.00 0.00 4.68
812 843 1.874231 TGCATAAAACCAACGAAGCGA 59.126 42.857 0.00 0.00 0.00 4.93
813 844 2.095969 TGCATAAAACCAACGAAGCGAG 60.096 45.455 0.00 0.00 0.00 5.03
814 845 2.158841 GCATAAAACCAACGAAGCGAGA 59.841 45.455 0.00 0.00 0.00 4.04
815 846 3.364565 GCATAAAACCAACGAAGCGAGAA 60.365 43.478 0.00 0.00 0.00 2.87
816 847 4.394795 CATAAAACCAACGAAGCGAGAAG 58.605 43.478 0.00 0.00 0.00 2.85
827 858 3.814577 GCGAGAAGCTACCAGTGAA 57.185 52.632 0.00 0.00 44.04 3.18
828 859 2.301577 GCGAGAAGCTACCAGTGAAT 57.698 50.000 0.00 0.00 44.04 2.57
829 860 2.622436 GCGAGAAGCTACCAGTGAATT 58.378 47.619 0.00 0.00 44.04 2.17
830 861 2.605366 GCGAGAAGCTACCAGTGAATTC 59.395 50.000 0.00 0.00 44.04 2.17
831 862 3.677424 GCGAGAAGCTACCAGTGAATTCT 60.677 47.826 7.05 0.00 44.04 2.40
832 863 4.499183 CGAGAAGCTACCAGTGAATTCTT 58.501 43.478 7.05 0.00 0.00 2.52
833 864 4.932200 CGAGAAGCTACCAGTGAATTCTTT 59.068 41.667 7.05 0.00 0.00 2.52
834 865 5.163913 CGAGAAGCTACCAGTGAATTCTTTG 60.164 44.000 7.05 5.04 0.00 2.77
835 866 5.625150 AGAAGCTACCAGTGAATTCTTTGT 58.375 37.500 7.05 1.86 0.00 2.83
836 867 6.064717 AGAAGCTACCAGTGAATTCTTTGTT 58.935 36.000 7.05 0.00 0.00 2.83
837 868 6.547510 AGAAGCTACCAGTGAATTCTTTGTTT 59.452 34.615 7.05 0.00 0.00 2.83
838 869 6.076981 AGCTACCAGTGAATTCTTTGTTTG 57.923 37.500 7.05 0.00 0.00 2.93
839 870 5.594317 AGCTACCAGTGAATTCTTTGTTTGT 59.406 36.000 7.05 2.22 0.00 2.83
840 871 6.096846 AGCTACCAGTGAATTCTTTGTTTGTT 59.903 34.615 7.05 0.00 0.00 2.83
841 872 6.756542 GCTACCAGTGAATTCTTTGTTTGTTT 59.243 34.615 7.05 0.00 0.00 2.83
842 873 6.966435 ACCAGTGAATTCTTTGTTTGTTTG 57.034 33.333 7.05 0.00 0.00 2.93
843 874 5.351189 ACCAGTGAATTCTTTGTTTGTTTGC 59.649 36.000 7.05 0.00 0.00 3.68
844 875 5.581874 CCAGTGAATTCTTTGTTTGTTTGCT 59.418 36.000 7.05 0.00 0.00 3.91
845 876 6.237915 CCAGTGAATTCTTTGTTTGTTTGCTC 60.238 38.462 7.05 0.00 0.00 4.26
846 877 5.812127 AGTGAATTCTTTGTTTGTTTGCTCC 59.188 36.000 7.05 0.00 0.00 4.70
847 878 5.580297 GTGAATTCTTTGTTTGTTTGCTCCA 59.420 36.000 7.05 0.00 0.00 3.86
848 879 6.258507 GTGAATTCTTTGTTTGTTTGCTCCAT 59.741 34.615 7.05 0.00 0.00 3.41
849 880 6.258287 TGAATTCTTTGTTTGTTTGCTCCATG 59.742 34.615 7.05 0.00 0.00 3.66
850 881 4.057406 TCTTTGTTTGTTTGCTCCATGG 57.943 40.909 4.97 4.97 0.00 3.66
851 882 3.450457 TCTTTGTTTGTTTGCTCCATGGT 59.550 39.130 12.58 0.00 0.00 3.55
852 883 3.451141 TTGTTTGTTTGCTCCATGGTC 57.549 42.857 12.58 5.72 0.00 4.02
853 884 1.336440 TGTTTGTTTGCTCCATGGTCG 59.664 47.619 12.58 5.52 0.00 4.79
854 885 1.336755 GTTTGTTTGCTCCATGGTCGT 59.663 47.619 12.58 0.00 0.00 4.34
855 886 0.950836 TTGTTTGCTCCATGGTCGTG 59.049 50.000 12.58 2.18 0.00 4.35
856 887 0.179032 TGTTTGCTCCATGGTCGTGT 60.179 50.000 12.58 0.00 0.00 4.49
857 888 0.238289 GTTTGCTCCATGGTCGTGTG 59.762 55.000 12.58 0.00 0.00 3.82
858 889 0.107643 TTTGCTCCATGGTCGTGTGA 59.892 50.000 12.58 0.00 0.00 3.58
859 890 0.324614 TTGCTCCATGGTCGTGTGAT 59.675 50.000 12.58 0.00 0.00 3.06
860 891 0.108186 TGCTCCATGGTCGTGTGATC 60.108 55.000 12.58 0.00 0.00 2.92
861 892 0.811616 GCTCCATGGTCGTGTGATCC 60.812 60.000 12.58 0.00 0.00 3.36
862 893 0.826715 CTCCATGGTCGTGTGATCCT 59.173 55.000 12.58 0.00 0.00 3.24
863 894 1.208052 CTCCATGGTCGTGTGATCCTT 59.792 52.381 12.58 0.00 0.00 3.36
864 895 1.066215 TCCATGGTCGTGTGATCCTTG 60.066 52.381 12.58 0.00 0.00 3.61
865 896 1.339055 CCATGGTCGTGTGATCCTTGT 60.339 52.381 2.57 0.00 0.00 3.16
866 897 1.733912 CATGGTCGTGTGATCCTTGTG 59.266 52.381 0.00 0.00 0.00 3.33
867 898 1.044611 TGGTCGTGTGATCCTTGTGA 58.955 50.000 0.00 0.00 0.00 3.58
868 899 1.623311 TGGTCGTGTGATCCTTGTGAT 59.377 47.619 0.00 0.00 36.01 3.06
869 900 2.038426 TGGTCGTGTGATCCTTGTGATT 59.962 45.455 0.00 0.00 32.41 2.57
870 901 2.416547 GGTCGTGTGATCCTTGTGATTG 59.583 50.000 0.00 0.00 32.41 2.67
871 902 3.067106 GTCGTGTGATCCTTGTGATTGT 58.933 45.455 0.00 0.00 32.41 2.71
872 903 3.498397 GTCGTGTGATCCTTGTGATTGTT 59.502 43.478 0.00 0.00 32.41 2.83
873 904 4.688879 GTCGTGTGATCCTTGTGATTGTTA 59.311 41.667 0.00 0.00 32.41 2.41
874 905 4.929211 TCGTGTGATCCTTGTGATTGTTAG 59.071 41.667 0.00 0.00 32.41 2.34
875 906 4.690748 CGTGTGATCCTTGTGATTGTTAGT 59.309 41.667 0.00 0.00 32.41 2.24
876 907 5.389830 CGTGTGATCCTTGTGATTGTTAGTG 60.390 44.000 0.00 0.00 32.41 2.74
877 908 5.470098 GTGTGATCCTTGTGATTGTTAGTGT 59.530 40.000 0.00 0.00 32.41 3.55
878 909 5.469760 TGTGATCCTTGTGATTGTTAGTGTG 59.530 40.000 0.00 0.00 32.41 3.82
879 910 5.470098 GTGATCCTTGTGATTGTTAGTGTGT 59.530 40.000 0.00 0.00 32.41 3.72
880 911 6.649141 GTGATCCTTGTGATTGTTAGTGTGTA 59.351 38.462 0.00 0.00 32.41 2.90
881 912 6.873605 TGATCCTTGTGATTGTTAGTGTGTAG 59.126 38.462 0.00 0.00 32.41 2.74
882 913 5.547465 TCCTTGTGATTGTTAGTGTGTAGG 58.453 41.667 0.00 0.00 0.00 3.18
883 914 5.071250 TCCTTGTGATTGTTAGTGTGTAGGT 59.929 40.000 0.00 0.00 0.00 3.08
884 915 5.763204 CCTTGTGATTGTTAGTGTGTAGGTT 59.237 40.000 0.00 0.00 0.00 3.50
885 916 6.293407 CCTTGTGATTGTTAGTGTGTAGGTTG 60.293 42.308 0.00 0.00 0.00 3.77
886 917 5.676552 TGTGATTGTTAGTGTGTAGGTTGT 58.323 37.500 0.00 0.00 0.00 3.32
887 918 5.525745 TGTGATTGTTAGTGTGTAGGTTGTG 59.474 40.000 0.00 0.00 0.00 3.33
888 919 5.049680 GTGATTGTTAGTGTGTAGGTTGTGG 60.050 44.000 0.00 0.00 0.00 4.17
889 920 4.757019 TTGTTAGTGTGTAGGTTGTGGA 57.243 40.909 0.00 0.00 0.00 4.02
890 921 4.967084 TGTTAGTGTGTAGGTTGTGGAT 57.033 40.909 0.00 0.00 0.00 3.41
891 922 4.637276 TGTTAGTGTGTAGGTTGTGGATG 58.363 43.478 0.00 0.00 0.00 3.51
892 923 2.185004 AGTGTGTAGGTTGTGGATGC 57.815 50.000 0.00 0.00 0.00 3.91
