Multiple sequence alignment - TraesCS6D01G355300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G355300 chr6D 100.000 2240 0 0 1 2240 450135897 450138136 0.000000e+00 4137.0
1 TraesCS6D01G355300 chr6D 82.136 1058 81 57 299 1282 450164318 450165341 0.000000e+00 808.0
2 TraesCS6D01G355300 chr6B 87.454 1363 89 40 236 1545 682587798 682589131 0.000000e+00 1495.0
3 TraesCS6D01G355300 chr6B 82.881 590 47 33 729 1282 682655984 682656555 4.330000e-132 481.0
4 TraesCS6D01G355300 chr6B 80.292 685 71 29 1542 2182 682589159 682589823 2.030000e-125 459.0
5 TraesCS6D01G355300 chr6B 85.145 276 22 13 341 608 682655528 682655792 4.740000e-67 265.0
6 TraesCS6D01G355300 chr6A 84.306 1319 75 53 316 1545 595647710 595648985 0.000000e+00 1168.0
7 TraesCS6D01G355300 chr6A 82.108 1034 78 49 316 1282 595658358 595659351 0.000000e+00 785.0
8 TraesCS6D01G355300 chr6A 82.421 694 62 31 1543 2182 595649014 595649701 3.250000e-153 551.0
9 TraesCS6D01G355300 chr6A 91.905 210 12 4 1 205 141857209 141857000 2.810000e-74 289.0
10 TraesCS6D01G355300 chr6A 79.412 204 24 10 60 245 101992460 101992257 6.490000e-26 128.0
11 TraesCS6D01G355300 chr6A 88.298 94 4 2 322 411 595647389 595647479 3.040000e-19 106.0
12 TraesCS6D01G355300 chr6A 87.097 93 7 2 1711 1799 39149009 39149100 1.420000e-17 100.0
13 TraesCS6D01G355300 chr2B 85.932 263 18 7 1 244 11439774 11439512 1.710000e-66 263.0
14 TraesCS6D01G355300 chr2B 86.517 89 7 2 1715 1799 8560854 8560767 2.370000e-15 93.5
15 TraesCS6D01G355300 chr2B 100.000 40 0 0 2180 2219 784978432 784978471 8.580000e-10 75.0
16 TraesCS6D01G355300 chr2B 100.000 39 0 0 2180 2218 64232566 64232604 3.090000e-09 73.1
17 TraesCS6D01G355300 chr2B 97.500 40 1 0 2179 2218 64608666 64608627 3.990000e-08 69.4
18 TraesCS6D01G355300 chr2B 100.000 37 0 0 2179 2215 64662641 64662677 3.990000e-08 69.4
19 TraesCS6D01G355300 chr2B 97.500 40 1 0 2179 2218 64689776 64689737 3.990000e-08 69.4
20 TraesCS6D01G355300 chr2B 95.000 40 2 0 2179 2218 64604271 64604232 1.860000e-06 63.9
21 TraesCS6D01G355300 chr7D 80.233 258 24 15 1 242 405889936 405889690 3.830000e-38 169.0
22 TraesCS6D01G355300 chr2D 78.866 194 27 7 60 239 263521985 263521792 3.910000e-23 119.0
23 TraesCS6D01G355300 chr7B 87.500 88 6 2 1716 1799 667205423 667205509 1.830000e-16 97.1
24 TraesCS6D01G355300 chr5B 85.870 92 7 3 1712 1799 136416781 136416692 2.370000e-15 93.5
25 TraesCS6D01G355300 chr5A 86.517 89 7 2 1715 1799 322888525 322888612 2.370000e-15 93.5
26 TraesCS6D01G355300 chr3B 86.517 89 7 2 1715 1799 10620106 10620019 2.370000e-15 93.5
27 TraesCS6D01G355300 chr3B 86.517 89 6 3 1715 1799 687623166 687623252 2.370000e-15 93.5
28 TraesCS6D01G355300 chr4A 84.536 97 9 3 1708 1799 673450062 673450157 8.520000e-15 91.6
29 TraesCS6D01G355300 chr1B 82.243 107 8 4 145 240 456749826 456749932 5.130000e-12 82.4
30 TraesCS6D01G355300 chr1B 85.938 64 6 1 2180 2240 624694443 624694506 5.160000e-07 65.8
31 TraesCS6D01G355300 chr7A 97.500 40 0 1 2180 2219 461803414 461803452 1.440000e-07 67.6
32 TraesCS6D01G355300 chrUn 85.075 67 4 1 2180 2240 17536178 17536244 1.860000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G355300 chr6D 450135897 450138136 2239 False 4137.000000 4137 100.000000 1 2240 1 chr6D.!!$F1 2239
1 TraesCS6D01G355300 chr6D 450164318 450165341 1023 False 808.000000 808 82.136000 299 1282 1 chr6D.!!$F2 983
2 TraesCS6D01G355300 chr6B 682587798 682589823 2025 False 977.000000 1495 83.873000 236 2182 2 chr6B.!!$F1 1946
3 TraesCS6D01G355300 chr6B 682655528 682656555 1027 False 373.000000 481 84.013000 341 1282 2 chr6B.!!$F2 941