893 924 1.699634 AGTGTGTAGGTTGTGGATGCT 59.300 47.619 0.00 0.00 0.00 3.79
894 925 1.806542 GTGTGTAGGTTGTGGATGCTG 59.193 52.381 0.00 0.00 0.00 4.41
895 926 0.804989 GTGTAGGTTGTGGATGCTGC 59.195 55.000 0.00 0.00 0.00 5.25
896 927 0.399833 TGTAGGTTGTGGATGCTGCA 59.600 50.000 4.13 4.13 0.00 4.41
897 928 1.202867 TGTAGGTTGTGGATGCTGCAA 60.203 47.619 6.36 0.00 0.00 4.08
898 929 1.885887 GTAGGTTGTGGATGCTGCAAA 59.114 47.619 6.36 0.00 0.00 3.68
899 930 0.675633 AGGTTGTGGATGCTGCAAAC 59.324 50.000 6.36 5.99 0.00 2.93
900 931 0.675633 GGTTGTGGATGCTGCAAACT 59.324 50.000 6.36 0.00 0.00 2.66
901 932 1.336240 GGTTGTGGATGCTGCAAACTC 60.336 52.381 6.36 0.00 0.00 3.01
902 933 1.610522 GTTGTGGATGCTGCAAACTCT 59.389 47.619 6.36 0.00 0.00 3.24
903 934 1.527034 TGTGGATGCTGCAAACTCTC 58.473 50.000 6.36 0.00 0.00 3.20
904 935 1.072806 TGTGGATGCTGCAAACTCTCT 59.927 47.619 6.36 0.00 0.00 3.10
905 936 1.736681 GTGGATGCTGCAAACTCTCTC 59.263 52.381 6.36 0.00 0.00 3.20
906 937 1.627329 TGGATGCTGCAAACTCTCTCT 59.373 47.619 6.36 0.00 0.00 3.10
907 938 2.833943 TGGATGCTGCAAACTCTCTCTA 59.166 45.455 6.36 0.00 0.00 2.43
908 939 3.118847 TGGATGCTGCAAACTCTCTCTAG 60.119 47.826 6.36 0.00 0.00 2.43
909 940 2.376808 TGCTGCAAACTCTCTCTAGC 57.623 50.000 0.00 0.00 0.00 3.42
910 941 1.066573 TGCTGCAAACTCTCTCTAGCC 60.067 52.381 0.00 0.00 0.00 3.93
911 942 1.066573 GCTGCAAACTCTCTCTAGCCA 60.067 52.381 0.00 0.00 0.00 4.75
912 943 2.419851 GCTGCAAACTCTCTCTAGCCAT 60.420 50.000 0.00 0.00 0.00 4.40
913 944 3.196463 CTGCAAACTCTCTCTAGCCATG 58.804 50.000 0.00 0.00 0.00 3.66
914 945 2.833943 TGCAAACTCTCTCTAGCCATGA 59.166 45.455 0.00 0.00 0.00 3.07
915 946 3.118847 TGCAAACTCTCTCTAGCCATGAG 60.119 47.826 0.00 0.00 0.00 2.90
916 947 3.131933 GCAAACTCTCTCTAGCCATGAGA 59.868 47.826 0.00 0.00 38.13 3.27
929 960 5.850557 AGCCATGAGAGATATAATCCTCG 57.149 43.478 0.00 0.00 34.75 4.63
936 967 5.251932 TGAGAGATATAATCCTCGACCCTCT 59.748 44.000 0.00 0.00 34.75 3.69
948 979 1.467920 GACCCTCTTGAGGCATTTGG 58.532 55.000 11.01 0.00 0.00 3.28
949 980 0.040204 ACCCTCTTGAGGCATTTGGG 59.960 55.000 11.01 0.00 39.06 4.12
969 1000 1.005630 GTCTCACTTCACAGCCGCT 60.006 57.895 0.00 0.00 0.00 5.52
989 1020 6.677920 GCCGCTTTGCTTGAATCTAGAAATTA 60.678 38.462 0.00 0.00 0.00 1.40
1094 1125 0.990282 ACATGCTCTACAGCCCCCAT 60.990 55.000 0.00 0.00 46.26 4.00
1095 1126 0.250640 CATGCTCTACAGCCCCCATC 60.251 60.000 0.00 0.00 46.26 3.51
1120 1151 5.392487 GCTCTCATCCTAAAACTTTCAAGGC 60.392 44.000 0.00 0.00 0.00 4.35
1167 1198 0.401738 TGAGGAAGCCTTCAACAGGG 59.598 55.000 6.80 0.00 44.16 4.45
1179 1210 1.026718 CAACAGGGACCCGATTGCTC 61.027 60.000 14.67 0.00 0.00 4.26
1190 1221 1.369091 CGATTGCTCCCAGGTTTCCG 61.369 60.000 0.00 0.00 0.00 4.30
1193 1224 0.404040 TTGCTCCCAGGTTTCCGAAT 59.596 50.000 0.00 0.00 0.00 3.34
1202 1233 3.572255 CCAGGTTTCCGAATTTTGGAGAA 59.428 43.478 5.52 1.92 36.72 2.87
1289 1320 0.912486 GGGTACATCTGGTCAGCCTT 59.088 55.000 0.00 0.00 35.27 4.35
1406 1437 1.689273 CCCTCAGGTGCCTGTATCTAC 59.311 57.143 16.85 0.00 43.96 2.59
1419 1450 9.542462 GTGCCTGTATCTACTGTCATAAATTAA 57.458 33.333 0.00 0.00 0.00 1.40
1451 1482 3.512329 TGAGTCATGGAGGCGTTTACTTA 59.488 43.478 0.00 0.00 0.00 2.24
1461 1492 6.127281 TGGAGGCGTTTACTTATTCACATCTA 60.127 38.462 0.00 0.00 0.00 1.98
1464 1495 6.047231 GGCGTTTACTTATTCACATCTACCT 58.953 40.000 0.00 0.00 0.00 3.08
1579 1614 9.265901 CCATTTTGTTGTGGTTTAACATGATTA 57.734 29.630 0.00 0.00 37.81 1.75
1941 2099 3.809832 GTGAGAGTTTGCTGTACACACAT 59.190 43.478 0.00 0.00 33.14 3.21
2011 2169 5.695816 GCTTCAGATGGATGATTGTAGACTC 59.304 44.000 0.00 0.00 0.00 3.36
2270 2433 7.675062 AGGATTTCAGTATATAGAAGCCTGTG 58.325 38.462 10.23 0.00 32.60 3.66
2296 2459 9.282569 GGGAATTATGAGGCTCATATAATGATC 57.717 37.037 31.74 20.67 38.94 2.92
2428 2591 7.953158 AGAATAACATCCATGTCTTCATACG 57.047 36.000 13.40 0.00 40.80 3.06
2475 2638 8.395633 GTTTCAGGAAATTGTATGTATAAGCGT 58.604 33.333 0.00 0.00 32.36 5.07
2494 2657 9.716507 ATAAGCGTAATAACATTTCAATCACAC 57.283 29.630 0.00 0.00 0.00 3.82
2499 2662 5.957842 ATAACATTTCAATCACACGGTGT 57.042 34.783 8.21 8.21 34.79 4.16
3052 3216 6.420903 TGAGAAATCACTCAGTTTCAGTAACG 59.579 38.462 0.00 0.00 41.21 3.18
3194 3358 9.988350 CTTTATGTAAGTAGCAAGTGGTATTTG 57.012 33.333 8.11 0.00 31.85 2.32
3244 3408 4.039151 TGATCTCGTCTTCTGATTCTGC 57.961 45.455 0.00 0.00 0.00 4.26
3260 3424 0.248054 CTGCGACTTGTGCGTTTTGT 60.248 50.000 0.00 0.00 34.24 2.83
3326 3490 8.131100 CGCAGATATGGAAAAATTTCACAGTAT 58.869 33.333 8.06 1.35 38.92 2.12
3427 3591 3.881220 TGGATAAAGGGATCACCGTTTC 58.119 45.455 9.61 5.33 46.87 2.78
3608 3773 2.158579 TGGTTCCCTTGGTAAGTTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
3629 3794 7.601856 TGGACTAGTTGGCAATAAATTTTCAG 58.398 34.615 1.92 0.00 0.00 3.02
3635 3800 8.189119 AGTTGGCAATAAATTTTCAGGACTTA 57.811 30.769 1.92 0.00 0.00 2.24
3683 3848 8.589335 TTTCAGTCTGATGTTACTGTCTAAAC 57.411 34.615 2.68 0.00 42.96 2.01
3851 4016 8.793592 GTTTTACTCATATGTGAAACTTTCCCT 58.206 33.333 11.60 0.00 40.74 4.20
3854 4019 7.454260 ACTCATATGTGAAACTTTCCCTTTC 57.546 36.000 11.60 0.00 38.04 2.62
3889 4055 3.278574 ACGCTTGCTAATTCTTATGCCA 58.721 40.909 0.00 0.00 0.00 4.92
3893 4059 5.277047 GCTTGCTAATTCTTATGCCACTTC 58.723 41.667 0.00 0.00 0.00 3.01
3959 4125 6.070424 TCCGTTAAGTGGTATCCTTTGATTCT 60.070 38.462 0.00 0.00 32.18 2.40
3960 4126 6.258068 CCGTTAAGTGGTATCCTTTGATTCTC 59.742 42.308 0.00 0.00 32.18 2.87
4001 4167 6.706270 ACTAAACCTCTGACTGTTTGTATGTG 59.294 38.462 9.60 0.00 36.23 3.21
4020 4186 3.054878 GTGGCTGTTTCTGATTTGCTTG 58.945 45.455 0.00 0.00 0.00 4.01
4100 4280 2.224161 GCATAACCAGTCCAGCTCTAGG 60.224 54.545 0.00 0.00 0.00 3.02
4107 4287 2.636893 CAGTCCAGCTCTAGGCCAATAT 59.363 50.000 5.01 0.00 43.05 1.28
4108 4288 2.636893 AGTCCAGCTCTAGGCCAATATG 59.363 50.000 5.01 0.00 43.05 1.78
4116 4296 4.274459 GCTCTAGGCCAATATGAGTTGTTG 59.726 45.833 5.01 0.00 34.27 3.33
4145 4325 5.059833 CCTATTGAGTTAGGTTGCTGATCC 58.940 45.833 0.00 0.00 35.06 3.36
4155 4335 2.096496 GGTTGCTGATCCGTTCATTCAG 59.904 50.000 0.00 0.00 39.87 3.02
4198 4378 9.006839 GTTGATTTGGAAGATGCATAGATATCA 57.993 33.333 0.00 0.48 0.00 2.15
4409 4595 0.106469 TGTACCAAAAGCCTGTGCCA 60.106 50.000 0.00 0.00 38.69 4.92
4418 4604 0.185901 AGCCTGTGCCAAAGAAAGGA 59.814 50.000 0.00 0.00 38.69 3.36
4430 4616 6.154363 TGCCAAAGAAAGGAAAGAAAGAAGAA 59.846 34.615 0.00 0.00 0.00 2.52
4433 4619 9.905171 CCAAAGAAAGGAAAGAAAGAAGAATAG 57.095 33.333 0.00 0.00 0.00 1.73
4434 4620 9.905171 CAAAGAAAGGAAAGAAAGAAGAATAGG 57.095 33.333 0.00 0.00 0.00 2.57
4435 4621 8.642935 AAGAAAGGAAAGAAAGAAGAATAGGG 57.357 34.615 0.00 0.00 0.00 3.53
4436 4622 6.661377 AGAAAGGAAAGAAAGAAGAATAGGGC 59.339 38.462 0.00 0.00 0.00 5.19
4438 4624 4.019231 AGGAAAGAAAGAAGAATAGGGCGT 60.019 41.667 0.00 0.00 0.00 5.68
4439 4625 4.095036 GGAAAGAAAGAAGAATAGGGCGTG 59.905 45.833 0.00 0.00 0.00 5.34
4440 4626 4.553330 AAGAAAGAAGAATAGGGCGTGA 57.447 40.909 0.00 0.00 0.00 4.35
4441 4627 4.130286 AGAAAGAAGAATAGGGCGTGAG 57.870 45.455 0.00 0.00 0.00 3.51
4442 4628 3.769844 AGAAAGAAGAATAGGGCGTGAGA 59.230 43.478 0.00 0.00 0.00 3.27
4444 4630 3.528597 AGAAGAATAGGGCGTGAGAAC 57.471 47.619 0.00 0.00 0.00 3.01
4445 4631 3.100671 AGAAGAATAGGGCGTGAGAACT 58.899 45.455 0.00 0.00 0.00 3.01
4446 4632 3.131400 AGAAGAATAGGGCGTGAGAACTC 59.869 47.826 0.00 0.00 0.00 3.01
4448 4634 3.100671 AGAATAGGGCGTGAGAACTCTT 58.899 45.455 3.51 0.00 0.00 2.85
4449 4635 2.969628 ATAGGGCGTGAGAACTCTTG 57.030 50.000 3.51 0.00 0.00 3.02
4450 4636 0.246635 TAGGGCGTGAGAACTCTTGC 59.753 55.000 3.51 6.80 0.00 4.01
4451 4637 1.004440 GGGCGTGAGAACTCTTGCT 60.004 57.895 14.47 0.00 33.26 3.91
4452 4638 1.294659 GGGCGTGAGAACTCTTGCTG 61.295 60.000 14.47 0.00 33.26 4.41
4453 4639 1.495069 GCGTGAGAACTCTTGCTGC 59.505 57.895 3.51 0.00 0.00 5.25
4495 4705 2.360165 GGGCTATTCTTGGAGCAACATG 59.640 50.000 0.00 0.00 40.64 3.21
4496 4706 2.223665 GGCTATTCTTGGAGCAACATGC 60.224 50.000 0.00 0.00 45.46 4.06
4507 4717 0.958091 GCAACATGCACCACTTACCA 59.042 50.000 0.00 0.00 44.26 3.25
4508 4718 1.068333 GCAACATGCACCACTTACCAG 60.068 52.381 0.00 0.00 44.26 4.00
4510 4720 1.064003 ACATGCACCACTTACCAGGA 58.936 50.000 0.00 0.00 0.00 3.86
4511 4721 1.271379 ACATGCACCACTTACCAGGAC 60.271 52.381 0.00 0.00 0.00 3.85
4512 4722 1.003580 CATGCACCACTTACCAGGACT 59.996 52.381 0.00 0.00 0.00 3.85
4513 4723 1.136828 TGCACCACTTACCAGGACTT 58.863 50.000 0.00 0.00 0.00 3.01
4520 4738 3.007940 CCACTTACCAGGACTTCATGACA 59.992 47.826 0.00 0.00 0.00 3.58
4521 4739 4.504864 CCACTTACCAGGACTTCATGACAA 60.505 45.833 0.00 0.00 0.00 3.18
4532 4750 5.048713 GGACTTCATGACAAAAACAGTAGGG 60.049 44.000 0.00 0.00 0.00 3.53
4536 4754 5.935945 TCATGACAAAAACAGTAGGGAGAA 58.064 37.500 0.00 0.00 0.00 2.87
4553 4771 4.381292 GGGAGAAAATTCATGCAGACTTGG 60.381 45.833 0.00 0.00 0.00 3.61
4563 4781 1.340308 TGCAGACTTGGGTGATGATGG 60.340 52.381 0.00 0.00 0.00 3.51
4618 4836 8.225107 TTTTTCGAAGTATCGTAAAATGACTGG 58.775 33.333 10.34 0.00 46.40 4.00
4619 4837 5.067021 CGAAGTATCGTAAAATGACTGGC 57.933 43.478 0.00 0.00 44.06 4.85
4629 4847 5.049680 CGTAAAATGACTGGCTGTGTAGTTT 60.050 40.000 0.29 5.56 0.00 2.66
4653 4871 4.407296 TCAATTGCCACCTTGGTTAGTTTT 59.593 37.500 0.00 0.00 40.46 2.43
4747 4968 0.247460 GCAATTCTCCCCACTTTGGC 59.753 55.000 0.00 0.00 35.79 4.52
4786 5007 7.884354 TGTACCGTTATTTCCTTTTCCAAGTAT 59.116 33.333 0.00 0.00 0.00 2.12
4787 5008 9.382275 GTACCGTTATTTCCTTTTCCAAGTATA 57.618 33.333 0.00 0.00 0.00 1.47
4789 5010 9.299465 ACCGTTATTTCCTTTTCCAAGTATAAA 57.701 29.630 0.00 0.00 0.00 1.40
4829 5059 5.088739 GCTAGGTTTGTCATGTTCAAATCG 58.911 41.667 16.72 9.33 39.82 3.34
4831 5061 4.858935 AGGTTTGTCATGTTCAAATCGTG 58.141 39.130 16.72 0.00 39.82 4.35
4833 5063 3.913548 TTGTCATGTTCAAATCGTGGG 57.086 42.857 0.00 0.00 0.00 4.61
4834 5064 3.133141 TGTCATGTTCAAATCGTGGGA 57.867 42.857 0.00 0.00 0.00 4.37
4836 5066 4.837972 TGTCATGTTCAAATCGTGGGATA 58.162 39.130 0.00 0.00 31.01 2.59
4837 5067 5.249420 TGTCATGTTCAAATCGTGGGATAA 58.751 37.500 0.00 0.00 31.01 1.75
4838 5068 5.885352 TGTCATGTTCAAATCGTGGGATAAT 59.115 36.000 0.00 0.00 31.01 1.28
4839 5069 6.376864 TGTCATGTTCAAATCGTGGGATAATT 59.623 34.615 0.00 0.00 31.01 1.40
4840 5070 6.692681 GTCATGTTCAAATCGTGGGATAATTG 59.307 38.462 0.00 0.00 31.01 2.32
4841 5071 4.992688 TGTTCAAATCGTGGGATAATTGC 58.007 39.130 0.00 0.00 31.01 3.56
4842 5072 3.961477 TCAAATCGTGGGATAATTGCG 57.039 42.857 0.00 0.00 31.01 4.85
4843 5073 3.536570 TCAAATCGTGGGATAATTGCGA 58.463 40.909 0.00 0.00 36.02 5.10
4844 5074 3.942115 TCAAATCGTGGGATAATTGCGAA 59.058 39.130 0.00 0.00 35.20 4.70
4845 5075 3.963383 AATCGTGGGATAATTGCGAAC 57.037 42.857 0.00 0.00 35.20 3.95
4846 5076 1.282817 TCGTGGGATAATTGCGAACG 58.717 50.000 0.00 0.00 0.00 3.95
4847 5077 1.135053 TCGTGGGATAATTGCGAACGA 60.135 47.619 0.00 0.00 36.35 3.85
4848 5078 1.257936 CGTGGGATAATTGCGAACGAG 59.742 52.381 0.00 0.00 0.00 4.18
4849 5079 1.597663 GTGGGATAATTGCGAACGAGG 59.402 52.381 0.00 0.00 0.00 4.63
4850 5080 1.208535 TGGGATAATTGCGAACGAGGT 59.791 47.619 0.00 0.00 0.00 3.85