4 TraesCS6D01G355300 chr6A 595658358 595659351 993 False 785.000000 785 82.108000 316 1282 1 chr6A.!!$F2 966
5 TraesCS6D01G355300 chr6A 595647389 595649701 2312 False 608.333333 1168 85.008333 316 2182 3 chr6A.!!$F3 1866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.118547 AGGTAAGGCCCAGGTACAGT 59.881 55.0 0.0 0.0 38.26 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 2103 0.037232 GCTAGTTCCACACCTTCGCT 60.037 55.0 0.0 0.0 0.0 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.580059 CAAGAGGTAAGGCCCAGGTA 58.420 55.000 0.00 0.00 38.26 3.08
22 23 0.831307 GAGGTAAGGCCCAGGTACAG 59.169 60.000 0.00 0.00 38.26 2.74
23 24 0.118547 AGGTAAGGCCCAGGTACAGT 59.881 55.000 0.00 0.00 38.26 3.55
24 25 1.363629 AGGTAAGGCCCAGGTACAGTA 59.636 52.381 0.00 0.00 38.26 2.74
25 26 1.483827 GGTAAGGCCCAGGTACAGTAC 59.516 57.143 0.00 1.59 0.00 2.73
26 27 2.464782 GTAAGGCCCAGGTACAGTACT 58.535 52.381 10.62 0.00 0.00 2.73
27 28 2.040342 AAGGCCCAGGTACAGTACTT 57.960 50.000 10.62 0.00 0.00 2.24
28 29 1.569653 AGGCCCAGGTACAGTACTTC 58.430 55.000 10.62 0.00 0.00 3.01
29 30 1.078989 AGGCCCAGGTACAGTACTTCT 59.921 52.381 10.62 0.00 0.00 2.85
30 31 1.907255 GGCCCAGGTACAGTACTTCTT 59.093 52.381 10.62 0.00 0.00 2.52
31 32 2.305052 GGCCCAGGTACAGTACTTCTTT 59.695 50.000 10.62 0.00 0.00 2.52
32 33 3.244805 GGCCCAGGTACAGTACTTCTTTT 60.245 47.826 10.62 0.00 0.00 2.27
33 34 4.019950 GGCCCAGGTACAGTACTTCTTTTA 60.020 45.833 10.62 0.00 0.00 1.52
34 35 5.338953 GGCCCAGGTACAGTACTTCTTTTAT 60.339 44.000 10.62 0.00 0.00 1.40
35 36 6.126968 GGCCCAGGTACAGTACTTCTTTTATA 60.127 42.308 10.62 0.00 0.00 0.98
38 39 9.901172 CCCAGGTACAGTACTTCTTTTATATTT 57.099 33.333 10.62 0.00 0.00 1.40
74 75 2.067365 AAAACTGACAAGTGGGACCC 57.933 50.000 2.45 2.45 36.51 4.46
75 76 0.923358 AAACTGACAAGTGGGACCCA 59.077 50.000 9.95 9.95 36.51 4.51
87 88 2.112297 GACCCACCCGCAAGTCAA 59.888 61.111 0.00 0.00 0.00 3.18
89 90 1.076632 ACCCACCCGCAAGTCAAAA 60.077 52.632 0.00 0.00 0.00 2.44
90 91 1.362355 CCCACCCGCAAGTCAAAAC 59.638 57.895 0.00 0.00 0.00 2.43
92 93 1.388065 CCACCCGCAAGTCAAAACCA 61.388 55.000 0.00 0.00 0.00 3.67
94 95 1.007387 CCCGCAAGTCAAAACCAGC 60.007 57.895 0.00 0.00 0.00 4.85
96 97 0.314935 CCGCAAGTCAAAACCAGCAT 59.685 50.000 0.00 0.00 0.00 3.79
97 98 1.269726 CCGCAAGTCAAAACCAGCATT 60.270 47.619 0.00 0.00 0.00 3.56
104 105 1.340889 TCAAAACCAGCATTGACCAGC 59.659 47.619 0.00 0.00 30.94 4.85
107 108 1.181098 AACCAGCATTGACCAGCACC 61.181 55.000 0.00 0.00 0.00 5.01
110 111 1.151221 AGCATTGACCAGCACCACA 59.849 52.632 0.00 0.00 0.00 4.17
112 113 0.171903 GCATTGACCAGCACCACATC 59.828 55.000 0.00 0.00 0.00 3.06
113 114 1.536940 CATTGACCAGCACCACATCA 58.463 50.000 0.00 0.00 0.00 3.07
114 115 1.471287 CATTGACCAGCACCACATCAG 59.529 52.381 0.00 0.00 0.00 2.90
115 116 0.890542 TTGACCAGCACCACATCAGC 60.891 55.000 0.00 0.00 0.00 4.26
116 117 1.002868 GACCAGCACCACATCAGCT 60.003 57.895 0.00 0.00 39.63 4.24
119 120 2.433004 AGCACCACATCAGCTGCA 59.567 55.556 9.47 0.00 37.20 4.41
120 121 1.228337 AGCACCACATCAGCTGCAA 60.228 52.632 9.47 0.00 37.20 4.08
121 122 1.211969 GCACCACATCAGCTGCAAG 59.788 57.895 9.47 3.46 0.00 4.01
122 123 1.521450 GCACCACATCAGCTGCAAGT 61.521 55.000 9.47 4.16 35.30 3.16
123 124 0.520404 CACCACATCAGCTGCAAGTC 59.480 55.000 9.47 0.00 35.30 3.01
124 125 0.607489 ACCACATCAGCTGCAAGTCC 60.607 55.000 9.47 0.00 35.30 3.85
125 126 0.607217 CCACATCAGCTGCAAGTCCA 60.607 55.000 9.47 0.00 35.30 4.02
126 127 0.803117 CACATCAGCTGCAAGTCCAG 59.197 55.000 9.47 0.00 35.30 3.86
130 131 2.346766 TCAGCTGCAAGTCCAGAAAA 57.653 45.000 9.47 0.00 34.77 2.29
131 132 1.949525 TCAGCTGCAAGTCCAGAAAAC 59.050 47.619 9.47 0.00 34.77 2.43
132 133 1.000938 CAGCTGCAAGTCCAGAAAACC 60.001 52.381 0.00 0.00 34.77 3.27