4851 5081 2.285977 GGGATAATTGCGAACGAGGTT 58.714 47.619 0.00 0.00 0.00 3.50
4852 5082 2.681344 GGGATAATTGCGAACGAGGTTT 59.319 45.455 0.00 0.00 0.00 3.27
4853 5083 3.486875 GGGATAATTGCGAACGAGGTTTG 60.487 47.826 0.00 0.00 0.00 2.93
4854 5084 3.126343 GGATAATTGCGAACGAGGTTTGT 59.874 43.478 0.00 0.00 30.22 2.83
4855 5085 4.330620 GGATAATTGCGAACGAGGTTTGTA 59.669 41.667 0.00 0.00 30.22 2.41
4856 5086 5.007332 GGATAATTGCGAACGAGGTTTGTAT 59.993 40.000 0.00 0.00 30.22 2.29
4857 5087 3.740044 ATTGCGAACGAGGTTTGTATG 57.260 42.857 0.00 0.00 30.22 2.39
4858 5088 2.157834 TGCGAACGAGGTTTGTATGT 57.842 45.000 0.00 0.00 30.22 2.29
4859 5089 2.485903 TGCGAACGAGGTTTGTATGTT 58.514 42.857 0.00 0.00 30.22 2.71
4860 5090 2.477375 TGCGAACGAGGTTTGTATGTTC 59.523 45.455 0.00 0.00 36.47 3.18
4862 5092 3.099732 GAACGAGGTTTGTATGTTCGC 57.900 47.619 0.00 0.00 34.84 4.70
4863 5093 2.450609 ACGAGGTTTGTATGTTCGCT 57.549 45.000 0.00 0.00 34.84 4.93
4864 5094 2.334838 ACGAGGTTTGTATGTTCGCTC 58.665 47.619 0.00 0.00 34.84 5.03
4865 5095 1.320555 CGAGGTTTGTATGTTCGCTCG 59.679 52.381 0.00 0.00 0.00 5.03
4866 5096 1.060698 GAGGTTTGTATGTTCGCTCGC 59.939 52.381 0.00 0.00 0.00 5.03
4913 5143 2.028930 GTCGATCAGGTCAGTTCAGGTT 60.029 50.000 0.00 0.00 0.00 3.50
4914 5144 2.029020 TCGATCAGGTCAGTTCAGGTTG 60.029 50.000 0.00 0.00 0.00 3.77
4915 5145 2.029020 CGATCAGGTCAGTTCAGGTTGA 60.029 50.000 0.00 0.00 0.00 3.18
4916 5146 3.594134 GATCAGGTCAGTTCAGGTTGAG 58.406 50.000 0.00 0.00 0.00 3.02
4930 5164 1.078918 TTGAGCACCTCATCGGCTG 60.079 57.895 0.00 0.00 40.39 4.85
4979 5214 7.383300 CAGTCATTCATCCAAGTTTTTCTTTCC 59.617 37.037 0.00 0.00 33.63 3.13
4985 5220 5.966853 TCCAAGTTTTTCTTTCCCCAAAT 57.033 34.783 0.00 0.00 33.63 2.32
4991 5226 5.369404 AGTTTTTCTTTCCCCAAATGTCCAT 59.631 36.000 0.00 0.00 0.00 3.41
4994 5229 2.654385 TCTTTCCCCAAATGTCCATCCT 59.346 45.455 0.00 0.00 0.00 3.24
5005 5240 0.249657 GTCCATCCTCTCGCATCACC 60.250 60.000 0.00 0.00 0.00 4.02
5006 5241 1.070445 CCATCCTCTCGCATCACCC 59.930 63.158 0.00 0.00 0.00 4.61
5007 5242 1.070445 CATCCTCTCGCATCACCCC 59.930 63.158 0.00 0.00 0.00 4.95
5008 5243 1.383109 ATCCTCTCGCATCACCCCA 60.383 57.895 0.00 0.00 0.00 4.96
5009 5244 0.982852 ATCCTCTCGCATCACCCCAA 60.983 55.000 0.00 0.00 0.00 4.12
5010 5245 1.153289 CCTCTCGCATCACCCCAAG 60.153 63.158 0.00 0.00 0.00 3.61
5011 5246 1.617018 CCTCTCGCATCACCCCAAGA 61.617 60.000 0.00 0.00 0.00 3.02
5012 5247 0.467384 CTCTCGCATCACCCCAAGAT 59.533 55.000 0.00 0.00 0.00 2.40
5013 5248 0.911769 TCTCGCATCACCCCAAGATT 59.088 50.000 0.00 0.00 0.00 2.40
5014 5249 1.281867 TCTCGCATCACCCCAAGATTT 59.718 47.619 0.00 0.00 0.00 2.17
5015 5250 2.094675 CTCGCATCACCCCAAGATTTT 58.905 47.619 0.00 0.00 0.00 1.82
5016 5251 2.493278 CTCGCATCACCCCAAGATTTTT 59.507 45.455 0.00 0.00 0.00 1.94
5110 5396 7.858583 ACTAATTTCAAGTAGGTTGTCGTTTC 58.141 34.615 0.00 0.00 37.43 2.78
5118 5404 8.339714 TCAAGTAGGTTGTCGTTTCTATTTTTG 58.660 33.333 0.00 0.00 37.43 2.44
5122 5408 9.166126 GTAGGTTGTCGTTTCTATTTTTGAAAG 57.834 33.333 0.00 0.00 34.58 2.62
5123 5409 7.768240 AGGTTGTCGTTTCTATTTTTGAAAGT 58.232 30.769 0.00 0.00 34.58 2.66
5146 5432 0.661020 AGGTTGTCGTTTTTGGCTCG 59.339 50.000 0.00 0.00 0.00 5.03
5191 5477 7.631717 AGCATCTCTAACCAATCCTTAAAAC 57.368 36.000 0.00 0.00 0.00 2.43
5193 5479 7.836183 AGCATCTCTAACCAATCCTTAAAACAT 59.164 33.333 0.00 0.00 0.00 2.71
5226 5514 4.513692 TCATTTTGAGGAGTTAACCACACG 59.486 41.667 0.88 0.00 30.95 4.49
5295 5668 3.829948 TCAAAAAGTAGCTACTCGACCG 58.170 45.455 26.21 13.89 34.99 4.79
5314 5687 0.744874 GATCGATCACCACTTCCCGA 59.255 55.000 20.52 0.00 0.00 5.14
5341 5740 1.794222 CGGAATGGAACCGCAAGAC 59.206 57.895 0.00 0.00 43.74 3.01
5407 5809 0.771755 ACCAAGGAAGAGGTTGGGAC 59.228 55.000 6.10 0.00 46.53 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.783621 GATGGCTGCAGCGGACCA 62.784 66.667 31.19 23.29 43.26 4.02
18 19 2.106566 GAAGGTGCAGAGAGGAGATGA 58.893 52.381 0.00 0.00 0.00 2.92
20 21 2.109774 CTGAAGGTGCAGAGAGGAGAT 58.890 52.381 0.00 0.00 38.14 2.75
25 31 1.447489 CGGCTGAAGGTGCAGAGAG 60.447 63.158 0.00 0.00 38.14 3.20
203 219 1.145945 AGGATCTCCAGCTCCATCGTA 59.854 52.381 0.00 0.00 38.89 3.43
474 502 1.790387 GAATCAGACAGCCACACGC 59.210 57.895 0.00 0.00 37.98 5.34
486 514 1.270305 ACACACCACCAGACGAATCAG 60.270 52.381 0.00 0.00 0.00 2.90
495 524 1.823470 CACACCCACACACCACCAG 60.823 63.158 0.00 0.00 0.00 4.00
504 533 1.679311 GCATCCTCTCACACCCACA 59.321 57.895 0.00 0.00 0.00 4.17
539 569 1.975837 CGCAATTTTACACGCCATGT 58.024 45.000 0.00 0.00 46.06 3.21
549 579 6.478344 CAGCCCTTTATTTATGCGCAATTTTA 59.522 34.615 17.11 0.00 0.00 1.52
766 797 7.126421 ACAATCTAGAGTGTGGAGGATTACATT 59.874 37.037 24.03 0.00 38.29 2.71
767 798 6.613271 ACAATCTAGAGTGTGGAGGATTACAT 59.387 38.462 24.03 0.00 38.29 2.29
768 799 5.958380 ACAATCTAGAGTGTGGAGGATTACA 59.042 40.000 24.03 0.00 38.29 2.41
769 800 6.472686 ACAATCTAGAGTGTGGAGGATTAC 57.527 41.667 24.03 0.00 38.29 1.89
779 810 6.237901 TGGTTTTATGCACAATCTAGAGTGT 58.762 36.000 19.65 19.65 40.58 3.55
780 811 6.741992 TGGTTTTATGCACAATCTAGAGTG 57.258 37.500 18.23 18.23 38.74 3.51
781 812 6.128282 CGTTGGTTTTATGCACAATCTAGAGT 60.128 38.462 0.00 0.00 0.00 3.24
782 813 6.092122 TCGTTGGTTTTATGCACAATCTAGAG 59.908 38.462 0.00 0.00 0.00 2.43
783 814 5.935206 TCGTTGGTTTTATGCACAATCTAGA 59.065 36.000 0.00 0.00 0.00 2.43
784 815 6.176975 TCGTTGGTTTTATGCACAATCTAG 57.823 37.500 0.00 0.00 0.00 2.43
785 816 6.561737 TTCGTTGGTTTTATGCACAATCTA 57.438 33.333 0.00 0.00 0.00 1.98
786 817 5.446143 TTCGTTGGTTTTATGCACAATCT 57.554 34.783 0.00 0.00 0.00 2.40
787 818 4.089923 GCTTCGTTGGTTTTATGCACAATC 59.910 41.667 0.00 0.00 0.00 2.67
788 819 3.987220 GCTTCGTTGGTTTTATGCACAAT 59.013 39.130 0.00 0.00 0.00 2.71
789 820 3.376540 GCTTCGTTGGTTTTATGCACAA 58.623 40.909 0.00 0.00 0.00 3.33
790 821 2.603412 CGCTTCGTTGGTTTTATGCACA 60.603 45.455 0.00 0.00 0.00 4.57
791 822 1.976045 CGCTTCGTTGGTTTTATGCAC 59.024 47.619 0.00 0.00 0.00 4.57
792 823 1.874231 TCGCTTCGTTGGTTTTATGCA 59.126 42.857 0.00 0.00 0.00 3.96
793 824 2.158841 TCTCGCTTCGTTGGTTTTATGC 59.841 45.455 0.00 0.00 0.00 3.14
794 825 4.394795 CTTCTCGCTTCGTTGGTTTTATG 58.605 43.478 0.00 0.00 0.00 1.90
795 826 3.120304 GCTTCTCGCTTCGTTGGTTTTAT 60.120 43.478 0.00 0.00 35.14 1.40
796 827 2.222445 GCTTCTCGCTTCGTTGGTTTTA 59.778 45.455 0.00 0.00 35.14 1.52
797 828 1.002792 GCTTCTCGCTTCGTTGGTTTT 60.003 47.619 0.00 0.00 35.14 2.43
798 829 0.586802 GCTTCTCGCTTCGTTGGTTT 59.413 50.000 0.00 0.00 35.14 3.27
799 830 2.235546 GCTTCTCGCTTCGTTGGTT 58.764 52.632 0.00 0.00 35.14 3.67
800 831 3.952811 GCTTCTCGCTTCGTTGGT 58.047 55.556 0.00 0.00 35.14 3.67
809 840 2.301577 ATTCACTGGTAGCTTCTCGC 57.698 50.000 0.00 0.00 39.57 5.03
810 841 4.116747 AGAATTCACTGGTAGCTTCTCG 57.883 45.455 8.44 0.00 0.00 4.04
811 842 5.703130 ACAAAGAATTCACTGGTAGCTTCTC 59.297 40.000 8.44 0.00 0.00 2.87
812 843 5.625150 ACAAAGAATTCACTGGTAGCTTCT 58.375 37.500 8.44 0.00 0.00 2.85
813 844 5.948992 ACAAAGAATTCACTGGTAGCTTC 57.051 39.130 8.44 0.00 0.00 3.86
814 845 6.096846 ACAAACAAAGAATTCACTGGTAGCTT 59.903 34.615 8.44 0.00 0.00 3.74
815 846 5.594317 ACAAACAAAGAATTCACTGGTAGCT 59.406 36.000 8.44 0.00 0.00 3.32
816 847 5.831997 ACAAACAAAGAATTCACTGGTAGC 58.168 37.500 8.44 0.00 0.00 3.58
817 848 7.254084 GCAAACAAACAAAGAATTCACTGGTAG 60.254 37.037 8.44 1.68 0.00 3.18
818 849 6.533367 GCAAACAAACAAAGAATTCACTGGTA 59.467 34.615 8.44 0.00 0.00 3.25
819 850 5.351189 GCAAACAAACAAAGAATTCACTGGT 59.649 36.000 8.44 0.00 0.00 4.00
820 851 5.581874 AGCAAACAAACAAAGAATTCACTGG 59.418 36.000 8.44 0.00 0.00 4.00
821 852 6.237915 GGAGCAAACAAACAAAGAATTCACTG 60.238 38.462 8.44 6.73 0.00 3.66
822 853 5.812127 GGAGCAAACAAACAAAGAATTCACT 59.188 36.000 8.44 0.00 0.00 3.41
823 854 5.580297 TGGAGCAAACAAACAAAGAATTCAC 59.420 36.000 8.44 0.00 0.00 3.18
824 855 5.728471 TGGAGCAAACAAACAAAGAATTCA 58.272 33.333 8.44 0.00 0.00 2.57
825 856 6.293027 CCATGGAGCAAACAAACAAAGAATTC 60.293 38.462 5.56 0.00 0.00 2.17
826 857 5.528320 CCATGGAGCAAACAAACAAAGAATT 59.472 36.000 5.56 0.00 0.00 2.17
827 858 5.058490 CCATGGAGCAAACAAACAAAGAAT 58.942 37.500 5.56 0.00 0.00 2.40
828 859 4.081198 ACCATGGAGCAAACAAACAAAGAA 60.081 37.500 21.47 0.00 0.00 2.52
829 860 3.450457 ACCATGGAGCAAACAAACAAAGA 59.550 39.130 21.47 0.00 0.00 2.52
830 861 3.795877 ACCATGGAGCAAACAAACAAAG 58.204 40.909 21.47 0.00 0.00 2.77
831 862 3.736433 CGACCATGGAGCAAACAAACAAA 60.736 43.478 21.47 0.00 0.00 2.83
832 863 2.223688 CGACCATGGAGCAAACAAACAA 60.224 45.455 21.47 0.00 0.00 2.83
833 864 1.336440 CGACCATGGAGCAAACAAACA 59.664 47.619 21.47 0.00 0.00 2.83
834 865 1.336755 ACGACCATGGAGCAAACAAAC 59.663 47.619 21.47 0.00 0.00 2.93
835 866 1.336440 CACGACCATGGAGCAAACAAA 59.664 47.619 21.47 0.00 0.00 2.83
836 867 0.950836 CACGACCATGGAGCAAACAA 59.049 50.000 21.47 0.00 0.00 2.83
837 868 0.179032 ACACGACCATGGAGCAAACA 60.179 50.000 21.47 0.00 0.00 2.83
838 869 0.238289 CACACGACCATGGAGCAAAC 59.762 55.000 21.47 1.52 0.00 2.93
839 870 0.107643 TCACACGACCATGGAGCAAA 59.892 50.000 21.47 0.00 0.00 3.68
840 871 0.324614 ATCACACGACCATGGAGCAA 59.675 50.000 21.47 0.00 0.00 3.91
841 872 0.108186 GATCACACGACCATGGAGCA 60.108 55.000 21.47 0.00 0.00 4.26
842 873 0.811616 GGATCACACGACCATGGAGC 60.812 60.000 21.47 9.10 0.00 4.70
843 874 0.826715 AGGATCACACGACCATGGAG 59.173 55.000 21.47 14.50 0.00 3.86
844 875 1.066215 CAAGGATCACACGACCATGGA 60.066 52.381 21.47 0.00 0.00 3.41
845 876 1.339055 ACAAGGATCACACGACCATGG 60.339 52.381 11.19 11.19 0.00 3.66
846 877 1.733912 CACAAGGATCACACGACCATG 59.266 52.381 0.00 0.00 0.00 3.66
847 878 1.623311 TCACAAGGATCACACGACCAT 59.377 47.619 0.00 0.00 0.00 3.55
848 879 1.044611 TCACAAGGATCACACGACCA 58.955 50.000 0.00 0.00 0.00 4.02
849 880 2.386661 ATCACAAGGATCACACGACC 57.613 50.000 0.00 0.00 0.00 4.79
850 881 3.067106 ACAATCACAAGGATCACACGAC 58.933 45.455 0.00 0.00 34.28 4.34
851 882 3.401033 ACAATCACAAGGATCACACGA 57.599 42.857 0.00 0.00 34.28 4.35
852 883 4.690748 ACTAACAATCACAAGGATCACACG 59.309 41.667 0.00 0.00 34.28 4.49
853 884 5.470098 ACACTAACAATCACAAGGATCACAC 59.530 40.000 0.00 0.00 34.28 3.82
854 885 5.469760 CACACTAACAATCACAAGGATCACA 59.530 40.000 0.00 0.00 34.28 3.58
855 886 5.470098 ACACACTAACAATCACAAGGATCAC 59.530 40.000 0.00 0.00 34.28 3.06
856 887 5.620206 ACACACTAACAATCACAAGGATCA 58.380 37.500 0.00 0.00 34.28 2.92
857 888 6.313905 CCTACACACTAACAATCACAAGGATC 59.686 42.308 0.00 0.00 34.28 3.36
858 889 6.173339 CCTACACACTAACAATCACAAGGAT 58.827 40.000 0.00 0.00 38.05 3.24
859 890 5.071250 ACCTACACACTAACAATCACAAGGA 59.929 40.000 0.00 0.00 0.00 3.36
860 891 5.305585 ACCTACACACTAACAATCACAAGG 58.694 41.667 0.00 0.00 0.00 3.61
861 892 6.260050 ACAACCTACACACTAACAATCACAAG 59.740 38.462 0.00 0.00 0.00 3.16
862 893 6.037720 CACAACCTACACACTAACAATCACAA 59.962 38.462 0.00 0.00 0.00 3.33
863 894 5.525745 CACAACCTACACACTAACAATCACA 59.474 40.000 0.00 0.00 0.00 3.58
864 895 5.049680 CCACAACCTACACACTAACAATCAC 60.050 44.000 0.00 0.00 0.00 3.06