133 134 1.032014 GCTGCAAGTCCAGAAAACCA 58.968 50.000 0.00 0.00 34.77 3.67
134 135 1.269257 GCTGCAAGTCCAGAAAACCAC 60.269 52.381 0.00 0.00 34.77 4.16
135 136 1.338020 CTGCAAGTCCAGAAAACCACC 59.662 52.381 0.00 0.00 34.77 4.61
138 139 1.681264 CAAGTCCAGAAAACCACCCAC 59.319 52.381 0.00 0.00 0.00 4.61
139 140 0.179029 AGTCCAGAAAACCACCCACG 60.179 55.000 0.00 0.00 0.00 4.94
140 141 1.149627 TCCAGAAAACCACCCACGG 59.850 57.895 0.00 0.00 0.00 4.94
141 142 1.901464 CCAGAAAACCACCCACGGG 60.901 63.158 0.00 0.00 42.03 5.28
166 167 5.793030 TTTTTGTCCGTTATGGGATTGTT 57.207 34.783 0.00 0.00 38.61 2.83
167 168 5.793030 TTTTGTCCGTTATGGGATTGTTT 57.207 34.783 0.00 0.00 38.61 2.83
170 171 4.519213 TGTCCGTTATGGGATTGTTTAGG 58.481 43.478 0.00 0.00 38.61 2.69
171 172 3.881089 GTCCGTTATGGGATTGTTTAGGG 59.119 47.826 0.00 0.00 38.61 3.53
172 173 3.117813 TCCGTTATGGGATTGTTTAGGGG 60.118 47.826 0.00 0.00 38.76 4.79
173 174 3.219281 CGTTATGGGATTGTTTAGGGGG 58.781 50.000 0.00 0.00 0.00 5.40
174 175 3.372241 CGTTATGGGATTGTTTAGGGGGT 60.372 47.826 0.00 0.00 0.00 4.95
175 176 4.141436 CGTTATGGGATTGTTTAGGGGGTA 60.141 45.833 0.00 0.00 0.00 3.69
176 177 5.631953 CGTTATGGGATTGTTTAGGGGGTAA 60.632 44.000 0.00 0.00 0.00 2.85
178 179 2.583566 TGGGATTGTTTAGGGGGTAAGG 59.416 50.000 0.00 0.00 0.00 2.69
181 182 3.270169 GGATTGTTTAGGGGGTAAGGGAA 59.730 47.826 0.00 0.00 0.00 3.97
182 183 3.812611 TTGTTTAGGGGGTAAGGGAAC 57.187 47.619 0.00 0.00 0.00 3.62
215 216 5.538082 TCAGGGGGTAATAAATTTGTCCA 57.462 39.130 0.00 0.00 0.00 4.02
216 217 5.515106 TCAGGGGGTAATAAATTTGTCCAG 58.485 41.667 0.00 0.00 0.00 3.86
217 218 4.649218 CAGGGGGTAATAAATTTGTCCAGG 59.351 45.833 0.00 0.00 0.00 4.45
219 220 4.573303 GGGGGTAATAAATTTGTCCAGGGT 60.573 45.833 0.00 0.00 0.00 4.34
221 222 5.831525 GGGGTAATAAATTTGTCCAGGGTAG 59.168 44.000 0.00 0.00 0.00 3.18
223 224 7.366732 GGGGTAATAAATTTGTCCAGGGTAGTA 60.367 40.741 0.00 0.00 0.00 1.82
225 226 9.465199 GGTAATAAATTTGTCCAGGGTAGTAAA 57.535 33.333 0.00 0.00 0.00 2.01
230 231 5.586155 TTTGTCCAGGGTAGTAAAATGGA 57.414 39.130 0.00 0.00 37.71 3.41
231 232 5.789574 TTGTCCAGGGTAGTAAAATGGAT 57.210 39.130 0.00 0.00 41.81 3.41
233 234 6.147437 TGTCCAGGGTAGTAAAATGGATTT 57.853 37.500 0.00 0.00 41.81 2.17
234 235 6.557568 TGTCCAGGGTAGTAAAATGGATTTT 58.442 36.000 3.02 3.02 41.81 1.82
272 273 3.554337 GCCATGGCATGATGAAAAGATCC 60.554 47.826 32.08 0.00 41.49 3.36
314 315 7.665559 ACAAATACTGCTCATTTTTGGACTAGA 59.334 33.333 0.00 0.00 32.85 2.43
346 354 1.998285 TTCGTCGAGAATGCATGCG 59.002 52.632 14.09 5.18 33.14 4.73
413 430 2.682856 CCGTTTCTGGAGAGAGAGAGAG 59.317 54.545 0.00 0.00 0.00 3.20
414 431 3.605634 CGTTTCTGGAGAGAGAGAGAGA 58.394 50.000 0.00 0.00 0.00 3.10
415 432 3.374058 CGTTTCTGGAGAGAGAGAGAGAC 59.626 52.174 0.00 0.00 0.00 3.36
426 443 3.198635 AGAGAGAGAGACTGAGAGACTGG 59.801 52.174 0.00 0.00 0.00 4.00
608 636 3.509967 TGTACACTGTACACATCCTCCAG 59.490 47.826 16.61 0.00 0.00 3.86
609 637 1.276421 ACACTGTACACATCCTCCAGC 59.724 52.381 0.00 0.00 0.00 4.85
610 638 0.905357 ACTGTACACATCCTCCAGCC 59.095 55.000 0.00 0.00 0.00 4.85
611 639 0.179000 CTGTACACATCCTCCAGCCC 59.821 60.000 0.00 0.00 0.00 5.19
612 640 0.252696 TGTACACATCCTCCAGCCCT 60.253 55.000 0.00 0.00 0.00 5.19
713 784 3.056938 ACTCTCGCGCGTCTCCTT 61.057 61.111 30.98 7.64 0.00 3.36
750 852 1.554617 AGCCTTCTTCTTCCTCTGCTC 59.445 52.381 0.00 0.00 0.00 4.26
846 969 5.964758 TGCATTTTCACAATCCATCCTTAC 58.035 37.500 0.00 0.00 0.00 2.34
874 997 5.649782 TTCTTGCCATCTTTCTTGAATCC 57.350 39.130 0.00 0.00 0.00 3.01
879 1002 3.631227 GCCATCTTTCTTGAATCCTGAGG 59.369 47.826 0.00 0.00 0.00 3.86
897 1020 0.179070 GGGCTGCTAGGTGCTAGTTC 60.179 60.000 0.00 0.00 43.37 3.01
983 1118 0.890542 GTGAATGTGCTGCAGGTGGA 60.891 55.000 17.12 0.00 0.00 4.02
1242 1418 2.996395 CAGCAGCCCCAGTGATCT 59.004 61.111 0.00 0.00 0.00 2.75
1282 1462 0.950555 GTGCATGCAGTCGTGGAAGA 60.951 55.000 23.41 0.00 31.23 2.87
1287 1467 0.827925 TGCAGTCGTGGAAGAGGAGT 60.828 55.000 0.00 0.00 0.00 3.85
1288 1468 1.174783 GCAGTCGTGGAAGAGGAGTA 58.825 55.000 0.00 0.00 0.00 2.59
1390 1581 7.701501 CCTAGTGGACGATTTAGTTCTACTTTC 59.298 40.741 0.00 0.00 34.57 2.62
1415 1606 6.100668 GGTTGTTTAGCTAGAGGAAGTAGTG 58.899 44.000 0.00 0.00 0.00 2.74
1441 1635 1.675641 CAGCTAGCGCTTTTGGGGT 60.676 57.895 18.68 4.01 46.47 4.95
1485 1680 1.957177 TGTGGCGCCATTTCTTGTTTA 59.043 42.857 35.23 0.19 0.00 2.01
1494 1689 6.381801 CGCCATTTCTTGTTTAAGTCTGATT 58.618 36.000 0.00 0.00 35.38 2.57
1498 1698 6.959639 TTTCTTGTTTAAGTCTGATTGCCT 57.040 33.333 0.00 0.00 35.38 4.75
1538 1748 5.174761 CGTAGCGTACTAGACTACCAGTAAG 59.825 48.000 0.00 0.00 34.14 2.34
1580 1821 7.481275 AATGTGAACAATTTGCGAAAATCTT 57.519 28.000 0.73 0.00 0.00 2.40
1607 1851 2.004017 ACAAACACGGCGTGTATATGG 58.996 47.619 41.44 27.45 46.79 2.74
1640 1884 1.127567 CCAGACAGGGGTGTGAAGGA 61.128 60.000 0.00 0.00 40.57 3.36
1644 1888 1.975680 GACAGGGGTGTGAAGGAGTTA 59.024 52.381 0.00 0.00 0.00 2.24
1652 1896 5.429130 GGGTGTGAAGGAGTTATAGAAAGG 58.571 45.833 0.00 0.00 0.00 3.11
1665 1909 0.178891 AGAAAGGGAGGCTCCTGACA 60.179 55.000 31.39 0.00 37.20 3.58
1682 1926 8.786898 GCTCCTGACAGAAATATTGCAATAATA 58.213 33.333 22.37 2.83 0.00 0.98
1704 1948 0.038526 ACACTTACCGACTGAAGGCG 60.039 55.000 0.00 0.00 0.00 5.52
1706 1950 0.038526 ACTTACCGACTGAAGGCGTG 60.039 55.000 4.63 0.00 0.00 5.34
1790 2093 6.270231 AGGAGAATAGAGTTTGTTACACCACT 59.730 38.462 0.00 0.00 0.00 4.00
1800 2103 7.380536 AGTTTGTTACACCACTCATATTACGA 58.619 34.615 0.00 0.00 0.00 3.43
1807 2110 3.243434 ACCACTCATATTACGAGCGAAGG 60.243 47.826 0.00 0.00 33.58 3.46
1808 2111 3.243434 CCACTCATATTACGAGCGAAGGT 60.243 47.826 0.00 0.00 46.54 3.50
1827 2130 2.486548 GGTGTGGAACTAGCTGTTTGGA 60.487 50.000 0.00 0.00 39.30 3.53
1833 2136 3.403038 GAACTAGCTGTTTGGAGCTCAA 58.597 45.455 17.19 0.00 46.85 3.02
1890 2195 0.111061 TTGTTCTGCCACATCAGCCT 59.889 50.000 0.00 0.00 34.19 4.58
1891 2196 0.111061 TGTTCTGCCACATCAGCCTT 59.889 50.000 0.00 0.00 34.19 4.35
1892 2197 0.524862 GTTCTGCCACATCAGCCTTG 59.475 55.000 0.00 0.00 34.19 3.61
1893 2198 0.609957 TTCTGCCACATCAGCCTTGG 60.610 55.000 0.00 0.00 34.19 3.61
1904 2231 2.818921 TCAGCCTTGGTGCCAATAAAT 58.181 42.857 3.91 0.00 35.20 1.40
1906 2233 3.582208 TCAGCCTTGGTGCCAATAAATTT 59.418 39.130 3.91 0.00 35.20 1.82
1907 2234 4.041444 TCAGCCTTGGTGCCAATAAATTTT 59.959 37.500 3.91 0.00 35.20 1.82
1978 2306 1.651235 ACTTTAGCCCATTCCCCCATT 59.349 47.619 0.00 0.00 0.00 3.16
1987 2315 1.092549 ATTCCCCCATTTCACACCCT 58.907 50.000 0.00 0.00 0.00 4.34
1988 2316 1.761711 TTCCCCCATTTCACACCCTA 58.238 50.000 0.00 0.00 0.00 3.53
2025 2353 3.114616 CTCACCGCTGCCAACTCG 61.115 66.667 0.00 0.00 0.00 4.18
2026 2354 3.573772 CTCACCGCTGCCAACTCGA 62.574 63.158 0.00 0.00 0.00 4.04
2029 2357 2.185350 CCGCTGCCAACTCGATCT 59.815 61.111 0.00 0.00 0.00 2.75
2030 2358 1.880340 CCGCTGCCAACTCGATCTC 60.880 63.158 0.00 0.00 0.00 2.75
2033 2361 0.529555 GCTGCCAACTCGATCTCTCC 60.530 60.000 0.00 0.00 0.00 3.71
2034 2362 0.248825 CTGCCAACTCGATCTCTCCG 60.249 60.000 0.00 0.00 0.00 4.63
2035 2363 1.590259 GCCAACTCGATCTCTCCGC 60.590 63.158 0.00 0.00 0.00 5.54
2178 2527 4.410228 TCCTTATCCATTCCTCTTCTGTGG 59.590 45.833 0.00 0.00 0.00 4.17
2182 2531 1.340405 CCATTCCTCTTCTGTGGGTGG 60.340 57.143 0.00 0.00 31.81 4.61