865 896 5.060506 CCACAACCTACACACTAACAATCA 58.939 41.667 0.00 0.00 0.00 2.57
866 897 5.302360 TCCACAACCTACACACTAACAATC 58.698 41.667 0.00 0.00 0.00 2.67
867 898 5.298989 TCCACAACCTACACACTAACAAT 57.701 39.130 0.00 0.00 0.00 2.71
868 899 4.757019 TCCACAACCTACACACTAACAA 57.243 40.909 0.00 0.00 0.00 2.83
869 900 4.637276 CATCCACAACCTACACACTAACA 58.363 43.478 0.00 0.00 0.00 2.41
870 901 3.435671 GCATCCACAACCTACACACTAAC 59.564 47.826 0.00 0.00 0.00 2.34
871 902 3.326588 AGCATCCACAACCTACACACTAA 59.673 43.478 0.00 0.00 0.00 2.24
872 903 2.903784 AGCATCCACAACCTACACACTA 59.096 45.455 0.00 0.00 0.00 2.74
873 904 1.699634 AGCATCCACAACCTACACACT 59.300 47.619 0.00 0.00 0.00 3.55
874 905 1.806542 CAGCATCCACAACCTACACAC 59.193 52.381 0.00 0.00 0.00 3.82
875 906 1.881925 GCAGCATCCACAACCTACACA 60.882 52.381 0.00 0.00 0.00 3.72
876 907 0.804989 GCAGCATCCACAACCTACAC 59.195 55.000 0.00 0.00 0.00 2.90
877 908 0.399833 TGCAGCATCCACAACCTACA 59.600 50.000 0.00 0.00 0.00 2.74
878 909 1.533625 TTGCAGCATCCACAACCTAC 58.466 50.000 0.00 0.00 0.00 3.18
879 910 1.885887 GTTTGCAGCATCCACAACCTA 59.114 47.619 0.00 0.00 0.00 3.08
880 911 0.675633 GTTTGCAGCATCCACAACCT 59.324 50.000 0.00 0.00 0.00 3.50
881 912 0.675633 AGTTTGCAGCATCCACAACC 59.324 50.000 0.00 0.00 0.00 3.77
882 913 1.610522 AGAGTTTGCAGCATCCACAAC 59.389 47.619 0.00 0.00 0.00 3.32
883 914 1.881973 GAGAGTTTGCAGCATCCACAA 59.118 47.619 0.00 0.00 0.00 3.33
884 915 1.072806 AGAGAGTTTGCAGCATCCACA 59.927 47.619 0.00 0.00 0.00 4.17
885 916 1.736681 GAGAGAGTTTGCAGCATCCAC 59.263 52.381 0.00 0.00 0.00 4.02
886 917 1.627329 AGAGAGAGTTTGCAGCATCCA 59.373 47.619 0.00 0.00 0.00 3.41
887 918 2.399916 AGAGAGAGTTTGCAGCATCC 57.600 50.000 0.00 0.00 0.00 3.51
888 919 2.865551 GCTAGAGAGAGTTTGCAGCATC 59.134 50.000 0.00 0.00 0.00 3.91
889 920 2.419851 GGCTAGAGAGAGTTTGCAGCAT 60.420 50.000 0.00 0.00 0.00 3.79
890 921 1.066573 GGCTAGAGAGAGTTTGCAGCA 60.067 52.381 0.00 0.00 0.00 4.41
891 922 1.066573 TGGCTAGAGAGAGTTTGCAGC 60.067 52.381 0.00 0.00 0.00 5.25
892 923 3.118847 TCATGGCTAGAGAGAGTTTGCAG 60.119 47.826 0.00 0.00 0.00 4.41
893 924 2.833943 TCATGGCTAGAGAGAGTTTGCA 59.166 45.455 0.00 0.00 0.00 4.08
894 925 3.131933 TCTCATGGCTAGAGAGAGTTTGC 59.868 47.826 0.00 0.00 37.22 3.68
895 926 4.998671 TCTCATGGCTAGAGAGAGTTTG 57.001 45.455 0.00 0.00 37.22 2.93
903 934 7.041167 CGAGGATTATATCTCTCATGGCTAGAG 60.041 44.444 3.97 3.97 41.59 2.43
904 935 6.770303 CGAGGATTATATCTCTCATGGCTAGA 59.230 42.308 0.00 0.00 31.24 2.43
905 936 6.770303 TCGAGGATTATATCTCTCATGGCTAG 59.230 42.308 0.00 0.00 31.24 3.42
906 937 6.544197 GTCGAGGATTATATCTCTCATGGCTA 59.456 42.308 0.00 0.00 31.24 3.93
907 938 5.359576 GTCGAGGATTATATCTCTCATGGCT 59.640 44.000 0.00 0.00 31.24 4.75
908 939 5.451242 GGTCGAGGATTATATCTCTCATGGC 60.451 48.000 0.00 0.00 31.24 4.40
909 940 5.068460 GGGTCGAGGATTATATCTCTCATGG 59.932 48.000 0.00 0.00 31.24 3.66
910 941 5.890985 AGGGTCGAGGATTATATCTCTCATG 59.109 44.000 0.00 0.00 31.24 3.07
911 942 6.069088 AGAGGGTCGAGGATTATATCTCTCAT 60.069 42.308 0.00 0.00 31.24 2.90
912 943 5.251932 AGAGGGTCGAGGATTATATCTCTCA 59.748 44.000 0.00 0.00 31.24 3.27
913 944 5.751586 AGAGGGTCGAGGATTATATCTCTC 58.248 45.833 0.00 0.00 0.00 3.20
914 945 5.789574 AGAGGGTCGAGGATTATATCTCT 57.210 43.478 0.00 0.00 0.00 3.10
915 946 5.946972 TCAAGAGGGTCGAGGATTATATCTC 59.053 44.000 0.00 0.00 0.00 2.75
916 947 5.893500 TCAAGAGGGTCGAGGATTATATCT 58.106 41.667 0.00 0.00 0.00 1.98
936 967 0.039618 GAGACCCCCAAATGCCTCAA 59.960 55.000 0.00 0.00 0.00 3.02
948 979 1.003233 GGCTGTGAAGTGAGACCCC 60.003 63.158 0.00 0.00 0.00 4.95
949 980 1.374758 CGGCTGTGAAGTGAGACCC 60.375 63.158 0.00 0.00 0.00 4.46
989 1020 5.821470 CACACAGGAATCATGCTCTCTAATT 59.179 40.000 0.00 0.00 0.00 1.40
995 1026 1.681166 GGCACACAGGAATCATGCTCT 60.681 52.381 0.00 0.00 36.52 4.09
1053 1084 0.843309 TTCTGTCAACTGGCCAGGAA 59.157 50.000 35.42 23.75 0.00 3.36
1094 1125 5.147330 TGAAAGTTTTAGGATGAGAGCGA 57.853 39.130 0.00 0.00 0.00 4.93
1095 1126 5.163814 CCTTGAAAGTTTTAGGATGAGAGCG 60.164 44.000 10.66 0.00 0.00 5.03
1120 1151 2.731572 AGCCATCAAGGATGAAGGTTG 58.268 47.619 7.75 0.00 44.51 3.77
1167 1198 2.190578 CCTGGGAGCAATCGGGTC 59.809 66.667 0.00 0.00 43.35 4.46
1179 1210 2.231235 CTCCAAAATTCGGAAACCTGGG 59.769 50.000 12.61 4.70 30.33 4.45
1190 1221 5.256474 TCATCTCCAGGTTCTCCAAAATTC 58.744 41.667 0.00 0.00 35.89 2.17
1193 1224 3.560025 GCTCATCTCCAGGTTCTCCAAAA 60.560 47.826 0.00 0.00 35.89 2.44
1202 1233 1.588239 TCCATTGCTCATCTCCAGGT 58.412 50.000 0.00 0.00 0.00 4.00
1419 1450 4.762251 GCCTCCATGACTCAAACTAGTTTT 59.238 41.667 18.25 4.38 0.00 2.43
1464 1495 2.964209 AGAGTAAGCCTGCCTGCTATA 58.036 47.619 0.00 0.00 41.80 1.31
1473 1504 5.063880 ACACAACCTAAAAGAGTAAGCCTG 58.936 41.667 0.00 0.00 0.00 4.85
1480 1511 4.331717 CACGACAACACAACCTAAAAGAGT 59.668 41.667 0.00 0.00 0.00 3.24
1887 1922 9.502091 ACTTCTGCAATACTCATAAACTAACAA 57.498 29.630 0.00 0.00 0.00 2.83
1888 1923 9.502091 AACTTCTGCAATACTCATAAACTAACA 57.498 29.630 0.00 0.00 0.00 2.41
1889 1924 9.974750 GAACTTCTGCAATACTCATAAACTAAC 57.025 33.333 0.00 0.00 0.00 2.34
1970 2128 1.665599 GCGCAACAAAGCCTGCAAT 60.666 52.632 0.30 0.00 38.52 3.56
2011 2169 1.816835 TCTGTCAGGCAGGTTACTACG 59.183 52.381 1.12 0.00 45.08 3.51
2117 2276 3.483558 CGATCACTACACATCGTGACATG 59.516 47.826 0.24 0.00 42.32 3.21
2118 2277 3.377172 TCGATCACTACACATCGTGACAT 59.623 43.478 0.24 0.00 42.32 3.06
2119 2278 2.745281 TCGATCACTACACATCGTGACA 59.255 45.455 0.24 0.00 42.32 3.58