2183 2532 1.630369 CATTCCTCTTCTGTGGGTGGA 59.370 52.381 0.00 0.00 0.00 4.02
2184 2533 2.044793 TTCCTCTTCTGTGGGTGGAT 57.955 50.000 0.00 0.00 0.00 3.41
2185 2534 1.279496 TCCTCTTCTGTGGGTGGATG 58.721 55.000 0.00 0.00 0.00 3.51
2186 2535 1.203300 TCCTCTTCTGTGGGTGGATGA 60.203 52.381 0.00 0.00 0.00 2.92
2187 2536 1.209019 CCTCTTCTGTGGGTGGATGAG 59.791 57.143 0.00 0.00 35.13 2.90
2188 2537 0.615331 TCTTCTGTGGGTGGATGAGC 59.385 55.000 0.00 0.00 0.00 4.26
2189 2538 0.617413 CTTCTGTGGGTGGATGAGCT 59.383 55.000 0.00 0.00 0.00 4.09
2190 2539 0.615331 TTCTGTGGGTGGATGAGCTC 59.385 55.000 6.82 6.82 0.00 4.09
2191 2540 0.252421 TCTGTGGGTGGATGAGCTCT 60.252 55.000 16.19 0.00 0.00 4.09
2192 2541 0.177604 CTGTGGGTGGATGAGCTCTC 59.822 60.000 16.19 9.73 0.00 3.20
2193 2542 0.545071 TGTGGGTGGATGAGCTCTCA 60.545 55.000 16.19 8.01 44.59 3.27
2194 2543 0.177604 GTGGGTGGATGAGCTCTCAG 59.822 60.000 16.19 0.00 43.61 3.35
2195 2544 1.145819 GGGTGGATGAGCTCTCAGC 59.854 63.158 16.19 17.92 43.61 4.26
2204 2553 4.908790 GCTCTCAGCTCAGTGGTC 57.091 61.111 0.00 0.00 38.45 4.02
2205 2554 1.970639 GCTCTCAGCTCAGTGGTCA 59.029 57.895 0.00 0.00 38.45 4.02
2206 2555 0.108709 GCTCTCAGCTCAGTGGTCAG 60.109 60.000 0.00 0.00 38.45 3.51
2207 2556 0.531657 CTCTCAGCTCAGTGGTCAGG 59.468 60.000 0.00 0.00 0.00 3.86
2208 2557 0.902048 TCTCAGCTCAGTGGTCAGGG 60.902 60.000 0.00 0.00 0.00 4.45
2209 2558 1.897225 CTCAGCTCAGTGGTCAGGGG 61.897 65.000 0.00 0.00 0.00 4.79
2210 2559 2.608988 AGCTCAGTGGTCAGGGGG 60.609 66.667 0.00 0.00 0.00 5.40
2211 2560 4.416738 GCTCAGTGGTCAGGGGGC 62.417 72.222 0.00 0.00 0.00 5.80
2212 2561 2.930019 CTCAGTGGTCAGGGGGCA 60.930 66.667 0.00 0.00 0.00 5.36
2213 2562 2.930019 TCAGTGGTCAGGGGGCAG 60.930 66.667 0.00 0.00 0.00 4.85
2214 2563 3.252284 CAGTGGTCAGGGGGCAGT 61.252 66.667 0.00 0.00 0.00 4.40
2215 2564 3.252284 AGTGGTCAGGGGGCAGTG 61.252 66.667 0.00 0.00 0.00 3.66
2218 2567 3.971702 GGTCAGGGGGCAGTGCTT 61.972 66.667 16.11 0.00 0.00 3.91
2219 2568 2.602676 GGTCAGGGGGCAGTGCTTA 61.603 63.158 16.11 0.00 0.00 3.09
2220 2569 1.078143 GTCAGGGGGCAGTGCTTAG 60.078 63.158 16.11 1.31 0.00 2.18
2221 2570 2.439156 CAGGGGGCAGTGCTTAGC 60.439 66.667 16.11 0.00 0.00 3.09
2233 2582 3.849953 CTTAGCCGGCGCGTGTTC 61.850 66.667 23.20 0.00 41.18 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.209747 GTACCTGGGCCTTACCTCTTG 59.790 57.143 4.53 0.00 39.10 3.02
1 2 1.203389 TGTACCTGGGCCTTACCTCTT 60.203 52.381 4.53 0.00 39.10 2.85
3 4 0.831307 CTGTACCTGGGCCTTACCTC 59.169 60.000 4.53 0.00 39.10 3.85
4 5 0.118547 ACTGTACCTGGGCCTTACCT 59.881 55.000 4.53 0.00 39.10 3.08
5 6 1.483827 GTACTGTACCTGGGCCTTACC 59.516 57.143 4.53 0.00 37.93 2.85
6 7 2.464782 AGTACTGTACCTGGGCCTTAC 58.535 52.381 14.05 4.33 0.00 2.34
8 9 1.907255 GAAGTACTGTACCTGGGCCTT 59.093 52.381 14.05 0.58 0.00 4.35
9 10 1.078989 AGAAGTACTGTACCTGGGCCT 59.921 52.381 14.05 1.03 0.00 5.19
11 12 3.697619 AAAGAAGTACTGTACCTGGGC 57.302 47.619 14.05 0.62 0.00 5.36
54 55 2.291930 TGGGTCCCACTTGTCAGTTTTT 60.292 45.455 6.47 0.00 0.00 1.94
55 56 1.286553 TGGGTCCCACTTGTCAGTTTT 59.713 47.619 6.47 0.00 0.00 2.43
56 57 0.923358 TGGGTCCCACTTGTCAGTTT 59.077 50.000 6.47 0.00 0.00 2.66
57 58 2.627771 TGGGTCCCACTTGTCAGTT 58.372 52.632 6.47 0.00 0.00 3.16
58 59 4.411164 TGGGTCCCACTTGTCAGT 57.589 55.556 6.47 0.00 0.00 3.41
69 70 2.969300 TTTGACTTGCGGGTGGGTCC 62.969 60.000 0.00 0.00 0.00 4.46
74 75 0.030638 CTGGTTTTGACTTGCGGGTG 59.969 55.000 0.00 0.00 0.00 4.61
75 76 1.734388 GCTGGTTTTGACTTGCGGGT 61.734 55.000 0.00 0.00 0.00 5.28
76 77 1.007387 GCTGGTTTTGACTTGCGGG 60.007 57.895 0.00 0.00 0.00 6.13
77 78 0.314935 ATGCTGGTTTTGACTTGCGG 59.685 50.000 0.00 0.00 0.00 5.69
79 80 2.796593 GTCAATGCTGGTTTTGACTTGC 59.203 45.455 8.19 0.00 45.22 4.01
80 81 3.181477 TGGTCAATGCTGGTTTTGACTTG 60.181 43.478 13.58 0.00 46.92 3.16
81 82 3.030291 TGGTCAATGCTGGTTTTGACTT 58.970 40.909 13.58 0.00 46.92 3.01
84 85 1.340889 GCTGGTCAATGCTGGTTTTGA 59.659 47.619 0.00 0.00 0.00 2.69
85 86 1.068895 TGCTGGTCAATGCTGGTTTTG 59.931 47.619 0.00 0.00 0.00 2.44
87 88 0.675633 GTGCTGGTCAATGCTGGTTT 59.324 50.000 0.00 0.00 0.00 3.27
89 90 1.604593 GGTGCTGGTCAATGCTGGT 60.605 57.895 0.00 0.00 0.00 4.00
90 91 1.604308 TGGTGCTGGTCAATGCTGG 60.604 57.895 0.00 0.00 0.00 4.85
92 93 0.251474 ATGTGGTGCTGGTCAATGCT 60.251 50.000 0.00 0.00 0.00 3.79
94 95 1.471287 CTGATGTGGTGCTGGTCAATG 59.529 52.381 0.00 0.00 0.00 2.82
96 97 0.890542 GCTGATGTGGTGCTGGTCAA 60.891 55.000 0.00 0.00 0.00 3.18
97 98 1.302752 GCTGATGTGGTGCTGGTCA 60.303 57.895 0.00 0.00 0.00 4.02
104 105 0.520404 GACTTGCAGCTGATGTGGTG 59.480 55.000 20.43 1.91 38.35 4.17
107 108 0.803117 CTGGACTTGCAGCTGATGTG 59.197 55.000 20.43 6.40 0.00 3.21
110 111 2.555757 GTTTTCTGGACTTGCAGCTGAT 59.444 45.455 20.43 0.00 0.00 2.90
112 113 1.000938 GGTTTTCTGGACTTGCAGCTG 60.001 52.381 10.11 10.11 0.00 4.24
113 114 1.322442 GGTTTTCTGGACTTGCAGCT 58.678 50.000 0.00 0.00 0.00 4.24
114 115 1.032014 TGGTTTTCTGGACTTGCAGC 58.968 50.000 0.00 0.00 0.00 5.25
115 116 1.338020 GGTGGTTTTCTGGACTTGCAG 59.662 52.381 0.00 0.00 0.00 4.41
116 117 1.398692 GGTGGTTTTCTGGACTTGCA 58.601 50.000 0.00 0.00 0.00 4.08
117 118 0.673985 GGGTGGTTTTCTGGACTTGC 59.326 55.000 0.00 0.00 0.00 4.01
118 119 1.681264 GTGGGTGGTTTTCTGGACTTG 59.319 52.381 0.00 0.00 0.00 3.16
119 120 1.749286 CGTGGGTGGTTTTCTGGACTT 60.749 52.381 0.00 0.00 0.00 3.01
120 121 0.179029 CGTGGGTGGTTTTCTGGACT 60.179 55.000 0.00 0.00 0.00 3.85
121 122 1.170290 CCGTGGGTGGTTTTCTGGAC 61.170 60.000 0.00 0.00 0.00 4.02
122 123 1.149627 CCGTGGGTGGTTTTCTGGA 59.850 57.895 0.00 0.00 0.00 3.86
123 124 1.901464 CCCGTGGGTGGTTTTCTGG 60.901 63.158 0.00 0.00 0.00 3.86
124 125 1.901464 CCCCGTGGGTGGTTTTCTG 60.901 63.158 3.83 0.00 38.25 3.02
125 126 2.518933 CCCCGTGGGTGGTTTTCT 59.481 61.111 3.83 0.00 38.25 2.52
144 145 5.793030 AACAATCCCATAACGGACAAAAA 57.207 34.783 0.00 0.00 36.56 1.94
146 147 5.416326 CCTAAACAATCCCATAACGGACAAA 59.584 40.000 0.00 0.00 36.56 2.83
149 150 3.881089 CCCTAAACAATCCCATAACGGAC 59.119 47.826 0.00 0.00 36.56 4.79
150 151 3.117813 CCCCTAAACAATCCCATAACGGA 60.118 47.826 0.00 0.00 36.56 4.69
151 152 3.219281 CCCCTAAACAATCCCATAACGG 58.781 50.000 0.00 0.00 0.00 4.44
152 153 3.219281 CCCCCTAAACAATCCCATAACG 58.781 50.000 0.00 0.00 0.00 3.18
153 154 4.259933 ACCCCCTAAACAATCCCATAAC 57.740 45.455 0.00 0.00 0.00 1.89
154 155 5.103430 CCTTACCCCCTAAACAATCCCATAA 60.103 44.000 0.00 0.00 0.00 1.90
155 156 4.417518 CCTTACCCCCTAAACAATCCCATA 59.582 45.833 0.00 0.00 0.00 2.74
156 157 3.206639 CCTTACCCCCTAAACAATCCCAT 59.793 47.826 0.00 0.00 0.00 4.00
158 159 2.091499 CCCTTACCCCCTAAACAATCCC 60.091 54.545 0.00 0.00 0.00 3.85
160 161 4.275810 GTTCCCTTACCCCCTAAACAATC 58.724 47.826 0.00 0.00 0.00 2.67
162 163 2.379567 GGTTCCCTTACCCCCTAAACAA 59.620 50.000 0.00 0.00 31.71 2.83
165 166 1.203415 TCGGTTCCCTTACCCCCTAAA 60.203 52.381 0.00 0.00 34.56 1.85
166 167 0.417035 TCGGTTCCCTTACCCCCTAA 59.583 55.000 0.00 0.00 34.56 2.69
167 168 0.417035 TTCGGTTCCCTTACCCCCTA 59.583 55.000 0.00 0.00 34.56 3.53
170 171 2.291209 TTTTTCGGTTCCCTTACCCC 57.709 50.000 0.00 0.00 34.56 4.95
188 189 8.325787 GGACAAATTTATTACCCCCTGATTTTT 58.674 33.333 0.00 0.00 0.00 1.94
189 190 7.459444 TGGACAAATTTATTACCCCCTGATTTT 59.541 33.333 0.00 0.00 0.00 1.82
190 191 6.962902 TGGACAAATTTATTACCCCCTGATTT 59.037 34.615 0.00 0.00 0.00 2.17