2124 2283 4.216366 ACATCTCGATCACTACACATCG 57.784 45.455 0.00 0.00 42.72 3.84
2270 2433 9.282569 GATCATTATATGAGCCTCATAATTCCC 57.717 37.037 17.84 2.30 42.05 3.97
2296 2459 4.315803 ACAGGTTGAAGATTGACTAACGG 58.684 43.478 0.00 0.00 0.00 4.44
2428 2591 0.743097 GCCAGGTGCAGATTCATTCC 59.257 55.000 0.00 0.00 40.77 3.01
2475 2638 7.441890 ACACCGTGTGATTGAAATGTTATTA 57.558 32.000 2.57 0.00 36.96 0.98
2481 2644 5.964887 AAAAACACCGTGTGATTGAAATG 57.035 34.783 4.57 0.00 36.96 2.32
2866 3029 5.419788 TCCAATCAAGATAATTGCTGCAAGT 59.580 36.000 20.72 20.16 35.30 3.16
3052 3216 7.740519 AAAATAAATACGAAATCAGCACAGC 57.259 32.000 0.00 0.00 0.00 4.40
3125 3289 5.495640 TCAATTTTTCCAGCCAAAACAGTT 58.504 33.333 0.00 0.00 0.00 3.16
3194 3358 8.798153 CAGAACTTTTCAAGTGTACACAAAATC 58.202 33.333 27.06 17.70 41.91 2.17
3244 3408 1.659211 GCCTACAAAACGCACAAGTCG 60.659 52.381 0.00 0.00 0.00 4.18
3260 3424 4.643795 GGCATGCTGTGAAGCCTA 57.356 55.556 18.92 0.00 43.70 3.93
3326 3490 7.601856 CAAGATGTAACAGAAAATAAAGGCCA 58.398 34.615 5.01 0.00 0.00 5.36
3427 3591 9.903682 TGTTACAGTAAAGTGTTAGTTAGCTAG 57.096 33.333 0.00 0.00 31.46 3.42
3608 3773 7.830739 AGTCCTGAAAATTTATTGCCAACTAG 58.169 34.615 0.00 0.00 0.00 2.57
3629 3794 8.911247 AAATGCGAGTCAATAAAATTAAGTCC 57.089 30.769 0.00 0.00 0.00 3.85
3635 3800 8.831715 AAAAGGAAATGCGAGTCAATAAAATT 57.168 26.923 0.00 0.00 0.00 1.82
3648 3813 4.083110 ACATCAGACTGAAAAGGAAATGCG 60.083 41.667 9.70 0.00 0.00 4.73
3851 4016 4.002906 AGCGTTCAACACTCCATAGAAA 57.997 40.909 0.00 0.00 0.00 2.52
3854 4019 2.159653 GCAAGCGTTCAACACTCCATAG 60.160 50.000 0.00 0.00 0.00 2.23
3893 4059 5.298276 TGGTAAAAACTCTTACTGCAACAGG 59.702 40.000 0.00 0.00 35.51 4.00
4001 4167 3.375782 ACAAGCAAATCAGAAACAGCC 57.624 42.857 0.00 0.00 0.00 4.85
4020 4186 3.971032 ACAGCAGTTTAGCTTGTCAAC 57.029 42.857 0.00 0.00 43.70 3.18
4100 4280 4.485163 GTTCACCAACAACTCATATTGGC 58.515 43.478 2.16 0.00 45.73 4.52
4107 4287 5.042463 TCAATAGGTTCACCAACAACTCA 57.958 39.130 0.00 0.00 38.89 3.41
4108 4288 5.063880 ACTCAATAGGTTCACCAACAACTC 58.936 41.667 0.00 0.00 38.89 3.01
4145 4325 4.810790 ACTAACAGGACTCTGAATGAACG 58.189 43.478 0.00 0.00 43.49 3.95
4155 4335 8.290325 CCAAATCAACTTAAACTAACAGGACTC 58.710 37.037 0.00 0.00 0.00 3.36
4373 4559 3.181469 GGTACATCGCTATCTGACCCAAA 60.181 47.826 0.00 0.00 0.00 3.28
4409 4595 9.083422 CCCTATTCTTCTTTCTTTCCTTTCTTT 57.917 33.333 0.00 0.00 0.00 2.52
4418 4604 4.906618 TCACGCCCTATTCTTCTTTCTTT 58.093 39.130 0.00 0.00 0.00 2.52
4430 4616 1.134670 GCAAGAGTTCTCACGCCCTAT 60.135 52.381 2.64 0.00 0.00 2.57
4433 4619 1.004440 AGCAAGAGTTCTCACGCCC 60.004 57.895 2.64 0.00 0.00 6.13
4434 4620 1.905922 GCAGCAAGAGTTCTCACGCC 61.906 60.000 2.64 0.00 0.00 5.68
4435 4621 0.948141 AGCAGCAAGAGTTCTCACGC 60.948 55.000 0.00 4.36 0.00 5.34
4436 4622 0.788995 CAGCAGCAAGAGTTCTCACG 59.211 55.000 0.00 0.00 0.00 4.35
4438 4624 0.761187 ACCAGCAGCAAGAGTTCTCA 59.239 50.000 0.00 0.00 0.00 3.27
4439 4625 1.889545 AACCAGCAGCAAGAGTTCTC 58.110 50.000 0.00 0.00 0.00 2.87
4440 4626 2.355010 AAACCAGCAGCAAGAGTTCT 57.645 45.000 0.00 0.00 0.00 3.01
4441 4627 2.878406 TGTAAACCAGCAGCAAGAGTTC 59.122 45.455 0.00 0.00 0.00 3.01
4442 4628 2.930950 TGTAAACCAGCAGCAAGAGTT 58.069 42.857 0.00 0.00 0.00 3.01
4444 4630 4.510038 AATTGTAAACCAGCAGCAAGAG 57.490 40.909 0.00 0.00 0.00 2.85
4445 4631 4.935352 AAATTGTAAACCAGCAGCAAGA 57.065 36.364 0.00 0.00 0.00 3.02
4446 4632 4.318974 GCAAAATTGTAAACCAGCAGCAAG 60.319 41.667 0.00 0.00 0.00 4.01
4448 4634 3.129871 GCAAAATTGTAAACCAGCAGCA 58.870 40.909 0.00 0.00 0.00 4.41
4449 4635 3.392882 AGCAAAATTGTAAACCAGCAGC 58.607 40.909 0.00 0.00 0.00 5.25
4450 4636 3.989817 GGAGCAAAATTGTAAACCAGCAG 59.010 43.478 0.00 0.00 0.00 4.24
4451 4637 3.386078 TGGAGCAAAATTGTAAACCAGCA 59.614 39.130 0.00 0.00 0.00 4.41
4452 4638 3.988819 TGGAGCAAAATTGTAAACCAGC 58.011 40.909 0.00 0.00 0.00 4.85
4453 4639 4.559153 CCTGGAGCAAAATTGTAAACCAG 58.441 43.478 0.00 0.00 41.95 4.00
4495 4705 1.071699 TGAAGTCCTGGTAAGTGGTGC 59.928 52.381 0.00 0.00 0.00 5.01
4496 4706 3.007940 TCATGAAGTCCTGGTAAGTGGTG 59.992 47.826 0.00 0.00 0.00 4.17
4497 4707 3.008049 GTCATGAAGTCCTGGTAAGTGGT 59.992 47.826 0.00 0.00 0.00 4.16
4498 4708 3.007940 TGTCATGAAGTCCTGGTAAGTGG 59.992 47.826 0.00 0.00 0.00 4.00
4500 4710 4.974645 TTGTCATGAAGTCCTGGTAAGT 57.025 40.909 0.00 0.00 0.00 2.24
4501 4711 6.039270 TGTTTTTGTCATGAAGTCCTGGTAAG 59.961 38.462 0.00 0.00 0.00 2.34
4502 4712 5.888724 TGTTTTTGTCATGAAGTCCTGGTAA 59.111 36.000 0.00 0.00 0.00 2.85
4504 4714 4.277476 TGTTTTTGTCATGAAGTCCTGGT 58.723 39.130 0.00 0.00 0.00 4.00
4505 4715 4.339247 ACTGTTTTTGTCATGAAGTCCTGG 59.661 41.667 0.00 0.00 0.00 4.45
4507 4717 5.765182 CCTACTGTTTTTGTCATGAAGTCCT 59.235 40.000 0.00 0.00 0.00 3.85
4508 4718 5.048713 CCCTACTGTTTTTGTCATGAAGTCC 60.049 44.000 0.00 0.00 0.00 3.85
4510 4720 5.690865 TCCCTACTGTTTTTGTCATGAAGT 58.309 37.500 0.00 0.00 0.00 3.01
4511 4721 5.997746 TCTCCCTACTGTTTTTGTCATGAAG 59.002 40.000 0.00 0.00 0.00 3.02
4512 4722 5.935945 TCTCCCTACTGTTTTTGTCATGAA 58.064 37.500 0.00 0.00 0.00 2.57
4513 4723 5.560722 TCTCCCTACTGTTTTTGTCATGA 57.439 39.130 0.00 0.00 0.00 3.07
4520 4738 7.154656 GCATGAATTTTCTCCCTACTGTTTTT 58.845 34.615 0.00 0.00 0.00 1.94
4521 4739 6.267471 TGCATGAATTTTCTCCCTACTGTTTT 59.733 34.615 0.00 0.00 0.00 2.43
4532 4750 4.219288 ACCCAAGTCTGCATGAATTTTCTC 59.781 41.667 0.00 0.00 29.76 2.87
4536 4754 3.499338 TCACCCAAGTCTGCATGAATTT 58.501 40.909 0.00 0.00 29.76 1.82
4553 4771 8.641498 AATATCCTATTGTTTCCATCATCACC 57.359 34.615 0.00 0.00 0.00 4.02