192 193 6.098716 TGGACAAATTTATTACCCCCTGAT 57.901 37.500 0.00 0.00 0.00 2.90
193 194 5.515106 CTGGACAAATTTATTACCCCCTGA 58.485 41.667 0.00 0.00 0.00 3.86
194 195 4.649218 CCTGGACAAATTTATTACCCCCTG 59.351 45.833 0.00 0.00 0.00 4.45
195 196 4.326610 CCCTGGACAAATTTATTACCCCCT 60.327 45.833 0.00 0.00 0.00 4.79
196 197 3.964688 CCCTGGACAAATTTATTACCCCC 59.035 47.826 0.00 0.00 0.00 5.40
199 200 9.465199 TTTACTACCCTGGACAAATTTATTACC 57.535 33.333 0.00 0.00 0.00 2.85
203 204 8.977412 CCATTTTACTACCCTGGACAAATTTAT 58.023 33.333 0.00 0.00 0.00 1.40
204 205 8.171400 TCCATTTTACTACCCTGGACAAATTTA 58.829 33.333 0.00 0.00 31.19 1.40
205 206 7.013834 TCCATTTTACTACCCTGGACAAATTT 58.986 34.615 0.00 0.00 31.19 1.82
206 207 6.557568 TCCATTTTACTACCCTGGACAAATT 58.442 36.000 0.00 0.00 31.19 1.82
207 208 6.147437 TCCATTTTACTACCCTGGACAAAT 57.853 37.500 0.00 0.00 31.19 2.32
208 209 5.586155 TCCATTTTACTACCCTGGACAAA 57.414 39.130 0.00 0.00 31.19 2.83
209 210 5.789574 ATCCATTTTACTACCCTGGACAA 57.210 39.130 0.00 0.00 38.74 3.18
210 211 5.789574 AATCCATTTTACTACCCTGGACA 57.210 39.130 0.00 0.00 38.74 4.02
211 212 7.476540 AAAAATCCATTTTACTACCCTGGAC 57.523 36.000 0.00 0.00 39.44 4.02
250 251 3.554337 GGATCTTTTCATCATGCCATGGC 60.554 47.826 30.54 30.54 42.35 4.40
253 254 3.824133 TCGGATCTTTTCATCATGCCAT 58.176 40.909 0.00 0.00 0.00 4.40
254 255 3.280197 TCGGATCTTTTCATCATGCCA 57.720 42.857 0.00 0.00 0.00 4.92
292 293 7.187824 TCTCTAGTCCAAAAATGAGCAGTAT 57.812 36.000 0.00 0.00 0.00 2.12
314 315 3.921677 TCGACGAATTGGTAAGCTTTCT 58.078 40.909 3.20 0.00 0.00 2.52
346 354 3.062042 CTGAAGAATTTGCAAACCAGGC 58.938 45.455 15.41 5.19 0.00 4.85
413 430 2.031120 CATCCCTCCAGTCTCTCAGTC 58.969 57.143 0.00 0.00 0.00 3.51
414 431 1.342874 CCATCCCTCCAGTCTCTCAGT 60.343 57.143 0.00 0.00 0.00 3.41
415 432 1.412079 CCATCCCTCCAGTCTCTCAG 58.588 60.000 0.00 0.00 0.00 3.35
426 443 1.411612 CCAACGTAGTACCCATCCCTC 59.588 57.143 0.00 0.00 45.00 4.30
610 638 4.241555 AATGCGGGCCGAGCTAGG 62.242 66.667 33.44 8.78 35.28 3.02
611 639 2.923426 TTCAATGCGGGCCGAGCTAG 62.923 60.000 33.44 14.70 35.28 3.42
612 640 2.923426 CTTCAATGCGGGCCGAGCTA 62.923 60.000 33.44 12.82 35.28 3.32
705 776 1.344763 AGAACTTGTGGGAAGGAGACG 59.655 52.381 0.00 0.00 0.00 4.18
709 780 2.418669 AGGAAGAACTTGTGGGAAGGA 58.581 47.619 0.00 0.00 0.00 3.36
710 781 2.959465 AGGAAGAACTTGTGGGAAGG 57.041 50.000 0.00 0.00 0.00 3.46
713 784 1.628846 GGCTAGGAAGAACTTGTGGGA 59.371 52.381 0.00 0.00 0.00 4.37
750 852 0.247736 GGACAGACACTGGCACTAGG 59.752 60.000 6.93 0.00 42.18 3.02
860 983 3.526841 AGCCCTCAGGATTCAAGAAAGAT 59.473 43.478 0.00 0.00 33.47 2.40
874 997 2.188994 GCACCTAGCAGCCCTCAG 59.811 66.667 0.00 0.00 44.79 3.35
897 1020 4.668576 TGTCTGCGCTTGATTTAAGAAG 57.331 40.909 9.73 0.00 38.76 2.85
983 1118 0.105593 CATCCTCCACGCACTGCTAT 59.894 55.000 0.00 0.00 0.00 2.97
990 1130 4.147449 CGCTCCATCCTCCACGCA 62.147 66.667 0.00 0.00 0.00 5.24
1282 1462 9.697990 AGTGCTACTTAATTAACTAGTACTCCT 57.302 33.333 19.98 7.85 29.07 3.69
1311 1491 8.470657 TCTAATCTACAATCTGCTGAGTACAT 57.529 34.615 0.00 0.00 0.00 2.29
1312 1492 7.469318 GCTCTAATCTACAATCTGCTGAGTACA 60.469 40.741 0.00 0.00 0.00 2.90
1390 1581 4.189639 ACTTCCTCTAGCTAAACAACCG 57.810 45.455 0.00 0.00 0.00 4.44
1494 1689 1.064758 GTACCCATCACCATCAAGGCA 60.065 52.381 0.00 0.00 43.14 4.75
1498 1698 2.159014 GCTACGTACCCATCACCATCAA 60.159 50.000 0.00 0.00 0.00 2.57
1580 1821 2.419324 ACACGCCGTGTTTGTAAAAGAA 59.581 40.909 18.60 0.00 45.08 2.52
1630 1874 5.189145 TCCCTTTCTATAACTCCTTCACACC 59.811 44.000 0.00 0.00 0.00 4.16
1640 1884 3.970640 CAGGAGCCTCCCTTTCTATAACT 59.029 47.826 7.26 0.00 37.19 2.24
1644 1888 2.293184 TGTCAGGAGCCTCCCTTTCTAT 60.293 50.000 7.26 0.00 37.19 1.98
1652 1896 4.133078 CAATATTTCTGTCAGGAGCCTCC 58.867 47.826 1.26 1.26 36.58 4.30
1682 1926 2.230750 GCCTTCAGTCGGTAAGTGTAGT 59.769 50.000 0.00 0.00 0.00 2.73
1693 1937 1.217882 AAACTTCACGCCTTCAGTCG 58.782 50.000 0.00 0.00 0.00 4.18
1721 1983 8.246180 GGCAAAGATTATGTCTTCATCTTGAAA 58.754 33.333 0.00 0.00 46.39 2.69
1722 1984 7.613022 AGGCAAAGATTATGTCTTCATCTTGAA 59.387 33.333 0.00 0.00 46.39 2.69
1723 1985 7.114754 AGGCAAAGATTATGTCTTCATCTTGA 58.885 34.615 0.00 0.00 46.39 3.02
1724 1986 7.066645 TGAGGCAAAGATTATGTCTTCATCTTG 59.933 37.037 0.00 0.00 46.39 3.02
1726 1988 6.656902 TGAGGCAAAGATTATGTCTTCATCT 58.343 36.000 0.00 0.00 46.39 2.90
1727 1989 6.932356 TGAGGCAAAGATTATGTCTTCATC 57.068 37.500 0.00 0.00 46.39 2.92
1728 1990 6.489361 GGATGAGGCAAAGATTATGTCTTCAT 59.511 38.462 0.00 0.00 46.39 2.57
1734 1996 8.716674 ATTAATGGATGAGGCAAAGATTATGT 57.283 30.769 0.00 0.00 0.00 2.29
1740 2002 8.821686 TTCTTAATTAATGGATGAGGCAAAGA 57.178 30.769 0.00 0.00 0.00 2.52
1790 2093 3.490249 CCACACCTTCGCTCGTAATATGA 60.490 47.826 0.00 0.00 0.00 2.15
1800 2103 0.037232 GCTAGTTCCACACCTTCGCT 60.037 55.000 0.00 0.00 0.00 4.93
1807 2110 2.808543 CTCCAAACAGCTAGTTCCACAC 59.191 50.000 0.00 0.00 40.26 3.82
1808 2111 2.810400 GCTCCAAACAGCTAGTTCCACA 60.810 50.000 0.00 0.00 40.26 4.17
1904 2231 2.500392 AGGGTATAACAGCGCCAAAA 57.500 45.000 2.29 0.00 0.00 2.44
1906 2233 2.502538 AGTTAGGGTATAACAGCGCCAA 59.497 45.455 2.29 0.00 0.00 4.52
1907 2234 2.112998 AGTTAGGGTATAACAGCGCCA 58.887 47.619 2.29 0.00 0.00 5.69
1911 2238 7.157347 GGGTTATGTAGTTAGGGTATAACAGC 58.843 42.308 0.00 0.00 36.45 4.40
1978 2306 1.208535 CTATGGCGGTTAGGGTGTGAA 59.791 52.381 0.00 0.00 0.00 3.18
1987 2315 3.389983 AGGCAAATCTACTATGGCGGTTA 59.610 43.478 0.00 0.00 43.66 2.85
1988 2316 2.172717 AGGCAAATCTACTATGGCGGTT 59.827 45.455 0.00 0.00 43.66 4.44
2034 2362 3.438088 CGATAAGATCGCCGTCGC 58.562 61.111 0.00 0.00 46.55 5.19
2048 2392 1.501741 GCACGCAATGACAACCGAT 59.498 52.632 0.00 0.00 0.00 4.18
2049 2393 2.942879 GCACGCAATGACAACCGA 59.057 55.556 0.00 0.00 0.00 4.69
2109 2456 1.202891 TGACGGAGAGAGTTGAGGACA 60.203 52.381 0.00 0.00 0.00 4.02
2178 2527 4.852962 GCTGAGAGCTCATCCACC 57.147 61.111 17.77 0.00 39.13 4.61
2187 2536 0.108709 CTGACCACTGAGCTGAGAGC 60.109 60.000 7.36 0.00 42.84 4.09
2188 2537 0.531657 CCTGACCACTGAGCTGAGAG 59.468 60.000 7.36 0.00 0.00 3.20
2189 2538 0.902048 CCCTGACCACTGAGCTGAGA 60.902 60.000 7.36 0.00 0.00 3.27
2190 2539 1.595882 CCCTGACCACTGAGCTGAG 59.404 63.158 0.00 0.00 0.00 3.35
2191 2540 1.915266 CCCCTGACCACTGAGCTGA 60.915 63.158 0.00 0.00 0.00 4.26
2192 2541 2.667418 CCCCTGACCACTGAGCTG 59.333 66.667 0.00 0.00 0.00 4.24
2193 2542 2.608988 CCCCCTGACCACTGAGCT 60.609 66.667 0.00 0.00 0.00 4.09
2194 2543 4.416738 GCCCCCTGACCACTGAGC 62.417 72.222 0.00 0.00 0.00 4.26
2195 2544 2.930019 TGCCCCCTGACCACTGAG 60.930 66.667 0.00 0.00 0.00 3.35
2196 2545 2.930019 CTGCCCCCTGACCACTGA 60.930 66.667 0.00 0.00 0.00 3.41
2197 2546 3.252284 ACTGCCCCCTGACCACTG 61.252 66.667 0.00 0.00 0.00 3.66
2198 2547 3.252284 CACTGCCCCCTGACCACT 61.252 66.667 0.00 0.00 0.00 4.00
2201 2550 2.543067 CTAAGCACTGCCCCCTGACC 62.543 65.000 0.00 0.00 0.00 4.02
2202 2551 1.078143 CTAAGCACTGCCCCCTGAC 60.078 63.158 0.00 0.00 0.00 3.51
2203 2552 2.971598 GCTAAGCACTGCCCCCTGA 61.972 63.158 0.00 0.00 0.00 3.86
2204 2553 2.439156 GCTAAGCACTGCCCCCTG 60.439 66.667 0.00 0.00 0.00 4.45
2205 2554 3.732849 GGCTAAGCACTGCCCCCT 61.733 66.667 0.00 0.00 43.11 4.79
2216 2565 3.849953 GAACACGCGCCGGCTAAG 61.850 66.667 26.68 17.55 36.88 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.