4618 4836 3.735746 GTGGCAATTGAAAACTACACAGC 59.264 43.478 10.34 0.00 0.00 4.40
4619 4837 4.037923 AGGTGGCAATTGAAAACTACACAG 59.962 41.667 10.34 0.00 0.00 3.66
4629 4847 3.571590 ACTAACCAAGGTGGCAATTGAA 58.428 40.909 10.34 0.00 42.67 2.69
4653 4871 5.335113 GCATCATTAAACAGTTGCACAGAGA 60.335 40.000 0.00 0.00 32.27 3.10
4747 4968 0.868602 CGGTACATAGCCGGTGAACG 60.869 60.000 1.90 0.00 44.98 3.95
4829 5059 1.597663 CCTCGTTCGCAATTATCCCAC 59.402 52.381 0.00 0.00 0.00 4.61
4831 5061 1.949465 ACCTCGTTCGCAATTATCCC 58.051 50.000 0.00 0.00 0.00 3.85
4833 5063 4.336532 ACAAACCTCGTTCGCAATTATC 57.663 40.909 0.00 0.00 0.00 1.75
4834 5064 5.353123 ACATACAAACCTCGTTCGCAATTAT 59.647 36.000 0.00 0.00 0.00 1.28
4836 5066 3.500680 ACATACAAACCTCGTTCGCAATT 59.499 39.130 0.00 0.00 0.00 2.32
4837 5067 3.071479 ACATACAAACCTCGTTCGCAAT 58.929 40.909 0.00 0.00 0.00 3.56
4838 5068 2.485903 ACATACAAACCTCGTTCGCAA 58.514 42.857 0.00 0.00 0.00 4.85
4839 5069 2.157834 ACATACAAACCTCGTTCGCA 57.842 45.000 0.00 0.00 0.00 5.10
4840 5070 3.099732 GAACATACAAACCTCGTTCGC 57.900 47.619 0.00 0.00 0.00 4.70
4842 5072 2.735134 AGCGAACATACAAACCTCGTTC 59.265 45.455 0.00 0.00 34.10 3.95
4843 5073 2.735134 GAGCGAACATACAAACCTCGTT 59.265 45.455 0.00 0.00 32.23 3.85
4844 5074 2.334838 GAGCGAACATACAAACCTCGT 58.665 47.619 0.00 0.00 32.23 4.18
4845 5075 1.320555 CGAGCGAACATACAAACCTCG 59.679 52.381 0.00 0.00 35.46 4.63
4846 5076 1.060698 GCGAGCGAACATACAAACCTC 59.939 52.381 0.00 0.00 0.00 3.85
4847 5077 1.076332 GCGAGCGAACATACAAACCT 58.924 50.000 0.00 0.00 0.00 3.50
4848 5078 0.793861 TGCGAGCGAACATACAAACC 59.206 50.000 0.00 0.00 0.00 3.27
4849 5079 1.724623 TCTGCGAGCGAACATACAAAC 59.275 47.619 0.00 0.00 0.00 2.93
4850 5080 1.992667 CTCTGCGAGCGAACATACAAA 59.007 47.619 0.00 0.00 0.00 2.83
4851 5081 1.629013 CTCTGCGAGCGAACATACAA 58.371 50.000 0.00 0.00 0.00 2.41
4852 5082 0.179137 CCTCTGCGAGCGAACATACA 60.179 55.000 0.00 0.00 0.00 2.29
4853 5083 0.100682 TCCTCTGCGAGCGAACATAC 59.899 55.000 0.00 0.00 0.00 2.39
4854 5084 0.815095 TTCCTCTGCGAGCGAACATA 59.185 50.000 0.00 0.00 0.00 2.29
4855 5085 0.176680 ATTCCTCTGCGAGCGAACAT 59.823 50.000 0.00 0.00 0.00 2.71
4856 5086 0.737367 CATTCCTCTGCGAGCGAACA 60.737 55.000 0.00 0.00 0.00 3.18
4857 5087 2.002127 CATTCCTCTGCGAGCGAAC 58.998 57.895 0.00 0.00 0.00 3.95
4858 5088 1.811266 GCATTCCTCTGCGAGCGAA 60.811 57.895 0.00 6.17 31.49 4.70
4859 5089 2.202797 GCATTCCTCTGCGAGCGA 60.203 61.111 0.00 0.00 31.49 4.93
4860 5090 2.202851 AGCATTCCTCTGCGAGCG 60.203 61.111 0.00 0.00 46.86 5.03
4861 5091 1.886777 GGAGCATTCCTCTGCGAGC 60.887 63.158 0.00 0.00 46.86 5.03
4862 5092 1.227497 GGGAGCATTCCTCTGCGAG 60.227 63.158 0.00 0.00 46.86 5.03
4863 5093 2.735772 GGGGAGCATTCCTCTGCGA 61.736 63.158 0.00 0.00 46.86 5.10
4864 5094 2.203126 GGGGAGCATTCCTCTGCG 60.203 66.667 0.00 0.00 46.86 5.18
4865 5095 0.750911 CTTGGGGAGCATTCCTCTGC 60.751 60.000 0.00 0.00 45.01 4.26
4866 5096 3.491208 CTTGGGGAGCATTCCTCTG 57.509 57.895 0.00 0.00 45.01 3.35
4891 5121 1.468224 CCTGAACTGACCTGATCGACG 60.468 57.143 0.00 0.00 0.00 5.12
4913 5143 2.580815 CAGCCGATGAGGTGCTCA 59.419 61.111 0.00 0.00 44.99 4.26
4914 5144 2.894387 GCAGCCGATGAGGTGCTC 60.894 66.667 8.36 0.00 43.70 4.26
4915 5145 3.397439 AGCAGCCGATGAGGTGCT 61.397 61.111 12.09 12.09 45.74 4.40
4916 5146 2.437359 AAGCAGCCGATGAGGTGC 60.437 61.111 7.59 7.59 43.03 5.01
4930 5164 3.340814 TCTCATCAGTTGGAAGGAAGC 57.659 47.619 0.00 0.00 0.00 3.86
4958 5192 5.606329 TGGGGAAAGAAAAACTTGGATGAAT 59.394 36.000 0.00 0.00 38.98 2.57
4979 5214 1.959042 CGAGAGGATGGACATTTGGG 58.041 55.000 0.00 0.00 0.00 4.12
4985 5220 0.461548 GTGATGCGAGAGGATGGACA 59.538 55.000 0.00 0.00 44.47 4.02
4991 5226 1.612146 TTGGGGTGATGCGAGAGGA 60.612 57.895 0.00 0.00 0.00 3.71
4994 5229 0.911769 AATCTTGGGGTGATGCGAGA 59.088 50.000 0.00 0.00 0.00 4.04
5025 5260 5.127682 AGAAATAAAATCTGGGGTGATGCAC 59.872 40.000 0.00 0.00 0.00 4.57
5026 5261 5.271598 AGAAATAAAATCTGGGGTGATGCA 58.728 37.500 0.00 0.00 0.00 3.96
5027 5262 5.221322 GGAGAAATAAAATCTGGGGTGATGC 60.221 44.000 0.00 0.00 0.00 3.91
5028 5263 5.893255 TGGAGAAATAAAATCTGGGGTGATG 59.107 40.000 0.00 0.00 0.00 3.07
5029 5264 6.091076 TGGAGAAATAAAATCTGGGGTGAT 57.909 37.500 0.00 0.00 0.00 3.06
5030 5265 5.528600 TGGAGAAATAAAATCTGGGGTGA 57.471 39.130 0.00 0.00 0.00 4.02
5031 5266 5.716703 AGTTGGAGAAATAAAATCTGGGGTG 59.283 40.000 0.00 0.00 0.00 4.61
5032 5267 5.903923 AGTTGGAGAAATAAAATCTGGGGT 58.096 37.500 0.00 0.00 0.00 4.95
5069 5306 9.586732 TTGAAATTAGTAGGCCTTATGCAATAT 57.413 29.630 12.58 0.00 43.89 1.28
5103 5389 9.166126 CCTACAACTTTCAAAAATAGAAACGAC 57.834 33.333 0.00 0.00 32.09 4.34
5110 5396 8.126700 ACGACAACCTACAACTTTCAAAAATAG 58.873 33.333 0.00 0.00 0.00 1.73
5118 5404 5.513849 CCAAAAACGACAACCTACAACTTTC 59.486 40.000 0.00 0.00 0.00 2.62
5122 5408 3.110358 GCCAAAAACGACAACCTACAAC 58.890 45.455 0.00 0.00 0.00 3.32
5123 5409 3.018149 AGCCAAAAACGACAACCTACAA 58.982 40.909 0.00 0.00 0.00 2.41
5226 5514 7.010275 CCTTTAACGGTTTAAGAGATCAGCTAC 59.990 40.741 18.31 0.00 0.00 3.58
5295 5668 0.744874 TCGGGAAGTGGTGATCGATC 59.255 55.000 18.72 18.72 0.00 3.69
5299 5672 1.810030 GCGTCGGGAAGTGGTGATC 60.810 63.158 0.00 0.00 0.00 2.92
5300 5673 2.264794 GCGTCGGGAAGTGGTGAT 59.735 61.111 0.00 0.00 0.00 3.06
5407 5809 1.689959 GGCTCGAAGCATGTTGTTTG 58.310 50.000 8.71 0.00 44.75 2.93
5411 5813 2.099062 GCGGCTCGAAGCATGTTG 59.901 61.111 8.71 0.00 44.75 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.